changeset 11:167263f8fed3 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri May 16 06:34:31 2014 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="INFORNA_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
+    </set_environment>
+    <package name="vienna_rna" version="2.1.5">
+        <repository changeset_revision="9d5a8bae2e8a" name="package_vienna_rna_2_1" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="inforna" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/versions/INFO-RNA-2.1.2.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="9d5a8bae2e8a" name="package_vienna_rna_2_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="vienna_rna" version="2.1.5" />
+                    </repository>
+                </action>
+                <action type="shell_command">make VIENNA=$ROOT_VIENNA_RNA_DIR LDFLAGS="-L$ROOT_VIENNA_RNA_DIR/lib -lRNA -fopenmp" </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                
+            </actions>
+        </install>
+        <readme>Compiling InfoRNA requires a C compiler (typically gcc)</readme>
+    </package>
+</tool_dependency>