Mercurial > repos > artbio > sr_bowtie_dataset_annotation
comparison sr_bowtie_dataset_annotation.xml @ 1:19ba2e38e8ec draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie_dataset_annotation commit 1010eff91c8ce7415d50adaf2f83ecc278295df8"
| author | artbio |
|---|---|
| date | Sun, 24 Oct 2021 23:51:38 +0000 |
| parents | bfe92ceffe57 |
| children | e6cba7203dbd |
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| 0:bfe92ceffe57 | 1:19ba2e38e8ec |
|---|---|
| 1 <tool id="sr_bowtie_dataset_annotation" name="Annotate smRNA dataset" version="2.4.0"> | 1 <tool id="sr_bowtie_dataset_annotation" name="Annotate smRNA dataset" version="2.5.0"> |
| 2 <description>by iterative alignments with sRbowtie</description> | 2 <description>by iterative alignments with sRbowtie</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1.2">bowtie</requirement> | 4 <requirement type="package" version="1.3.1">bowtie</requirement> |
| 5 <requirement type="package" version="1.6.0">r-optparse</requirement> | 5 <requirement type="package" version="1.7.1">r-optparse</requirement> |
| 6 <requirement type="package" version="3.1.0">r-ggplot2</requirement> | 6 <requirement type="package" version="3.3.5">r-ggplot2</requirement> |
| 7 <requirement type="package" version="0.8.0">r-ggrepel</requirement> | 7 <requirement type="package" version="0.9.1">r-ggrepel</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 10 #if $refGenomeSource1.genomeSource == "history": | 10 #if $refGenomeSource1.genomeSource == "history": |
| 11 bowtie-build -f $refGenomeSource1.ownFile genome 1>/dev/null && | 11 bowtie-build -f $refGenomeSource1.ownFile genome 1>/dev/null && |
| 12 #set index_path = 'genome' | 12 #set index_path = 'genome' |