Mercurial > repos > badger > trinityrnaseq

diff trinityrnaseq.xml @ 3:a9d882069cd4 draft

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Fix grep for determining successful run.
author Jim Johnson <jj@umn.edu>
date Fri, 08 Nov 2013 16:11:37 -0600
parents 5eb99d21ef0d
children d5580071d910
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--- a/trinityrnaseq.xml	Thu Sep 05 08:08:21 2013 -0500
+++ b/trinityrnaseq.xml	Fri Nov 08 16:11:37 2013 -0600
@@ -43,7 +43,7 @@
 	
                 
         ## direct to output
-        | tee $trinity_log | grep 'Error'
+        | tee $trinity_log | grep -q 'All commands completed successfully.'
  
     </command>
     <inputs>