Mercurial > repos > bebatut > metaphlan2

diff metaphlan2.xml @ 23:62f9857766e6 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit eb7c3b4b1b4f2b11d105c091ce20df6d89fd6790
author bebatut
date Tue, 08 Dec 2015 09:05:02 -0500
parents 9ab0e6e9d1fb
children e8e0f835b4b6
line wrap: on
line diff
--- a/metaphlan2.xml	Tue Nov 17 06:01:20 2015 -0500
+++ b/metaphlan2.xml	Tue Dec 08 09:05:02 2015 -0500
@@ -21,7 +21,7 @@
 
     <version_command>
 <![CDATA[
-python \${METAPHLAN2_DIR}/metaphlan.py -v
+python \${METAPHLAN2_DIR}/metaphlan2.py -v
 ]]>
     </version_command>
 
@@ -90,6 +90,9 @@
                 <option value="s">Species only</option>
               </param>
             </when>
+            <when value="rel_ab_w_read_stats"/>
+            <when value="reads_map"/>
+            <when value="clade_profiles"/>
             <when value="marker_ab_table">
                 <param name="nreads" type="integer" value="0" label="Total number of reads in the original metagenome" help="It is used for normalizing the length-normalized counts with the metagenome size as well. No normalization applied if the value is not specified"/>
             </when>