comparison xpore_diffmod.xml @ 2:bd8204188d84 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/xpore commit 59e86ba957774b2fb86b3f5dbd7be24f99dd60f7

1:3560b687b06b

<tool id="xpore_diffmod" name="xpore-diffmod" version="0.5.6+galaxy2">
  <description></description>
  <requirements>
        <requirement type="package" version="0.5.6">xpore</requirement>
  </requirements>
  <stdio>
      <exit_code range="1:" level="fatal" description="Tool exception" />
  </stdio>
  <command detect_errors="exit_code"><![CDATA[

    printf "\nout: ./out\n" >> config.yml &&
    printf "\nmethod:\n" >> config.yml &&
    printf "    prefiltering:\n" >> config.yml &&
    printf "        method: t-test\n" >> config.yml &&
    printf "        threshold: 0.1\n" >> config.yml &&
    xpore-diffmod --config config.yml  --n_processes \${GALAXY_SLOTS:-4} &&
    sed -i "s/,/\t/g" ./out/diffmod.table &&
    mv ./out/diffmod.table $diffmod_table &&
    mv ./out/diffmod.log $diffmod_log &&
    mv ./config.yml $config

2:bd8204188d84

<tool id="xpore_diffmod" name="xpore-diffmod" version="2.1+galaxy0">
  <description></description>
  <requirements>
        <requirement type="package" version="2.1">xpore</requirement>
  </requirements>
  <stdio>
      <exit_code range="1:" level="fatal" description="Tool exception" />
  </stdio>
  <command detect_errors="exit_code"><![CDATA[

    printf "\nout: ./out\n" >> config.yml &&
    printf "\nmethod:\n" >> config.yml &&
    printf "    prefiltering:\n" >> config.yml &&
    printf "        method: t-test\n" >> config.yml &&
    printf "        threshold: 0.1\n" >> config.yml &&
    xpore diffmod --config config.yml  --n_processes \${GALAXY_SLOTS:-4} &&
    sed -i "s/,/\t/g" ./out/diffmod.table &&
    mv ./out/diffmod.table $diffmod_table &&
    mv ./out/diffmod.log $diffmod_log &&
    mv ./config.yml $config