Mercurial > repos > bebatut > extract_min_max_lines

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/extract_min_max_lines commit 718c006213709b631862b8d6d655fafc92e79ef7-dirty
author bebatut
date Fri, 15 Apr 2016 07:58:25 -0400
parents 42e4aee6b1fa
children
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1 <tool id="extract_min_max_lines" name="Extract lines corresponding" version="0.1.0">
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2 <description>to minimum and maximum values of a column</description>
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4 <requirements>
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5 </requirements>
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7 <stdio>
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8 </stdio>
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10 <version_command></version_command>
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12 <command><![CDATA[
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13 python $__tool_directory__/extract_min_max_lines.py
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14 --input_file $input_file
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15 --output_file $output_file
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16 --column_id $column_id
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17 --extraction_type $extraction_type
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18 --extraction_nb $extraction_nb
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19 ]]></command>
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21 <inputs>
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22 <param name="input_file" type="data" format="tabular,tsv,csv" label="Input file" help="File in tabular format with tab-separated columns (--input_file)"/>
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24 <param name="column_id" type="data_column" data_ref="input_file" label="Column containing data to extract minimum or maximum values" multiple="false" numerical="true" help="(--column_id)"/>
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26 <param name="extraction_type" label="Type of values to extract lines" type="select" help="(--extraction_type)">
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27 <option value="min" selected="True">Minimal values</option>
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28 <option value="max">Maximal values</option>
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29 </param>
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31 <param name="extraction_nb" type="integer" value="10" label="Number of lines to extract" help="(--extraction_nb)"/>
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32 </inputs>
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34 <outputs>
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35 <data name="output_file" format="tabular"
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36 label="${tool.name} on ${on_string}: Extracted lines" />
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37 </outputs>
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39 <tests>
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40 <test>
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41 <param name="input_file" value="input_file.tabular"/>
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42 <param name="column_id" value="3"/>
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43 <param name="extraction_type" value="min"/>
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44 <param name="extraction_nb" value="10"/>
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45 <output name="output_file" file="output_test_col_3_min.tabular"/>
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46 </test>
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47 <test>
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48 <param name="input_file" value="input_file.tabular"/>
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49 <param name="column_id" value="3"/>
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50 <param name="extraction_type" value="max"/>
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51 <param name="extraction_nb" value="10"/>
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52 <output name="output_file" file="output_test_col_3_max.tabular"/>
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53 </test>
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54 <test>
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55 <param name="input_file" value="input_file.tabular"/>
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56 <param name="column_id" value="4"/>
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57 <param name="extraction_type" value="min"/>
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58 <param name="extraction_nb" value="10"/>
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59 <output name="output_file" file="output_test_col_4_min.tabular"/>
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60 </test>
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61 <test>
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62 <param name="input_file" value="input_file.tabular"/>
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63 <param name="column_id" value="4"/>
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64 <param name="extraction_type" value="max"/>
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65 <param name="extraction_nb" value="10"/>
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66 <output name="output_file" file="output_test_col_4_max.tabular"/>
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67 </test>
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68 </tests>
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70 <help><![CDATA[
1
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71 **What it does**
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72
1
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73 This tool extract a variable number of lines corresponding to minimum or maximum values of a chosen column.
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74
1
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75 The file must be in tabular format with tabular separated columns. To chosen column to extract minimum or maximum values must be data columns.
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76 ]]></help>
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78 <citations>
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79 </citations>
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80 </tool>