Mercurial > repos > artbio > small_rna_signatures

diff overlapping_reads.py @ 1:ca2b04cdbf4d draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 8691f2575cacd71c971338658198a1324e5f9370"
author artbio
date Sat, 23 Oct 2021 22:54:47 +0000
parents 3e0ea204d09e
children c0e72bd28453
line wrap: on
line diff
--- a/overlapping_reads.py	Tue Jan 07 11:59:34 2020 +0000
+++ b/overlapping_reads.py	Sat Oct 23 22:54:47 2021 +0000
@@ -74,7 +74,7 @@
 
     def query_positions(self, bam_object, overlap):
         all_query_positions = defaultdict(list)
-        for genomicKey in self.alignement_dic.keys():
+        for genomicKey in list(self.alignement_dic):
             chrom, coord, pol = genomicKey
             if pol == 'F' and len(self.alignement_dic[(chrom,
                                                       coord+overlap-1,