# HG changeset patch
# User bebatut
# Date 1446732193 18000
# Node ID ebe6b7fab32064d342d9fc9d59be1e4203c65e06
# Parent  31dd7ace2be45715a7141505d81b72c551448a6d
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 90c51a29d5aaab3f8dea67ac12098dc386e23b4e-dirty

diff -r 31dd7ace2be4 -r ebe6b7fab320 metaphlan2.xml
--- a/metaphlan2.xml	Thu Nov 05 08:44:11 2015 -0500
+++ b/metaphlan2.xml	Thu Nov 05 09:03:13 2015 -0500
@@ -32,8 +32,7 @@
                 --bowtie2out $bowtie2_output
             #end if
 
-            -t $analysis_type
-
+            -t $analysis_type$analysis_type_select
             #if $analysis_type.analysis_type_select == "rel_ab"
                 --tax_lev $analysis_type.taxonomic_level 
             #else if $analysis_type.analysis_type_select == "marker_ab_table"