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view test-data/humann2_fasta_pathcoverage.tsv @ 9:7d2be77d5b83 draft
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| author | bebatut |
|---|---|
| date | Thu, 31 Mar 2016 03:35:17 -0400 |
| parents | 947012405a6e |
| children |
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# Pathway humann2_Coverage PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I 0.9020814293 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I|unclassified 0.9030576986 PWY-3841: folate transformations II 0.8955142224 PWY-3841: folate transformations II|unclassified 0.8386297539 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis 0.8729365703 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis|unclassified 0.6700031759 PWY-7208: superpathway of pyrimidine nucleobases salvage 0.8699779413 PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 0.7889809441 COA-PWY-1: coenzyme A biosynthesis II (mammalian) 0.8502270732 PWY-7221: guanosine ribonucleotides de novo biosynthesis 0.8478125761 CALVIN-PWY: Calvin-Benson-Bassham cycle 0.8337497664 CALVIN-PWY: Calvin-Benson-Bassham cycle|unclassified 0.8467986609 PWY-1042: glycolysis IV (plant cytosol) 0.8282950402 PWY-1042: glycolysis IV (plant cytosol)|unclassified 0.8122174222 PWY66-422: D-galactose degradation V (Leloir pathway) 0.8275835635 PWY66-422: D-galactose degradation V (Leloir pathway)|unclassified 0.7060002496 PWY66-422: D-galactose degradation V (Leloir pathway)|g__Bacteroides.s__Bacteroides_stercoris 0.6690556466 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I 0.8224263577 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I|unclassified 0.8552022126 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 0.8214158026 PWY-5100: pyruvate fermentation to acetate and lactate II 0.8196052821 PWY-5100: pyruvate fermentation to acetate and lactate II|unclassified 0.7310709305 HOMOSER-METSYN-PWY: L-methionine biosynthesis I 0.8043658245 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|unclassified 0.6961656540 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 0.7998857363 PWY-5505: L-glutamate and L-glutamine biosynthesis 0.7936139721 PWY-5505: L-glutamate and L-glutamine biosynthesis|unclassified 0.8162544880 PWY-5505: L-glutamate and L-glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5120585833 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 0.7926894810 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 0.8603900244 PWY-7219: adenosine ribonucleotides de novo biosynthesis 0.7924286530 PWY-7219: adenosine ribonucleotides de novo biosynthesis|unclassified 0.8967923793 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 0.7875449421 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.8147061027 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 0.7875449421 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.8147061027 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 0.7856307189 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 0.8490126850 PWY-6703: preQ0 biosynthesis 0.7717283843 PWY-6703: preQ0 biosynthesis|unclassified 0.7507935280 PWY-5659: GDP-mannose biosynthesis 0.7545745035 PWY-5659: GDP-mannose biosynthesis|unclassified 0.3471610201 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 0.7510053197 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified 0.4958048604 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 0.7506671584 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|unclassified 0.7749176544 VALSYN-PWY: L-valine biosynthesis 0.7506671584 VALSYN-PWY: L-valine biosynthesis|unclassified 0.7749176544 PWY-6936: seleno-amino acid biosynthesis 0.7463679468 PWY-6936: seleno-amino acid biosynthesis|unclassified 0.7449808595 HSERMETANA-PWY: L-methionine biosynthesis III 0.7336908972 HSERMETANA-PWY: L-methionine biosynthesis III|unclassified 0.5781347832 PWY-5030: L-histidine degradation III 0.7336504793 PWY-5030: L-histidine degradation III|unclassified 0.7224140937 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis 0.7290698848 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.5623335314 GLUCONEO-PWY: gluconeogenesis I 0.7277918451 PWY-4984: urea cycle 0.7268257420 PWY-7400: L-arginine biosynthesis IV (archaebacteria) 0.7262941020 ARGSYN-PWY: L-arginine biosynthesis I (via L-ornithine) 0.7233574473 GALACTUROCAT-PWY: D-galacturonate degradation I 0.7121932522 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis 0.7051730599 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|unclassified 0.8058497596 PWY-5097: L-lysine biosynthesis VI 0.6916200935 PWY-5097: L-lysine biosynthesis VI|unclassified 0.7269447790 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 0.6899686638 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose)|unclassified 0.8050612921 PWY-7242: D-fructuronate degradation 0.6896244381 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched amino acid biosynthesis 0.6893189444 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched amino acid biosynthesis|unclassified 0.6775982335 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle) 0.6861940520 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle)|unclassified 0.7455498075 PWY-6124: inosine-5'-phosphate biosynthesis II 0.6826421717 PWY-6124: inosine-5'-phosphate biosynthesis II|unclassified 0.8336995150 PWY-6507: 4-deoxy-L-threo-hex-4-enopyranuronate degradation 0.6802839251 CITRULBIO-PWY: L-citrulline biosynthesis 0.6746810344 CITRULBIO-PWY: L-citrulline biosynthesis|unclassified 0.6454139515 PWY-5686: UMP biosynthesis 0.6737531535 PWY-5686: UMP biosynthesis|unclassified 0.7968458014 PWY-6151: S-adenosyl-L-methionine cycle I 0.6737454821 TRNA-CHARGING-PWY: tRNA charging 0.6691861209 TRNA-CHARGING-PWY: tRNA charging|unclassified 0.6792780468 PWY-2942: L-lysine biosynthesis III 0.6657732550 PWY-2942: L-lysine biosynthesis III|unclassified 0.7189492691 PWY66-400: glycolysis VI (metazoan) 0.6634800119 PWY66-400: glycolysis VI (metazoan)|unclassified 0.7096857422 ANAEROFRUCAT-PWY: homolactic fermentation 0.6464300682 ANAEROFRUCAT-PWY: homolactic fermentation|unclassified 0.7801148737 PWY-7111: pyruvate fermentation to isobutanol (engineered) 0.6438814029 PWY-7111: pyruvate fermentation to isobutanol (engineered)|unclassified 0.7892059500 PWY-5154: L-arginine biosynthesis III (via N-acetyl-L-citrulline) 0.6434636327 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 0.6370346300 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|unclassified 0.7284031659 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch) 0.6354032054 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch)|unclassified 0.8029823631 GLUCUROCAT-PWY: superpathway of β-D-glucuronide and D-glucuronate degradation 0.6321855739 PWY-5103: L-isoleucine biosynthesis III 0.6293494410 PWY-5103: L-isoleucine biosynthesis III|unclassified 0.6403851357 PWY-5104: L-isoleucine biosynthesis IV 0.6292081440 PWY-5104: L-isoleucine biosynthesis IV|unclassified 0.6129291732 PWY-6123: inosine-5'-phosphate biosynthesis I 0.6266173025 PWY-6123: inosine-5'-phosphate biosynthesis I|unclassified 0.7982649236 PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 0.6261614182 PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|unclassified 0.6847491017 PWY-7184: pyrimidine deoxyribonucleotides de novo biosynthesis I 0.6244765971 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis 0.6222769007 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis|unclassified 0.7848769794 GLUTORN-PWY: L-ornithine biosynthesis 0.6190679362 GLUTORN-PWY: L-ornithine biosynthesis|unclassified 0.6607560005 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate) 0.6074048961 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate)|unclassified 0.7523779429 PWY-5484: glycolysis II (from fructose 6-phosphate) 0.5993835016 PWY-5484: glycolysis II (from fructose 6-phosphate)|unclassified 0.7471966903 PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I 0.5980601338 PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I|unclassified 0.6061664934 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 0.5949682218 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|unclassified 0.6885596380 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli) 0.5933622121 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli)|unclassified 0.6452232715 PWY-841: superpathway of purine nucleotides de novo biosynthesis I 0.5350832856 PWY-6549: L-glutamine biosynthesis III 0.5187905090 PWY-6549: L-glutamine biosynthesis III|unclassified 0.6621423226 PWY-7316: dTDP-N-acetylviosamine biosynthesis 0.5174282651 PWY-7316: dTDP-N-acetylviosamine biosynthesis|unclassified 0.7081786753 PWY66-389: phytol degradation 0.5140188316 PWY66-389: phytol degradation|unclassified 0.5942366101 PWY4FS-7: phosphatidylglycerol biosynthesis I (plastidic) 0.5127506424 PWY4FS-8: phosphatidylglycerol biosynthesis II (non-plastidic) 0.5127506424 RHAMCAT-PWY: L-rhamnose degradation I 0.5108527090 HISDEG-PWY: L-histidine degradation I 0.5031112522 HISDEG-PWY: L-histidine degradation I|unclassified 0.6284442371 PWY-6628: superpathway of L-phenylalanine biosynthesis 0.5010631179 PWY-7237: myo-, chiro- and scillo-inositol degradation 0.4937206900 PWY-7237: myo-, chiro- and scillo-inositol degradation|unclassified 0.7012383014 PWY-5101: L-isoleucine biosynthesis II 0.4889865976 PWY-5101: L-isoleucine biosynthesis II|unclassified 0.5999167857 PHOSLIPSYN-PWY: superpathway of phospholipid biosynthesis I (bacteria) 0.4804450875 COMPLETE-ARO-PWY: superpathway of aromatic amino acid biosynthesis 0.4720217027 COMPLETE-ARO-PWY: superpathway of aromatic amino acid biosynthesis|unclassified 0.6691876639 GALACT-GLUCUROCAT-PWY: superpathway of hexuronide and hexuronate degradation 0.4616579256 PWY-6163: chorismate biosynthesis from 3-dehydroquinate 0.4592445787 PWY-6163: chorismate biosynthesis from 3-dehydroquinate|unclassified 0.6525409722 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast) 0.4569830342 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast)|unclassified 0.6892617825 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 0.4546494887 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)|unclassified 0.6045879393 PWY-6897: thiamin salvage II 0.4504159136 PWY-6897: thiamin salvage II|unclassified 0.6781354483 ARO-PWY: chorismate biosynthesis I 0.4427999196 ARO-PWY: chorismate biosynthesis I|unclassified 0.6469864864 PWY-6527: stachyose degradation 0.4357088438 PWY-6527: stachyose degradation|unclassified 0.6394514786 PWY-5667: CDP-diacylglycerol biosynthesis I 0.4314096708 PWY-5667: CDP-diacylglycerol biosynthesis I|unclassified 0.3738566572 PWY0-1319: CDP-diacylglycerol biosynthesis II 0.4314096708 PWY0-1319: CDP-diacylglycerol biosynthesis II|unclassified 0.3738566572 DAPLYSINESYN-PWY: L-lysine biosynthesis I 0.4302828994 DAPLYSINESYN-PWY: L-lysine biosynthesis I|unclassified 0.5287826956 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate) 0.4207747466 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate)|unclassified 0.6175654679 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli) 0.4200227519 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli)|unclassified 0.6320075169 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 0.4158432681 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|unclassified 0.6234076988 PWY-7211: superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.4129615520 PWY-6305: putrescine biosynthesis IV 0.4091798981 PWY-6630: superpathway of L-tyrosine biosynthesis 0.4060436513 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase) 0.4037102644 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase)|unclassified 0.5341809318 PWY-5690: TCA cycle II (plants and fungi) 0.4010520280 PWY-5690: TCA cycle II (plants and fungi)|unclassified 0.5118025880 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 0.3466184654 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|unclassified 0.5904674680 PWY0-1061: superpathway of L-alanine biosynthesis 0.3320094603 PWY0-1061: superpathway of L-alanine biosynthesis|unclassified 0.5276625962 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 0.3314268723 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|unclassified 0.5780703738 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 0.3314268723 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|unclassified 0.5780703738 PWY-6737: starch degradation V 0.3253192035 PWY-6737: starch degradation V|unclassified 0.4862456794 DENOVOPURINE2-PWY: superpathway of purine nucleotides de novo biosynthesis II 0.3190137611 METHGLYUT-PWY: superpathway of methylglyoxal degradation 0.3161361780 METHGLYUT-PWY: superpathway of methylglyoxal degradation|unclassified 0.5586973417 P441-PWY: superpathway of N-acetylneuraminate degradation 0.3019954557 P441-PWY: superpathway of N-acetylneuraminate degradation|unclassified 0.4792394160 PWY-7115: C4 photosynthetic carbon assimilation cycle, NAD-ME type 0.3008650838 PPGPPMET-PWY: ppGpp biosynthesis 0.2952768423 PWY-724: superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 0.2877335871 PWY-724: superpathway of L-lysine, L-threonine and L-methionine biosynthesis II|unclassified 0.5548730216 PWY-3001: superpathway of L-isoleucine biosynthesis I 0.2859572809 PWY-3001: superpathway of L-isoleucine biosynthesis I|unclassified 0.5276279473 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii) 0.2626512224 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii)|unclassified 0.5172238273 PWY-5265: peptidoglycan biosynthesis II (staphylococci) 0.2545518546 PWY-5265: peptidoglycan biosynthesis II (staphylococci)|unclassified 0.5027532562 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic) 0.2490218661 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic)|unclassified 0.4864231295 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic) 0.2490218661 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic)|unclassified 0.4864231295 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 0.2483779252 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|unclassified 0.4658366070 PWY-5941: glycogen degradation II (eukaryotic) 0.2386207694 PWY-5941: glycogen degradation II (eukaryotic)|unclassified 0.4440353865 KETOGLUCONMET-PWY: ketogluconate metabolism 0.2366729714 KETOGLUCONMET-PWY: ketogluconate metabolism|unclassified 0.4754618892 PWY-5464: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 0.2360804781 PWY-5464: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle|unclassified 0.4606470990 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 0.2282059131 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|unclassified 0.4862823810 PWY-6435: 4-hydroxybenzoate biosynthesis V 0.2267113835 PWY-6435: 4-hydroxybenzoate biosynthesis V|unclassified 0.4743748539 P161-PWY: acetylene degradation 0.2220696908 P161-PWY: acetylene degradation|unclassified 0.4709193837 P185-PWY: formaldehyde assimilation III (dihydroxyacetone cycle) 0.2137629302 P185-PWY: formaldehyde assimilation III (dihydroxyacetone cycle)|unclassified 0.4065691125 PWY-6606: guanosine nucleotides degradation II 0.2100300462 PWY-6606: guanosine nucleotides degradation II|unclassified 0.4531498547 THRESYN-PWY: superpathway of L-threonine biosynthesis 0.2063425387 THRESYN-PWY: superpathway of L-threonine biosynthesis|unclassified 0.4550260621 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes) 0.2015579371 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes)|unclassified 0.4575021940 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes) 0.1970239978 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes)|unclassified 0.4324206474 PWY-6595: superpathway of guanosine nucleotides degradation (plants) 0.1957070792 PWY-6595: superpathway of guanosine nucleotides degradation (plants)|unclassified 0.4328200899 PWY-6471: peptidoglycan biosynthesis IV (Enterococcus faecium) 0.1915932820 PWY-6471: peptidoglycan biosynthesis IV (Enterococcus faecium)|unclassified 0.4430169015 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 0.1736186426 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|unclassified 0.3712304437 PWY-5136: fatty acid β-oxidation II (peroxisome) 0.1635158251 PWY-5136: fatty acid β-oxidation II (peroxisome)|unclassified 0.3825037170 FAO-PWY: fatty acid β-oxidation I 0.1629336873 FAO-PWY: fatty acid β-oxidation I|unclassified 0.3812966928 PWY-7007: methyl ketone biosynthesis 0.1585290341 PWY-7007: methyl ketone biosynthesis|unclassified 0.3575980290 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation 0.1564847406 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation|unclassified 0.3564574827 PWY-7094: fatty acid salvage 0.1448537925 PWY-7094: fatty acid salvage|unclassified 0.3591378214 PWY-6769: rhamnogalacturonan type I degradation I (fungi) 0.1409857905 PWY-6769: rhamnogalacturonan type I degradation I (fungi)|unclassified 0.3545567861 PWY-7234: inosine-5'-phosphate biosynthesis III 0.1394702174 PWY-7234: inosine-5'-phosphate biosynthesis III|unclassified 0.4054787249 GLUDEG-I-PWY: GABA shunt 0.1373812518 GLUDEG-I-PWY: GABA shunt|unclassified 0.3674207289 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine) 0.1343974315 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine)|unclassified 0.3401921160 PWY1F-823: leucopelargonidin and leucocyanidin biosynthesis 0.1175966331 PWY1F-823: leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.3155346285 PWY-6731: starch degradation III 0.1123018447 PWY-6731: starch degradation III|unclassified 0.3308484542 PWY-5173: superpathway of acetyl-CoA biosynthesis 0.1094164471 PWY-5173: superpathway of acetyl-CoA biosynthesis|unclassified 0.3112277169 P241-PWY: coenzyme B biosynthesis 0.0921843323 P241-PWY: coenzyme B biosynthesis|unclassified 0.2829168302 PWY-4041: γ-glutamyl cycle 0.0908494984 PWY-4041: γ-glutamyl cycle|unclassified 0.3035550790 PWY-7398: coumarins biosynthesis (engineered) 0.0834258190 PWY-7398: coumarins biosynthesis (engineered)|unclassified 0.2678841505 GLYOXYLATE-BYPASS: glyoxylate cycle 0.0722295747 GLYOXYLATE-BYPASS: glyoxylate cycle|unclassified 0.2683685093 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation 0.0672540914 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation|unclassified 0.2519292377 SO4ASSIM-PWY: sulfate reduction I (assimilatory) 0.0392546786 SO4ASSIM-PWY: sulfate reduction I (assimilatory)|unclassified 0.1972210867