# HG changeset patch
# User artbio
# Date 1500795820 14400
# Node ID f924a33e1eef62b55e526418668061c07fb90bd5
# Parent  d65045e976e634d0c5a344384ea3de92a7642d73
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_map commit 19a447cd21c746c852cf7434b5df423504baf383

diff -r d65045e976e6 -r f924a33e1eef small_rna_map.py
--- a/small_rna_map.py	Sat Jul 22 11:45:52 2017 -0400
+++ b/small_rna_map.py	Sun Jul 23 03:43:40 2017 -0400
@@ -121,13 +121,15 @@
         Takes a map_dictionary and returns a dictionary of sizes:
         {chrom: {size: {polarity: nbre of reads}}}
         '''
-        size_dictionary = defaultdict(lambda: defaultdict(lambda: defaultdict( int )))
+        size_dictionary = defaultdict(lambda: defaultdict(
+                                      lambda: defaultdict( int )))
         for key in map_dictionary:
+            if len(map_dictionary) == 0:
+                #  to track empty chromosomes
+                size_dictionary[key[0]][key[2]][size] = 0
+                continue
             for size in map_dictionary[key]:
-                try:
-                    size_dictionary[key[0]][key[2]][size] += 1
-                except KeyError:
-                    size_dictionary[key[0]][key[2]][size] = 1
+                size_dictionary[key[0]][key[2]][size] += 1
         return size_dictionary
 
     def write_size_table(self, out):
diff -r d65045e976e6 -r f924a33e1eef small_rna_map.xml
--- a/small_rna_map.xml	Sat Jul 22 11:45:52 2017 -0400
+++ b/small_rna_map.xml	Sun Jul 23 03:43:40 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="small_rna_map" name="small rna map" version="0.5.0">
+<tool id="small_rna_map" name="small rna map" version="0.6.0">
   <description></description>
   <requirements>
         <requirement type="package" version="1.11.2=py27_0">numpy</requirement>