# HG changeset patch
# User bcrain-completegenomics
# Date 1339519457 14400
# Node ID bfa2fba76192fa078aa3bee3b98f980479c89b89
# Parent  cae65fe42805000782078333f09208fa882cf752
Deleted selected files

diff -r cae65fe42805 -r bfa2fba76192 CG_cgatools/datatypes_conf.xml
--- a/CG_cgatools/datatypes_conf.xml	Tue Jun 12 12:27:03 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,19 +0,0 @@
-<?xml version="1.0"?>
-<datatypes>
-  <datatype_files>
-    <datatype_file name="completegenomics.py"/>
-  </datatype_files>
-
-  <registration>
-    <!-- 
-      Add the following section to datatypes_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
-    -->
-    <!-- Start Complete Genomics Datatypes -->
-    <datatype extension="cg_var" type="galaxy.datatypes.tabular:CG_Var" display_in_upload="true" />
-    <datatype extension="cg_mastervar" type="galaxy.datatypes.tabular:CG_MasterVar" display_in_upload="true" />
-    <datatype extension="cg_gene" type="galaxy.datatypes.tabular:CG_Gene" display_in_upload="true" />
-    <!-- End Complete Genomics Datatypes -->
-  </registration>
-  <sniffers>
-  </sniffers>
-</datatypes>
diff -r cae65fe42805 -r bfa2fba76192 CG_cgatools/tool-data/cg_crr_files.loc.sample
--- a/CG_cgatools/tool-data/cg_crr_files.loc.sample	Tue Jun 12 12:27:03 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,11 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#to use .crr reference files.  You will need to download or create 
-#the .crr reference files and then create a cg_crr_files.loc file 
-#similar to this one (store it in this directory) that points to 
-#the location of the files. The cg_crr_files.loc 
-#file has this format (white space characters are TAB characters):
-#
-#<value>	<dbkey>	<name>	<path>
-#
-#hg19	hg19	hg19.crr	/Users/bcrain/Documents/hg19.crr
-
diff -r cae65fe42805 -r bfa2fba76192 CG_cgatools/tool_data_table_conf.xml.sample
--- a/CG_cgatools/tool_data_table_conf.xml.sample	Tue Jun 12 12:27:03 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-    <!-- 
-         Add the following section to tool_data_table_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
-    -->
-    <!-- Start Location of cgatools crr files -->
-    <table name="cg_crr_files" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/cg_crr_files.loc" />
-    </table>
-    <!-- End Location of cgatools crr files -->