Mercurial > repos > bebatut > metaphlan2
comparison tool_dependencies.xml @ 23:62f9857766e6 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit eb7c3b4b1b4f2b11d105c091ce20df6d89fd6790
| author | bebatut |
|---|---|
| date | Tue, 08 Dec 2015 09:05:02 -0500 |
| parents | 9ab0e6e9d1fb |
| children | 51e7d53fcefb |
comparison
equal
deleted
inserted
replaced
| 22:9ab0e6e9d1fb | 23:62f9857766e6 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="bowtie2" version="2.2.4"> | 3 <package name="bowtie2" version="2.2.5"> |
| 4 <repository changeset_revision="aef49b7f08b2" name="bowtie2" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="f5582ac5ba3c" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="metaphlan2" version="2.0"> | 6 <package name="metaphlan2" version="2.0"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action> | 9 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action> |
| 10 <action type="move_directory_files"> | 10 <action type="move_directory_files"> |
| 11 <source_directory>.</source_directory> | 11 <source_directory>.</source_directory> |
| 12 <destination_directory>$INSTALL_DIR/</destination_directory> | 12 <destination_directory>$INSTALL_DIR/</destination_directory> |
| 13 </action> | 13 </action> |
| 14 <action type="set_environment"> | 14 <action type="set_environment"> |
| 15 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable> | 15 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable> |
| 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 17 </action> | 17 </action> |
| 18 </actions> | 18 </actions> |
| 19 </install> | 19 </install> |
| 20 <readme /> | 20 <readme /> |