Mercurial > repos > bcclaywell > compressed_datatypes
changeset 0:83f10f4a6d1f draft default tip
planemo upload commit 07fd35ecbdfd1be585d7f01806f9987b12ce916d
| author | bcclaywell |
|---|---|
| date | Wed, 27 May 2015 20:24:21 -0400 |
| parents | |
| children | |
| files | datatypes_conf.xml fastagz_to_fasta.xml fastqgz_to_fastq.xml |
| diffstat | 3 files changed, 35 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.xml Wed May 27 20:24:21 2015 -0400 @@ -0,0 +1,11 @@ +<?xml version="1.0"?> +<datatypes> + <registration> + <datatype extension="fasta.gz" type="galaxy.datatypes.binary:CompressedArchive" subclass="True" display_in_upload="True"> + <converter file="fastagz_to_fasta.xml" target_datatype="fasta"/> + </datatype> + <datatype extension="fastq.gz" type="galaxy.datatypes.binary:CompressedArchive" subclass="True" display_in_upload="True"> + <converter file="fastqgz_to_fastq.xml" target_datatype="fastq"/> + </datatype> + </registration> +</datatypes>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastagz_to_fasta.xml Wed May 27 20:24:21 2015 -0400 @@ -0,0 +1,12 @@ +<tool id="CONVERTER_fastagz_to_fasta_0" name="Convert fasta.gz to fasta" version="1.0.0"> + <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> --> + <command>gunzip -c $input > $output</command> + <inputs> + <param name="input" type="data" format="fasta.gz" label="fasta.gz file"/> + </inputs> + <outputs> + <data name="output" format="fasta"/> + </outputs> + <help> + </help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fastqgz_to_fastq.xml Wed May 27 20:24:21 2015 -0400 @@ -0,0 +1,12 @@ +<tool id="CONVERTER_fastqgz_to_fastq_0" name="Convert fastq.gz to fastq" version="1.0.0"> + <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> --> + <command>gunzip -c $input > $output</command> + <inputs> + <param name="input" type="data" format="fastq.gz" label="fastq.gz file"/> + </inputs> + <outputs> + <data name="output" format="fastq"/> + </outputs> + <help> + </help> +</tool>