comparison usearch.xml @ 6:3c50a937d7c1 draft

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5:2d023c621bd0

<tool id="PHYLO_usearch" name="Analyze sequences" version="1.1.0">
  <description>with USEARCH</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <version_command>/home/matsengrp/local/bin/usearch6_64 --version</version_command>
  <command interpreter="bash">
    usearch-wrapper.sh $config
  </command>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <inputs>
    <param name="input_seqs" type="data" format="fasta" label="Input sequences"/>
    <param name="class_db" type="data" format="sqlite3" label="Placement database"/>
  </inputs>
  <outputs>

**What it does**

This tool queries large sequence databases for target sequences and assigns
those sequences to clusters.

-----

**Citation**

Edgar, R C: **Search and clustering orders of magnitude faster than
BLAST**. Bioinformatics 2010, **26**:19.

  </help>
</tool>

6:3c50a937d7c1

<tool id="PHYLO_usearch" name="Analyze sequences" version="1.1.0">
  <description>with USEARCH</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <version_command>/home/matsengrp/local/bin/usearch6_64 --version</version_command>
  <command interpreter="bash">
    usearch-wrapper.sh $config
  </command>
  <inputs>
    <param name="input_seqs" type="data" format="fasta" label="Input sequences"/>
    <param name="class_db" type="data" format="sqlite3" label="Placement database"/>
  </inputs>
  <outputs>

**What it does**

This tool queries large sequence databases for target sequences and assigns
those sequences to clusters.

  </help>
  <citations>
    <expand macro="cite_usearch"/>
  </citations>
</tool>