Mercurial > repos > bebatut > plot_generic_x_y_plot
changeset 2:5aef8588b14e draft default tip
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/plot_generic_x_y_plot commit e4da8b5a999456b2b6dabdf6b8f3bfea1eba5504-dirty
| author | bebatut |
|---|---|
| date | Mon, 18 Apr 2016 11:09:40 -0400 |
| parents | 3bacff87ad39 |
| children | |
| files | plot_generic_x_y_plot.xml test-data/input_file.txt test-data/output.pdf test-data/output_test.pdf |
| diffstat | 4 files changed, 25 insertions(+), 7 deletions(-) [+] |
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--- a/plot_generic_x_y_plot.xml Fri Apr 15 05:40:49 2016 -0400 +++ b/plot_generic_x_y_plot.xml Mon Apr 18 11:09:40 2016 -0400 @@ -87,18 +87,37 @@ </outputs> <tests> + <test> + <param name="input_file" value="input_file.txt" /> + <param name="header" value="FALSE" /> + <param name="output_format" value="pdf" /> + <param name="x_column_id" value="2" /> + <param name="y_column_id" value="3" /> + <param name="xlog" value="FALSE" /> + <param name="ylog" value="FALSE" /> + <param name="xlab" value="" /> + <param name="ylab" value="" /> + <param name="color" value= "grey25" /> + <param name="pch" value="21" /> + <param name="lim" value="FALSE" /> + <param name="abline" value="FALSE" /> + <param name="bottom_margin" value="5" /> + <param name="left_margin" value="5" /> + <param name="top_margin" value="1" /> + <param name="right_margin" value="1" /> + <output name="output_pdf_file" file="output_file.pdf" /> + </test> </tests> <help><![CDATA[ - **What it does** +**What it does** - This tool plot a generic X-Y plot from a tabular file into different format files given different customizable parameters: +This tool plot a generic X-Y plot: - .. image:: $PATH_TO_IMAGES/output.png - :scale: 50 % +.. image:: $PATH_TO_IMAGES/output.png + :scale: 50 % - This tool relies on R's plot function. - +This tool relies on R's plot function. The input file must be a tabular file with at least two data columns. The output image is customizable (margin, legend positions, ...) and can be export in different format. ]]></help> <citations>
--- a/test-data/input_file.txt Fri Apr 15 05:40:49 2016 -0400 +++ b/test-data/input_file.txt Mon Apr 18 11:09:40 2016 -0400 @@ -1,4 +1,3 @@ - SRR072232 SRR072233 Peptidoglycan glycosyltransferase 0.000161727 0.0118886 4Fe 4S ferredoxin iron sulfur binding domain containing protein 0.000868638 0.000531762 glutamine synthetase 2.69312e-06 5.73862e-06