# HG changeset patch
# User bcrain-completegenomics
# Date 1339016651 14400
# Node ID 326dbb82d58be805f74d4405698201cdbed215d6
# Parent  2aa6f84b0e5ce0ff612ea24caf9dfe0c25d770cf
Uploaded

diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/.DS_Store
Binary file cgatools_suite/.DS_Store has changed
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/._datatypes_conf.xml
Binary file cgatools_suite/._datatypes_conf.xml has changed
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/._tool_config.xml.sample.xml
Binary file cgatools_suite/._tool_config.xml.sample.xml has changed
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/._tool_data_table_conf.xml.sample.xml
Binary file cgatools_suite/._tool_data_table_conf.xml.sample.xml has changed
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/tool_config.xml
--- a/cgatools_suite/tool_config.xml	Wed Jun 06 17:00:08 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,20 +0,0 @@
-<?xml version="1.0"?>
-<toolbox>
-    <!-- 
-      Add the following section to tool_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
-    -->
-  <section name="Complete Genomics" id="cgi">
-    <label text="cgatools" id="cgi_cgatools" />
-    <tool file="cgatools/listvariants.xml" />
-    <tool file="cgatools/testvariants.xml" />
-    <tool file="cgatools/listtestvariants.xml" />
-    <tool file="cgatools/join.xml" />
-    <tool file="cgatools/calldiff.xml" />
-    <tool file="cgatools/snpdiff.xml" />
-    <tool file="cgatools/junctiondiff.xml" />
-    <tool file="cgatools/varfilter.xml" />
-    <label text="Perl scripts" id="cgi_perl" />
-    <tool file="cgi_scripts/List_Unique_Variants.xml" />
-    <tool file="cgi_scripts/Calculate_TestVariants_Variant_Frequencies.xml" />
-  </section>
-</toolbox>
\ No newline at end of file
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/tool_config.xml.sample.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cgatools_suite/tool_config.xml.sample.xml	Wed Jun 06 17:04:11 2012 -0400
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<toolbox>
+    <!-- 
+      Add the following section to tool_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
+    -->
+  <section name="Complete Genomics" id="cgi">
+    <label text="cgatools" id="cgi_cgatools" />
+    <tool file="cgatools/listvariants.xml" />
+    <tool file="cgatools/testvariants.xml" />
+    <tool file="cgatools/listtestvariants.xml" />
+    <tool file="cgatools/join.xml" />
+    <tool file="cgatools/calldiff.xml" />
+    <tool file="cgatools/snpdiff.xml" />
+    <tool file="cgatools/junctiondiff.xml" />
+    <tool file="cgatools/varfilter.xml" />
+    <label text="Perl scripts" id="cgi_perl" />
+    <tool file="cgi_scripts/List_Unique_Variants.xml" />
+    <tool file="cgi_scripts/Calculate_TestVariants_Variant_Frequencies.xml" />
+  </section>
+</toolbox>
\ No newline at end of file
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/tool_data_table_conf.xml
--- a/cgatools_suite/tool_data_table_conf.xml	Wed Jun 06 17:00:08 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,12 +0,0 @@
-<tables>
-    <!-- 
-         Add the following section to tool_data_table_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
-    -->
-    <!-- Start Location of cgatools crr files -->
-    <table name="cg_crr_files" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/cg_crr_files.loc" />
-    </table>
-    <!-- End Location of cgatools crr files -->
-</tables>
-
diff -r 2aa6f84b0e5c -r 326dbb82d58b cgatools_suite/tool_data_table_conf.xml.sample.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cgatools_suite/tool_data_table_conf.xml.sample.xml	Wed Jun 06 17:04:11 2012 -0400
@@ -0,0 +1,12 @@
+<tables>
+    <!-- 
+         Add the following section to tool_data_table_conf.xml file in your Galaxy distribution if you are adding Complete Genomics tools manually to your Galaxy instance
+    -->
+    <!-- Start Location of cgatools crr files -->
+    <table name="cg_crr_files" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/cg_crr_files.loc" />
+    </table>
+    <!-- End Location of cgatools crr files -->
+</tables>
+