Mercurial > repos > bebatut > metaphlan2

diff metaphlan2krona.xml @ 27:fb2dc25a832d draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
author bebatut
date Tue, 12 Apr 2016 03:07:32 -0400
parents 3f52f2d65d41
children 1d993cca38e3
line wrap: on
line diff
--- a/metaphlan2krona.xml	Thu Mar 31 05:45:29 2016 -0400
+++ b/metaphlan2krona.xml	Tue Apr 12 03:07:32 2016 -0400
@@ -21,13 +21,13 @@
 
     <version_command>
 <![CDATA[
-python \${METAPHLAN2_DIR}/utils/metaphlan2krona.py -v
+metaphlan2krona.py -v
 ]]>
     </version_command>
 
     <command>
 <![CDATA[        
-        python \${METAPHLAN2_DIR}/utils/metaphlan2krona.py
+        metaphlan2krona.py
             -p $input_file
             -k $krona
 ]]>
@@ -43,7 +43,11 @@
             label="${tool.name} on ${on_string}: Krona file" />
     </outputs>
 
-    <tests>      
+    <tests>
+        <test>
+            <param name="input_file" value="metaphlan2_profiled_metagenome.txt"/>
+            <output name="krona" file="metaphlan2krona_output_file.txt"/>
+        </test>      
     </tests>
 
     <help><![CDATA[