Mercurial > repos > bcclaywell > microbiome_pplacer_suite
view decorate-wrapper.sh @ 6:3c50a937d7c1 draft
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author | bcclaywell |
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date | Wed, 15 Apr 2015 19:14:23 -0400 |
parents | d4690e65afcd |
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#!/bin/bash source $(dirname $0)/util.sh source $1 csvcut -c "specimen,${COLUMNS}" ${METADATA} | \ csvjoin -c "specimen" ${GROUP_BY_SPECIMEN} - > ${DECORATED_GROUP_BY_SPECIMEN} # drop duplicate columns (thanks, Erick!) #csvcut -c $(head -n 1 addresses.csv | sed "s/,/\n/g" | sort |uniq | paste -s -d",")