Mercurial > repos > artbio > snvtocnv

diff segmentation_sequenza.R @ 4:e299c477b475 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv commit 10edea05400e21ba43942bd0cc582153d60ae2d9"
author artbio
date Sat, 20 Feb 2021 09:10:06 +0000
parents 9265faa93098
children 88e03bac1e36
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--- a/segmentation_sequenza.R	Fri Feb 19 15:22:05 2021 +0000
+++ b/segmentation_sequenza.R	Sat Feb 20 09:10:06 2021 +0000
@@ -42,7 +42,7 @@
 ## Processing seqz files : normalisation and segmentation for chromosomes 1 to 22
 message(sprintf("\nExtraction step for %s", data_file))
 
-chrom_list = c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9",
+chrom_list <- c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9",
                "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17",
                "chr18", "chr19", "chr20", "chr21", "chr22")