comparison preprocessing.xml @ 6:3c50a937d7c1 draft

Uploaded

5:2d023c621bd0

<tool id="PHYLO_preprocessing" name="Deduplicate sequences" version="3.0.0">
  <description>in preparation for alignment and placement</description>
  <requirements>
    <requirement type="package">yapp_env</requirement>
  </requirements>
  <macros>
    <import>macros.xml</import>
  </macros>
  <version_command>echo "guppy $(guppy --version)"</version_command>
  <command interpreter="bash">
    preprocessing-wrapper.sh ${config}
  </command>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <inputs>
    <param name="input_seqs" type="data" format="fasta" label="Input sequences"/>
    <param name="split_map" type="data" format="csv" label="Read-to-specimen map"/>
  </inputs>
  <outputs>

**What it does**

This tool deduplicates input sequences in preparation for alignment and placement.

  </help>
</tool>

6:3c50a937d7c1

<tool id="PHYLO_preprocessing" name="Deduplicate sequences" version="3.0.0">
  <description>in preparation for alignment and placement</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <requirements>
    <requirement type="package">yapp_env</requirement>
  </requirements>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <version_command>echo "pplacer $(pplacer --version)"</version_command>
  <command interpreter="bash">
    preprocessing-wrapper.sh ${config}
  </command>
  <inputs>
    <param name="input_seqs" type="data" format="fasta" label="Input sequences"/>
    <param name="split_map" type="data" format="csv" label="Read-to-specimen map"/>
  </inputs>
  <outputs>

**What it does**

This tool deduplicates input sequences in preparation for alignment and placement.

  </help>
  <citations>
    <expand macro="cite_pplacer"/>
  </citations>
</tool>