# HG changeset patch # User bebatut # Date 1446737519 18000 # Node ID bee6cb51b96d6e29d0dcaa365808e1b700982641 # Parent 84dd21255542b9a67c2a14121cfa0c4555235b3f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit bf4b8a62e4414d68a917f5b72f3aedf34facaff2-dirty diff -r 84dd21255542 -r bee6cb51b96d metaphlan2.xml --- a/metaphlan2.xml Thu Nov 05 10:22:17 2015 -0500 +++ b/metaphlan2.xml Thu Nov 05 10:31:59 2015 -0500 @@ -35,9 +35,10 @@ --mpa_pkl \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200.pkl --bowtie2db \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200 - $bowtie2_output - #if not $bowtie2_output + # if $bowtie2_output: --bowtie2out $bowtie2_output_file + # else: + --no_map #end if -t $analysis_type.analysis_type_select @@ -112,7 +113,7 @@ - + @@ -125,7 +126,7 @@ - bowtie2_output != '--no_map' + bowtie2_output - +