Mercurial > repos > artbio > ngsplot
comparison ngsplot.xml @ 4:9652d08d8441 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/ngsplot commit 73a8ef46dddb0a1b224720bcdfe46050ee9a1b8b
| author | artbio |
|---|---|
| date | Tue, 26 Dec 2017 08:07:56 -0500 |
| parents | de27d4172d19 |
| children |
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| 3:de27d4172d19 | 4:9652d08d8441 |
|---|---|
| 1 <tool id="ngsplot" name="ngsplot" version="0.3.0"> | 1 <tool id="ngsplot" name="ngsplot" version="0.3.1"> |
| 2 <description>visualize NGS samples at functional genomic regions - beta</description> | 2 <description>visualize NGS samples at functional genomic regions - beta</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.17.1=r3.3.2_1">r-catools</requirement> | 4 <requirement type="package" version="1.17.1=r3.3.2_1">r-catools</requirement> |
| 5 <requirement type="package" version="1.3.4">r-domc</requirement> | 5 <requirement type="package" version="1.3.4">r-domc</requirement> |
| 6 <requirement type="package" version="1.42.0">bioconductor-bsgenome</requirement> | 6 <requirement type="package" version="1.42.0">bioconductor-bsgenome</requirement> |
| 55 <--> | 55 <--> |
| 56 | 56 |
| 57 <inputs> | 57 <inputs> |
| 58 <param type="select" name="genome_name" label="Genome" help="Select Genome (only hg38 supported in this draft)"> | 58 <param type="select" name="genome_name" label="Genome" help="Select Genome (only hg38 supported in this draft)"> |
| 59 <option value="hg38">hg38</option> | 59 <option value="hg38">hg38</option> |
| 60 <option value="mm9">mm9</option> | |
| 60 </param> | 61 </param> |
| 61 <conditional name="genomic_region_source_type"> | 62 <conditional name="genomic_region_source_type"> |
| 62 <param type="select" name="genomic_region" label="Genomic region" help=""> | 63 <param type="select" name="genomic_region" label="Genomic region" help=""> |
| 63 <option value="tss">TSS</option> | 64 <option value="tss">TSS</option> |
| 64 <option value="tes">TES</option> | 65 <option value="tes">TES</option> |