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| author | bebatut |
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| date | Thu, 17 Dec 2015 08:58:05 -0500 |
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# Pathway humann2_Coverage PWY-3841: folate transformations II 0.8809842987 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I 0.8743295278 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I|unclassified 0.8349464550 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I 0.8681410286 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.6158849034 PWY66-422: D-galactose degradation V (Leloir pathway) 0.8648845105 PWY66-422: D-galactose degradation V (Leloir pathway)|g__Bacteroides.s__Bacteroides_stercoris 0.6845535912 PWY66-422: D-galactose degradation V (Leloir pathway)|unclassified 0.6480064902 PWY-7208: superpathway of pyrimidine nucleobases salvage 0.8605360313 PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 0.7735925650 PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.7719532479 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis 0.8415156915 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 0.8305160866 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4458543191 PWY-7221: guanosine ribonucleotides de novo biosynthesis 0.8295046849 PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5466620243 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 0.8284828606 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.8284546772 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4612288750 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3487331427 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 0.8284828606 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.8284546772 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4612288750 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3487331427 HSERMETANA-PWY: L-methionine biosynthesis III 0.8209469871 HSERMETANA-PWY: L-methionine biosynthesis III|unclassified 0.6506222511 HSERMETANA-PWY: L-methionine biosynthesis III|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5260791138 PWY-6608: guanosine nucleotides degradation III 0.8135710513 PWY-5695: urate biosynthesis/inosine 5'-phosphate degradation 0.8131292329 PWY-1042: glycolysis IV (plant cytosol) 0.8073362087 PWY-1042: glycolysis IV (plant cytosol)|unclassified 0.8075733547 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 0.8067084841 PWY-5505: L-glutamate and L-glutamine biosynthesis 0.7956553187 PWY-5505: L-glutamate and L-glutamine biosynthesis|unclassified 0.8025020799 PWY-5505: L-glutamate and L-glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.6837852313 CALVIN-PWY: Calvin-Benson-Bassham cycle 0.7915038521 CALVIN-PWY: Calvin-Benson-Bassham cycle|unclassified 0.8430156072 HOMOSER-METSYN-PWY: L-methionine biosynthesis I 0.7795117887 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|unclassified 0.7503794511 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5732198720 PWY-6703: preQ0 biosynthesis 0.7730019027 PWY-6703: preQ0 biosynthesis|unclassified 0.6065842147 COA-PWY-1: coenzyme A biosynthesis II (mammalian) 0.7683016291 PWY-5100: pyruvate fermentation to acetate and lactate II 0.7615540061 PWY-5100: pyruvate fermentation to acetate and lactate II|g__Bacteroides.s__Bacteroides_stercoris 0.7877350144 PWY-5100: pyruvate fermentation to acetate and lactate II|unclassified 0.7743179293 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 0.7483969824 PWY-5097: L-lysine biosynthesis VI 0.7364488478 PWY-5659: GDP-mannose biosynthesis 0.7195416618 PWY-5659: GDP-mannose biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4537597375 PWY-5659: GDP-mannose biosynthesis|unclassified 0.4271216737 PWY-5030: L-histidine degradation III 0.7159345641 PWY-5030: L-histidine degradation III|unclassified 0.7413228115 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 0.7096272649 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 0.8696314986 PWY-7111: pyruvate fermentation to isobutanol (engineered) 0.7034091993 PWY-7111: pyruvate fermentation to isobutanol (engineered)|unclassified 0.7726334156 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 0.6940006090 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 0.8774141461 PWY-7219: adenosine ribonucleotides de novo biosynthesis 0.6910599096 PWY-7219: adenosine ribonucleotides de novo biosynthesis|unclassified 0.9184821788 PWY-6936: seleno-amino acid biosynthesis 0.6881668526 PWY-6936: seleno-amino acid biosynthesis|unclassified 0.7868100095 PWY4FS-7: phosphatidylglycerol biosynthesis I (plastidic) 0.6861061171 PWY4FS-8: phosphatidylglycerol biosynthesis II (non-plastidic) 0.6861061171 PHOSLIPSYN-PWY: superpathway of phospholipid biosynthesis I (bacteria) 0.6654609901 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch) 0.6480336394 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch)|unclassified 0.6886198994 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 0.6472292636 VALSYN-PWY: L-valine biosynthesis 0.6472292636 VALSYN-PWY: L-valine biosynthesis|unclassified 0.6703059978 VALSYN-PWY: L-valine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4474865912 ARGSYN-PWY: L-arginine biosynthesis I (via L-ornithine) 0.6414956308 PWY-7400: L-arginine biosynthesis IV (archaebacteria) 0.6412996445 PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 0.6385819631 PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|unclassified 0.5568075099 TRNA-CHARGING-PWY: tRNA charging 0.6375131192 TRNA-CHARGING-PWY: tRNA charging|unclassified 0.6854401222 PWY-2942: L-lysine biosynthesis III 0.6355334693 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 0.6287071244 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose)|unclassified 0.5899663222 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 0.6261566400 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|unclassified 0.5752116588 PWY-5154: L-arginine biosynthesis III (via N-acetyl-L-citrulline) 0.6219637759 PWY-5667: CDP-diacylglycerol biosynthesis I 0.6184247085 PWY0-1319: CDP-diacylglycerol biosynthesis II 0.6184247085 PWY-4984: urea cycle 0.6169678584 GALACTUROCAT-PWY: D-galacturonate degradation I 0.6155454651 GLUCONEO-PWY: gluconeogenesis I 0.6097483835 PWY-7242: D-fructuronate degradation 0.6047601042 PWY66-400: glycolysis VI (metazoan) 0.5953282968 PWY66-400: glycolysis VI (metazoan)|unclassified 0.7319438937 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 0.5929086025 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|unclassified 0.5231812962 GLUCUROCAT-PWY: superpathway of β-D-glucuronide and D-glucuronate degradation 0.5892583995 PWY-6507: 4-deoxy-L-threo-hex-4-enopyranuronate degradation 0.5891923252 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis 0.5800689638 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.6352855412 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis 0.5791005367 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|unclassified 0.7657262160 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4844026954 CITRULBIO-PWY: L-citrulline biosynthesis 0.5746384819 CITRULBIO-PWY: L-citrulline biosynthesis|unclassified 0.6983775548 GLUTORN-PWY: L-ornithine biosynthesis 0.5737279670 GLUTORN-PWY: L-ornithine biosynthesis|unclassified 0.7259810792 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched amino acid biosynthesis 0.5659432356 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle) 0.5629251602 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle)|unclassified 0.7811139022 ANAEROFRUCAT-PWY: homolactic fermentation 0.5529648778 ANAEROFRUCAT-PWY: homolactic fermentation|unclassified 0.6321096643 PWY-6151: S-adenosyl-L-methionine cycle I 0.5403702745 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate) 0.5368994034 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate)|unclassified 0.5621927227 PWY-6124: inosine-5'-phosphate biosynthesis II 0.5367610750 PWY-6124: inosine-5'-phosphate biosynthesis II|unclassified 0.8526247684 PWY-3781: aerobic respiration I (cytochrome c) 0.5253470793 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli) 0.5247475808 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli)|unclassified 0.5991931723 PWY-5484: glycolysis II (from fructose 6-phosphate) 0.5232838036 PWY-5484: glycolysis II (from fructose 6-phosphate)|unclassified 0.5656685670 PWY-6123: inosine-5'-phosphate biosynthesis I 0.5122016014 PWY-6123: inosine-5'-phosphate biosynthesis I|unclassified 0.5968206076 PWY-5104: L-isoleucine biosynthesis IV 0.5007769446 PWY-5104: L-isoleucine biosynthesis IV|unclassified 0.6810528617 PWY-5686: UMP biosynthesis 0.4964446730 PWY-5686: UMP biosynthesis|unclassified 0.8232470989 PWY-5103: L-isoleucine biosynthesis III 0.4921050670 PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I 0.4885886187 PWY-7184: pyrimidine deoxyribonucleotides de novo biosynthesis I 0.4847543835 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis 0.4784358316 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis|unclassified 0.8048549631 RHAMCAT-PWY: L-rhamnose degradation I 0.4755226713 PWY-6892: thiazole biosynthesis I (E. coli) 0.4711261280 PWY-4981: L-proline biosynthesis II (from arginine) 0.4473155221 PWY-5101: L-isoleucine biosynthesis II 0.4351699062 PWY-5101: L-isoleucine biosynthesis II|unclassified 0.6072080575 THISYN-PWY: superpathway of thiamin diphosphate biosynthesis I 0.4073334953 PWY66-389: phytol degradation 0.3781139043 PWY66-389: phytol degradation|unclassified 0.5909926864 PWY-7316: dTDP-N-acetylviosamine biosynthesis 0.3738574699 PWY-7316: dTDP-N-acetylviosamine biosynthesis|unclassified 0.7469292732 PWY-841: superpathway of purine nucleotides de novo biosynthesis I 0.3627072572 PWY-6628: superpathway of L-phenylalanine biosynthesis 0.3620443029 HISDEG-PWY: L-histidine degradation I 0.3510011972 HISDEG-PWY: L-histidine degradation I|unclassified 0.6976785226 PWY-7237: myo-, chiro- and scillo-inositol degradation 0.3499756734 PWY-7237: myo-, chiro- and scillo-inositol degradation|unclassified 0.7602274814 COMPLETE-ARO-PWY: superpathway of aromatic amino acid biosynthesis 0.3296546460 ARO-PWY: chorismate biosynthesis I 0.3020427360 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast) 0.3010870920 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast)|unclassified 0.7435918988 GALACT-GLUCUROCAT-PWY: superpathway of hexuronide and hexuronate degradation 0.3005935746 PWY-6897: thiamin salvage II 0.2992288449 PWY-6897: thiamin salvage II|unclassified 0.7362566832 PWY-6549: L-glutamine biosynthesis III 0.2969119691 PWY-6549: L-glutamine biosynthesis III|unclassified 0.6763019716 PWY-6163: chorismate biosynthesis from 3-dehydroquinate 0.2946783111 PWY-6163: chorismate biosynthesis from 3-dehydroquinate|unclassified 0.7208464003 DAPLYSINESYN-PWY: L-lysine biosynthesis I 0.2849725056 PWY-6527: stachyose degradation 0.2761775902 PWY-6527: stachyose degradation|unclassified 0.6474925155 PWY-6305: putrescine biosynthesis IV 0.2647906026 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 0.2605878328 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|unclassified 0.6792828969 PWY-6630: superpathway of L-tyrosine biosynthesis 0.2584375055 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli) 0.2564058136 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli)|unclassified 0.6886879629 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase) 0.2258720112 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase)|unclassified 0.5935111776 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 0.2141973679 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)|unclassified 0.5817509535 PWY-7211: superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.2125679983 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate) 0.2070836038 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate)|unclassified 0.6521562750 PANTO-PWY: phosphopantothenate biosynthesis I 0.2047096172 PWY-5690: TCA cycle II (plants and fungi) 0.1925496427 PWY-5690: TCA cycle II (plants and fungi)|unclassified 0.5638592212 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 0.1879903136 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|unclassified 0.6488239422 PWY-5723: Rubisco shunt 0.1878601752 PWY0-1061: superpathway of L-alanine biosynthesis 0.1833991125 PWY0-1061: superpathway of L-alanine biosynthesis|unclassified 0.6113149614 PWY-6737: starch degradation V 0.1775245719 PWY-6737: starch degradation V|unclassified 0.5662333815 METHGLYUT-PWY: superpathway of methylglyoxal degradation 0.1758921917 METHGLYUT-PWY: superpathway of methylglyoxal degradation|unclassified 0.6300006536 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 0.1756637712 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|unclassified 0.6382191526 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 0.1756637712 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|unclassified 0.6382191526 PWY-7115: C4 photosynthetic carbon assimilation cycle, NAD-ME type 0.1576810258 P441-PWY: superpathway of N-acetylneuraminate degradation 0.1475879854 PWY-6609: adenine and adenosine salvage III 0.1457194661 DENOVOPURINE2-PWY: superpathway of purine nucleotides de novo biosynthesis II 0.1364394848 PWY-724: superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 0.1358321228 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii) 0.1346788027 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii)|unclassified 0.5841091090 PWY-3001: superpathway of L-isoleucine biosynthesis I 0.1326951262 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic) 0.1319034824 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic)|unclassified 0.5700803123 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic) 0.1319034824 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic)|unclassified 0.5700803123 PWY-6606: guanosine nucleotides degradation II 0.1283318812 P185-PWY: formaldehyde assimilation III (dihydroxyacetone cycle) 0.1276404619 KETOGLUCONMET-PWY: ketogluconate metabolism 0.1213374781 KETOGLUCONMET-PWY: ketogluconate metabolism|unclassified 0.5603984284 PWY-5941: glycogen degradation II (eukaryotic) 0.1156827512 PWY-5941: glycogen degradation II (eukaryotic)|unclassified 0.4847935053 P161-PWY: acetylene degradation 0.1124589462 P161-PWY: acetylene degradation|unclassified 0.5493717544 PWY-6595: superpathway of guanosine nucleotides degradation (plants) 0.1096849710 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 0.1083802167 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|unclassified 0.5522187266 PWY-6435: 4-hydroxybenzoate biosynthesis V 0.1012235264 PWY-6435: 4-hydroxybenzoate biosynthesis V|unclassified 0.5059704651 PWY-5464: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 0.0943219487 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes) 0.0896062429 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes)|unclassified 0.5449003984 THRESYN-PWY: superpathway of L-threonine biosynthesis 0.0880911967 THRESYN-PWY: superpathway of L-threonine biosynthesis|unclassified 0.4933749597 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes) 0.0839053428 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes)|unclassified 0.5050224912 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 0.0734987862 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|unclassified 0.4613816014 FAO-PWY: fatty acid β-oxidation I 0.0684187167 FAO-PWY: fatty acid β-oxidation I|unclassified 0.4353102033 PWY-5136: fatty acid β-oxidation II (peroxisome) 0.0675157236 PWY-5136: fatty acid β-oxidation II (peroxisome)|unclassified 0.4302668752 PWY-7007: methyl ketone biosynthesis 0.0643619401 PWY-7007: methyl ketone biosynthesis|unclassified 0.4147405141 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation 0.0635854128 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation|unclassified 0.4031493519 PWY-6769: rhamnogalacturonan type I degradation I (fungi) 0.0597995848 PWY-6769: rhamnogalacturonan type I degradation I (fungi)|unclassified 0.4431377668 PWY-7094: fatty acid salvage 0.0581624762 PWY-7094: fatty acid salvage|unclassified 0.4168615380 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine) 0.0576428302 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine)|unclassified 0.4274347854 GLUDEG-I-PWY: GABA shunt 0.0527768994 GLUDEG-I-PWY: GABA shunt|unclassified 0.4535881083 PWY0-1297: superpathway of purine deoxyribonucleosides degradation 0.0489030555 PWY-7234: inosine-5'-phosphate biosynthesis III 0.0471536988 PWY-7234: inosine-5'-phosphate biosynthesis III|unclassified 0.4527816486 PWY-5173: superpathway of acetyl-CoA biosynthesis 0.0383539552 PWY-5173: superpathway of acetyl-CoA biosynthesis|unclassified 0.3998884176 PWY-6731: starch degradation III 0.0360080518 PWY-6731: starch degradation III|unclassified 0.4004561673 PWY-4041: γ-glutamyl cycle 0.0280380758 PWY-4041: γ-glutamyl cycle|unclassified 0.3875179204 PWY-7398: coumarins biosynthesis (engineered) 0.0273374808 PWY-7398: coumarins biosynthesis (engineered)|unclassified 0.3480035826 GLYOXYLATE-BYPASS: glyoxylate cycle 0.0201752882 GLYOXYLATE-BYPASS: glyoxylate cycle|unclassified 0.3649358775 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation 0.0193104917 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation|unclassified 0.3434921887