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2
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1 <tool id="submit_to_mgrast" name="submit_to_mgrast" version="1.2.1">
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2 <description>This script submits a FASTA file to MG-RAST</description>
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3 <requirements>
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4 <requirement type="binary">submit_to_mgrast.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 submit_to_mgrast.py
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10 --input_fasta_fp=$input_fasta_fp
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11 --web_key_auth=$web_key_auth
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12 --project_id=$project_id
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13 --output_dir=$__new_file_path__
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14 </command>
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15 <inputs>
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16 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
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17 help="path to the input fasta file [REQUIRED]"/>
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18 <param name="web_key_auth" type="text" label="web_key_auth"
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19 help="the web services authorization key from MG-RAST [REQUIRED]"/>
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20 <param name="project_id" type="text" label="project_id"
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21 help="the title to be used for the project [REQUIRED]"/>
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22 </inputs>
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23 <outputs>
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24
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25 </outputs>
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26 <tests>
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27 </tests>
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28 <help>
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29
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30 </help>
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31 </tool>
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32
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