Mercurial > repos > artbio > small_rna_maps

diff small_rna_maps.py @ 2:59d93aa7cc20 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit d280e9be7cf96f4938a73ccf5985533109f3328f"
author artbio
date Sat, 05 Oct 2019 18:24:52 -0400
parents 615fa2171a34
children 5f77e7dec4ea
line wrap: on
line diff
--- a/small_rna_maps.py	Fri Oct 04 04:33:08 2019 -0400
+++ b/small_rna_maps.py	Sat Oct 05 18:24:52 2019 -0400
@@ -242,6 +242,8 @@
                     if not map_dictionary[(chrom, pos+1, 'F')]:
                         map_dictionary[(chrom, pos+1, 'F')] = []
         for key in map_dictionary:
+            if 'R' in key:
+                continue
             coverage = self.bam_object.count_coverage(
                                                 contig=key[0],
                                                 start=key[1]-1,