Mercurial > repos > bebatut > humann2

changeset 6:d566de42554e draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author bebatut
date Fri, 18 Dec 2015 08:37:29 -0500
parents 2bf5fcf30e1f
children d084f63fbf30
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Dec 18 08:34:43 2015 -0500
+++ b/tool_dependencies.xml	Fri Dec 18 08:37:29 2015 -0500
@@ -14,7 +14,7 @@
             <actions>
                 <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
                 <action type="shell_command">export PYTHONPATH="$INSTALL_DIR/bin/lib/python/"</action>
-                <action type="shell_command">python setup.py install --home=$INSTALL_DIR/bin</action>
+                <action type="shell_command">python setup.py install --bypass-dependencies-install</action>
                 <action type="make_directory">$INSTALL_DIR/databases</action>
                 <action type="set_environment">
                     <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable>