# HG changeset patch
# User bebatut
# Date 1487676356 18000
# Node ID 27d7d61ca8dfeab7da02df22612b931826d4653d
# Parent  6ef96ebbea92b24a77ba1c453bd32e50698cdec2
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit bad4bb2f4bae0689a583c96d54193b937a340bb8-dirty

diff -r 6ef96ebbea92 -r 27d7d61ca8df data_manager/data_manager_metaphlan2_download.py
--- a/data_manager/data_manager_metaphlan2_download.py	Tue Feb 21 05:40:07 2017 -0500
+++ b/data_manager/data_manager_metaphlan2_download.py	Tue Feb 21 06:25:56 2017 -0500
@@ -105,7 +105,8 @@
         dict(
             dbkey=build,
             value=today.isoformat(),
-            name="MetaPhlAn2 clade-specific marker genes"))
+            name="MetaPhlAn2 clade-specific marker genes"),
+            path=db_target_dir)
 
 
 if __name__ == "__main__":
@@ -147,5 +148,6 @@
     # Write output JSON
     print("Outputting JSON")
     print(str(json.dumps(data_tables)))
-    open(jsonfile, 'wb').write(json.dumps(data_tables))
+    with open(jsonfile, 'wb') as out:
+        out.write(json.dumps(data_tables))
     print("Done.")
diff -r 6ef96ebbea92 -r 27d7d61ca8df data_manager_conf.xml
--- a/data_manager_conf.xml	Tue Feb 21 05:40:07 2017 -0500
+++ b/data_manager_conf.xml	Tue Feb 21 06:25:56 2017 -0500
@@ -10,7 +10,7 @@
                     <move type="directory" relativize_symlinks="True">
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan2/data/${dbkey}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}/metaphlan2/data/</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>