Mercurial > repos > bcclaywell > argo_navis
annotate bin/txt2svg @ 2:7eaf6f9abd28 draft default tip
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b-dirty
| author | bcclaywell |
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| date | Mon, 12 Oct 2015 17:57:38 -0400 |
| parents | d67268158946 |
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| rev | line source |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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1 #!/usr/bin/env Rscript |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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2 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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3 library(argparse) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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4 library(ggplot2) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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5 |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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6 default.font.size <- 5 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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7 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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8 parser <- ArgumentParser() |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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9 parser$add_argument('input') |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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10 parser$add_argument('-s', '--font-size', type="double", default=default.font.size) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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11 parser$add_argument('output') |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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12 args <- parser$parse_args() |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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13 |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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14 |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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15 if (args$input == '-') { |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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16 text.lines <- scan("stdin", what=character(), blank.lines.skip=T, sep="\n") |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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17 } else { |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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18 text <- readChar(args$input, file.info(args$input)$size) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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19 text.lines <- strsplit(text, "\\n")[[1]] |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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20 } |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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21 |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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22 data <- data.frame(text=text.lines, x=0, y=length(text.lines):1) |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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23 data$length <- nchar(text.lines) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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24 |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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25 gg <- ggplot(data, aes(x, y, label=text)) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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26 gg <- gg + geom_text(family="mono", hjust=0, size=args$font_size) |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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27 gg <- gg + xlim(c(0, 1)) |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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28 gg <- gg + ylim(c(0.5, length(text.lines)+0.5)) |
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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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29 #eliminates background, gridlines, and chart border |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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30 gg <- gg + theme_bw() + |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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31 theme(plot.background = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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32 panel.grid.major = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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33 panel.grid.minor = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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34 panel.border = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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35 axis.line = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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36 axis.title = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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37 axis.text = element_blank(), |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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38 axis.ticks = element_blank()) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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39 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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40 font.scale <- args$font_size / default.font.size |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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41 width <- font.scale * max(data$length) * 0.13 + 0.5 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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42 height <- font.scale * length(text.lines) * 0.18 + 0.6 |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
parents:
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43 ggsave(args$output, gg, width=width, height=height) |
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d67268158946
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
bcclaywell
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44 |
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45 |
