# HG changeset patch
# User bebatut
# Date 1497336434 14400
# Node ID cb9dac6233f2c534f66c030f52dff42fb5eeef8f
# Parent  a0eed08a6b612a5b220c50bcbfd7f3a1197eb3e8
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit 76f55682bf146c34d786bda2a6d3b7f0aed0faa9-dirty

diff -r a0eed08a6b61 -r cb9dac6233f2 data_manager/data_manager_humann2_download.py
--- a/data_manager/data_manager_humann2_download.py	Thu Mar 02 09:19:25 2017 -0500
+++ b/data_manager/data_manager_humann2_download.py	Tue Jun 13 02:47:14 2017 -0400
@@ -15,7 +15,7 @@
     "uniref50_diamond": "Full UniRef50",
     "uniref50_ec_filtered_diamond": "EC-filtered UniRef50",
     "uniref50_GO_filtered_rapsearch2": "GO filtered UniRef50 for rapsearch2",
-    "uniref90_diamond": "Full UniRef50",
+    "uniref90_diamond": "Full UniRef90",
     "uniref90_ec_filtered_diamond": "EC-filtered UniRef90",
     "DEMO_diamond": "Demo"
 }
diff -r a0eed08a6b61 -r cb9dac6233f2 data_manager/data_manager_humann2_download.xml
--- a/data_manager/data_manager_humann2_download.xml	Thu Mar 02 09:19:25 2017 -0500
+++ b/data_manager/data_manager_humann2_download.xml	Tue Jun 13 02:47:14 2017 -0400
@@ -1,17 +1,20 @@
-<tool id="data_manager_humann2_download" name="HUMAnN2 download" version="0.9.9" tool_type="manage_data">
+<tool id="data_manager_humann2_download" name="HUMAnN2 download" version="@VERSION@.0" tool_type="manage_data">
     <description>Download HUMAnN2 database</description>
+    <macros>
+        <token name="@VERSION@">0.9.9</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="0.9.9">humann2</requirement>
+        <requirement type="package" version="@VERSION@">humann2</requirement>
     </requirements>
     <stdio>
         <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
         <exit_code range="1:"  level="fatal" description="Error" />
     </stdio>
-    <command interpreter="python">
-        data_manager_humann2_download.py
+    <command>
+        python '$__tool_directory__/data_manager_humann2_download.py'
             --database '$db.database'
-            --build '$db.build'
-            "${out_file}"
+            --build $db.build
+            '${out_file}'
     </command>
     <inputs>
         <conditional name="db">
@@ -38,19 +41,16 @@
         </conditional>
     </inputs>
     <outputs>
-           <data name="out_file" format="data_manager_json" label="${tool.name}"/>
+        <data name="out_file" format="data_manager_json" label="${tool.name}" />
     </outputs>
     <tests>
     </tests>
     <help>
-
 This tool downloads the HUMAnN2 databases.
 
-For details about this tool, please go to http://gemini.readthedocs.org
-
+Read more about the tool at http://huttenhower.sph.harvard.edu/humann2/manual .
     </help>
     <citations>
         <citation type="doi">10.1371/journal.pcbi.1003153</citation>
-        <yield />
     </citations>
 </tool>
diff -r a0eed08a6b61 -r cb9dac6233f2 data_manager/macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/macros.xml	Tue Jun 13 02:47:14 2017 -0400
@@ -0,0 +1,4 @@
+<?xml version="1.0" ?>
+<macros>
+    <token name="@VERSION@">0.9.9</token>
+</macros>
\ No newline at end of file