Mercurial > repos > artbio > snvtocnv
diff sequenza_to_hrdtools_input.R @ 8:67213c4eefa6 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/snvtocnv commit 10ad3a0ca7cd23ad1e0940844147e1d1b3d069f0"
| author | artbio |
|---|---|
| date | Sun, 07 Mar 2021 23:13:08 +0000 |
| parents | e66b91475343 |
| children |
line wrap: on
line diff
--- a/sequenza_to_hrdtools_input.R Sun Mar 07 14:21:06 2021 +0000 +++ b/sequenza_to_hrdtools_input.R Sun Mar 07 23:13:08 2021 +0000 @@ -1,4 +1,5 @@ -options(warn = -1) +options(show.error.messages = F, error = function() { + cat(geterrmessage(), file = stderr()); q("no", 1, F) }) # load packages that are provided in the conda env @@ -61,6 +62,6 @@ print(reformatted) reformatted %>% - write.table(opt$output, quote=F, row.names=F, sep="\t") + write.table(opt$output, quote = F, row.names = F, sep = "\t") message(sprintf("Output written to %s", opt$output))