comparison filter.xml @ 6:3c50a937d7c1 draft

Uploaded

5:2d023c621bd0

<tool id="PHYLO_filter" name="Filter and trim" version="1.2.0">
  <description>sequences</description>
  <requirements>
    <requirement type="package">yapp_env</requirement>
  </requirements>
  <macros>
    <import>macros.xml</import>
  </macros>
  <version_command>seqmagick --version</version_command>
  <command interpreter="bash">
    filter-wrapper.sh ${config}
  </command>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <inputs>
    <!-- TODO: can take either fasta+qual or fastq -->
    <param name="plate_id" type="integer" value="1" label="Plate number"/>
    <param name="zone_id" type="integer" value="1" label="Zone number"/>
    <param name="raw_seqs" type="data" format="fasta" label="Unfiltered sequences"/>

parameters.

.. _quality filter documentation: http://fhcrc.github.io/seqmagick/quality_filter.html

  </help>
</tool>

6:3c50a937d7c1

<tool id="PHYLO_filter" name="Filter and trim" version="1.2.0">
  <description>sequences</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <requirements>
    <requirement type="package">yapp_env</requirement>
  </requirements>
  <stdio>
    <expand macro="basic_errors"/>
  </stdio>
  <version_command>seqmagick --version</version_command>
  <command interpreter="bash">
    filter-wrapper.sh ${config}
  </command>
  <inputs>
    <!-- TODO: can take either fasta+qual or fastq -->
    <param name="plate_id" type="integer" value="1" label="Plate number"/>
    <param name="zone_id" type="integer" value="1" label="Zone number"/>
    <param name="raw_seqs" type="data" format="fasta" label="Unfiltered sequences"/>

parameters.

.. _quality filter documentation: http://fhcrc.github.io/seqmagick/quality_filter.html

  </help>
  <citations>
    <expand macro="cite_seqmagick"/>
    <expand macro="cite_biopython"/>
  </citations>
</tool>