comparison normalize_dataset.xml @ 0:2ac4623ac41c draft

planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/normalize_dataset commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty

0:2ac4623ac41c

<tool id="normalize_dataset" name="Normalize a dataset by" version="0.1.0">
    <description>row or column sum</description>

    <requirements>
    </requirements>

    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>

    <version_command></version_command>

    <command><![CDATA[
        python $__tool_directory__/normalize_dataset.py
            --input_file $input_file
            --output_file $output_file
            --normalization $normalization
            --format $format
    ]]></command>

    <inputs>
        <param name="input_file" type="data" format="tabular,tsv,csv" label="Input file" help="File in tabular format with tab-separated columns and header in first line (--input_file)"/>

        <param name="normalization" label="Normalization on" type="select" help="(--normalization)">
            <option value="column" selected="True">Column</option>
            <option value="row">Row</option>
        </param>

        <param name="format" label="Output format" type="select" help="(--format)">
            <option value="proportion" selected="True">Proportion</option>
            <option value="percentage">Percentage</option>
        </param>
    </inputs>

    <outputs>
        <data name="output_file" format="tabular"
            label="${tool.name} on ${on_string}: Normalized dataset" />
    </outputs>

    <tests>
    </tests>

    <help><![CDATA[
        **What it does**

        This tool normalizes each row or column of a dataset by the row or column sum.

    ]]></help>

    <citations>
    </citations>
</tool>