Mercurial > repos > bebatut > metaphlan2

annotate tool_dependencies.xml @ 22:9ab0e6e9d1fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 283fe2285a4e95f4505133fc7fa1eee96a4d274d
author bebatut
date Tue, 17 Nov 2015 06:01:20 -0500
parents 794951e4d986
children 62f9857766e6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
1 <?xml version="1.0"?>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
2 <tool_dependency>
13
f92352296dd7 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 8afeda0bbec5217302cc98c242bd32c0a356a5cb-dirty
bebatut
parents: 2
diff changeset
3 <package name="bowtie2" version="2.2.4">
22
9ab0e6e9d1fb planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 283fe2285a4e95f4505133fc7fa1eee96a4d274d
bebatut
parents: 21
diff changeset
4 <repository changeset_revision="aef49b7f08b2" name="bowtie2" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
5 </package>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
6 <package name="metaphlan2" version="2.0">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
7 <install version="1.0">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
8 <actions>
2
8ce82a6b20d7 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 3f43a4146305ef11621ab786ab20b3ab46aca139-dirty
bebatut
parents: 0
diff changeset
9 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
0
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
10 <action type="move_directory_files">
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
11 <source_directory>.</source_directory>
21
794951e4d986 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 41f2777b40defd42dae7aac18781c7dadf73847a
bebatut
parents: 20
diff changeset
12 <destination_directory>$INSTALL_DIR/</destination_directory>
0
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
13 </action>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
14 <action type="set_environment">
20
58e031637111 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 757604ca54eff007917e5f4c4735b1728988c321-dirty
bebatut
parents: 13
diff changeset
15 <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable>
0
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
17 </action>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
18 </actions>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
19 </install>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
20 <readme />
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
21 </package>
35d3ad2fb7a4 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 32fa724f84e56b46f52254e98d276849a26a9faa-dirty
bebatut
parents:
diff changeset
22 </tool_dependency>