# HG changeset patch
# User bebatut
# Date 1497335180 14400
# Node ID b39e50b428cbe51fcff52848aecf3b5cb25cc8b9
# Parent  b93a1196602475450474857463b4ebd85216e365
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit b4a2d79d49c731753ff38ce6f27a2a97f5af28b9-dirty

diff -r b93a11966024 -r b39e50b428cb data_manager/data_manager_sortmerna_download.py
--- a/data_manager/data_manager_sortmerna_download.py	Mon Jun 12 11:36:09 2017 -0400
+++ b/data_manager/data_manager_sortmerna_download.py	Tue Jun 13 02:26:20 2017 -0400
@@ -4,6 +4,7 @@
 import argparse
 import json
 import os
+import shutil
 import tarfile
 import requests
 import subprocess
@@ -134,7 +135,7 @@
         fasta_filepath = os.path.join(filedir, "%s.fasta" % db_name)
         indexed_filepath = os.path.join(filedir, db_name)
         # Move the fasta file
-        os.rename(input_filepath, fasta_filepath)
+        shutil.move(input_filepath, fasta_filepath)
         # Index the file with indexdb_rna
         command = "indexdb_rna --ref %s,%s" % (
             fasta_filepath,
@@ -210,7 +211,6 @@
         data_tables,
         args.version,
         target_dir)
-    print(os.listdir(target_dir))
 
     # Write output JSON
     print("Outputting JSON")
diff -r b93a11966024 -r b39e50b428cb data_manager/data_manager_sortmerna_download.xml
--- a/data_manager/data_manager_sortmerna_download.xml	Mon Jun 12 11:36:09 2017 -0400
+++ b/data_manager/data_manager_sortmerna_download.xml	Tue Jun 13 02:26:20 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_sortmerna_download" name="Download SortMeRNA" version="@VERSION@.2" tool_type="manage_data">
+<tool id="data_manager_sortmerna_download" name="Download SortMeRNA" version="@VERSION@.1" tool_type="manage_data">
     <description>reference databases</description>
     <macros>
         <import>macros.xml</import>