Mercurial > repos > bcclaywell > microbiome_pplacer_suite

view decorate-wrapper.sh @ 7:b6ece07bec6a draft

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planemo upload commit 45906ba522c7c319067e93d5cd5d7161223c3336
author bcclaywell
date Mon, 12 Oct 2015 15:59:59 -0400
parents d4690e65afcd
children
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#!/bin/bash

source $(dirname $0)/util.sh
source $1

csvcut -c "specimen,${COLUMNS}" ${METADATA} | \
    csvjoin -c "specimen" ${GROUP_BY_SPECIMEN} - > ${DECORATED_GROUP_BY_SPECIMEN}

# drop duplicate columns (thanks, Erick!)
#csvcut -c $(head -n 1 addresses.csv | sed "s/,/\n/g" | sort |uniq | paste -s -d",")