comparison tool_dependencies.xml @ 1:3cb6227f905e draft default tip

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_2_0 commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty

0:bbac0ef27bb2

    </package>
    <package name="metaphlan2" version="2.2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.2.0.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/</destination_directory>
                </action>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                    </repository>

                    </repository>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>

1:3cb6227f905e

    </package>
    <package name="metaphlan2" version="2.2.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.2.0.zip</action>
                <action type="move_file">
                    <source>metaphlan2.py</source>
                    <destination>$INSTALL_DIR/bin/</destination>
                </action>
                <action type="move_directory_files">
                    <source_directory>utils/</source_directory>
                    <destination_directory>$INSTALL_DIR/bin/</destination_directory>
                </action>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                    </repository>

                    </repository>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>