Mercurial > repos > bcclaywell > microbiome_pplacer_suite

diff decorate-wrapper.sh @ 0:d4690e65afcd draft

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author bcclaywell
date Thu, 26 Feb 2015 18:16:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/decorate-wrapper.sh	Thu Feb 26 18:16:36 2015 -0500
@@ -0,0 +1,10 @@
+#!/bin/bash
+
+source $(dirname $0)/util.sh
+source $1
+
+csvcut -c "specimen,${COLUMNS}" ${METADATA} | \
+    csvjoin -c "specimen" ${GROUP_BY_SPECIMEN} - > ${DECORATED_GROUP_BY_SPECIMEN}
+
+# drop duplicate columns (thanks, Erick!)
+#csvcut -c $(head -n 1 addresses.csv | sed "s/,/\n/g" | sort |uniq | paste -s -d",")