Mercurial > repos > bebatut > humann2_renorm_table

view README.rst @ 4:b9e69e2c2a92 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
author bebatut
date Fri, 03 Mar 2017 06:30:28 -0500
parents e110d0a35fae
children e4bbc7d402f5
line wrap: on
line source

Galaxy wrappers for HUMAnN2
===========================

Galaxy should be able to automatically install the dependencies, i.e. the
HUMAnN2 binaries and its dependencies.

After installation, you must tell Galaxy about the defaut database with
clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where
to find it:

* Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line
* Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip
* Unzip it
* Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder