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view tool_dependencies.xml @ 1:11bb77fab91f draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 3f43a4146305ef11621ab786ab20b3ab46aca139-dirty
author bebatut
date Wed, 28 Oct 2015 11:37:45 -0400
parents 35d3ad2fb7a4
children 8ce82a6b20d7
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bowtie2" version="2.2.5">
        <repository changeset_revision="e627be2bba58" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone https://bitbucket.org/biobakery/metaphlan2</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>