diff cgatools/tool-data/cg_crr_files.loc.sample @ 17:6a5889dac45b draft

Uploaded

--- a/cgatools/tool-data/cg_crr_files.loc.sample	Thu Jun 14 13:51:46 2012 -0400
+++ b/cgatools/tool-data/cg_crr_files.loc.sample	Mon Jun 18 19:47:01 2012 -0400
@@ -1,12 +1,17 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use .crr reference files.  You will need to download or create 
-#the .crr reference files and then create a cg_crr_files.loc file 
-#similar to this one (store it in this directory) that points to 
-#the location of the files.
-#The cg_crr_files.loc file has this format (white space characters 
-#are TAB characters):
+#This is a sample file distributed with cgatools repository that enables the cgatools
+#functions to use the .crr reference files. After installation download the reference 
+#genome files form Complete Genomics' ftp site:
+#ftp://ftp.completegenomics.com/ReferenceFiles/build37.crr
+#ftp://ftp.completegenomics.com/ReferenceFiles/build36.crr
+#and edit the path for the reference genomes to correspond to their location.
+#
+#Restart your Galaxy instance to ensure the file locations are registered with Galaxy 
+#properly.
+#
+#The cg_crr_files.loc file has this format (white space characters are TAB characters):
 #
 #<value>	<dbkey>	<name>	<path>
 #
-#hg19	hg19	hg19.crr	/Users/bcrain/Documents/hg19.crr
+#hg19	hg19	build 37	/absolute/path/to/build37.crr
+#hg18	hg18	build 36	/absolute/path/to/build36.crr