diff download_datasets.sh @ 0:13df6c6647fb draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/group_humann2_uniref_abundances_to_GO commit 313952cc4a20e8fb82380bfbf5ede26217197719

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/download_datasets.sh	Mon Feb 22 07:11:20 2016 -0500
@@ -0,0 +1,30 @@
+#!/bin/bash
+
+MY_PATH=`dirname "$0"`
+data_dir=$MY_PATH"/data/"
+
+if [ ! -d $data_dir ]; then
+    mkdir $data_dir
+fi
+
+cd $data_dir
+
+echo "Download required databases"
+echo "==========================="
+
+if [ ! -f "go.obo" ]; then
+    echo "Download basic Gene Ontology..."
+    wget http://geneontology.org/ontology/go.obo
+fi 
+if [ ! -f "goslim_metagenomics.obo" ]; then
+    echo "Download metagenomic slim Gene Ontology..."
+    wget http://www.geneontology.org/ontology/subsets/goslim_metagenomics.obo
+fi
+
+if [ ! -f "map_infogo1000_uniref50.txt" ]; then
+    echo "Download humann2 correspondance between Uniref50 and GO"
+    wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
+    gunzip map_infogo1000_uniref50.txt.gz
+fi
+
+echo ""
\ No newline at end of file