# HG changeset patch
# User bebatut
# Date 1446736619 18000
# Node ID 42fb257a449070a9912da1c0a2893c2b3b4f331f
# Parent  54f2ad0c6960dd1885130efd2ae5f932e6bd0036
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit bf4b8a62e4414d68a917f5b72f3aedf34facaff2-dirty

diff -r 54f2ad0c6960 -r 42fb257a4490 metaphlan2.xml
--- a/metaphlan2.xml	Thu Nov 05 10:08:51 2015 -0500
+++ b/metaphlan2.xml	Thu Nov 05 10:16:59 2015 -0500
@@ -37,7 +37,7 @@
 
             $bowtie2_output
             #if $bowtie2_output == ''
-                --bowtie2out $bowtie2_output
+                --bowtie2out $bowtie2_output_file
             #end if
 
             -t $analysis_type.analysis_type_select