diff venv/lib/python2.7/site-packages/planemo/commands/cmd_test.py @ 0:d67268158946 draft

planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/venv/lib/python2.7/site-packages/planemo/commands/cmd_test.py	Mon Oct 12 17:43:33 2015 -0400
@@ -0,0 +1,61 @@
+import sys
+
+import click
+
+from planemo.cli import pass_context
+from planemo import options
+from planemo import galaxy_config
+
+from planemo.galaxy_test import (
+    run_in_config,
+)
+
+
[e-mail]('test')
[e-mail]_tools_arg(multiple=True)
[e-mail](
+    "--failed",
+    is_flag=True,
+    help="Re-run only failed tests. This command will read "
+         "tool_test_output.json to determine which tests failed so this "
+         "file must have been produced with the same set of tool ids "
+         "previously.",
+    default=False,
+)
[e-mail]_target_options()
[e-mail]_config_options()
[e-mail]_options()
+@pass_context
+def cli(ctx, paths, **kwds):
+    """Run the tests in the specified tool tests in a Galaxy instance.
+
+    All referenced tools (by default all the tools in the current working
+    directory) will be tested and the results quickly summarized.
+
+    To run these tests planemo needs a Galaxy instance to utilize, planemo
+    will search parent directories to see if any is a Galaxy instance
+    - but one can pick the Galaxy instance to use with the --galaxy_root
+    option or force planemo to download a disposable instance with the
+    ``--install_galaxy`` flag.
+
+    In additon to to quick summary printed to the console - various detailed
+    output summaries can be configured. ``tool_test_output.html`` (settable
+    via ``--test_output``) will contain a human consumable HTML report
+    describing the test run. A JSON file (settable via ``--test_output_json``
+    and defaulting to ``tool_test_output.json``) will also be created. These
+    files can can be disabled by passing in empty arguments or globally by
+    setting the values ``default_test_output`` and/or
+    ``default_test_output_json`` in ``~/.planemo.yml`` to ``null``. For
+    continuous integration testing a xUnit-style report can be confiured using
+    the ``--test_output_xunit``.
+
+    planemo uses temporarily generated config files and environment variables
+    to attempt to shield this execution of Galaxy from manually launched runs
+    against that same Galaxy root - but this may not be bullet proof yet so
+    please careful and do not try this against production Galaxy instances.
+    """
+    kwds["for_tests"] = True
+    with galaxy_config.galaxy_config(ctx, paths, **kwds) as config:
+        return_value = run_in_config(ctx, config, **kwds)
+        if return_value:
+            sys.exit(return_value)