# HG changeset patch
# User bebatut
# Date 1488286510 18000
# Node ID a4b5d0fcd2b2f32c9caf2a800a04edc239f84475
# Parent  dbfade666d420a3364cdae36d5ce46448d401a70
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit b'3deaa3adf381c1f3f6134ef6a36074d443f7e3fc\n'-dirty

diff -r dbfade666d42 -r a4b5d0fcd2b2 data_manager/data_manager_metaphlan2_download.py
--- a/data_manager/data_manager_metaphlan2_download.py	Tue Feb 21 08:49:45 2017 -0500
+++ b/data_manager/data_manager_metaphlan2_download.py	Tue Feb 28 07:55:10 2017 -0500
@@ -95,9 +95,7 @@
 
     """
     today = datetime.date.today()
-    db_target_dir = os.path.join(target_dir, build)
-    os.makedirs(db_target_dir)
-    cmd = "download_metaphlan2_db.py --output %s" % (db_target_dir)
+    cmd = "download_metaphlan2_db.py --output %s" % (target_dir)
     subprocess.check_call(cmd, shell=True)
     add_data_table_entry(
         data_tables,
@@ -117,7 +115,6 @@
     parser.add_option('--database', help="Database name")
     options, args = parser.parse_args()
     print("args   : %s" % args)
-    
 
     # Check for JSON file
     if len(args) != 1:
diff -r dbfade666d42 -r a4b5d0fcd2b2 shed.yml
--- a/shed.yml	Tue Feb 21 08:49:45 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-name: data_manager_metaphlan2_database_downloader
-owner: bebatut
-description: "MetaPhlAn for Metagenomic Phylogenetic Analysis"
-homepage_url: "https://bitbucket.org/biobakery/metaphlan2/"
-long_description: |
-    MetaPhlAn is a computational tool for profiling the composition of microbial
-    communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun
-    sequencing data with species level resolution
-remote_repository_url: "https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_metaphlan2_database_downloader"
-type: unrestricted
-categories:
-- Metagenomics
-- Data Managers
\ No newline at end of file
diff -r dbfade666d42 -r a4b5d0fcd2b2 tool-data/metaphlan2_database.loc.sample
--- a/tool-data/metaphlan2_database.loc.sample	Tue Feb 21 08:49:45 2017 -0500
+++ b/tool-data/metaphlan2_database.loc.sample	Tue Feb 28 07:55:10 2017 -0500
@@ -1,4 +1,4 @@
 #This is a sample file distributed with Galaxy that enables tools
 #to use a directory of metagenomics files.  
 #file has this format (white space characters are TAB characters)
-#02_16_2014	 MetaPhlAn2 clade-specific marker genes	db_v20	/path/to/data
\ No newline at end of file
+#02_16_2014	MetaPhlAn2 clade-specific marker genes	db_v20	/path/to/data