Mercurial > repos > artbio > mutational_patterns
changeset 0:d585f369bfad draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 518fb067e8206ecafbf673a5e4cf375ccead11e3"
| author | artbio |
|---|---|
| date | Fri, 04 Jun 2021 22:35:17 +0000 |
| parents | |
| children | c73aa7cc4c4b |
| files | mutational_patterns.R mutational_patterns.xml sigProfiler_SBS_signatures_2019_05_22.tsv test-data/F.vcf test-data/FGHI_levels.tab test-data/G.vcf test-data/GH_levels.tab test-data/H.vcf test-data/I.vcf test-data/cosmic_output1.pdf test-data/cosmic_output2.pdf test-data/denovo_1.RData test-data/denovo_output1.pdf test-data/sig_contrib_table.tsv test-data/sigmatrix.tab test-data/spectrum_output1.pdf |
| diffstat | 16 files changed, 21605 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mutational_patterns.R Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,422 @@ +# load packages that are provided in the conda env +options(show.error.messages = F, + error = function() { + cat(geterrmessage(), file = stderr()); q("no", 1, F) + } + ) +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") +warnings() +library(optparse) +library(rjson) +library(grid) +library(gridExtra) +library(scales) +library(RColorBrewer) + +# Arguments +option_list <- list( + make_option( + "--inputs", + default = NA, + type = "character", + help = "json formatted dictionary of datasets and their paths" + ), + make_option( + "--genome", + default = NA, + type = "character", + help = "genome name in the BSgenome bioconductor package" + ), + make_option( + "--levels", + default = NA, + type = "character", + help = "path to the tab separated file describing the levels in function of datasets" + ), + make_option( + "--cosmic_version", + default = "v2", + type = "character", + help = "Version of the Cosmic Signature set to be used to express mutational patterns" + ), + make_option( + "--signum", + default = 2, + type = "integer", + help = "selects the N most significant signatures in samples to express mutational patterns" + ), + make_option( + "--nrun", + default = 2, + type = "integer", + help = "Number of runs to fit signatures" + ), + make_option( + "--rank", + default = 2, + type = "integer", + help = "number of ranks to display for parameter optimization" + ), + make_option( + "--newsignum", + default = 2, + type = "integer", + help = "Number of new signatures to be captured" + ), + make_option( + "--output_spectrum", + default = NA, + type = "character", + help = "path to output dataset" + ), + make_option( + "--output_denovo", + default = NA, + type = "character", + help = "path to output dataset" + ), + make_option( + "--sigmatrix", + default = NA, + type = "character", + help = "path to signature matrix" + ), + make_option( + "--output_cosmic", + default = NA, + type = "character", + help = "path to output dataset" + ), + make_option( + "--sig_contrib_matrix", + default = NA, + type = "character", + help = "path to signature contribution matrix" + ), + make_option( + c("-r", "--rdata"), + type = "character", + default = NULL, + help = "Path to RData output file") +) + +opt <- parse_args(OptionParser(option_list = option_list), + args = commandArgs(trailingOnly = TRUE)) + +################ Manage input data #################### +json_dict <- opt$inputs +parser <- newJSONParser() +parser$addData(json_dict) +fileslist <- parser$getObject() +vcf_paths <- attr(fileslist, "names") +element_identifiers <- unname(unlist(fileslist)) +ref_genome <- opt$genome +vcf_table <- data.frame(element_identifier = as.character(element_identifiers), path = vcf_paths) + +library(MutationalPatterns) +library(ref_genome, character.only = TRUE) +library(ggplot2) + +# Load the VCF files into a GRangesList: +vcfs <- read_vcfs_as_granges(vcf_paths, element_identifiers, ref_genome) +library(plyr) +if (!is.na(opt$levels)[1]) { # manage levels if there are + levels_table <- read.delim(opt$levels, header = FALSE, + col.names = c("element_identifier", "level")) + } else { + levels_table <- data.frame(element_identifier = vcf_table$element_identifier, + level = rep("nolabels", length(vcf_table$element_identifier))) +} +metadata_table <- join(vcf_table, levels_table, by = "element_identifier") +tissue <- as.vector(metadata_table$level) +detach(package:plyr) + +##### This is done for any section ###### +mut_mat <- mut_matrix(vcf_list = vcfs, ref_genome = ref_genome) +qual_col_pals <- brewer.pal.info[brewer.pal.info$category == "qual", ] +col_vector <- unique(unlist(mapply(brewer.pal, qual_col_pals$maxcolors, rownames(qual_col_pals)))) +col_vector <- col_vector[c(-32, -34, -39)] # 67-color palette + +###### Section 1 Mutation characteristics and spectrums ############# +if (!is.na(opt$output_spectrum)[1]) { + pdf(opt$output_spectrum, paper = "special", width = 11.69, height = 11.69) + type_occurrences <- mut_type_occurrences(vcfs, ref_genome) + + # mutation spectrum, total or by sample + + if (length(levels(factor(levels_table$level))) == 1) { + p1 <- plot_spectrum(type_occurrences, CT = TRUE, legend = TRUE) + plot(p1) + } else { + p2 <- plot_spectrum(type_occurrences, by = tissue, CT = TRUE) # by levels + p3 <- plot_spectrum(type_occurrences, CT = TRUE, legend = TRUE) # total + grid.arrange(p2, p3, ncol = 2, widths = c(4, 2.3), heights = c(4, 1)) + } + plot_96_profile(mut_mat, condensed = TRUE) + dev.off() +} + +###### Section 2: De novo mutational signature extraction using NMF ####### +# opt$rank cannot be higher than the number of samples and +# likewise, opt$signum cannot be higher thant the number of samples +if (!is.na(opt$output_denovo)[1]) { + + if (opt$rank > length(element_identifiers)) { + opt$rank <- length(element_identifiers) + } + if (opt$signum > length(element_identifiers)) { + opt$signum <- length(element_identifiers) + } + pseudo_mut_mat <- mut_mat + 0.0001 # First add a small pseudocount to the mutation count matrix + # Use the NMF package to generate an estimate rank plot + library("NMF") + estimate <- nmf(pseudo_mut_mat, rank = 1:opt$rank, method = "brunet", nrun = opt$nrun, seed = 123456) + # And plot it + pdf(opt$output_denovo, paper = "special", width = 11.69, height = 11.69) + p4 <- plot(estimate) + grid.arrange(p4) + # Extract 4 (PARAMETIZE) mutational signatures from the mutation count matrix with extract_signatures + # (For larger datasets it is wise to perform more iterations by changing the nrun parameter + # to achieve stability and avoid local minima) + nmf_res <- extract_signatures(pseudo_mut_mat, rank = opt$newsignum, nrun = opt$nrun) + # Assign signature names + colnames(nmf_res$signatures) <- paste0("NewSig_", 1:opt$newsignum) + rownames(nmf_res$contribution) <- paste0("NewSig_", 1:opt$newsignum) + # Plot the 96-profile of the signatures: + p5 <- plot_96_profile(nmf_res$signatures, condensed = TRUE) + new_sig_matrix <- reshape2::dcast(p5$data, substitution + context ~ variable, value.var = "value") + new_sig_matrix <- format(new_sig_matrix, scientific = TRUE) + write.table(new_sig_matrix, file = opt$sigmatrix, quote = FALSE, row.names = FALSE, sep = "\t") + grid.arrange(p5) + # Visualize the contribution of the signatures in a barplot + pc1 <- plot_contribution(nmf_res$contribution, nmf_res$signature, mode = "relative", coord_flip = TRUE) + # Visualize the contribution of the signatures in absolute number of mutations + pc2 <- plot_contribution(nmf_res$contribution, nmf_res$signature, mode = "absolute", coord_flip = TRUE) + # Combine the two plots: + grid.arrange(pc1, pc2) + + # The relative contribution of each signature for each sample can also be plotted as a heatmap with + # plot_contribution_heatmap, which might be easier to interpret and compare than stacked barplots. + # The samples can be hierarchically clustered based on their euclidean dis- tance. The signatures + # can be plotted in a user-specified order. + # Plot signature contribution as a heatmap with sample clustering dendrogram and a specified signature order: + pch1 <- plot_contribution_heatmap(nmf_res$contribution, + sig_order = paste0("NewSig_", 1:opt$newsignum)) + # Plot signature contribution as a heatmap without sample clustering: + pch2 <- plot_contribution_heatmap(nmf_res$contribution, cluster_samples = FALSE) + #Combine the plots into one figure: + grid.arrange(pch1, pch2, ncol = 2, widths = c(2, 1.6)) + + # Compare the reconstructed mutational profile with the original mutational profile: + plot_compare_profiles(pseudo_mut_mat[, 1], + nmf_res$reconstructed[, 1], + profile_names = c("Original", "Reconstructed"), + condensed = TRUE) + dev.off() + } +##### Section 3: Find optimal contribution of known signatures: COSMIC mutational signatures #### + +if (!is.na(opt$output_cosmic)[1]) { + pdf(opt$output_cosmic, paper = "special", width = 11.69, height = 11.69) + pseudo_mut_mat <- mut_mat + 0.0001 # First add a small psuedocount to the mutation count matrix + if (opt$cosmic_version == "v2") { + sp_url <- paste("https://cancer.sanger.ac.uk/cancergenome/assets/", "signatures_probabilities.txt", sep = "") + cancer_signatures <- read.table(sp_url, sep = "\t", header = TRUE) + new_order <- match(row.names(pseudo_mut_mat), cancer_signatures$Somatic.Mutation.Type) + cancer_signatures <- cancer_signatures[as.vector(new_order), ] + row.names(cancer_signatures) <- cancer_signatures$Somatic.Mutation.Type + cancer_signatures <- as.matrix(cancer_signatures[, 4:33]) + colnames(cancer_signatures) <- gsub("Signature.", "", colnames(cancer_signatures)) # shorten signature labels + cosmic_tag <- "Signatures (Cosmic v2, March 2015)" + cosmic_colors <- col_vector[1:30] + } else { + sp_url <- "https://raw.githubusercontent.com/ARTbio/startbio/master/sigProfiler_SBS_signatures_2019_05_22.tsv" + cancer_signatures <- read.table(sp_url, sep = "\t", header = TRUE) + new_order <- match(row.names(pseudo_mut_mat), cancer_signatures$Somatic.Mutation.Type) + cancer_signatures <- cancer_signatures[as.vector(new_order), ] + row.names(cancer_signatures) <- cancer_signatures$Somatic.Mutation.Type + cancer_signatures <- as.matrix(cancer_signatures[, 4:70]) + colnames(cancer_signatures) <- gsub("SBS", "", colnames(cancer_signatures)) # shorten signature labels + cosmic_tag <- "Signatures (Cosmic v3, May 2019)" + cosmic_colors <- col_vector[1:67] + } + + # Plot mutational profiles of the COSMIC signatures + if (opt$cosmic_version == "v2") { + p6 <- plot_96_profile(cancer_signatures, condensed = TRUE, ymax = 0.3) + grid.arrange(p6, top = textGrob("COSMIC signature profiles", gp = gpar(fontsize = 12, font = 3))) + } else { + p6 <- plot_96_profile(cancer_signatures[, 1:33], condensed = TRUE, ymax = 0.3) + p6bis <- plot_96_profile(cancer_signatures[, 34:67], condensed = TRUE, ymax = 0.3) + grid.arrange(p6, top = textGrob("COSMIC signature profiles (on two pages)", + gp = gpar(fontsize = 12, font = 3))) + grid.arrange(p6bis, top = textGrob("COSMIC signature profiles (continued)", + gp = gpar(fontsize = 12, font = 3))) + } + + + # Find optimal contribution of COSMIC signatures to reconstruct 96 mutational profiles + fit_res <- fit_to_signatures(pseudo_mut_mat, cancer_signatures) + + # Plot contribution barplots + pc3 <- plot_contribution(fit_res$contribution, cancer_signatures, coord_flip = T, mode = "absolute") + pc4 <- plot_contribution(fit_res$contribution, cancer_signatures, coord_flip = T, mode = "relative") + pc3_data <- pc3$data + pc3 <- ggplot(pc3_data, aes(x = Sample, y = Contribution, fill = as.factor(Signature))) + + geom_bar(stat = "identity", position = "stack") + + coord_flip() + + scale_fill_manual(name = "Cosmic\nSignatures", values = cosmic_colors) + + labs(x = "Samples", y = "Absolute contribution") + theme_bw() + + theme(panel.grid.minor.x = element_blank(), + panel.grid.major.x = element_blank(), + legend.position = "right", + text = element_text(size = 8), + axis.text.x = element_text(angle = 90, hjust = 1)) + pc4_data <- pc4$data + pc4 <- ggplot(pc4_data, aes(x = Sample, y = Contribution, fill = as.factor(Signature))) + + geom_bar(stat = "identity", position = "fill") + + coord_flip() + + scale_fill_manual(name = "Cosmic\nSignatures", values = cosmic_colors) + + scale_y_continuous(labels = scales::percent_format(accuracy = 1)) + + labs(x = "Samples", y = "Relative contribution") + theme_bw() + + theme(panel.grid.minor.x = element_blank(), panel.grid.major.x = element_blank(), legend.position = "right", + text = element_text(size = 8), + axis.text.x = element_text(angle = 90, hjust = 1)) + ##### + # ggplot2 alternative + if (!is.na(opt$levels)[1]) { # if there are levels to display in graphs + pc3_data <- pc3$data + pc3_data <- merge(pc3_data, metadata_table[, c(1, 3)], by.x = "Sample", by.y = "element_identifier") + pc3 <- ggplot(pc3_data, aes(x = Sample, y = Contribution, fill = as.factor(Signature))) + + geom_bar(stat = "identity", position = "stack") + + scale_fill_manual(name = "Cosmic\nSignatures", values = cosmic_colors) + + labs(x = "Samples", y = "Absolute contribution") + theme_bw() + + theme(panel.grid.minor.x = element_blank(), + panel.grid.major.x = element_blank(), + legend.position = "right", + text = element_text(size = 8), + axis.text.x = element_text(angle = 90, hjust = 1)) + + facet_grid(~level, scales = "free_x", space = "free") + pc4_data <- pc4$data + pc4_data <- merge(pc4_data, metadata_table[, c(1, 3)], by.x = "Sample", by.y = "element_identifier") + pc4 <- ggplot(pc4_data, aes(x = Sample, y = Contribution, fill = as.factor(Signature))) + + geom_bar(stat = "identity", position = "fill") + + scale_fill_manual(name = "Cosmic\nSignatures", values = cosmic_colors) + + scale_y_continuous(labels = scales::percent_format(accuracy = 1)) + + labs(x = "Samples", y = "Relative contribution") + theme_bw() + + theme(panel.grid.minor.x = element_blank(), + panel.grid.major.x = element_blank(), + legend.position = "right", + text = element_text(size = 8), + axis.text.x = element_text(angle = 90, hjust = 1)) + + facet_grid(~level, scales = "free_x", space = "free") + } + # Combine the two plots: + grid.arrange(pc3, pc4, + top = textGrob("Absolute and Relative Contributions of Cosmic signatures to mutational patterns", + gp = gpar(fontsize = 12, font = 3))) + + #### pie charts of comic signatures contributions in samples ### + library(reshape2) + library(dplyr) + if (length(levels(factor(levels_table$level))) < 2) { + fit_res_contrib <- as.data.frame(fit_res$contribution) + worklist <- cbind(signature = rownames(fit_res$contribution), + level = rep("nolabels", length(fit_res_contrib[, 1])), + fit_res_contrib, + sum = rowSums(fit_res_contrib)) + worklist <- worklist[order(worklist[, "sum"], decreasing = T), ] + worklist <- worklist[1:opt$signum, ] + worklist <- worklist[, -length(worklist[1, ])] + worklist <- melt(worklist) + worklist <- worklist[, c(1, 3, 4, 2)] + } else { + worklist <- list() + for (i in levels(factor(levels_table$level))) { + fit_res$contribution[, levels_table$element_identifier[levels_table$level == i]] -> worklist[[i]] + sum <- rowSums(as.data.frame(worklist[[i]])) + worklist[[i]] <- cbind(worklist[[i]], sum) + worklist[[i]] <- worklist[[i]][order(worklist[[i]][, "sum"], decreasing = T), ] + worklist[[i]] <- worklist[[i]][1:opt$signum, ] + worklist[[i]] <- worklist[[i]][, -length(as.data.frame(worklist[[i]]))] + } + worklist <- as.data.frame(melt(worklist)) + worklist[, 2] <- paste0(worklist[, 4], " - ", worklist[, 2]) + head(worklist) + } + + colnames(worklist) <- c("signature", "sample", "value", "level") + worklist <- as.data.frame(worklist %>% group_by(sample) %>% mutate(value = value / sum(value) * 100)) + worklist$pos <- cumsum(worklist$value) - worklist$value / 2 + worklist$label <- factor(worklist$signature) + worklist$signature <- factor(worklist$signature) + p7 <- ggplot(worklist, aes(x = "", y = value, group = signature, fill = signature)) + + geom_bar(width = 1, stat = "identity") + + geom_text(aes(label = label), position = position_stack(vjust = 0.5), color = "black", size = 3) + + coord_polar("y", start = 0) + facet_wrap(.~sample) + + labs(x = "", y = "Samples", fill = cosmic_tag) + + scale_fill_manual(name = paste0(opt$signum, " most contributing\nsignatures\n(in each label/tissue)"), + values = cosmic_colors[as.numeric(levels(factor(worklist$label)))]) + + theme(axis.text = element_blank(), + axis.ticks = element_blank(), + panel.grid = element_blank()) + grid.arrange(p7) + + # Plot relative contribution of the cancer signatures in each sample as a heatmap with sample clustering + if (length(vcf_paths) > 1) { + p8 <- plot_contribution_heatmap(fit_res$contribution, cluster_samples = TRUE, method = "complete") + grid.arrange(p8) + } + + # export relative contribution matrix + if (!is.na(opt$sig_contrib_matrix)) { + output_table <- t(fit_res$contribution) / rowSums(t(fit_res$contribution)) + colnames(output_table) <- paste0("s", colnames(output_table)) + if (length(levels(factor(levels_table$level))) > 1) { + output_table <- data.frame(sample = paste0(metadata_table[metadata_table$element_identifier == colnames(fit_res$contribution), + 3], "-", colnames(fit_res$contribution)), + output_table) + } else { + output_table <- data.frame(sample = rownames(output_table), output_table) + } + write.table(output_table, file = opt$sig_contrib_matrix, sep = "\t", quote = F, row.names = F) + } + + # calculate all pairwise cosine similarities + cos_sim_ori_rec <- cos_sim_matrix(pseudo_mut_mat, fit_res$reconstructed) + # extract cosine similarities per sample between original and reconstructed + cos_sim_ori_rec <- as.data.frame(diag(cos_sim_ori_rec)) + + # We can use ggplot to make a barplot of the cosine similarities between the original and + # reconstructed mutational profile of each sample. This clearly shows how well each mutational + # profile can be reconstructed with the COSMIC mutational signatures. Two identical profiles + # have a cosine similarity of 1. The lower the cosine similarity between original and + # reconstructed, the less well the original mutational profile can be reconstructed with + # the COSMIC signatures. You could use, for example, cosine similarity of 0.95 as a cutoff. + + # Adjust data frame for plotting with gpplot + colnames(cos_sim_ori_rec) <- "cos_sim" + cos_sim_ori_rec$sample <- row.names(cos_sim_ori_rec) + # Make barplot + p9 <- ggplot(cos_sim_ori_rec, aes(y = cos_sim, x = sample)) + + geom_bar(stat = "identity", fill = "skyblue4") + + coord_cartesian(ylim = c(0.8, 1)) + + # coord_flip(ylim=c(0.8,1)) + + ylab("Cosine similarity\n original VS reconstructed") + + xlab("") + + # Reverse order of the samples such that first is up + # xlim(rev(levels(factor(cos_sim_ori_rec$sample)))) + + theme_bw() + + theme(panel.grid.minor.y = element_blank(), + panel.grid.major.y = element_blank()) + + # Add cut.off line + geom_hline(aes(yintercept = .95)) + grid.arrange(p9, top = textGrob("Similarity between true and reconstructed profiles (with all Cosmic sig.)", gp = gpar(fontsize = 12, font = 3))) + dev.off() +} + + +# Output RData file +if (!is.null(opt$rdata)) { + save.image(file = opt$rdata) +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mutational_patterns.xml Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,297 @@ +<tool id="mutational_patterns" name="Analyse Mutational Patterns/Signatures" version="2.0.0+galaxy14"> + <description>from genomic variations in vcf files</description> + <requirements> + <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> + <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement> + <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement> + <requirement type="package" version="0.21.0=r40h0357c0b_1004">r-nmf</requirement> + <requirement type="package" version="2.3=r40h6115d3f_1003">r-gridextra</requirement> + <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> + <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> +<!-- + <requirement type="package" version="1.3.1000=r40_4">bioconductor-bsgenome.hsapiens.ncbi.grch38</requirement> + <requirement type="package" version="0.99.1=r40_4">bioconductor-bsgenome.hsapiens.1000genomes.hs37d5</requirement> +--> +<!-- +install more bioconda genomes +bioconductor-bsgenome.mmusculus.ucsc.mm9 +bioconductor-bsgenome.mmusculus.ucsc.mm10 +--> + </requirements> + <stdio> + <exit_code range="1:" level="fatal" description="Tool exception" /> + </stdio> + + <command detect_errors="exit_code"><![CDATA[ +#import json +#import os +Rscript $__tool_directory__/mutational_patterns.R + --inputs + #set $filename_to_element_identifiers = {} + #for $sample in $vcfs: + $filename_to_element_identifiers.__setitem__(str($sample), $sample.element_identifier) + #end for + '#echo json.dumps(filename_to_element_identifiers)#' + --genome '$genome' + + #if $set_levels.choices == 'yes': + --levels '$set_levels.levels' + #end if + + #if $set_spectrum.choices == 'yes': + --output_spectrum $spectrum + #end if + + #if $set_denovo.choices == 'yes': + --nrun $set_denovo.nrun + --rank $set_denovo.rank + --newsignum $set_denovo.newsignum + --output_denovo $denovo + --sigmatrix $sigmatrix + #end if + + #if $set_cosmic.choices == 'yes': + --cosmic_version '$set_cosmic.cosmic_version' + --signum '$set_cosmic.signum' + --output_cosmic $cosmic + #if $set_cosmic.contrib_matrix_out + --sig_contrib_matrix $sig_contrib_matrix + #end if + #end if + + #if $rdata_out + --rdata '$rdata' + #end if + +]]></command> + <inputs> + <param name="vcfs" type="data_collection" format="vcf" label="VCF file(s) collection" multiple="true"/> + <param name="genome" type="select" label="Reference Genome"> + <!-- <option value="BSgenome.Hsapiens.1000genomes.hs37d5">BSgenome.Hsapiens.1000genomes.hs37d5</option> --> + <!-- <option value="BSgenome.Hsapiens.NCBI.GRCh38">BSgenome.Hsapiens.NCBI.GRCh38</option> --> + <option value="BSgenome.Hsapiens.UCSC.hg19">BSgenome.Hsapiens.UCSC.hg19</option> + <option value="BSgenome.Hsapiens.UCSC.hg38" selected="true">BSgenome.Hsapiens.UCSC.hg38</option> + <!--<option value="BSgenome.Mmusculus.UCSC.mm10">BSgenome.Mmusculus.UCSC.mm10</option> + <option value="BSgenome.Mmusculus.UCSC.mm9">BSgenome.Mmusculus.UCSC.mm9</option>--> + </param> + <conditional name="set_levels"> + <param name="choices" type="select" label="samples have levels/labels for grouping them in the analysis" display="radio" + help="for instance, female/male or genotype-1/genotype-2/genotype-3, etc."> + <option value="no" selected="true">No</option> + <option value="yes">Yes</option> + </param> + <when value="yes"> + <param name="levels" type="data" format="tabular" + label="A two-column tab-separated file describing levels attributed to each sample name" + help="Tip: the sample name list in the vcf collection can be obtained using + the IUC Galaxy tool 'Extract element identifiers of a list collection' <br> + example:<br> + sample1 female<br> + sample2 female<br> + sample3 male<br> + sample4 female<br> + sample5 male<br> + sample5 male" /> + </when> + <when value="no" /> + </conditional> + <conditional name="set_spectrum"> + <param name="choices" type="select" label="Analyse Mutational Spectrum" display="radio"> + <option value="yes" selected="true">Yes</option> + <option value="no">No</option> + </param> + <when value="yes" /> + <when value="no" /> + </conditional> + + <conditional name="set_denovo"> + <param name="choices" type="select" label="Extract de novo signatures with MutationalPatterns" display="radio"> + <option value="yes" selected="true">Yes</option> + <option value="no">No</option> + </param> + <when value="yes"> + <param name="nrun" type="integer" value="10" min="10" max="200" + label="Number of cycles to find best fitting of signatures" + help="High values extend the computational time"/> + <param name="rank" type="integer" value="4" min="3" max="30" + label="Number of ranks to be displayed for control of optimal number of signature" + help="High values extend the computational time. In addition the number of ranks cannot be greater than the number of available samples in the study"/> + <param name="newsignum" type="integer" value="4" min="2" max="30" + label="Number of de novo signatures to capture" + help="High values extend the computational time. Note also that you cannot extract more signature than the number of available samples in the study"/> + </when> + <when value="no" /> + </conditional> + + <conditional name="set_cosmic"> + <param name="choices" type="select" label="Decompose with Cosmic signature v2" display="radio"> + <option value="yes" selected="true">Yes</option> + <option value="no">No</option> + </param> + <when value="yes"> + <param name="signum" type="integer" value="3" min="2" max="30" + label="selects the N most significant signatures in samples to express mutational patterns" + help="an integer between 2 and 30 signature types from cosmic"/> + <param name="cosmic_version" type="select" label="Version of the Cosmic signature set"> + <option value="v2" selected="true">Cosmic v2, March 2015</option> + <option value="v3">Cosmic v3, May 2019</option> + </param> + <param name="contrib_matrix_out" type="boolean" checked="false" label="Output Signature Contribution table ?" + help="Output the normalized signatures contributions for further visualization" /> + </when> + <when value="no" /> + </conditional> + <param name="rdata_out" type="boolean" checked="false" label="Output RData file?" help="Output all the data used by R to construct the tables and plots, can be loaded into R" /> + </inputs> + <outputs> + <data name="spectrum" format="pdf" label="Mutational Spectrum"> + <filter>set_spectrum['choices'] == "yes"</filter> + </data> + <data name="denovo" format="pdf" label="De novo signatures"> + <filter>set_denovo['choices'] == "yes"</filter> + </data> + <data name="sigmatrix" format="tabular" label="De novo signatures probability matrix"> + <filter>set_denovo['choices'] == "yes"</filter> + </data> + <data name="cosmic" format="pdf" label="Cosmic signatures"> + <filter>set_cosmic['choices'] == "yes"</filter> + </data> + <data name="sig_contrib_matrix" format="tabular" label="${tool.name}: Signature contribution table"> + <filter>set_cosmic['contrib_matrix_out']</filter> + </data> + + <data name="rdata" format="rdata" label="${tool.name}: RData file"> + <filter>rdata_out</filter> + </data> + + </outputs> + <tests> + <!-- simple profile --> + <test> + <param name="vcfs"> + <collection type="list"> + <element name="1" ftype="vcf" value="G.vcf"/> + <element name="2" ftype="vcf" value="H.vcf"/> + </collection> + </param> + <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/> + <conditional name="set_levels"> + <param name="choices" value="yes"/> + </conditional> + <param name="levels" value="GH_levels.tab" ftype="tabular"/> + <conditional name="set_spectrum"> + <param name="choices" value="yes"/> + </conditional> + <conditional name="set_denovo"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_cosmic"> + <param name="choices" value="no"/> + </conditional> + <output name="spectrum" file="spectrum_output1.pdf" compare="sim_size"/> + </test> + + <!-- de novo signatures --> + <test> + <param name="vcfs"> + <collection type="list"> + <element name="6" value="F.vcf"/> + <element name="7" value="G.vcf"/> + <element name="8" value="H.vcf"/> + <element name="9" value="I.vcf"/> + </collection> + </param> + <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/> + <conditional name="set_spectrum"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_denovo"> + <param name="choices" value="yes"/> + </conditional> + <conditional name="set_cosmic"> + <param name="choices" value="no"/> + </conditional> + <param name="nrun" value="10" /> + <param name="rank" value="4" /> + <param name="newsignum" value="4" /> + <param name="rdata_out" value="true" /> + <output name="denovo" file="denovo_output1.pdf" compare="sim_size"/> + <output name="sigmatrix" file="sigmatrix.tab" compare="sim_size"/> + <output name="rdata" file="denovo_1.RData" compare="sim_size" delta="400000"/> <!-- delta="170000" --> + </test> + + <!-- cosmic signatures --> + <test> + <param name="vcfs"> + <collection type="list"> + <element name="6" value="F.vcf"/> + <element name="7" value="G.vcf"/> + <element name="8" value="H.vcf"/> + <element name="9" value="I.vcf"/> + </collection> + </param> + <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/> + <param name="levels" value="FGHI_levels.tab" ftype="tabular"/> + <conditional name="set_spectrum"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_denovo"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_cosmic"> + <param name="choices" value="yes"/> + <param name="contrib_matrix_out" value="true" /> + </conditional> + <param name="signum" value="3" /> + <output name="cosmic" file="cosmic_output1.pdf" compare="sim_size"/> + <output name="sig_contrib_matrix" file="sig_contrib_table.tsv" compare="sim_size"/> + </test> + <!-- cosmic signature on single sample --> + <test> + <param name="vcfs"> + <collection type="list"> + <element name="1" value="G.vcf"/> + </collection> + </param> + <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/> + <conditional name="set_spectrum"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_denovo"> + <param name="choices" value="no"/> + </conditional> + <conditional name="set_cosmic"> + <param name="choices" value="yes"/> + </conditional> + <param name="signum" value="5" /> + <output name="cosmic" file="cosmic_output2.pdf" compare="sim_size" delta="50000"/> + </test> + </tests> + <help> + +**What it does** + +Takes as inputs + +* a collection of n vcf files corresponding to n samples. +* a tabular table describing the correspondance of sample names to levels (tissues, ages, sexes, etc.) +* the number of cosmic signatures to decompose mutational patterns of samples + + +This tool returns a pdf file with the visualisation : + +* the Cosine similarity of samples when decomposed over the 30 signatures of cosmic_ +* the absolute contribution of the n most contributing cosmic_ signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* the relative contribution of the n most contributing cosmic_ signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* a clustering of the samples with respect to the relative contribution of their cosmic_ signatures +* pie charts of the samples displaying for each sample the relative contribution of the n most contributing cosmic_ signatures to their mutational pattern + +.. _cosmic: https://cancer.sanger.ac.uk/cosmic/signatures_v2.tt + + </help> + <citations> + <citation type="doi">10.18129/B9.bioc.MutationalPatterns</citation> + <citation type="doi">10.1186/s13073-018-0539-0</citation> + <citation type="doi">10.1038/nature12477</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sigProfiler_SBS_signatures_2019_05_22.tsv Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,97 @@ +Type SubType Somatic Mutation Type SBS1 SBS2 SBS3 SBS4 SBS5 SBS6 SBS7a SBS7b SBS7c SBS7d SBS8 SBS9 SBS10a SBS10b SBS11 SBS12 SBS13 SBS14 SBS15 SBS16 SBS17a SBS17b SBS18 SBS19 SBS20 SBS21 SBS22 SBS23 SBS24 SBS25 SBS26 SBS27 SBS28 SBS29 SBS30 SBS31 SBS32 SBS33 SBS34 SBS35 SBS36 SBS37 SBS38 SBS39 SBS40 SBS41 SBS42 SBS43 SBS44 SBS45 SBS46 SBS47 SBS48 SBS49 SBS50 SBS51 SBS52 SBS53 SBS54 SBS55 SBS56 SBS57 SBS58 SBS59 SBS60 SBS84 SBS85 +C>A ACA A[C>A]A 8.86E-04 5.80E-07 2.08E-02 4.22E-02 1.20E-02 4.25E-04 6.70E-05 2.33E-03 4.83E-03 4.04E-05 4.41E-02 5.58E-04 2.19E-03 1.82E-04 1.46E-04 4.52E-03 1.82E-03 1.12E-03 9.44E-04 1.60E-02 2.07E-03 6.08E-04 5.15E-02 1.27E-03 6.19E-04 1.57E-04 6.01E-03 8.35E-04 3.64E-02 9.90E-03 8.73E-04 5.21E-03 7.84E-04 6.32E-02 1.80E-03 9.54E-03 2.23E-02 3.11E-03 4.87E-03 8.83E-03 2.52E-02 3.95E-03 1.28E-02 1.17E-02 2.82E-02 2.11E-03 1.16E-03 2.95E-02 7.68E-18 9.11E-03 4.40E-03 6.78E-02 8.55E-04 2.51E-02 1.19E-01 1.41E-01 1.52E-02 5.38E-03 2.16E-03 5.88E-03 1.26E-02 1.23E-02 5.89E-02 3.59E-03 6.15E-03 0.003471994832 0.006080257390 +C>A ACC A[C>A]C 2.28E-03 1.48E-04 1.65E-02 3.33E-02 9.44E-03 5.24E-04 1.79E-04 4.61E-04 1.15E-03 7.65E-04 4.78E-02 4.09E-03 1.77E-03 6.54E-03 5.52E-04 1.13E-03 7.21E-04 1.31E-02 4.97E-04 2.90E-03 9.18E-04 1.29E-04 1.58E-02 6.41E-04 1.39E-03 2.36E-03 9.54E-05 3.99E-04 2.65E-02 7.00E-03 5.28E-04 4.74E-03 2.53E-03 5.12E-02 5.06E-04 1.85E-02 1.88E-02 2.23E-03 6.96E-03 4.62E-02 8.32E-03 1.45E-03 1.01E-02 7.15E-03 1.34E-02 1.22E-03 2.06E-02 5.90E-03 1.50E-04 2.85E-03 4.70E-03 2.97E-02 8.41E-04 7.03E-03 1.27E-01 1.69E-03 6.54E-03 1.96E-03 7.96E-04 2.05E-03 1.57E-02 1.43E-03 6.75E-03 2.37E-03 7.79E-04 0.005007308997 0.000879936873 +C>A ACG A[C>A]G 1.77E-04 5.23E-05 1.75E-03 1.56E-02 1.85E-03 5.20E-05 7.12E-05 1.86E-04 3.77E-04 2.50E-04 4.62E-03 4.26E-04 1.50E-04 5.35E-05 9.41E-05 5.40E-04 2.64E-04 4.13E-04 4.61E-05 1.02E-03 4.76E-05 5.82E-05 2.43E-03 2.46E-04 2.18E-05 2.94E-04 7.65E-04 9.85E-08 1.48E-02 1.45E-03 1.14E-04 7.83E-04 3.53E-04 1.92E-02 9.13E-05 1.66E-03 4.46E-03 4.14E-04 5.20E-05 1.39E-03 2.24E-03 1.06E-03 1.90E-03 2.67E-03 2.92E-03 6.14E-05 3.34E-05 6.26E-04 9.16E-07 1.66E-03 3.00E-04 1.38E-03 2.58E-04 7.11E-03 5.77E-03 4.80E-03 4.14E-03 3.81E-02 1.64E-03 4.49E-05 2.06E-04 3.33E-03 8.25E-04 1.42E-04 2.23E-16 0.000452641972 0.000306011349 +C>A ACT A[C>A]T 1.28E-03 9.78E-05 1.22E-02 2.95E-02 6.61E-03 1.80E-04 2.48E-04 7.10E-04 1.96E-03 4.05E-03 4.70E-02 3.05E-03 1.70E-02 1.63E-05 2.66E-04 1.22E-03 3.48E-04 8.26E-02 1.11E-03 1.06E-02 6.18E-05 4.56E-04 2.14E-02 5.71E-04 1.24E-03 6.21E-04 1.72E-03 5.61E-18 2.20E-02 4.97E-03 6.19E-04 2.72E-03 3.97E-03 3.56E-02 5.56E-04 6.28E-03 1.46E-02 1.90E-03 1.23E-03 2.16E-02 1.79E-02 1.85E-03 8.85E-03 7.40E-03 1.48E-02 1.33E-03 7.97E-03 2.07E-03 5.78E-03 9.64E-03 3.40E-03 1.19E-02 3.89E-05 7.97E-03 8.32E-02 2.12E-02 9.24E-03 1.71E-05 4.14E-04 1.17E-03 2.30E-02 8.64E-03 5.58E-03 1.45E-02 4.44E-04 0.009295948365 0.002717279233 +C>A CCA C[C>A]A 3.12E-04 2.08E-04 2.25E-02 8.07E-02 7.43E-03 1.82E-03 4.55E-04 1.14E-03 1.09E-04 1.45E-02 4.01E-02 4.80E-03 3.18E-03 5.21E-04 6.18E-04 5.42E-03 1.40E-03 1.63E-02 4.18E-02 1.04E-02 2.95E-04 2.71E-04 7.40E-02 1.32E-03 3.76E-02 2.22E-16 1.83E-03 1.51E-04 2.54E-02 1.48E-02 1.41E-03 5.07E-03 2.03E-03 5.42E-02 7.68E-04 1.07E-02 1.24E-03 2.70E-03 1.95E-03 2.99E-02 5.58E-02 3.22E-03 3.81E-01 1.01E-02 2.08E-02 2.38E-03 1.16E-02 6.63E-03 2.84E-05 2.38E-01 1.56E-02 2.46E-02 1.18E-03 2.29E-01 2.25E-02 6.98E-03 5.74E-02 3.34E-01 6.32E-05 6.25E-03 2.48E-03 8.70E-03 6.18E-03 2.23E-03 1.18E-03 0.000000000000 0.004264235123 +C>A CCC C[C>A]C 1.79E-03 9.53E-05 2.53E-02 7.97E-02 6.14E-03 4.09E-03 2.40E-04 1.55E-03 3.09E-03 3.22E-03 3.88E-02 1.92E-03 2.02E-04 3.18E-03 9.86E-04 4.28E-03 9.68E-04 1.97E-02 5.05E-03 9.03E-03 1.16E-03 4.11E-05 1.96E-02 7.67E-04 9.89E-02 2.60E-03 4.43E-03 6.30E-04 3.49E-02 7.82E-03 1.51E-03 2.23E-03 1.09E-04 3.69E-02 3.88E-04 1.16E-02 4.92E-03 1.91E-03 3.67E-05 3.30E-02 2.02E-02 8.14E-04 6.95E-02 9.06E-03 1.47E-02 9.19E-04 3.28E-02 8.20E-05 3.03E-02 1.51E-01 7.20E-03 5.27E-03 3.57E-05 2.86E-02 2.89E-03 3.17E-03 1.90E-02 3.55E-03 2.57E-03 3.75E-03 6.68E-03 3.94E-03 1.83E-03 5.93E-03 2.53E-04 0.005218571801 0.000306234865 +C>A CCG C[C>A]G 9.32E-05 2.23E-16 2.51E-03 2.45E-02 3.46E-03 1.65E-03 2.23E-16 4.08E-04 1.91E-03 8.51E-05 3.41E-03 1.37E-03 4.64E-05 8.38E-05 9.20E-06 1.17E-03 4.33E-06 1.38E-03 6.62E-05 1.74E-03 2.22E-16 2.23E-16 1.20E-02 2.36E-04 7.43E-03 1.98E-03 1.36E-04 1.30E-04 1.60E-02 1.28E-03 3.62E-04 2.66E-04 2.22E-16 1.48E-02 4.07E-04 3.29E-04 1.66E-05 3.71E-04 2.98E-04 2.20E-03 7.10E-03 7.47E-04 5.10E-02 5.74E-03 2.54E-03 2.61E-04 1.88E-03 2.56E-05 3.74E-03 6.79E-02 4.50E-03 2.71E-04 1.37E-01 5.15E-01 5.18E-18 4.30E-03 1.36E-02 6.77E-02 5.93E-03 6.41E-04 6.72E-18 1.07E-03 1.46E-03 8.15E-04 3.79E-04 0.000069231298 0.000157256840 +C>A CCT C[C>A]T 2.23E-16 4.21E-04 1.54E-02 6.90E-02 6.49E-03 9.60E-03 3.72E-04 1.49E-03 1.35E-02 1.17E-04 3.30E-02 3.06E-03 1.73E-02 8.33E-03 1.50E-04 1.10E-03 2.22E-16 2.60E-01 2.87E-02 2.49E-03 1.37E-04 1.82E-04 3.63E-02 3.44E-05 2.52E-01 1.91E-02 1.10E-04 5.80E-04 1.71E-02 1.26E-02 7.14E-03 3.10E-03 2.03E-04 5.19E-02 2.97E-04 2.79E-02 2.67E-03 2.53E-03 6.20E-04 8.25E-02 6.05E-02 1.77E-03 1.84E-01 6.03E-03 1.47E-02 2.65E-03 2.11E-02 5.22E-18 8.67E-02 1.94E-01 8.30E-03 6.82E-04 8.45E-04 4.90E-02 1.15E-03 5.07E-03 1.88E-02 4.92E-03 5.53E-03 2.84E-05 7.13E-02 8.21E-03 1.96E-03 2.02E-03 5.41E-05 0.005640381180 0.000860850681 +C>A GCA G[C>A]A 1.58E-03 8.62E-05 7.13E-03 3.16E-02 1.02E-02 4.27E-04 4.06E-05 7.46E-04 1.05E-03 1.68E-04 2.42E-02 7.72E-03 1.21E-03 7.31E-04 1.65E-04 1.98E-03 9.49E-04 2.08E-03 2.29E-03 8.61E-03 1.78E-03 9.98E-04 1.09E-01 8.14E-04 1.08E-02 2.14E-03 2.23E-03 3.37E-04 6.22E-02 1.35E-02 4.96E-04 1.08E-02 1.56E-04 9.71E-02 9.43E-04 1.31E-02 4.51E-03 4.41E-03 2.81E-03 9.87E-03 6.77E-02 2.04E-03 1.20E-02 6.88E-03 1.42E-02 3.09E-03 7.71E-03 9.30E-03 7.68E-18 7.55E-03 7.20E-03 1.11E-02 7.52E-04 7.88E-03 1.42E-02 3.94E-03 8.24E-03 4.32E-04 5.19E-03 8.55E-04 2.17E-04 1.89E-03 2.74E-03 1.03E-01 5.17E-04 0.002703472389 0.001439703098 +C>A GCC G[C>A]C 3.39E-04 2.23E-16 1.09E-02 3.48E-02 7.65E-03 9.13E-04 1.38E-04 2.15E-04 7.42E-04 2.22E-16 2.62E-02 6.68E-03 4.41E-04 2.55E-03 4.05E-04 4.17E-04 4.51E-04 2.24E-02 2.49E-03 4.25E-03 1.28E-03 2.78E-06 1.73E-02 2.72E-04 5.65E-03 7.07E-03 1.73E-03 5.41E-04 1.28E-01 6.47E-03 6.66E-04 1.24E-02 1.02E-03 9.03E-02 4.94E-04 2.15E-02 3.62E-03 9.68E-04 4.68E-04 5.02E-02 1.92E-02 6.29E-04 6.28E-03 6.95E-03 1.02E-02 7.23E-04 2.68E-02 1.69E-03 4.67E-03 5.73E-03 3.00E-03 3.48E-03 3.46E-04 2.48E-03 7.58E-03 3.28E-03 7.32E-03 3.44E-03 9.13E-03 1.92E-04 7.34E-03 7.52E-04 1.08E-03 1.29E-01 8.66E-04 0.010228858800 0.000504268015 +C>A GCG G[C>A]G 5.87E-04 1.39E-05 1.43E-03 1.53E-02 2.34E-03 3.57E-04 4.25E-05 7.29E-05 2.22E-16 1.82E-05 2.74E-03 1.71E-04 1.05E-05 8.52E-05 1.39E-05 4.47E-04 1.64E-04 1.11E-03 4.04E-04 1.36E-03 1.06E-04 9.24E-05 7.56E-03 2.05E-04 1.57E-03 1.69E-03 5.15E-04 1.19E-04 6.59E-02 6.58E-04 1.29E-04 1.63E-03 3.95E-05 2.30E-02 2.22E-16 9.72E-04 8.77E-04 3.42E-04 2.27E-04 5.07E-04 4.83E-03 5.06E-04 1.37E-03 4.53E-03 2.55E-03 2.20E-04 1.06E-03 1.77E-04 6.05E-04 2.09E-03 4.00E-04 7.83E-04 7.39E-04 6.83E-03 2.44E-04 4.28E-03 4.04E-03 5.08E-02 5.64E-03 7.72E-05 9.79E-06 6.57E-18 2.73E-03 1.21E-02 3.90E-04 0.000763601342 0.000362282705 +C>A GCT G[C>A]T 2.23E-16 5.12E-05 1.00E-02 2.12E-02 6.82E-03 1.23E-03 2.23E-16 1.47E-04 3.63E-04 7.40E-05 2.69E-02 8.56E-03 1.11E-02 2.80E-03 2.22E-16 2.75E-05 6.15E-05 1.26E-01 1.82E-02 5.80E-03 4.70E-05 5.34E-04 6.23E-02 2.73E-04 2.49E-03 8.90E-03 5.51E-04 3.09E-05 5.44E-02 1.05E-02 8.17E-04 7.41E-03 1.58E-04 8.46E-02 8.62E-04 3.51E-03 3.27E-03 3.19E-03 1.35E-05 2.29E-02 6.90E-02 1.29E-03 9.09E-03 5.89E-03 1.08E-02 1.95E-03 1.81E-02 1.39E-03 1.13E-02 6.99E-03 2.40E-03 1.41E-03 1.99E-05 5.84E-03 2.04E-03 3.45E-03 4.21E-03 1.14E-03 6.73E-03 7.38E-04 1.57E-02 1.95E-03 3.50E-04 4.99E-01 1.33E-04 0.010179165989 0.000762947056 +C>A TCA T[C>A]A 6.58E-05 6.39E-04 8.41E-03 3.98E-02 7.86E-03 3.56E-04 3.90E-04 2.90E-03 2.52E-03 1.14E-02 2.98E-02 1.70E-02 9.40E-02 4.46E-04 1.80E-04 3.48E-03 7.90E-02 3.47E-04 1.72E-02 1.08E-02 1.90E-04 1.24E-05 7.38E-02 1.38E-03 1.71E-03 1.46E-03 7.84E-04 2.13E-03 2.98E-02 6.94E-03 9.38E-04 7.08E-03 1.43E-02 4.52E-02 6.96E-04 1.86E-03 9.73E-03 1.19E-02 4.27E-03 5.27E-03 1.41E-01 2.00E-03 1.77E-02 5.98E-03 2.60E-02 3.31E-03 5.10E-03 6.30E-03 8.53E-04 6.40E-02 1.23E-02 1.69E-02 1.24E-01 3.29E-02 1.90E-02 3.57E-02 4.64E-01 2.67E-03 6.69E-04 1.74E-03 2.19E-01 1.43E-02 7.37E-03 2.37E-05 2.02E-03 0.002083564327 0.001944387330 +C>A TCC T[C>A]C 2.53E-03 1.70E-04 1.68E-02 4.69E-02 9.17E-03 4.98E-04 6.36E-04 3.52E-03 1.42E-02 7.76E-03 2.51E-02 2.46E-03 9.97E-03 3.80E-03 9.38E-04 2.88E-03 2.94E-02 2.43E-02 5.81E-03 5.87E-03 2.59E-05 2.23E-16 4.36E-02 1.13E-03 3.37E-03 2.36E-04 1.74E-03 6.64E-04 5.19E-02 1.02E-02 6.30E-04 6.27E-03 4.52E-04 4.11E-02 2.43E-04 9.38E-03 9.29E-03 5.11E-03 1.22E-03 2.31E-02 7.72E-02 1.59E-03 1.15E-02 7.86E-03 2.10E-02 1.72E-03 5.40E-02 5.37E-06 2.22E-03 6.42E-02 7.10E-03 8.11E-05 3.79E-03 5.11E-03 8.86E-04 2.86E-03 4.68E-02 3.64E-03 4.05E-05 8.28E-18 1.32E-02 7.09E-04 4.29E-04 2.02E-02 1.63E-04 0.000009064386 0.000169427568 +C>A TCG T[C>A]G 2.23E-16 8.53E-05 1.41E-03 1.09E-02 2.30E-03 2.00E-04 3.44E-05 3.00E-04 2.22E-16 2.22E-16 1.90E-03 4.45E-04 1.16E-03 5.73E-04 2.22E-16 5.05E-04 1.21E-02 7.08E-06 7.69E-05 1.49E-03 2.22E-16 9.51E-05 1.27E-02 2.85E-04 2.22E-16 6.83E-05 2.22E-16 9.12E-05 9.79E-03 0.00E+00 1.23E-04 1.45E-03 1.29E-04 1.74E-02 8.26E-05 9.55E-04 2.38E-03 1.37E-03 2.22E-16 9.47E-05 1.47E-02 1.12E-03 2.38E-03 3.01E-03 3.17E-03 2.07E-04 9.04E-04 3.07E-18 3.15E-07 1.83E-02 2.50E-03 2.39E-05 7.09E-01 4.05E-02 4.19E-05 4.54E-03 1.34E-01 4.47E-04 8.28E-04 9.91E-05 5.46E-03 2.23E-04 2.73E-03 6.34E-04 2.05E-04 0.000000000000 0.000000003989 +C>A TCT T[C>A]T 5.88E-06 4.40E-04 9.97E-03 4.13E-02 1.27E-02 7.47E-04 6.13E-04 1.41E-03 3.73E-03 1.91E-04 3.19E-02 2.73E-02 6.70E-01 8.16E-02 4.73E-05 2.35E-03 3.55E-02 1.51E-01 8.05E-03 9.25E-03 2.88E-04 2.57E-03 1.22E-01 1.38E-03 9.04E-04 2.22E-16 3.96E-04 2.40E-04 2.28E-02 2.46E-02 1.40E-03 9.81E-03 5.57E-04 4.11E-02 6.65E-04 4.49E-03 9.64E-03 1.28E-02 3.20E-05 1.53E-02 2.08E-01 2.44E-03 2.78E-02 6.55E-03 2.41E-02 5.90E-03 2.73E-02 6.52E-18 1.66E-02 6.20E-02 3.00E-03 1.92E-04 1.87E-04 8.75E-03 1.85E-03 3.70E-04 6.10E-02 8.71E-04 7.20E-03 4.06E-03 4.02E-01 6.19E-03 1.47E-02 3.83E-03 4.06E-04 0.001203779266 0.002057492391 +C>G ACA A[C>G]A 1.86E-03 2.23E-16 1.97E-02 6.89E-03 1.01E-02 4.71E-04 6.49E-05 8.56E-06 1.12E-03 1.18E-03 4.33E-03 4.84E-03 2.23E-16 3.05E-04 1.70E-04 1.22E-03 3.87E-03 2.22E-16 1.13E-04 1.74E-03 1.01E-03 1.46E-04 1.73E-03 3.19E-03 8.77E-03 1.69E-05 1.66E-03 5.74E-18 3.34E-03 8.03E-03 4.27E-04 1.32E-03 1.54E-04 3.14E-03 1.07E-03 8.32E-03 1.99E-03 1.41E-03 7.62E-04 3.58E-03 1.84E-03 3.43E-02 2.69E-03 4.73E-02 1.22E-02 5.33E-03 4.06E-04 3.61E-04 3.18E-03 3.11E-03 1.20E-03 1.03E-03 1.98E-04 2.88E-04 3.85E-03 3.96E-03 1.73E-03 7.03E-03 1.55E-03 2.85E-03 4.18E-04 1.54E-02 2.06E-02 2.94E-03 3.77E-04 0.006758077485 0.007234927130 +C>G ACC A[C>G]C 1.22E-03 1.33E-04 1.17E-02 2.84E-03 5.70E-03 2.89E-04 2.16E-05 1.89E-04 3.19E-04 2.55E-03 2.95E-03 1.96E-03 2.43E-05 1.34E-04 2.90E-04 6.42E-04 9.51E-04 5.78E-06 2.69E-04 2.01E-03 5.69E-04 4.34E-05 2.59E-03 1.79E-03 1.51E-03 7.19E-04 1.95E-04 4.08E-05 3.67E-03 1.64E-03 3.78E-04 1.77E-03 2.24E-04 2.63E-03 4.67E-04 3.16E-03 2.03E-03 1.30E-03 1.13E-03 4.55E-03 1.67E-03 1.12E-02 1.58E-03 2.25E-02 8.68E-03 3.16E-03 5.06E-04 3.13E-05 2.33E-04 1.93E-03 1.50E-03 6.17E-04 1.14E-04 1.35E-04 1.10E-03 4.54E-03 1.52E-03 5.46E-03 4.96E-04 1.68E-04 1.66E-04 3.13E-03 1.74E-03 2.44E-03 5.88E-04 0.010811956859 0.002551355408 +C>G ACG A[C>G]G 1.15E-04 1.52E-05 2.53E-04 1.28E-03 1.72E-03 2.22E-16 5.08E-05 5.05E-04 2.22E-16 9.06E-04 2.86E-04 1.36E-03 2.23E-16 2.22E-16 5.96E-05 7.51E-05 2.64E-04 3.91E-05 3.07E-05 8.47E-04 1.52E-04 2.23E-16 1.92E-03 6.16E-04 4.69E-04 2.22E-16 2.31E-04 2.86E-18 9.20E-04 0.00E+00 6.83E-05 0.00E+00 2.22E-16 8.96E-04 1.31E-04 3.00E-03 1.13E-03 2.53E-04 2.22E-16 3.46E-04 5.00E-04 5.35E-03 6.36E-04 1.36E-02 2.25E-03 1.21E-03 1.77E-05 4.43E-03 3.14E-05 2.70E-04 0.00E+00 3.28E-04 8.03E-05 2.04E-04 8.27E-04 1.97E-03 8.18E-04 2.51E-03 1.70E-03 5.10E-04 4.28E-04 2.77E-03 1.69E-03 8.30E-04 2.76E-04 0.000045986523 0.000422196736 +C>G ACT A[C>G]T 1.14E-03 9.12E-05 1.74E-02 3.55E-03 1.01E-02 2.54E-04 9.56E-05 2.85E-04 1.93E-03 2.91E-03 5.71E-03 6.41E-03 2.23E-16 2.22E-16 5.35E-04 1.44E-03 4.00E-03 2.04E-04 3.25E-04 1.15E-02 1.96E-05 3.19E-04 4.08E-03 2.14E-03 4.42E-03 6.19E-05 6.20E-05 5.61E-18 2.85E-03 3.43E-03 7.28E-04 1.32E-03 8.33E-05 2.49E-03 7.31E-04 3.78E-03 1.75E-03 1.30E-03 2.03E-03 9.48E-03 1.91E-03 1.88E-02 2.44E-03 4.34E-02 1.46E-02 8.27E-03 4.31E-04 3.54E-04 3.29E-03 1.43E-03 2.20E-03 1.72E-03 6.86E-04 1.76E-04 1.97E-03 9.00E-04 1.71E-03 3.04E-03 5.18E-03 1.27E-03 1.23E-04 5.07E-03 2.03E-03 3.83E-03 2.50E-04 0.029594216358 0.013019760586 +C>G CCA C[C>G]A 2.41E-05 2.23E-16 1.93E-02 7.83E-03 6.96E-03 4.11E-05 2.23E-16 4.58E-04 2.06E-04 1.32E-03 5.00E-03 8.93E-04 4.57E-05 2.99E-05 2.61E-04 1.34E-03 5.61E-03 8.55E-05 8.36E-05 3.55E-03 5.53E-04 1.94E-04 6.13E-04 1.77E-03 7.69E-05 1.97E-05 1.05E-03 1.74E-04 2.61E-03 7.20E-03 3.64E-04 4.73E-03 1.44E-05 3.29E-03 1.27E-03 2.05E-03 1.15E-03 1.50E-03 1.19E-04 3.86E-03 1.24E-03 4.42E-04 1.69E-03 2.88E-02 7.56E-03 2.08E-03 4.26E-03 2.09E-05 5.36E-05 1.43E-03 5.00E-04 9.56E-04 9.93E-05 2.16E-04 6.56E-05 2.85E-03 1.18E-03 2.72E-03 1.13E-03 2.94E-03 2.04E-04 8.88E-04 7.94E-04 2.08E-03 4.71E-05 0.000007117033 0.001223945047 +C>G CCC C[C>G]C 7.68E-05 3.51E-04 1.41E-02 6.87E-03 9.07E-03 3.72E-05 1.31E-04 9.60E-04 2.26E-03 2.86E-04 5.46E-03 1.54E-03 2.23E-16 2.22E-16 1.77E-04 8.91E-04 6.48E-04 7.86E-05 1.70E-05 4.54E-03 2.35E-04 4.66E-05 2.26E-03 1.81E-03 4.38E-06 2.73E-04 7.85E-04 2.55E-04 5.22E-03 4.60E-03 3.22E-04 1.26E-03 7.55E-05 6.34E-03 7.93E-04 1.86E-03 8.24E-04 4.10E-04 1.18E-04 6.30E-03 1.37E-03 3.13E-04 1.26E-03 3.77E-02 9.35E-03 1.20E-03 6.62E-03 2.12E-04 2.49E-05 8.00E-04 3.00E-04 2.37E-04 1.22E-04 2.56E-04 2.89E-04 1.20E-04 8.35E-04 6.03E-03 8.83E-04 2.86E-03 2.25E-04 2.87E-03 1.28E-03 1.73E-03 1.42E-04 0.003440786012 0.000210178860 +C>G CCG C[C>G]G 3.52E-04 4.87E-05 1.50E-03 3.40E-03 2.49E-03 8.43E-05 7.75E-05 7.91E-04 2.62E-04 1.32E-03 1.05E-05 4.37E-04 2.01E-05 2.22E-16 1.12E-05 1.73E-04 4.88E-04 1.91E-05 5.02E-05 1.46E-03 2.32E-04 2.23E-16 3.58E-03 4.81E-05 1.88E-04 1.01E-05 2.39E-04 1.86E-18 9.45E-04 8.24E-04 4.17E-05 3.61E-04 2.22E-16 1.30E-03 1.20E-04 8.54E-04 5.37E-04 3.18E-04 1.90E-04 8.70E-04 4.19E-04 3.21E-04 9.57E-04 1.23E-02 1.68E-03 4.11E-04 4.70E-04 2.54E-03 7.68E-18 6.43E-04 1.00E-04 6.70E-04 3.63E-05 2.38E-04 1.42E-03 2.03E-03 5.68E-04 1.62E-03 4.34E-04 2.64E-04 6.66E-05 7.63E-04 5.11E-05 6.90E-04 3.37E-04 0.000002195949 0.000040247509 +C>G CCT C[C>G]T 2.23E-16 6.36E-05 2.23E-02 6.82E-03 9.53E-03 1.44E-05 9.56E-05 8.90E-04 4.24E-03 2.22E-16 5.49E-03 3.03E-03 3.01E-05 2.22E-16 9.64E-06 1.56E-03 6.40E-03 1.78E-04 8.45E-05 9.62E-03 3.90E-05 1.93E-04 3.79E-03 3.22E-03 1.01E-05 1.73E-04 3.20E-04 2.27E-04 4.71E-03 1.96E-04 6.25E-04 2.68E-04 2.22E-16 6.69E-03 1.02E-03 3.42E-03 4.95E-04 6.62E-04 7.36E-05 1.62E-02 2.09E-03 5.81E-04 1.27E-03 4.02E-02 1.39E-02 5.03E-03 6.84E-03 8.53E-04 8.64E-05 1.91E-03 1.50E-03 1.37E-04 2.45E-04 1.91E-04 5.12E-04 2.61E-03 1.20E-03 5.08E-04 1.33E-03 3.31E-03 7.69E-04 2.87E-03 1.25E-03 3.46E-03 1.46E-04 0.013308248775 0.000484083725 +C>G GCA G[C>G]A 9.59E-06 6.54E-05 1.27E-02 5.29E-03 4.68E-03 1.94E-05 1.96E-05 5.11E-05 1.82E-04 1.96E-04 2.58E-03 1.36E-03 1.50E-05 1.72E-05 4.67E-05 5.64E-04 1.50E-03 2.22E-16 9.94E-04 1.05E-03 8.78E-04 5.99E-05 6.35E-04 1.31E-03 6.69E-04 3.88E-04 1.40E-03 4.32E-18 2.72E-03 4.17E-03 3.95E-04 1.42E-03 1.83E-04 2.27E-03 5.15E-04 1.83E-03 8.76E-04 7.71E-04 3.34E-05 3.38E-03 8.86E-04 1.32E-03 1.20E-03 2.40E-02 5.06E-03 2.04E-03 2.40E-03 1.36E-02 2.19E-04 3.33E-04 1.00E-04 1.68E-03 7.84E-05 1.52E-04 2.67E-02 3.41E-03 1.38E-03 1.38E-03 2.19E-03 8.51E-04 1.87E-04 3.79E-03 2.12E-03 1.44E-03 1.63E-04 0.011151059622 0.001595924101 +C>G GCC G[C>G]C 1.64E-04 2.61E-04 8.63E-03 5.75E-03 5.08E-03 6.85E-04 3.32E-05 4.52E-04 4.73E-04 2.22E-16 2.39E-03 2.83E-03 8.31E-05 1.36E-04 1.14E-04 2.89E-04 4.79E-04 4.33E-05 6.08E-04 3.09E-03 8.35E-04 5.55E-05 1.34E-03 1.29E-03 2.86E-03 1.42E-03 9.30E-04 1.27E-04 5.79E-03 2.39E-03 5.79E-04 1.35E-03 2.22E-16 1.64E-03 2.56E-04 7.51E-03 9.00E-04 7.76E-04 1.93E-04 2.14E-02 1.08E-03 9.38E-04 1.08E-03 2.13E-02 5.37E-03 2.69E-03 1.42E-03 1.52E-02 1.19E-03 1.01E-03 8.00E-04 2.28E-03 2.17E-04 1.10E-04 3.30E-02 1.14E-03 1.45E-03 8.47E-02 2.20E-04 1.41E-03 9.83E-05 2.57E-03 1.49E-03 1.72E-03 1.35E-04 0.015758341831 0.005060362002 +C>G GCG G[C>G]G 1.66E-04 2.23E-16 2.42E-03 3.30E-03 1.51E-03 2.22E-16 4.51E-05 3.37E-04 1.80E-04 5.45E-04 4.88E-04 5.21E-04 2.23E-16 2.22E-16 3.24E-06 9.54E-05 2.41E-04 2.22E-16 1.01E-05 8.13E-05 2.37E-05 2.23E-16 6.39E-04 5.97E-04 6.92E-04 1.17E-04 2.11E-04 1.83E-18 3.14E-03 4.18E-04 7.38E-05 0.00E+00 2.22E-16 6.88E-06 1.17E-04 4.57E-04 6.86E-05 4.66E-05 2.22E-16 5.91E-04 1.72E-04 5.77E-04 1.02E-03 9.86E-03 1.19E-03 1.56E-04 2.23E-04 1.28E-02 7.68E-18 6.95E-04 0.00E+00 4.65E-04 4.31E-05 3.67E-05 2.80E-03 2.67E-04 1.01E-03 3.00E-03 1.59E-03 5.72E-03 5.62E-06 1.86E-03 1.71E-03 3.59E-04 2.02E-04 0.001697967239 0.000026827588 +C>G GCT G[C>G]T 2.23E-16 1.34E-04 1.47E-02 3.04E-03 6.72E-03 3.21E-04 4.20E-05 2.77E-04 1.28E-03 8.82E-04 4.86E-03 8.57E-03 3.54E-05 1.13E-04 1.86E-04 5.04E-04 2.70E-03 8.03E-05 4.51E-04 3.23E-03 7.87E-04 2.23E-16 1.23E-03 3.20E-04 3.02E-03 2.07E-04 4.55E-04 4.04E-18 3.38E-03 1.99E-03 3.05E-04 4.56E-03 2.22E-16 3.21E-03 3.99E-04 3.36E-03 2.28E-04 9.31E-04 2.69E-05 8.74E-03 1.05E-03 1.27E-03 9.17E-04 3.24E-02 6.98E-03 3.56E-03 2.77E-03 1.80E-02 1.85E-03 9.32E-04 6.00E-04 2.22E-03 6.53E-05 2.08E-04 1.43E-02 2.85E-03 1.02E-03 5.73E-04 4.94E-03 6.82E-05 1.75E-06 4.36E-04 1.08E-03 2.26E-03 6.43E-05 0.076057560709 0.003186103940 +C>G TCA T[C>G]A 2.23E-16 2.23E-16 1.33E-02 3.58E-03 7.81E-03 4.97E-05 2.23E-16 2.54E-04 1.94E-03 3.74E-03 1.47E-03 2.69E-03 5.55E-05 2.22E-16 1.56E-05 9.69E-04 3.17E-01 1.97E-05 2.14E-04 2.51E-03 3.75E-03 1.60E-04 2.14E-03 1.75E-03 1.29E-04 6.54E-04 3.56E-03 2.11E-04 3.75E-03 9.80E-03 1.31E-03 2.87E-03 1.15E-04 1.07E-04 1.27E-04 3.96E-04 4.71E-18 1.30E-02 6.18E-07 6.63E-03 3.98E-03 1.79E-03 2.66E-03 3.47E-02 1.25E-02 1.99E-02 5.59E-04 4.42E-06 6.73E-04 3.30E-03 2.80E-03 1.38E-04 1.37E-04 4.80E-05 9.32E-04 2.05E-03 1.98E-03 3.74E-03 4.69E-03 7.06E-03 1.13E-03 2.28E-03 2.13E-03 2.35E-06 5.29E-04 0.000000000000 0.000947995470 +C>G TCC T[C>G]C 2.03E-04 9.87E-05 2.03E-02 5.95E-03 7.60E-03 1.13E-04 5.09E-05 1.62E-03 4.61E-03 5.88E-04 1.34E-03 2.00E-03 2.23E-16 2.22E-16 2.24E-04 1.55E-03 6.35E-02 1.50E-04 6.12E-05 5.23E-03 7.23E-04 6.18E-05 4.64E-03 3.12E-03 2.82E-05 6.31E-04 1.52E-03 2.66E-04 5.58E-03 3.27E-03 7.45E-04 3.11E-03 1.36E-04 6.83E-03 9.86E-04 2.92E-03 1.10E-03 2.51E-03 1.40E-04 5.63E-03 2.41E-03 1.11E-03 2.18E-03 3.67E-02 1.41E-02 1.42E-02 1.87E-03 1.03E-03 9.40E-06 2.01E-03 2.40E-03 1.19E-03 3.50E-04 1.53E-04 4.93E-04 3.61E-03 1.44E-03 4.99E-03 5.17E-04 3.28E-03 2.94E-04 2.80E-03 1.80E-03 2.09E-03 3.48E-04 0.000113943392 0.001869404519 +C>G TCG T[C>G]G 6.94E-05 4.12E-05 5.20E-04 1.83E-03 1.71E-03 1.95E-06 6.35E-06 3.64E-04 8.75E-06 8.73E-04 7.82E-05 4.04E-04 2.23E-16 2.22E-16 2.22E-16 2.14E-04 1.38E-02 1.83E-05 5.84E-05 4.39E-04 3.80E-04 1.55E-05 8.99E-04 4.41E-04 1.24E-04 6.27E-05 3.81E-04 2.56E-18 1.35E-03 2.06E-03 9.41E-05 1.28E-05 2.46E-05 8.97E-04 1.06E-04 4.16E-04 9.97E-04 8.04E-05 2.22E-16 1.55E-04 3.02E-04 8.60E-04 1.10E-03 9.62E-03 1.74E-03 1.93E-03 2.07E-04 1.47E-03 7.68E-18 1.78E-04 1.00E-04 0.00E+00 2.82E-05 6.33E-05 1.03E-04 2.16E-03 5.81E-04 1.87E-03 1.23E-03 2.29E-04 8.39E-05 1.33E-03 6.30E-04 4.05E-04 6.59E-05 0.000000720571 0.000169996975 +C>G TCT T[C>G]T 1.56E-03 1.18E-03 2.35E-02 3.38E-03 1.25E-02 1.28E-04 2.81E-04 7.14E-04 1.23E-02 8.53E-05 2.49E-04 5.63E-03 5.45E-05 4.34E-05 1.85E-04 3.05E-03 3.69E-01 3.21E-04 1.74E-04 2.85E-02 2.83E-04 1.50E-03 3.18E-03 1.61E-03 1.12E-03 6.87E-04 3.88E-04 4.66E-04 4.07E-03 1.64E-02 2.21E-03 2.13E-03 1.43E-04 3.36E-04 1.09E-04 4.24E-03 6.92E-04 2.01E-02 2.15E-03 2.12E-02 7.59E-03 2.55E-03 3.95E-03 5.07E-02 2.37E-02 4.46E-02 3.81E-04 2.51E-04 2.59E-03 3.29E-03 4.90E-03 9.24E-04 1.48E-04 5.44E-04 4.21E-04 3.33E-03 2.42E-03 3.74E-03 3.11E-04 2.11E-03 4.11E-04 1.29E-02 1.81E-02 1.52E-03 7.61E-04 0.004953383455 0.006244142553 +C>T ACA A[C>T]A 2.50E-02 6.11E-05 1.42E-02 8.70E-03 3.26E-02 6.41E-02 1.22E-04 1.41E-03 1.33E-03 3.33E-03 6.81E-03 8.10E-03 1.04E-03 5.49E-04 2.58E-02 5.51E-03 7.18E-03 1.24E-02 5.05E-03 1.76E-03 1.22E-03 5.71E-04 9.20E-03 2.80E-02 4.93E-02 2.17E-03 1.76E-03 2.26E-02 1.18E-02 2.10E-02 2.66E-03 1.37E-02 7.77E-04 5.09E-03 1.06E-01 1.77E-02 8.64E-02 5.31E-03 3.52E-03 2.21E-03 5.96E-03 6.24E-03 3.45E-03 9.60E-03 1.97E-02 9.88E-03 2.24E-02 2.90E-05 8.99E-02 1.33E-03 1.52E-02 4.27E-03 2.87E-04 5.75E-04 3.52E-03 3.58E-02 2.69E-03 7.22E-03 1.48E-03 5.11E-03 7.40E-03 3.26E-02 8.05E-02 3.92E-03 2.76E-03 0.053885768706 0.001374780580 +C>T ACC A[C>T]C 6.32E-03 1.38E-03 1.24E-02 4.18E-03 1.79E-02 2.29E-02 1.77E-02 3.81E-02 7.68E-03 1.40E-03 2.82E-03 5.42E-03 8.34E-04 5.25E-03 1.47E-01 2.12E-03 2.22E-16 1.01E-02 6.91E-03 3.73E-03 1.71E-03 7.03E-05 4.65E-03 1.41E-02 1.30E-02 3.92E-03 2.20E-04 8.09E-02 1.12E-02 1.31E-02 2.54E-03 5.42E-03 3.38E-03 4.31E-03 9.04E-02 9.28E-03 1.23E-01 2.13E-03 3.71E-03 3.99E-03 3.28E-03 3.06E-03 2.15E-03 4.04E-03 1.21E-02 3.36E-03 3.98E-02 1.28E-04 1.69E-02 6.01E-04 8.90E-03 9.40E-04 4.38E-04 3.03E-04 1.80E-03 5.65E-03 2.10E-03 1.96E-03 5.29E-04 2.33E-04 9.82E-04 1.29E-02 6.76E-03 2.86E-03 1.34E-03 0.042106831614 0.001478441742 +C>T ACG A[C>T]G 3.65E-01 3.27E-05 2.57E-03 7.83E-04 6.18E-03 1.20E-01 2.23E-16 5.43E-04 9.27E-04 1.21E-03 3.23E-03 4.38E-03 5.57E-03 4.14E-04 7.58E-03 1.18E-04 3.03E-04 2.65E-02 7.45E-02 3.27E-03 3.95E-05 2.87E-04 1.22E-02 1.55E-03 1.33E-02 7.40E-03 1.36E-03 8.72E-03 5.14E-04 1.97E-02 5.33E-03 6.71E-03 7.05E-03 2.01E-02 1.44E-02 7.59E-03 3.66E-02 7.16E-03 1.18E-04 5.80E-04 7.07E-03 6.33E-03 5.18E-03 6.00E-03 2.67E-04 3.43E-03 4.40E-04 1.22E-03 1.43E-02 5.41E-03 4.60E-03 3.05E-03 1.21E-03 2.01E-03 1.39E-02 5.65E-03 4.08E-03 6.95E-03 3.43E-04 5.32E-03 1.52E-03 1.76E-02 8.63E-03 2.56E-03 4.21E-03 0.002540673114 0.000443775624 +C>T ACT A[C>T]T 9.58E-03 1.86E-03 1.21E-02 4.25E-03 2.20E-02 2.13E-02 7.42E-03 1.08E-02 7.48E-03 3.29E-02 1.25E-02 6.49E-03 2.99E-03 7.93E-03 1.09E-01 2.38E-03 3.18E-04 1.61E-02 1.78E-03 6.00E-03 7.37E-04 1.47E-04 7.97E-03 3.68E-02 1.30E-02 4.17E-05 6.16E-04 3.50E-02 9.15E-03 5.73E-03 2.79E-03 4.48E-03 5.06E-03 1.83E-03 2.93E-02 1.01E-02 1.52E-01 3.07E-03 3.87E-03 9.00E-04 4.31E-03 5.65E-03 2.44E-03 1.28E-02 1.69E-02 6.35E-03 3.52E-02 9.10E-04 3.03E-02 1.22E-03 6.80E-03 2.49E-03 2.35E-04 4.15E-04 6.92E-03 3.20E-03 1.76E-03 1.94E-03 4.99E-03 7.76E-04 2.84E-03 1.54E-02 7.31E-03 3.39E-03 2.98E-04 0.054345874146 0.004563583260 +C>T CCA C[C>T]A 2.00E-03 4.32E-03 1.61E-02 1.27E-02 1.94E-02 1.36E-02 5.00E-02 1.07E-01 2.71E-03 3.56E-02 2.67E-03 7.24E-03 3.68E-05 1.51E-04 4.07E-03 6.59E-03 1.93E-05 2.73E-03 1.08E-02 7.17E-03 8.21E-04 4.57E-04 1.17E-02 1.19E-01 1.06E-02 1.35E-03 1.21E-03 6.22E-02 5.38E-03 1.43E-02 1.69E-03 1.74E-02 2.92E-04 7.61E-03 1.10E-01 4.12E-02 1.69E-02 4.59E-03 4.75E-03 5.10E-03 6.75E-03 3.61E-03 4.24E-03 9.11E-03 1.96E-02 6.91E-03 1.87E-02 7.62E-06 3.57E-03 2.14E-03 2.84E-02 8.64E-04 1.82E-05 4.70E-04 3.84E-03 3.23E-03 3.27E-03 1.46E-02 3.37E-03 7.25E-03 2.98E-04 1.49E-02 8.09E-03 2.87E-03 1.52E-03 0.018028129532 0.001636999066 +C>T CCC C[C>T]C 2.70E-04 1.70E-04 2.02E-02 1.15E-02 1.90E-02 1.48E-02 5.53E-02 1.82E-01 5.97E-03 2.60E-03 4.02E-03 8.76E-03 2.23E-16 8.44E-05 1.26E-01 2.54E-04 1.35E-03 1.38E-03 1.11E-02 2.84E-03 1.72E-03 5.89E-05 6.76E-03 9.20E-02 1.30E-02 5.16E-03 3.19E-03 1.89E-01 8.85E-03 5.94E-03 2.83E-03 7.14E-03 2.10E-04 1.64E-03 1.03E-01 1.64E-01 2.84E-02 1.53E-03 5.14E-04 8.32E-02 6.68E-03 2.10E-03 4.73E-03 3.86E-03 1.73E-02 1.85E-03 4.81E-02 4.35E-18 2.86E-03 5.07E-05 1.33E-02 4.61E-03 3.01E-04 4.93E-04 4.25E-03 4.70E-03 1.82E-03 4.60E-03 2.26E-04 4.00E-03 5.31E-04 1.21E-02 9.92E-03 4.09E-04 1.88E-03 0.040621303139 0.000369373076 +C>T CCG C[C>T]G 1.96E-01 2.77E-03 2.24E-03 3.31E-03 1.75E-02 1.22E-01 6.71E-03 2.21E-02 8.94E-03 2.64E-03 1.49E-03 6.51E-03 2.23E-16 3.70E-03 9.20E-04 4.09E-05 1.99E-03 1.16E-02 2.48E-02 6.91E-04 1.90E-03 5.43E-04 1.68E-02 1.57E-02 1.65E-02 6.22E-03 4.26E-04 1.42E-02 6.35E-03 1.16E-02 3.34E-03 7.50E-03 2.55E-03 1.53E-02 1.68E-02 8.20E-03 1.12E-02 5.88E-03 9.45E-03 2.67E-03 5.33E-03 3.27E-03 3.50E-03 7.57E-03 2.36E-03 1.01E-02 1.92E-03 9.72E-05 1.55E-02 2.20E-03 8.30E-03 1.52E-03 1.87E-05 1.38E-03 1.08E-03 2.07E-02 2.38E-03 1.37E-02 2.83E-02 6.59E-05 7.95E-03 6.40E-03 7.99E-03 1.10E-03 4.06E-03 0.000000000000 0.000024057242 +C>T CCT C[C>T]T 1.96E-04 1.45E-03 2.30E-02 1.60E-02 2.31E-02 1.38E-02 5.66E-02 1.26E-01 2.06E-02 1.38E-04 1.45E-02 1.11E-02 1.03E-04 5.95E-04 6.51E-02 3.38E-03 1.45E-03 1.36E-03 1.56E-02 1.93E-02 1.74E-03 1.36E-04 6.65E-03 2.58E-01 1.17E-02 3.25E-04 1.60E-03 1.56E-01 4.29E-03 1.36E-02 1.65E-03 7.15E-03 3.32E-03 6.73E-04 4.62E-02 1.45E-01 4.28E-02 2.70E-03 3.53E-05 4.70E-02 5.75E-03 6.06E-03 4.10E-03 6.99E-03 2.16E-02 7.73E-03 3.29E-02 7.44E-04 5.04E-03 2.73E-03 6.40E-03 3.00E-03 4.79E-04 5.19E-04 1.19E-02 4.06E-03 2.57E-03 1.60E-02 3.71E-03 7.19E-04 5.08E-04 3.20E-02 2.77E-02 2.42E-03 2.51E-03 0.042237294613 0.002350306147 +C>T GCA G[C>T]A 4.44E-03 2.23E-16 1.64E-02 4.09E-03 1.94E-02 9.36E-02 8.49E-05 8.55E-04 1.57E-04 3.65E-04 2.76E-04 6.98E-03 4.22E-05 3.63E-04 1.97E-02 4.48E-03 7.18E-03 1.71E-02 7.37E-02 6.50E-03 1.64E-03 6.11E-05 9.68E-03 6.10E-02 4.22E-02 9.32E-03 2.38E-03 5.37E-02 2.99E-02 1.00E-02 2.75E-03 1.42E-02 3.25E-03 1.04E-02 4.97E-02 6.80E-03 2.26E-02 5.35E-03 2.33E-04 7.29E-03 3.72E-03 2.55E-03 2.37E-03 8.03E-03 1.43E-02 6.01E-03 3.36E-02 7.66E-04 9.55E-02 1.00E-03 1.26E-02 1.06E-03 3.45E-04 1.84E-04 2.42E-03 4.47E-03 1.78E-03 9.18E-03 2.22E-04 6.50E-03 9.49E-06 5.14E-03 6.78E-03 2.44E-03 1.24E-03 0.089177561445 0.000887033367 +C>T GCC G[C>T]C 9.28E-05 1.29E-07 1.34E-02 4.46E-03 2.16E-02 1.11E-01 1.17E-02 2.63E-02 9.51E-06 1.81E-04 2.45E-04 6.53E-03 1.25E-02 1.51E-02 1.15E-01 1.82E-03 9.21E-04 8.16E-03 1.29E-01 5.29E-03 2.22E-16 1.57E-04 8.17E-03 3.97E-02 5.32E-02 1.96E-02 1.87E-03 1.54E-01 4.37E-02 6.95E-03 5.45E-03 2.01E-02 1.88E-04 7.96E-03 6.10E-02 1.14E-02 3.79E-02 5.14E-03 2.22E-16 1.78E-02 3.40E-03 2.31E-03 2.96E-03 4.50E-03 1.16E-02 8.64E-03 1.52E-01 4.10E-18 8.14E-02 9.33E-04 4.50E-03 1.71E-03 7.39E-06 1.18E-04 1.58E-03 3.09E-03 1.22E-03 1.19E-02 1.31E-02 1.51E-03 5.06E-04 6.93E-03 3.15E-03 2.35E-03 1.44E-03 0.111629551116 0.000484366313 +C>T GCG G[C>T]G 2.18E-01 2.23E-16 5.28E-04 4.82E-04 1.23E-02 1.78E-01 5.52E-06 1.76E-04 3.43E-05 1.57E-04 1.91E-03 4.76E-03 1.49E-02 1.26E-02 1.78E-03 7.46E-05 1.78E-04 1.92E-05 2.77E-01 1.17E-03 1.61E-03 8.55E-04 1.48E-02 3.21E-03 2.05E-02 4.34E-05 2.22E-16 1.23E-02 2.54E-02 1.05E-02 6.68E-03 9.37E-03 2.15E-04 1.83E-02 5.24E-03 1.97E-03 1.04E-02 5.84E-03 1.67E-02 2.53E-03 5.70E-03 4.32E-03 4.48E-03 5.48E-03 3.93E-18 1.71E-02 4.55E-03 9.66E-06 4.96E-02 1.51E-03 1.50E-03 1.72E-03 3.03E-04 1.04E-03 5.50E-03 4.28E-03 2.83E-03 5.99E-03 1.91E-02 1.19E-02 2.06E-03 8.44E-03 7.36E-03 3.24E-18 3.36E-03 0.009223925314 0.000116423626 +C>T GCT G[C>T]T 3.84E-05 5.04E-05 1.13E-02 3.81E-03 1.86E-02 7.44E-02 1.61E-02 5.39E-03 7.58E-04 4.21E-02 4.61E-03 1.07E-02 1.35E-02 3.19E-02 6.96E-02 2.67E-03 1.27E-03 1.05E-02 7.72E-02 6.72E-03 6.60E-05 2.23E-16 6.69E-03 1.09E-01 3.31E-02 8.05E-03 1.76E-03 1.07E-01 2.03E-02 9.82E-03 4.98E-03 7.59E-03 1.02E-04 5.12E-03 1.77E-02 5.70E-03 5.32E-02 3.93E-03 5.17E-04 6.03E-03 3.63E-03 2.32E-03 3.20E-03 8.61E-03 1.27E-02 8.41E-03 8.65E-02 1.86E-03 6.66E-02 1.99E-03 4.00E-03 4.04E-03 1.10E-04 3.08E-04 1.63E-02 5.95E-03 1.02E-03 3.10E-03 2.48E-04 5.29E-03 8.30E-04 6.18E-03 5.03E-03 2.96E-03 8.94E-04 0.180440456121 0.004167105016 +C>T TCA T[C>T]A 1.11E-03 5.36E-01 5.76E-03 3.74E-03 2.03E-02 1.20E-02 2.38E-01 6.61E-03 1.73E-02 2.07E-04 5.04E-03 4.27E-03 3.66E-04 2.73E-03 9.78E-03 5.52E-03 6.93E-03 3.54E-03 2.65E-02 6.36E-03 5.32E-04 1.08E-04 1.14E-02 4.39E-02 8.07E-03 3.60E-03 1.59E-03 1.53E-02 2.40E-03 1.11E-02 3.29E-03 1.88E-02 4.84E-03 6.39E-03 9.80E-02 7.48E-03 2.48E-02 1.47E-02 1.86E-03 2.96E-03 1.07E-02 4.02E-03 6.45E-03 3.88E-03 3.00E-02 1.17E-02 4.82E-03 3.72E-05 1.40E-03 2.40E-03 1.85E-02 7.24E-03 2.14E-04 1.87E-04 1.94E-02 1.70E-03 1.47E-03 5.73E-03 7.45E-18 5.82E-11 2.00E-04 8.14E-03 4.29E-03 1.61E-04 4.07E-05 0.000070752091 0.003823610731 +C>T TCC T[C>T]C 3.73E-05 9.73E-02 1.33E-02 6.99E-03 2.30E-02 1.05E-02 3.31E-01 2.11E-01 1.37E-02 5.65E-03 2.52E-04 7.33E-03 2.76E-03 4.85E-02 1.58E-01 2.64E-03 4.48E-03 1.37E-04 9.56E-03 3.68E-03 9.06E-05 6.04E-04 1.14E-02 2.50E-02 9.19E-03 8.07E-05 1.32E-03 4.36E-02 1.22E-02 6.45E-03 2.53E-03 7.99E-03 4.13E-03 3.61E-18 1.34E-01 2.46E-02 3.87E-02 3.17E-03 2.89E-04 1.26E-02 6.86E-03 2.50E-03 7.23E-03 5.28E-03 2.31E-02 6.47E-03 3.27E-02 5.06E-18 2.25E-03 2.02E-03 1.26E-02 3.71E-02 3.17E-04 5.82E-04 1.04E-01 1.77E-03 1.53E-03 5.77E-03 6.61E-04 4.11E-03 1.84E-04 1.73E-02 1.53E-02 2.80E-04 9.58E-04 0.026909334242 0.002998120759 +C>T TCG T[C>T]G 1.10E-01 4.42E-02 9.89E-04 2.81E-04 1.59E-02 5.20E-02 7.41E-02 5.74E-02 4.64E-05 1.75E-03 4.17E-05 3.26E-03 2.79E-03 4.37E-01 2.94E-07 8.85E-05 1.19E-03 5.32E-03 2.12E-02 3.02E-03 1.77E-04 6.24E-05 1.18E-02 4.32E-03 2.64E-03 3.17E-04 3.77E-05 2.87E-03 2.69E-03 1.41E-02 2.63E-03 4.61E-03 1.74E-03 1.44E-02 1.47E-02 8.41E-03 9.85E-03 3.85E-03 3.00E-04 7.65E-04 3.89E-03 3.43E-03 3.47E-03 4.86E-03 2.12E-03 4.92E-03 3.64E-04 3.07E-18 7.68E-18 1.75E-03 3.70E-03 1.94E-03 4.02E-04 9.34E-04 3.97E-03 6.49E-03 2.19E-03 1.02E-02 1.19E-13 4.81E-03 1.54E-04 4.60E-03 3.34E-03 4.54E-18 1.73E-03 0.000006923779 0.000157958968 +C>T TCT T[C>T]T 2.23E-16 3.00E-01 8.17E-03 7.22E-03 2.10E-02 6.99E-03 1.07E-01 1.02E-01 2.32E-03 5.00E-02 5.27E-03 5.46E-03 2.28E-02 1.28E-01 1.19E-01 6.12E-03 1.42E-03 3.59E-04 1.74E-03 2.21E-02 3.48E-04 8.95E-04 3.75E-03 6.29E-02 5.00E-05 7.31E-05 2.22E-16 2.63E-02 4.71E-03 1.24E-02 2.13E-03 1.19E-02 1.99E-03 4.28E-03 5.25E-02 1.95E-02 6.70E-02 9.04E-03 8.08E-04 8.04E-03 8.33E-03 5.84E-03 6.58E-03 4.23E-03 2.24E-02 1.15E-02 1.51E-02 8.36E-04 3.02E-03 2.95E-03 4.40E-03 8.09E-02 5.85E-06 3.12E-04 8.18E-02 4.24E-02 1.65E-03 7.71E-03 2.36E-04 3.14E-02 8.20E-05 3.72E-02 1.79E-01 2.09E-03 3.91E-03 0.016839668838 0.038650889984 +T>A ATA A[T>A]A 8.00E-04 9.59E-05 5.49E-03 9.42E-03 7.38E-03 9.82E-05 1.94E-03 2.49E-03 1.24E-02 8.89E-05 1.95E-02 1.27E-02 5.07E-05 1.82E-03 4.17E-04 5.17E-03 2.22E-16 6.13E-04 2.04E-03 2.31E-02 1.01E-03 6.26E-05 2.49E-03 7.86E-04 5.11E-04 3.46E-03 6.39E-02 8.28E-18 1.58E-03 2.04E-02 1.52E-03 1.43E-01 1.72E-04 6.19E-04 3.63E-04 7.86E-03 7.13E-04 8.68E-04 1.03E-01 4.89E-03 2.44E-03 2.25E-03 1.99E-03 5.31E-03 6.10E-03 7.46E-03 1.33E-02 1.53E-02 4.78E-03 5.25E-04 2.70E-03 1.38E-01 6.60E-04 1.29E-04 5.36E-03 1.13E-01 1.77E-03 5.89E-03 9.56E-04 4.26E-03 5.05E-06 3.28E-03 2.45E-02 2.00E-03 3.97E-03 0.001562338887 0.111858717410 +T>A ATC A[T>A]C 2.23E-03 8.78E-04 7.21E-03 3.53E-03 6.93E-03 5.46E-04 6.70E-04 4.67E-04 3.42E-03 1.08E-03 2.13E-02 2.82E-03 1.94E-04 3.37E-04 4.41E-04 2.71E-03 6.52E-05 3.72E-04 8.41E-04 7.74E-03 9.97E-04 2.89E-04 8.78E-04 2.55E-04 5.19E-03 5.65E-03 7.01E-03 5.56E-18 2.25E-03 8.89E-03 3.52E-03 1.46E-03 4.78E-04 2.00E-03 3.93E-04 6.07E-03 8.87E-04 1.14E-03 4.44E-02 7.36E-03 1.43E-03 1.66E-03 1.94E-03 2.88E-03 4.44E-03 4.30E-03 4.01E-03 3.78E-03 2.60E-03 4.97E-04 1.80E-03 7.16E-03 2.66E-04 7.78E-05 3.94E-03 1.35E-03 1.18E-03 2.59E-03 3.19E-03 6.18E-04 4.29E-03 6.43E-03 1.46E-03 2.50E-03 2.23E-04 0.000397461148 0.013051252824 +T>A ATG A[T>A]G 1.14E-03 2.55E-05 9.64E-03 1.24E-02 9.12E-03 2.22E-16 5.87E-04 1.56E-03 2.11E-04 3.70E-03 2.28E-02 2.76E-03 2.23E-16 2.34E-05 3.93E-05 3.12E-03 5.90E-04 3.54E-04 5.40E-04 8.81E-03 2.00E-04 6.57E-05 2.60E-03 9.52E-04 3.03E-04 2.48E-04 6.06E-02 3.54E-04 2.00E-03 6.24E-03 6.25E-04 1.23E-03 1.52E-04 2.48E-03 6.38E-04 5.03E-03 7.12E-04 6.96E-04 3.46E-02 1.33E-03 2.53E-03 2.49E-03 1.08E-03 6.94E-03 6.93E-03 3.03E-03 5.01E-03 1.43E-03 1.08E-06 2.13E-03 5.00E-04 7.45E-03 4.65E-04 2.41E-04 5.73E-04 3.68E-02 1.19E-03 2.87E-03 4.23E-03 8.10E-03 5.13E-04 5.80E-03 4.69E-03 2.19E-03 3.52E-04 0.000070829550 0.021107255813 +T>A ATT A[T>A]T 1.83E-04 2.23E-16 6.11E-03 4.21E-03 6.20E-03 1.66E-03 3.71E-03 8.29E-03 5.07E-02 4.11E-02 2.50E-02 1.89E-02 6.66E-03 2.85E-03 3.40E-06 2.82E-03 6.06E-04 1.85E-03 9.54E-03 1.10E-02 1.46E-03 6.33E-04 7.84E-03 6.54E-04 2.56E-02 1.60E-03 2.51E-03 1.61E-04 1.80E-03 1.49E-02 3.07E-03 2.54E-03 1.70E-03 1.96E-03 4.90E-04 4.16E-03 8.44E-04 5.07E-03 3.16E-01 7.37E-03 3.07E-03 2.77E-03 2.72E-03 6.12E-03 1.07E-02 6.96E-02 6.85E-03 4.28E-03 3.08E-02 6.05E-04 2.00E-03 6.76E-02 6.75E-04 3.54E-04 2.41E-03 2.95E-02 1.19E-03 4.63E-03 3.01E-04 3.92E-03 2.90E-02 6.31E-03 8.77E-03 2.80E-03 7.28E-04 0.010652827921 0.070288409275 +T>A CTA C[T>A]A 4.30E-05 2.43E-04 7.94E-03 1.44E-02 3.54E-03 6.66E-05 1.77E-04 1.12E-03 3.47E-03 1.61E-03 1.90E-02 4.79E-03 2.23E-16 7.09E-05 1.84E-04 5.46E-04 2.09E-04 1.55E-04 3.48E-04 3.21E-03 4.34E-04 9.36E-05 5.42E-04 9.60E-05 1.44E-04 6.19E-06 1.28E-01 4.62E-04 1.32E-03 2.63E-02 9.44E-04 3.31E-01 1.40E-04 1.95E-03 2.14E-04 2.06E-02 3.25E-04 7.46E-04 2.37E-02 5.26E-02 1.26E-03 1.57E-03 8.97E-04 4.94E-03 1.09E-03 3.62E-03 1.26E-02 1.36E-03 1.24E-05 6.97E-04 4.20E-03 1.40E-02 8.62E-05 7.41E-05 1.93E-04 6.11E-03 1.22E-03 3.69E-03 7.45E-18 7.39E-05 1.19E-03 6.39E-03 2.48E-03 7.03E-05 6.64E-05 0.000136550096 0.009896320186 +T>A CTC C[T>A]C 3.93E-04 2.44E-04 1.78E-02 1.22E-02 5.19E-03 5.51E-04 2.61E-04 9.58E-04 1.34E-02 8.13E-05 2.92E-02 3.13E-03 2.23E-16 1.06E-04 2.12E-04 5.60E-03 3.42E-04 2.95E-03 2.44E-04 5.70E-03 4.05E-02 2.24E-03 3.06E-03 4.03E-04 6.48E-03 6.88E-04 5.51E-02 4.47E-18 1.87E-03 1.58E-02 1.45E-03 2.81E-03 1.35E-03 1.41E-03 7.77E-04 2.11E-02 6.50E-04 9.92E-04 4.09E-04 3.30E-02 1.46E-03 1.16E-03 2.02E-03 6.44E-03 7.62E-03 3.19E-03 1.72E-03 1.21E-05 3.25E-03 1.04E-03 3.30E-03 5.71E-04 1.02E-04 5.14E-05 5.35E-04 1.49E-03 2.31E-04 4.50E-03 7.32E-04 1.10E-06 9.74E-04 6.59E-03 2.23E-02 1.64E-03 5.14E-04 0.000000000000 0.001136017362 +T>A CTG C[T>A]G 3.24E-04 1.49E-04 1.32E-02 3.25E-02 5.01E-03 1.15E-04 1.12E-04 8.83E-04 9.61E-04 1.20E-03 2.76E-02 5.31E-03 2.23E-16 2.22E-16 3.05E-04 1.41E-03 2.26E-04 3.17E-04 8.20E-05 1.03E-03 1.24E-02 7.17E-04 3.21E-03 2.94E-04 1.23E-04 1.25E-04 1.68E-01 1.32E-04 5.03E-03 6.29E-02 1.14E-03 4.40E-03 8.06E-04 1.98E-03 5.87E-04 1.87E-02 1.41E-03 4.79E-04 1.17E-03 5.82E-02 2.14E-03 1.60E-03 1.78E-03 6.80E-03 3.46E-03 3.12E-03 1.49E-02 2.96E-04 5.82E-04 3.41E-03 4.30E-03 5.82E-05 3.10E-04 2.32E-04 5.16E-04 6.52E-03 1.23E-03 3.30E-03 1.92E-03 1.60E-02 1.59E-03 1.29E-03 8.58E-04 1.39E-04 3.81E-07 0.000125175761 0.000178582568 +T>A CTT C[T>A]T 2.60E-04 2.23E-16 1.27E-02 1.18E-02 4.30E-03 1.79E-04 3.71E-04 1.12E-04 4.87E-02 1.15E-03 4.18E-02 4.44E-03 3.76E-04 2.34E-04 1.62E-04 1.50E-03 5.23E-04 1.38E-03 1.05E-03 6.53E-03 7.23E-02 7.79E-03 2.26E-03 2.18E-04 1.02E-04 2.22E-16 6.03E-02 3.75E-04 4.80E-03 3.66E-02 6.42E-04 5.43E-03 1.03E-03 1.98E-03 6.12E-04 3.10E-02 6.63E-04 1.12E-03 2.68E-04 6.64E-02 1.96E-03 2.06E-03 2.36E-03 8.27E-03 9.28E-03 9.01E-03 7.57E-03 2.03E-04 1.38E-05 1.34E-03 3.60E-03 7.60E-05 3.62E-04 1.06E-04 2.09E-04 3.62E-03 8.56E-04 8.61E-03 6.66E-05 5.23E-03 6.09E-06 1.07E-02 1.30E-03 3.71E-03 1.32E-04 0.000000000000 0.010551155388 +T>A GTA G[T>A]A 8.12E-05 2.23E-16 7.06E-03 9.22E-03 3.67E-03 5.10E-05 4.01E-04 5.26E-04 1.73E-03 2.37E-05 1.28E-02 2.65E-03 3.31E-06 2.22E-16 1.54E-06 8.26E-04 6.70E-06 5.77E-05 5.11E-04 9.40E-04 6.46E-05 9.73E-05 1.60E-03 1.89E-04 5.56E-05 1.17E-03 5.37E-02 6.26E-18 1.57E-03 3.62E-02 7.83E-04 1.10E-01 1.16E-04 3.43E-03 3.29E-04 1.90E-03 8.79E-03 8.10E-04 1.90E-02 7.17E-04 8.80E-04 1.15E-03 8.93E-04 4.96E-03 2.65E-03 2.33E-03 1.20E-02 6.18E-03 1.16E-03 3.00E-04 6.10E-03 1.60E-02 1.30E-04 5.04E-05 7.32E-04 2.04E-02 5.24E-04 4.45E-03 2.33E-03 2.43E-03 4.20E-04 3.33E-03 2.07E-03 2.55E-04 1.09E-04 0.001098638590 0.017239232975 +T>A GTC G[T>A]C 1.29E-04 1.31E-04 7.48E-03 3.60E-03 2.91E-03 4.89E-04 2.24E-04 2.56E-04 2.27E-03 1.12E-04 1.35E-02 2.12E-03 2.23E-16 1.23E-04 3.75E-04 1.81E-03 1.30E-04 2.73E-03 5.89E-04 6.08E-04 3.40E-03 3.47E-04 1.95E-03 7.78E-05 2.56E-03 3.26E-03 1.02E-02 1.40E-04 2.35E-03 5.85E-03 1.15E-03 2.35E-05 1.18E-04 7.89E-04 1.82E-04 2.91E-03 8.22E-03 3.62E-04 2.42E-03 5.56E-03 6.31E-04 7.74E-04 1.12E-03 3.52E-03 3.43E-03 2.29E-03 1.84E-03 1.33E-03 2.36E-03 6.38E-04 1.00E-03 2.28E-04 1.24E-04 9.10E-05 1.05E-03 3.85E-03 3.99E-04 2.70E-03 8.99E-03 1.85E-04 2.37E-03 5.97E-04 6.26E-04 1.98E-03 1.10E-04 0.000065576983 0.001005109264 +T>A GTG G[T>A]G 2.46E-04 6.38E-05 1.16E-02 1.31E-02 4.11E-03 1.95E-04 2.90E-04 6.56E-04 2.22E-16 1.35E-03 1.56E-02 7.88E-04 7.30E-05 2.22E-16 1.19E-04 2.51E-03 4.70E-05 1.20E-04 1.87E-04 5.55E-03 6.95E-04 2.41E-04 1.83E-03 4.86E-04 2.13E-03 7.42E-04 3.75E-02 4.68E-18 2.49E-03 3.82E-02 6.08E-04 1.57E-03 7.17E-05 3.66E-03 9.86E-05 5.77E-03 1.31E-02 8.27E-04 6.53E-03 1.12E-03 1.17E-03 1.08E-03 1.21E-03 6.67E-03 4.41E-03 1.43E-03 7.77E-03 4.50E-03 2.21E-03 1.03E-03 2.40E-03 1.31E-05 1.43E-04 1.10E-04 1.99E-04 4.29E-03 1.29E-03 3.96E-03 2.64E-03 1.25E-02 4.36E-04 2.46E-03 2.04E-02 5.05E-04 3.60E-04 0.000337380913 0.003520166086 +T>A GTT G[T>A]T 2.58E-04 6.28E-05 1.23E-02 5.52E-03 3.22E-03 2.48E-04 3.06E-04 5.59E-05 2.03E-02 8.76E-03 2.81E-02 2.56E-03 4.26E-04 1.08E-04 1.64E-04 9.15E-04 3.58E-04 8.57E-04 8.40E-04 9.66E-04 4.80E-03 1.58E-03 3.46E-03 2.83E-04 4.30E-03 9.37E-04 9.32E-03 5.78E-18 1.31E-03 2.02E-02 8.34E-04 0.00E+00 3.24E-04 1.07E-03 1.91E-04 7.89E-04 6.16E-03 1.76E-03 7.48E-03 2.86E-03 1.12E-03 1.68E-03 1.84E-03 4.09E-03 5.77E-03 4.52E-03 3.25E-03 1.31E-03 3.18E-03 5.10E-04 1.20E-03 3.28E-06 2.31E-04 1.31E-04 7.86E-04 1.46E-04 8.11E-04 3.11E-03 1.85E-03 5.12E-03 5.37E-03 7.93E-03 2.77E-03 1.51E-03 6.37E-04 0.000135756563 0.011658501206 +T>A TTA T[T>A]A 6.72E-03 4.22E-04 6.51E-03 8.88E-03 6.31E-03 4.54E-04 3.56E-04 3.24E-03 1.54E-02 1.67E-02 1.15E-02 2.60E-02 2.04E-03 3.06E-03 1.86E-04 3.75E-03 2.96E-04 2.00E-04 1.09E-03 1.23E-02 1.19E-04 1.19E-03 1.08E-02 4.94E-04 1.20E-02 2.57E-04 7.18E-02 7.77E-18 4.12E-03 2.18E-02 1.13E-03 5.28E-02 1.88E-04 7.64E-04 2.82E-04 6.70E-03 5.12E-04 4.10E-03 2.72E-01 4.30E-03 2.46E-03 2.45E-03 2.44E-03 6.69E-03 7.13E-03 8.06E-02 8.50E-03 7.63E-05 6.96E-03 4.07E-04 4.50E-03 1.56E-01 2.35E-05 4.20E-04 1.69E-03 2.01E-02 1.05E-03 3.10E-03 1.55E-03 3.61E-03 9.42E-03 3.02E-03 1.19E-02 2.09E-03 1.13E-03 0.006569907486 0.060179901809 +T>A TTC T[T>A]C 2.23E-16 1.92E-04 1.05E-02 4.31E-03 4.14E-03 1.14E-04 3.89E-04 2.24E-03 3.42E-02 1.23E-03 1.95E-02 1.85E-03 3.60E-04 6.65E-04 2.02E-04 6.45E-03 2.32E-04 1.73E-03 1.57E-04 4.67E-03 5.70E-03 2.42E-04 2.73E-03 4.75E-04 3.18E-04 7.95E-04 2.36E-02 5.27E-18 3.27E-03 3.41E-03 1.26E-03 4.71E-05 1.25E-03 1.93E-03 2.41E-04 3.75E-03 2.45E-03 2.17E-04 2.22E-16 5.30E-03 1.02E-03 1.13E-03 9.28E-04 3.69E-03 1.03E-02 1.43E-02 2.26E-03 9.38E-04 2.07E-05 2.62E-04 4.30E-03 1.23E-05 7.64E-06 5.70E-05 6.64E-04 2.58E-03 4.69E-04 3.56E-03 1.79E-04 6.95E-05 8.05E-04 9.23E-03 8.98E-04 1.86E-03 2.23E-16 0.000864507132 0.007794895232 +T>A TTG T[T>A]G 2.80E-05 5.01E-05 6.71E-03 9.54E-03 4.79E-03 2.95E-05 2.23E-16 1.70E-03 1.22E-02 5.60E-03 1.29E-02 1.67E-02 6.93E-04 7.06E-05 2.01E-04 2.77E-03 1.88E-04 3.57E-04 1.49E-04 5.18E-03 1.83E-03 2.23E-16 1.79E-03 3.73E-04 1.76E-04 9.85E-05 7.32E-02 1.85E-04 1.99E-03 1.02E-02 2.78E-04 0.00E+00 3.21E-04 9.24E-04 1.90E-04 3.27E-03 1.76E-03 6.60E-04 7.77E-03 1.38E-03 8.72E-04 1.28E-03 8.04E-04 5.46E-03 5.02E-03 9.29E-03 5.33E-03 5.14E-05 5.02E-06 6.54E-04 5.00E-04 4.52E-04 8.32E-06 7.53E-05 7.54E-05 4.03E-03 7.78E-04 1.60E-03 3.29E-04 9.48E-03 6.36E-03 4.40E-03 8.29E-04 4.53E-04 4.24E-05 0.000784032307 0.006733400083 +T>A TTT T[T>A]T 2.25E-03 2.05E-04 1.30E-02 5.62E-03 8.75E-03 4.26E-04 7.98E-04 2.22E-16 2.79E-01 2.73E-02 3.79E-02 1.70E-02 5.29E-03 1.52E-03 6.74E-04 5.25E-03 6.20E-05 1.82E-03 4.75E-04 7.16E-03 1.98E-03 1.31E-03 7.10E-03 6.73E-04 6.71E-03 7.64E-05 3.01E-02 7.32E-18 2.19E-03 1.45E-02 1.31E-03 1.93E-03 5.72E-03 1.20E-03 7.01E-04 8.88E-03 7.11E-04 2.72E-03 4.60E-02 5.41E-03 2.70E-03 1.95E-03 2.50E-03 1.07E-02 2.10E-02 5.35E-02 3.52E-03 8.77E-18 1.39E-02 1.39E-03 3.40E-03 4.35E-03 4.26E-04 3.31E-04 2.95E-03 6.38E-03 1.34E-03 5.08E-03 7.45E-18 2.10E-03 7.44E-04 2.89E-02 1.46E-02 2.99E-03 5.30E-04 0.007059955557 0.062798279518 +T>C ATA A[T>C]A 1.09E-03 6.17E-05 1.65E-02 7.95E-03 4.62E-02 2.21E-03 4.90E-04 1.02E-03 2.88E-04 4.36E-03 9.77E-03 2.03E-02 7.45E-04 9.35E-03 1.14E-03 7.36E-02 1.91E-03 1.26E-02 3.89E-03 2.42E-01 9.65E-05 9.73E-05 2.02E-03 2.59E-03 1.07E-02 1.67E-02 2.50E-02 8.86E-04 6.40E-03 2.07E-02 8.48E-02 5.05E-03 5.49E-04 1.96E-03 6.11E-04 2.04E-02 9.36E-04 1.25E-02 4.62E-03 2.04E-03 5.25E-03 7.33E-02 2.79E-03 1.12E-02 1.87E-02 1.44E-02 1.16E-02 8.88E-06 1.93E-02 1.37E-03 1.85E-02 2.83E-03 1.10E-03 6.13E-04 2.63E-03 2.59E-03 3.75E-03 1.13E-02 2.92E-02 4.35E-03 1.25E-02 2.66E-02 8.05E-02 9.95E-03 1.29E-03 0.000000000000 0.029567020575 +T>C ATC A[T>C]C 3.04E-03 2.15E-05 7.76E-03 7.15E-04 1.34E-02 1.13E-03 2.27E-04 4.56E-04 5.33E-04 3.93E-03 5.01E-03 1.05E-02 3.62E-03 5.10E-04 9.38E-04 4.03E-02 1.42E-04 6.30E-03 1.96E-03 1.29E-02 1.27E-02 2.52E-04 2.09E-03 5.94E-04 4.55E-03 1.00E-02 8.99E-04 1.78E-04 2.18E-03 9.50E-03 2.61E-02 1.85E-03 4.41E-04 2.29E-03 4.58E-04 7.40E-03 7.01E-04 3.75E-03 1.23E-03 8.21E-04 1.69E-03 3.84E-02 1.64E-03 5.64E-03 7.34E-03 5.79E-03 3.51E-03 3.13E-02 3.24E-03 4.18E-04 4.78E-02 5.67E-03 1.89E-04 8.14E-05 9.28E-03 1.93E-02 1.88E-03 3.70E-03 7.75E-03 3.36E-06 6.16E-03 9.66E-03 4.93E-03 2.61E-03 2.77E-04 0.000323133451 0.020410486307 +T>C ATG A[T>C]G 1.06E-04 1.32E-05 1.23E-02 5.00E-03 3.82E-02 4.24E-03 1.87E-04 1.50E-03 1.07E-03 9.19E-03 6.98E-03 1.43E-02 2.14E-03 5.31E-04 3.20E-04 7.05E-02 4.28E-04 1.24E-02 2.40E-04 6.39E-02 3.76E-04 2.23E-16 2.08E-03 2.31E-03 1.86E-02 3.88E-03 7.75E-03 4.70E-04 1.76E-03 1.99E-02 7.85E-02 5.69E-03 4.05E-04 2.75E-03 2.77E-04 8.12E-03 1.09E-03 7.34E-02 1.95E-05 9.20E-04 3.84E-03 1.68E-02 2.17E-03 9.64E-03 1.55E-02 8.04E-03 8.56E-03 5.86E-04 2.72E-02 2.07E-03 3.29E-02 2.09E-03 2.85E-04 2.00E-04 1.13E-03 3.95E-03 2.62E-03 8.25E-03 2.02E-01 4.02E-03 9.55E-03 1.03E-02 6.75E-03 3.52E-03 3.52E-06 0.000011504801 0.005070940432 +T>C ATT A[T>C]T 5.74E-03 1.55E-04 1.73E-02 1.56E-03 3.83E-02 5.02E-04 6.15E-04 2.15E-03 2.65E-03 5.10E-02 1.49E-02 2.90E-02 3.36E-03 1.50E-04 1.19E-03 6.38E-02 9.59E-04 5.97E-03 9.29E-04 1.36E-01 7.79E-03 5.44E-04 4.24E-03 1.74E-03 1.03E-04 2.56E-02 7.55E-04 2.61E-04 2.44E-03 1.45E-02 3.72E-02 2.59E-03 5.95E-04 1.15E-03 5.45E-04 8.47E-03 6.10E-04 9.21E-03 2.34E-03 2.03E-03 5.12E-03 4.80E-02 3.49E-03 1.36E-02 1.94E-02 1.77E-02 2.70E-03 8.80E-03 2.67E-04 1.46E-03 3.06E-02 1.30E-03 1.11E-03 4.82E-04 4.92E-03 1.87E-03 4.92E-03 7.18E-03 7.83E-03 1.37E-02 1.24E-02 1.79E-02 8.16E-03 1.08E-02 3.63E-05 0.009382160052 0.059234079950 +T>C CTA C[T>C]A 2.23E-16 3.02E-04 8.83E-03 5.18E-03 1.33E-02 1.66E-03 4.51E-04 1.53E-03 7.57E-03 1.02E-02 2.39E-03 1.37E-02 1.22E-04 1.32E-03 3.28E-04 4.54E-02 4.74E-05 3.16E-03 7.50E-04 1.07E-02 1.11E-02 6.47E-04 3.86E-04 4.52E-04 1.17E-02 1.15E-02 6.74E-03 6.86E-18 2.27E-03 9.03E-03 5.20E-02 4.90E-03 1.32E-03 1.18E-03 1.27E-03 8.15E-03 5.93E-04 1.51E-02 5.94E-04 1.33E-03 1.50E-03 5.00E-02 1.95E-03 7.34E-03 1.09E-02 1.03E-02 3.54E-03 2.72E-03 1.46E-02 1.11E-03 2.23E-02 1.91E-03 1.45E-04 1.21E-04 8.39E-04 4.18E-03 2.39E-03 1.01E-02 1.14E-02 4.18E-03 3.37E-03 1.20E-02 3.92E-03 2.20E-03 8.79E-04 0.002269665991 0.007184033893 +T>C CTC C[T>C]C 2.50E-03 2.85E-05 1.45E-02 2.36E-03 1.04E-02 1.03E-03 2.59E-04 8.40E-04 3.58E-03 8.89E-05 7.00E-03 1.53E-02 4.12E-05 1.24E-04 7.13E-04 4.97E-02 1.22E-04 5.34E-03 2.15E-03 3.17E-03 1.73E-01 6.46E-03 2.46E-03 8.14E-05 4.83E-03 2.82E-03 1.34E-03 4.47E-18 2.24E-03 1.08E-02 3.12E-02 5.72E-03 2.62E-03 1.84E-03 1.38E-03 9.91E-03 9.27E-04 3.01E-02 4.04E-05 2.02E-03 1.88E-03 2.18E-02 2.32E-03 7.91E-03 9.87E-03 5.25E-03 3.13E-03 1.05E-01 3.20E-03 2.87E-03 8.34E-02 6.28E-03 4.50E-04 1.78E-04 1.77E-02 7.11E-02 1.31E-03 4.07E-03 1.70E-02 4.98E-03 2.64E-03 4.56E-03 9.50E-03 5.73E-03 2.79E-03 0.000003247249 0.006209066076 +T>C CTG C[T>C]G 3.60E-04 2.23E-16 1.01E-02 5.50E-03 2.08E-02 5.32E-03 1.04E-04 7.30E-04 2.17E-03 9.35E-04 1.26E-03 1.54E-02 1.05E-03 2.53E-05 1.31E-04 3.74E-02 2.22E-16 4.47E-03 1.39E-03 9.61E-03 8.73E-02 3.92E-03 1.62E-03 4.98E-04 2.61E-02 1.44E-02 2.03E-03 3.89E-04 4.22E-03 1.34E-02 7.87E-02 5.66E-03 2.49E-03 3.91E-03 1.27E-03 4.46E-03 1.84E-03 4.00E-02 8.11E-04 1.56E-03 1.85E-03 9.95E-03 2.54E-03 7.77E-03 1.05E-02 5.57E-03 3.56E-03 9.25E-03 3.38E-02 1.56E-03 5.04E-02 3.10E-03 3.21E-05 1.08E-04 2.42E-03 2.93E-03 1.23E-03 8.49E-03 1.93E-01 9.49E-04 4.81E-04 8.30E-03 5.93E-03 1.64E-03 5.80E-04 0.003628314755 0.000839951905 +T>C CTT C[T>C]T 4.26E-05 1.86E-04 1.58E-02 2.56E-03 1.49E-02 1.27E-03 1.82E-03 5.73E-03 4.31E-02 3.97E-02 6.46E-03 3.29E-02 2.44E-06 8.15E-04 8.45E-05 4.59E-02 1.12E-04 2.06E-03 1.75E-03 1.55E-02 4.26E-01 1.83E-02 2.56E-03 3.91E-04 6.90E-03 2.17E-02 5.36E-04 4.71E-05 3.63E-03 8.96E-03 5.55E-02 3.90E-03 3.67E-04 1.78E-03 4.10E-03 1.38E-02 1.09E-03 3.07E-03 1.59E-03 3.18E-03 2.16E-03 5.04E-02 4.27E-03 8.59E-03 1.36E-02 7.87E-03 3.24E-03 9.45E-03 7.71E-03 6.02E-04 9.58E-02 5.45E-03 6.77E-05 9.74E-05 1.38E-03 6.64E-03 2.34E-03 5.42E-03 2.69E-02 6.84E-04 2.06E-04 2.43E-02 2.82E-02 1.22E-02 2.10E-03 0.000918581801 0.016913140039 +T>C GTA G[T>C]A 1.05E-03 2.23E-16 9.98E-03 2.90E-03 1.41E-02 2.57E-03 1.01E-04 2.66E-04 2.22E-16 8.00E-04 2.60E-03 9.52E-03 2.20E-03 1.47E-02 8.09E-04 7.11E-02 2.87E-04 1.10E-02 1.29E-02 2.06E-03 1.23E-04 5.95E-05 7.08E-04 9.54E-04 2.76E-03 2.23E-01 7.21E-04 2.18E-04 3.70E-03 1.75E-02 8.35E-02 4.78E-03 4.91E-04 1.08E-03 9.35E-04 4.53E-03 9.14E-03 1.22E-02 1.09E-04 5.65E-04 2.34E-03 3.07E-02 1.70E-03 7.47E-03 6.01E-03 6.06E-03 5.82E-03 7.50E-18 2.70E-02 6.54E-04 2.21E-02 4.17E-04 1.57E-04 6.59E-05 1.38E-03 1.18E-03 2.42E-03 5.61E-03 1.14E-02 2.61E-03 7.30E-04 3.86E-03 2.18E-03 7.10E-04 7.61E-04 0.000000000000 0.021590706956 +T>C GTC G[T>C]C 1.90E-03 2.74E-05 5.64E-03 1.18E-03 7.94E-03 1.11E-03 7.41E-05 2.22E-16 4.23E-04 2.32E-03 2.62E-03 9.78E-03 6.28E-03 5.33E-03 8.60E-04 3.04E-02 1.82E-04 6.54E-03 1.16E-02 1.19E-03 1.49E-02 1.50E-03 2.26E-03 3.71E-04 2.26E-03 6.63E-02 1.24E-03 4.18E-04 3.65E-03 4.05E-03 2.48E-02 1.96E-03 5.87E-04 3.59E-03 5.55E-04 6.57E-03 7.67E-03 7.94E-03 6.46E-04 2.03E-03 1.40E-03 1.82E-02 2.16E-03 6.89E-03 4.58E-03 3.74E-03 3.31E-03 2.19E-02 1.16E-03 5.70E-04 5.76E-02 1.09E-03 1.29E-04 1.51E-04 5.38E-03 2.27E-03 2.05E-03 6.68E-03 4.43E-03 3.17E-03 2.73E-05 2.29E-03 7.80E-04 3.18E-03 6.35E-04 0.000865945066 0.011606134984 +T>C GTG G[T>C]G 1.17E-03 1.07E-04 1.09E-02 2.37E-03 1.50E-02 2.45E-03 7.25E-05 5.29E-04 2.32E-04 2.57E-03 2.81E-03 6.31E-03 2.23E-16 1.38E-03 5.61E-04 4.15E-02 1.95E-04 1.10E-02 5.95E-03 4.28E-03 3.57E-03 1.01E-03 3.98E-03 9.53E-04 4.06E-03 1.17E-01 5.81E-04 4.68E-18 2.67E-03 1.34E-02 7.12E-02 1.23E-03 7.31E-04 2.99E-03 5.01E-04 5.13E-03 9.62E-03 2.07E-01 4.40E-04 1.91E-04 1.84E-03 9.83E-03 1.87E-03 5.74E-03 5.65E-03 3.51E-03 3.21E-03 1.20E-03 1.73E-02 9.07E-04 3.53E-02 3.10E-03 4.67E-05 6.53E-05 3.71E-03 4.56E-03 9.14E-04 2.56E-03 1.21E-01 6.01E-03 1.65E-03 4.72E-03 1.11E-02 9.86E-04 5.00E-04 0.000197907041 0.006462687955 +T>C GTT G[T>C]T 7.13E-05 1.25E-05 1.02E-02 7.55E-04 1.37E-02 9.06E-04 8.11E-04 6.85E-03 7.07E-03 3.18E-01 6.29E-03 9.86E-03 5.29E-03 1.15E-02 2.37E-04 4.63E-02 2.22E-16 1.12E-02 5.86E-03 2.40E-03 5.24E-03 1.47E-03 3.15E-03 2.36E-03 9.28E-04 1.33E-01 8.34E-04 7.99E-04 3.99E-03 1.42E-02 5.52E-02 3.75E-03 8.51E-04 1.55E-03 4.45E-04 4.69E-03 1.29E-02 9.71E-03 2.22E-16 4.21E-04 2.65E-03 4.00E-02 3.05E-03 7.51E-03 7.31E-03 3.89E-03 2.39E-03 5.18E-04 1.11E-02 1.39E-03 6.07E-02 3.19E-03 1.10E-04 1.75E-04 1.17E-03 4.01E-03 3.11E-03 6.99E-03 5.41E-03 1.26E-02 2.58E-03 5.36E-03 2.02E-03 1.19E-03 6.96E-04 0.003662473198 0.054089001127 +T>C TTA T[T>C]A 2.55E-04 2.23E-16 1.52E-02 2.41E-03 1.80E-02 1.48E-03 2.15E-03 6.00E-03 3.02E-02 8.12E-02 2.08E-03 1.40E-02 7.30E-04 8.86E-03 1.13E-04 8.61E-02 2.21E-05 6.27E-03 3.42E-03 1.30E-02 2.09E-03 1.06E-03 1.80E-03 1.24E-03 1.38E-02 8.42E-02 4.63E-03 7.77E-18 1.46E-03 1.45E-02 4.23E-02 1.72E-03 1.31E-03 2.59E-03 5.44E-04 4.59E-03 8.97E-04 1.10E-02 1.40E-03 3.68E-04 2.97E-03 4.77E-02 2.11E-03 5.94E-03 1.02E-02 6.36E-02 6.82E-03 1.37E-04 1.99E-02 1.28E-03 9.30E-03 1.37E-03 6.05E-04 1.73E-04 1.09E-03 4.46E-03 2.77E-03 7.11E-03 4.73E-03 4.88E-03 5.68E-04 4.90E-03 3.31E-03 2.05E-03 2.40E-04 0.000432939443 0.012963549217 +T>C TTC T[T>C]C 3.39E-03 4.35E-05 8.99E-03 5.03E-04 9.71E-03 1.09E-03 5.96E-04 1.73E-03 2.09E-02 1.43E-02 2.64E-03 1.36E-02 5.17E-03 8.10E-05 4.67E-04 4.63E-02 2.49E-05 2.88E-03 5.92E-03 3.67E-03 1.53E-02 1.10E-03 6.18E-03 5.53E-04 1.66E-02 5.48E-02 2.22E-16 1.90E-04 3.00E-03 7.41E-03 3.14E-02 3.49E-03 2.05E-03 1.50E-03 2.86E-04 1.03E-02 1.22E-03 1.25E-02 6.24E-03 8.22E-04 2.28E-03 4.51E-02 2.19E-03 6.44E-03 7.55E-03 2.68E-02 3.03E-03 3.59E-02 1.05E-02 1.10E-03 5.43E-02 1.75E-02 4.04E-04 8.47E-05 2.90E-02 3.93E-03 2.18E-03 5.03E-03 8.19E-03 9.80E-04 1.32E-03 2.67E-02 1.96E-02 2.24E-03 1.09E-03 0.000538464673 0.023324448028 +T>C TTG T[T>C]G 4.16E-04 1.17E-04 6.93E-03 1.74E-03 1.27E-02 2.13E-03 3.19E-04 3.81E-03 1.29E-02 2.28E-02 2.22E-16 9.31E-03 3.63E-04 6.68E-04 1.55E-04 4.00E-02 9.98E-05 4.31E-03 1.32E-03 7.23E-03 2.35E-03 1.21E-03 3.26E-03 1.08E-03 1.20E-02 2.76E-02 1.22E-03 3.02E-04 2.03E-03 4.89E-03 3.03E-02 1.15E-03 1.41E-03 3.79E-04 2.03E-04 4.01E-03 1.69E-03 3.20E-01 1.10E-03 4.38E-04 1.38E-03 1.00E-02 1.92E-03 4.98E-03 6.01E-03 2.05E-02 3.41E-03 2.78E-05 1.91E-02 1.24E-03 2.37E-02 1.58E-03 2.97E-04 6.31E-05 1.02E-03 2.47E-03 1.07E-03 4.72E-03 8.84E-02 4.16E-03 1.85E-03 2.96E-03 2.16E-03 1.35E-03 1.09E-04 0.000022365153 0.003823534542 +T>C TTT T[T>C]T 4.33E-03 3.58E-05 1.39E-02 6.36E-04 1.85E-02 1.74E-03 8.12E-04 2.97E-03 8.81E-02 4.31E-02 4.57E-03 3.84E-02 3.25E-03 2.51E-05 1.06E-04 5.97E-02 5.31E-04 2.92E-03 1.35E-03 8.39E-03 2.10E-02 1.00E-03 3.37E-03 1.47E-03 1.93E-02 4.07E-02 2.22E-16 7.32E-18 3.67E-03 1.70E-02 5.74E-02 1.53E-03 2.06E-03 8.22E-04 4.45E-04 1.21E-02 6.84E-04 9.12E-03 7.08E-03 1.06E-03 2.80E-03 6.14E-02 3.06E-03 9.48E-03 1.02E-02 4.61E-02 2.36E-03 1.84E-03 3.71E-02 5.45E-04 3.65E-02 1.15E-02 5.32E-04 2.08E-04 5.11E-03 2.13E-02 2.00E-03 2.19E-03 1.25E-02 8.87E-04 2.85E-04 1.95E-01 3.20E-02 2.61E-03 1.32E-03 0.009820763708 0.094054377313 +T>G ATA A[T>G]A 1.72E-04 2.38E-04 3.95E-03 1.05E-03 3.86E-03 2.57E-05 4.73E-04 8.44E-05 1.19E-02 3.70E-03 1.64E-03 4.51E-02 1.92E-03 3.47E-05 2.18E-04 2.01E-03 6.14E-05 2.12E-04 4.68E-04 1.12E-02 8.51E-04 1.41E-03 7.21E-04 2.33E-03 1.05E-05 3.92E-04 2.33E-03 8.28E-18 3.21E-03 5.28E-03 2.92E-03 1.14E-03 9.87E-03 4.07E-04 3.90E-05 3.68E-03 3.86E-04 9.79E-04 2.82E-03 3.05E-03 1.09E-03 2.17E-02 1.15E-03 3.88E-03 7.23E-03 7.53E-03 1.20E-03 2.63E-03 2.40E-08 1.17E-04 1.00E-04 1.71E-04 5.17E-04 1.96E-04 7.43E-04 7.23E-04 1.73E-03 4.59E-03 3.87E-05 2.62E-04 1.21E-04 7.06E-03 1.35E-02 1.79E-03 2.50E-02 0.000127137772 0.023838221813 +T>G ATC A[T>G]C 2.07E-04 7.46E-05 2.60E-03 1.59E-04 2.60E-03 2.04E-04 2.47E-04 9.32E-04 1.05E-03 2.66E-03 6.68E-04 6.93E-03 1.24E-03 5.33E-05 4.67E-05 6.64E-04 2.22E-16 2.97E-03 4.15E-04 4.41E-03 7.00E-04 4.48E-03 8.58E-04 1.89E-03 2.13E-05 4.37E-04 5.09E-05 5.43E-18 1.40E-03 0.00E+00 2.53E-03 9.59E-04 1.73E-02 8.17E-04 1.10E-04 2.48E-03 4.29E-04 3.02E-04 4.62E-04 9.66E-04 6.23E-04 1.06E-02 1.07E-03 2.97E-03 7.05E-03 1.64E-03 4.05E-04 4.07E-03 3.26E-05 5.84E-04 8.00E-04 1.72E-03 4.10E-05 8.28E-05 6.07E-04 4.09E-03 5.29E-04 2.90E-03 1.58E-03 9.20E-04 7.99E-18 7.89E-04 7.88E-04 1.56E-03 1.05E-02 0.001270955861 0.003434920439 +T>G ATG A[T>G]G 2.68E-04 2.05E-06 6.30E-03 1.42E-03 7.94E-03 1.07E-04 2.76E-04 1.47E-03 6.04E-04 1.06E-02 4.77E-03 5.33E-03 3.20E-04 5.23E-04 1.79E-04 8.08E-04 8.25E-05 7.09E-04 1.85E-04 4.62E-03 7.19E-04 9.90E-04 1.99E-03 1.77E-03 2.69E-05 1.87E-04 2.95E-03 5.68E-18 2.06E-03 7.14E-03 2.29E-03 6.77E-05 7.68E-03 4.20E-04 4.10E-04 4.02E-03 1.27E-03 4.75E-04 1.97E-04 4.48E-03 9.36E-04 1.68E-02 2.07E-03 7.66E-03 8.06E-03 2.70E-03 6.37E-04 3.49E-02 7.47E-06 9.84E-04 1.60E-03 3.68E-03 3.51E-04 1.26E-04 3.94E-03 2.78E-02 1.19E-03 5.06E-03 1.15E-03 1.45E-01 1.27E-05 1.23E-03 2.71E-03 1.70E-03 2.61E-02 0.000952698782 0.004485500819 +T>G ATT A[T>G]T 1.12E-04 3.76E-06 3.97E-03 2.16E-04 4.83E-03 3.86E-04 3.09E-04 7.33E-04 2.22E-16 1.43E-02 7.40E-04 2.39E-02 9.22E-03 2.22E-16 2.85E-04 1.28E-03 3.20E-04 1.11E-02 3.63E-03 7.96E-03 1.25E-02 6.91E-02 1.84E-03 1.62E-03 5.82E-05 6.95E-05 4.18E-05 7.43E-18 4.71E-03 0.00E+00 5.93E-03 2.56E-04 1.15E-01 8.10E-04 7.94E-04 7.83E-04 6.45E-18 7.58E-04 1.15E-03 2.63E-03 9.84E-04 2.47E-02 2.86E-03 6.42E-03 1.80E-02 7.61E-03 9.11E-04 5.64E-03 1.42E-03 1.66E-04 6.00E-04 8.08E-03 1.99E-04 1.26E-04 1.03E-04 2.13E-03 1.86E-03 2.06E-03 3.40E-04 2.28E-03 5.75E-03 5.97E-03 2.08E-03 3.44E-03 1.64E-02 0.001764975843 0.003178596391 +T>G CTA C[T>G]A 3.55E-05 1.53E-04 4.37E-03 8.70E-04 2.59E-03 4.95E-05 8.42E-05 3.59E-04 3.28E-03 1.48E-03 1.22E-03 2.60E-02 1.55E-04 2.27E-04 2.22E-16 8.93E-04 4.14E-05 4.85E-05 2.06E-04 3.96E-03 3.10E-04 2.05E-03 1.11E-04 7.14E-04 9.63E-04 4.35E-06 4.91E-03 6.85E-18 1.43E-03 0.00E+00 1.42E-03 0.00E+00 1.46E-02 7.81E-04 1.98E-04 1.97E-03 5.81E-05 7.28E-04 1.06E-03 3.71E-03 4.78E-04 2.60E-03 9.83E-04 5.30E-03 3.35E-03 3.47E-03 8.70E-04 2.73E-03 2.34E-04 1.02E-04 0.00E+00 1.37E-04 1.34E-04 1.06E-04 8.94E-04 2.78E-03 8.03E-04 1.49E-03 4.36E-03 1.65E-03 5.82E-03 1.40E-04 5.03E-04 1.01E-03 3.23E-03 0.000897193499 0.003736474707 +T>G CTC C[T>G]C 2.12E-04 1.55E-04 7.04E-03 4.41E-04 4.61E-03 7.84E-04 1.72E-04 7.92E-04 5.58E-03 4.98E-05 1.95E-03 7.41E-03 2.23E-16 1.15E-03 2.22E-16 1.14E-03 2.82E-06 1.21E-03 1.57E-04 1.08E-03 1.04E-03 3.14E-02 1.99E-03 2.09E-03 1.60E-03 5.44E-05 8.80E-04 1.48E-04 8.80E-04 2.89E-03 4.94E-03 3.81E-04 2.21E-02 5.69E-06 2.15E-04 1.43E-03 4.50E-04 9.49E-04 2.22E-16 5.18E-04 5.66E-04 2.38E-03 1.41E-03 7.39E-03 5.67E-03 2.41E-03 7.53E-04 7.26E-03 2.53E-03 2.81E-04 1.80E-03 5.15E-05 9.28E-05 2.67E-05 6.18E-05 2.56E-03 7.75E-04 4.24E-03 1.89E-02 4.66E-04 3.93E-07 8.47E-04 1.04E-03 2.62E-03 4.16E-03 0.002148873221 0.002478170057 +T>G CTG C[T>G]G 1.28E-04 1.21E-04 1.07E-02 3.79E-03 6.13E-03 9.24E-04 2.23E-16 1.29E-03 1.19E-03 2.58E-05 4.70E-03 1.42E-02 5.35E-05 4.79E-04 2.22E-16 5.93E-04 2.22E-16 4.35E-04 2.72E-04 2.24E-03 1.94E-06 1.37E-02 2.93E-03 1.33E-03 2.71E-03 2.01E-05 8.03E-03 6.52E-05 3.04E-03 1.18E-02 5.56E-03 4.03E-04 1.55E-02 3.32E-04 7.85E-05 1.50E-03 1.09E-03 1.07E-03 4.36E-04 6.36E-03 8.87E-04 3.77E-03 1.59E-03 9.83E-03 5.59E-03 3.04E-03 5.68E-03 4.65E-02 3.47E-03 6.49E-04 1.60E-03 3.67E-03 1.04E-04 1.12E-04 3.66E-03 5.93E-03 7.96E-04 2.98E-03 2.21E-02 1.13E-01 4.45E-03 2.19E-03 6.99E-04 2.02E-03 7.11E-03 0.000788671403 0.001120299176 +T>G CTT C[T>G]T 1.71E-04 2.03E-04 7.03E-03 1.20E-03 7.30E-03 1.30E-03 2.65E-05 3.68E-06 3.40E-03 1.56E-04 5.74E-04 5.65E-02 1.30E-03 5.23E-03 1.33E-04 3.44E-04 5.55E-05 9.62E-04 2.49E-03 2.54E-03 5.31E-03 5.50E-01 4.14E-03 2.20E-03 5.11E-03 1.85E-04 1.19E-03 2.47E-04 4.71E-03 8.55E-03 7.80E-03 1.44E-03 1.01E-01 7.67E-04 2.65E-04 9.49E-04 6.76E-04 1.92E-04 6.55E-07 2.71E-03 1.07E-03 4.11E-03 6.88E-03 4.94E-03 1.31E-02 1.05E-02 3.48E-03 6.26E-18 3.84E-04 7.28E-04 2.00E-03 1.07E-04 6.57E-05 9.29E-05 4.71E-04 2.30E-03 8.63E-04 2.72E-03 8.86E-04 1.18E-03 6.78E-18 5.16E-03 4.73E-04 2.12E-02 1.80E-05 0.000000000000 0.001756870383 +T>G GTA G[T>G]A 2.23E-16 2.09E-04 4.42E-03 5.98E-04 2.52E-03 4.35E-05 9.06E-05 3.23E-04 2.48E-03 7.48E-05 1.31E-03 8.30E-03 2.04E-04 4.81E-04 9.57E-05 4.12E-04 8.77E-05 7.79E-05 2.03E-04 9.02E-04 4.95E-04 2.81E-04 8.70E-04 6.36E-04 2.22E-16 2.86E-04 1.59E-03 6.26E-18 1.07E-03 5.55E-03 1.37E-03 0.00E+00 1.16E-03 4.49E-05 1.88E-04 3.04E-04 1.15E-03 5.81E-04 3.65E-04 1.76E-03 1.85E-04 1.18E-02 5.04E-04 3.33E-03 2.49E-03 1.80E-03 1.14E-03 6.11E-02 7.68E-18 4.40E-04 0.00E+00 2.20E-02 7.64E-06 6.61E-05 8.67E-03 2.19E-03 1.13E-03 4.38E-03 1.70E-04 5.67E-03 6.72E-18 1.40E-03 8.07E-03 1.23E-03 2.82E-02 0.000018879250 0.007699623603 +T>G GTC G[T>G]C 2.23E-16 1.33E-04 2.34E-03 2.53E-04 1.71E-03 2.13E-04 1.21E-04 3.21E-04 1.66E-03 2.23E-05 6.56E-04 5.85E-03 8.33E-04 9.42E-04 2.22E-16 2.13E-04 2.22E-16 2.10E-03 5.80E-04 9.01E-04 2.04E-04 6.25E-03 3.70E-05 7.03E-04 6.65E-05 5.33E-04 2.36E-04 8.69E-05 1.53E-03 0.00E+00 1.21E-03 5.08E-05 1.93E-03 9.17E-05 3.53E-04 8.72E-04 7.40E-04 6.37E-04 2.22E-16 5.07E-03 3.13E-04 6.86E-03 9.39E-04 5.80E-03 2.24E-03 9.50E-04 7.05E-05 7.56E-02 1.83E-05 5.20E-04 1.00E-04 1.04E-02 1.35E-04 4.37E-05 9.59E-03 5.30E-03 5.61E-04 1.74E-03 1.53E-03 3.20E-03 9.19E-07 1.71E-04 2.69E-03 1.65E-03 2.88E-02 0.001229435537 0.000800067973 +T>G GTG G[T>G]G 3.48E-04 3.71E-05 1.09E-02 2.43E-03 5.30E-03 2.74E-04 3.25E-04 2.41E-03 6.03E-03 3.80E-03 3.97E-03 3.97E-03 2.23E-16 1.73E-03 1.30E-04 4.96E-04 4.26E-04 7.81E-04 3.47E-04 6.75E-04 8.35E-04 1.48E-03 5.83E-03 5.10E-04 8.70E-05 2.13E-04 4.50E-04 1.57E-04 3.13E-03 8.69E-03 2.35E-03 4.74E-03 3.13E-03 7.70E-04 1.38E-03 2.55E-03 3.01E-03 5.42E-03 5.65E-05 4.04E-03 1.53E-03 9.83E-03 2.16E-03 7.72E-03 4.45E-03 1.20E-03 4.10E-04 2.41E-01 1.03E-04 1.79E-04 1.20E-03 2.72E-02 6.63E-05 1.47E-04 3.51E-02 7.62E-02 1.37E-03 4.73E-03 7.45E-18 2.99E-01 6.72E-18 8.61E-04 2.34E-02 2.29E-03 6.62E-01 0.000212751233 0.001946513805 +T>G GTT G[T>G]T 1.46E-05 2.23E-16 5.83E-03 2.52E-04 2.35E-03 7.87E-04 8.35E-04 1.83E-03 6.75E-03 6.84E-03 1.29E-03 1.94E-02 2.21E-03 5.16E-03 1.54E-04 1.65E-04 2.89E-06 2.25E-03 1.39E-03 2.39E-03 7.24E-03 1.14E-01 2.14E-03 3.41E-04 3.56E-03 2.59E-03 1.96E-05 5.78E-18 2.68E-03 2.77E-03 6.05E-03 2.30E-03 2.06E-02 1.15E-03 1.60E-04 2.81E-03 7.85E-04 4.51E-04 4.17E-04 3.35E-03 4.89E-04 1.71E-02 3.34E-03 5.94E-03 5.48E-03 3.47E-03 9.20E-04 7.46E-02 2.80E-03 4.96E-04 6.00E-04 8.84E-02 1.15E-05 1.02E-04 3.65E-02 2.09E-03 8.64E-04 2.03E-03 1.21E-05 1.44E-03 1.14E-04 2.83E-03 1.69E-02 7.45E-03 4.74E-02 0.001340078646 0.002927905616 +T>G TTA T[T>G]A 2.23E-16 1.67E-05 7.25E-03 3.77E-04 5.22E-03 1.05E-04 1.28E-04 9.55E-04 1.93E-02 2.11E-04 2.22E-16 6.57E-02 2.69E-03 1.13E-02 8.51E-05 1.63E-03 1.84E-04 9.92E-05 2.31E-04 9.78E-03 2.22E-16 1.22E-05 6.96E-04 1.66E-03 2.22E-16 4.65E-04 5.06E-03 1.86E-04 1.23E-04 2.08E-03 1.43E-03 1.19E-03 4.23E-02 4.67E-04 1.18E-04 2.25E-03 2.26E-05 4.68E-04 2.22E-16 4.29E-03 7.88E-04 1.83E-02 1.17E-03 8.39E-03 8.46E-03 4.19E-02 1.15E-03 2.04E-04 7.68E-18 2.85E-04 7.00E-04 2.41E-03 2.50E-04 1.50E-04 3.27E-04 2.55E-03 1.43E-03 1.30E-03 3.24E-05 6.06E-03 9.46E-03 3.22E-03 7.98E-04 1.60E-03 1.61E-03 0.001875698241 0.007106411217 +T>G TTC T[T>G]C 5.51E-05 7.04E-05 6.28E-03 1.74E-04 6.56E-03 2.87E-04 1.16E-04 1.55E-03 1.74E-02 1.15E-04 1.14E-03 8.62E-03 2.23E-16 5.55E-03 6.73E-05 1.13E-03 2.22E-16 1.20E-03 2.94E-04 5.51E-03 1.16E-04 8.75E-03 2.10E-03 2.02E-03 2.22E-16 3.79E-04 7.52E-04 5.27E-18 2.64E-03 5.79E-04 1.72E-03 2.80E-04 3.57E-02 9.93E-05 9.64E-05 2.38E-03 2.24E-04 1.64E-04 2.22E-16 1.94E-03 7.44E-04 1.95E-02 9.03E-04 5.08E-03 1.14E-02 1.55E-02 2.74E-04 8.25E-03 7.68E-18 1.35E-04 1.00E-03 2.25E-05 2.22E-04 1.38E-04 6.55E-04 3.47E-03 1.12E-03 4.36E-03 7.06E-04 5.65E-03 1.00E-06 3.96E-03 1.59E-03 2.33E-03 1.06E-02 0.000737916543 0.006404453857 +T>G TTG T[T>G]G 5.83E-04 9.54E-05 8.05E-03 2.32E-03 6.94E-03 3.24E-04 2.23E-16 1.35E-03 7.64E-03 1.25E-04 3.09E-03 1.09E-02 2.16E-05 2.76E-03 1.01E-04 8.75E-04 3.67E-05 1.14E-04 1.48E-04 5.24E-03 9.20E-04 4.78E-03 1.45E-03 2.07E-03 2.79E-03 1.31E-04 5.57E-03 1.82E-04 3.04E-03 9.43E-03 2.84E-03 2.35E-03 1.40E-02 1.80E-04 8.13E-04 5.35E-03 8.18E-04 9.59E-04 1.52E-03 4.82E-03 9.02E-04 3.02E-02 1.90E-03 7.28E-03 8.66E-03 1.94E-02 2.93E-03 2.28E-02 9.17E-04 7.08E-04 9.00E-04 1.54E-03 3.50E-04 1.12E-04 8.72E-03 2.76E-03 1.48E-03 6.15E-03 7.69E-03 7.95E-02 1.01E-04 5.40E-03 6.74E-03 1.96E-03 2.39E-02 0.000000000000 0.003409999931 +T>G TTT T[T>G]T 2.23E-16 2.23E-16 1.05E-02 5.68E-04 1.35E-02 1.01E-03 8.29E-05 1.77E-03 2.17E-02 1.66E-04 9.96E-04 6.39E-02 1.89E-02 9.09E-02 5.55E-05 2.21E-03 1.89E-05 6.05E-04 5.99E-03 1.58E-02 4.58E-03 1.22E-01 5.16E-03 4.23E-03 1.51E-03 2.22E-16 5.95E-04 7.32E-18 3.96E-03 7.87E-03 9.45E-03 1.40E-04 4.79E-01 9.28E-04 8.89E-03 7.30E-03 6.35E-04 2.25E-03 2.32E-04 3.62E-03 1.81E-03 2.91E-02 5.29E-03 1.09E-02 2.50E-02 8.79E-02 1.74E-03 1.32E-03 9.00E-03 7.24E-04 1.00E-03 3.62E-03 3.20E-07 3.64E-04 1.60E-03 2.91E-03 2.53E-03 7.05E-03 4.99E-04 4.12E-02 2.90E-02 1.19E-01 2.17E-02 1.30E-17 3.18E-02 0.006603134330 0.012708761755
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/F.vcf Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,4089 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 167967 . G A 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 271578 . A AT 0 PASS DP=69;GPV=1;SPV=0.012429;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,5:7,2:10,3 +chr1 636494 . A G 0 PASS DP=113;GPV=1;SPV=0.031633;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:24,9:23,4 +chr1 996625 . A G 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:19,2:3,3 +chr1 1644921 . A G 0 PASS DP=75;GPV=1;SPV=0.045371;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5 +chr1 1864314 . C CAAAA 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,6:2,1 +chr1 1976870 . C CAG 0 PASS DP=47;GPV=1;SPV=0.00016042;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:2,6:7,10 +chr1 2142262 . A C 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr1 2913844 . C G 0 PASS DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:14,6:12,8 +chr1 3181193 . C T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:5,5:13,2 +chr1 4251782 . A ATTTTTTT 0 PASS DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:9,3:5,1 +chr1 5606389 . A AATATATATATATAT 0 PASS DP=27;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:2,6:1,1 +chr1 5732600 . A AG 0 PASS DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,3:3,4 +chr1 7051663 . C CTGCCAGGACAGACTCATCCCTGTT 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3 +chr1 8167511 . GCACA G 0 PASS DP=26;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,3:3,2 +chr1 8233826 . A ATATATTTT 0 PASS DP=16;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:1,1:2,1 +chr1 8501213 . G A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:3,2:14,2 +chr1 8647643 . G A 0 PASS DP=51;GPV=1;SPV=0.048962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,5:8,4:3,1 +chr1 9647481 . A AATTATTATT 0 PASS DP=46;GPV=1;SPV=0.0046297;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:3,5:8,5 +chr1 9916882 . G A 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr1 10583224 . C CT 0 PASS DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr1 10616234 . G A 0 PASS DP=58;GPV=1;SPV=3.9275e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:7,10:12,8 +chr1 11045998 . C T 0 PASS DP=71;GPV=1;SPV=0.00030325;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,6:18,7 +chr1 11771345 . C A 0 PASS DP=58;GPV=1;SPV=3.4859e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:13,9:5,6 +chr1 12381912 . C CTTTCT 0 PASS DP=45;GPV=1;SPV=0.022593;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:1,4:15,4 +chr1 12871201 . C CT 0 PASS DP=61;GPV=1;SPV=0.018007;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,3:9,7 +chr1 12881560 . G A 0 PASS DP=63;GPV=1;SPV=0.013032;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,3:11,3 +chr1 12947985 . CTACAAAAA C 0 PASS DP=76;GPV=1;SPV=0.0010116;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,3:15,7 +chr1 13040570 . C T 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1 +chr1 13168970 . G A 0 PASS DP=26;GPV=1;SPV=0.020006;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,1:1,3 +chr1 13198698 . A G 0 PASS DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,4:4,6 +chr1 13199161 . C A 0 PASS DP=47;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,6:7,3 +chr1 13217209 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr1 13341194 . G A 0 PASS DP=90;GPV=1;SPV=0.0036109;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,6:14,1 +chr1 13926652 . T TA 0 PASS DP=47;GPV=1;SPV=0.00036335;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4 +chr1 14528362 . G A 0 PASS DP=43;GPV=1;SPV=0.057503;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,8:6,3:13,5 +chr1 15194917 . CT C 0 PASS DP=39;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:5,8:1,3 +chr1 15293726 . C A 0 PASS DP=42;GPV=1;SPV=0.024383;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,3:10,4 +chr1 16311503 . A AATAT 0 PASS DP=35;GPV=1;SPV=0.083772;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:9,3:6,4 +chr1 16631115 . G A 0 PASS DP=226;GPV=1;SPV=0.0019297;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:81,24:42,14:39,10 +chr1 16656105 . G A 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,6:2,1 +chr1 16690451 . A T 0 PASS DP=69;GPV=1;SPV=0.0079357;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:8,3:17,9 +chr1 16732665 . A G 0 PASS DP=162;GPV=1;SPV=0.011554;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:37,8:23,2 +chr1 16733940 . C A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr1 16746403 . C A 0 PASS DP=54;GPV=1;SPV=0.018572;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,5:12,7 +chr1 16755063 . G A 0 PASS DP=227;GPV=1;SPV=6.2457e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:53,5:45,8 +chr1 16849895 . G A 0 PASS DP=76;GPV=1;SPV=0.019869;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:17,8:17,6 +chr1 16860384 . C G 0 PASS DP=98;GPV=1;SPV=0.0059855;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:19,3:20,9 +chr1 16896326 . A C 0 PASS DP=113;GPV=1;SPV=0.0087261;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:16,3:24,4 +chr1 17296935 . A G 0 PASS DP=56;GPV=1;SPV=0.0067299;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3 +chr1 17822187 . G A 0 PASS DP=73;GPV=1;SPV=0.0017389;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,2:13,4 +chr1 18611271 . GAGGA G 0 PASS DP=28;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,3:0,1 +chr1 21699192 . AT A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr1 21977914 . GC G 0 PASS DP=47;GPV=1;SPV=0.0028915;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,2:7,9 +chr1 24266066 . T TTGGA 0 PASS DP=39;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:7,4:5,4 +chr1 24407443 . A AT 0 PASS DP=52;GPV=1;SPV=0.0010171;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,10:6,8:6,2 +chr1 26214945 . A C 0 PASS DP=42;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,5:5,3:6,2 +chr1 27824672 . C CT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1 +chr1 28923111 . C T 0 PASS DP=35;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,3:3,1:2,2 +chr1 33493334 . G T 0 PASS DP=58;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,4:9,9 +chr1 33510173 . A T 0 PASS DP=19;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr1 33890232 . C CT 0 PASS DP=43;GPV=1;SPV=0.0081527;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,8:6,4 +chr1 34128594 . G A 0 PASS DP=66;GPV=1;SPV=0.001651;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,4:15,6 +chr1 34959242 . CA C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr1 35207403 . AT A 0 PASS DP=30;GPV=1;SPV=0.0014564;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,8:2,2 +chr1 36806360 . G A 0 PASS DP=62;GPV=1;SPV=2.6735e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,6:11,10 +chr1 37427639 . G GAAGAAAGAAAGAAAGA 0 PASS DP=23;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:2,4:0,0 +chr1 38514430 . C CT 0 PASS DP=31;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:5,3:3,2 +chr1 39021177 . C T 0 PASS DP=32;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,3:0,0:5,3 +chr1 39021181 . C T 0 PASS DP=30;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,2:0,0:5,2 +chr1 39045665 . G A 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,1:7,6 +chr1 41260924 . T C 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,1:10,4 +chr1 42131047 . CAAAA C 0 PASS DP=38;GPV=1;SPV=0.035721;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1 +chr1 43813905 . A G 0 PASS DP=60;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:1,2:0,0:1,2 +chr1 43882975 . A AT 0 PASS DP=44;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,5:11,2 +chr1 44006586 . C CA 0 PASS DP=37;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:12,3:4,1 +chr1 45539020 . G A 0 PASS DP=68;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,6:10,3:16,3 +chr1 46212281 . A AT 0 PASS DP=60;GPV=1;SPV=0.0093079;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:13,4:9,2 +chr1 46242260 . G T 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,7:1,0 +chr1 46700982 . A AGT 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,3:6,3 +chr1 48192907 . A G 0 PASS DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,2:2,4 +chr1 51933945 . G A 0 PASS DP=75;GPV=1;SPV=8.4086e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,8:9,6 +chr1 52783985 . C CGT 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,6:8,3 +chr1 54985221 . G A 0 PASS DP=54;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,4:4,4:0,0 +chr1 55030784 . C A 0 PASS DP=49;GPV=1;SPV=0.079204;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,4:15,2 +chr1 55941187 . G A 0 PASS DP=47;GPV=1;SPV=0.018827;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4 +chr1 56227866 . T TACAC 0 PASS DP=42;GPV=1;SPV=0.017469;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,4:4,4 +chr1 57139968 . T A 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6 +chr1 59805102 . A ATG 0 PASS DP=48;GPV=1;SPV=0.0041795;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,9:4,2 +chr1 59860777 . C CT 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5 +chr1 60301295 . T TTGTGTG 0 PASS DP=29;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,3:2,2 +chr1 63283765 . A AAG 0 PASS DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,3:5,3 +chr1 63817884 . G A 0 PASS DP=69;GPV=1;SPV=1.4829e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,7:12,6 +chr1 64268120 . A AAAAAAAC 0 PASS DP=39;GPV=1;SPV=0.012328;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:4,2:8,3 +chr1 64398280 . AAG A 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2 +chr1 65038938 . T TTGTGTGTGTGTG 0 PASS DP=51;GPV=1;SPV=0.046888;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3 +chr1 65518871 . CTT C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3 +chr1 65731219 . G A 0 PASS DP=60;GPV=1;SPV=0.0045987;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,5:11,1 +chr1 65736482 . T C 0 PASS DP=73;GPV=1;SPV=0.00020766;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,2:8,7 +chr1 68406582 . T A 0 PASS DP=55;GPV=1;SPV=0.040021;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,5:7,2:10,3 +chr1 71928161 . C T 0 PASS DP=30;GPV=1;SPV=0.0079095;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:3,5:2,3 +chr1 74111090 . G A 0 PASS DP=48;GPV=1;SPV=0.0044219;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,3:8,3 +chr1 74448376 . G T 0 PASS DP=45;GPV=1;SPV=0.0047587;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,4:3,2 +chr1 77533509 . CAAAAAA C 0 PASS DP=35;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:6,5:1,2 +chr1 77765735 . C CT 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3 +chr1 77793626 . AT A 0 PASS DP=44;GPV=1;SPV=0.2759;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:13,2:13,1 +chr1 78005365 . CT C 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,4:10,1 +chr1 79202929 . AC A 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,1:9,4 +chr1 80497577 . TA T 0 PASS DP=75;GPV=1;SPV=4.8738e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:10,11:18,5 +chr1 81825657 . C A 0 PASS DP=32;GPV=1;SPV=0.0096686;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,1:1,4 +chr1 82627810 . C T 0 PASS DP=33;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:1,1:3,1 +chr1 83241791 . C CATAT 0 PASS DP=35;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1 +chr1 83248504 . A AT 0 PASS DP=81;GPV=1;SPV=0.0060587;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:18,12:11,2 +chr1 83390671 . A C 0 PASS DP=73;GPV=1;SPV=0.011442;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,6:21,1 +chr1 83716701 . C G 0 PASS DP=81;GPV=1;SPV=2.4826e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:12,9:10,9 +chr1 84418338 . A C 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3 +chr1 86985509 . CAT C 0 PASS DP=37;GPV=1;SPV=0.016414;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:3,4:9,1 +chr1 88567358 . C CA 0 PASS DP=29;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:5,6:2,1 +chr1 91040277 . T C 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,6:2,4 +chr1 95681557 . G T 0 PASS DP=60;GPV=1;SPV=3.7162e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:6,6:7,6 +chr1 96650554 . T TTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,1:9,8 +chr1 98112422 . TAA T 0 PASS DP=16;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:2,4:0,0 +chr1 99227734 . C A 0 PASS DP=65;GPV=1;SPV=0.00036745;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:15,5:12,12 +chr1 99822926 . T A 0 PASS DP=48;GPV=1;SPV=0.017056;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:5,1:5,6 +chr1 100283934 . AG A 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2 +chr1 100394111 . C T 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1 +chr1 101306166 . C CT 0 PASS DP=28;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,8:4,1 +chr1 101529118 . G GAC 0 PASS DP=60;GPV=1;SPV=0.00010085;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,5:8,7 +chr1 102577728 . C T 0 PASS DP=58;GPV=1;SPV=7.6466e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,10:8,4 +chr1 102810163 . C CAA 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr1 103792409 . C T 0 PASS DP=48;GPV=1;SPV=0.0010691;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:7,8:11,5 +chr1 104883863 . C T 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,5:7,8 +chr1 105455897 . AT A 0 PASS DP=67;GPV=1;SPV=6.0123e-06;SS=2;SSC=52;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,8:6,3 +chr1 106599829 . C CTCTCTCTCTA 0 PASS DP=23;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:3,1:3,3 +chr1 108164778 . T TTG 0 PASS DP=41;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5 +chr1 110808911 . T A 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,5:2,1 +chr1 111632921 . C CA 0 PASS DP=38;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:14,3:2,2 +chr1 112383177 . C CA 0 PASS DP=34;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:6,7:3,1 +chr1 112918065 . T G 0 PASS DP=64;GPV=1;SPV=0.00086701;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:7,5:10,10 +chr1 114716126 . C T 0 PASS DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:6,5:16,6 +chr1 115766865 . TGATA T 0 PASS DP=50;GPV=1;SPV=0.0020828;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:3,6:6,4 +chr1 118287981 . T C 0 PASS DP=65;GPV=1;SPV=0.046146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:10,5:6,4:4,1 +chr1 118682202 . ATG A 0 PASS DP=33;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:2,6:5,2 +chr1 121753005 . C G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,3:21,2 +chr1 121773480 . TC T 0 PASS DP=68;GPV=1;SPV=0.038637;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,2:18,2 +chr1 122138561 . T A 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,7:4,2 +chr1 122258262 . G C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 124704670 . G A 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1 +chr1 124798780 . C T 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0 +chr1 124872883 . A T 0 PASS DP=77;GPV=1;SPV=0.010192;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:1,1:26,4 +chr1 124906269 . A T 0 PASS DP=191;GPV=1;SPV=0.0092839;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:76,21:41,6:35,15 +chr1 124921389 . G C 0 PASS DP=21;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,3:2,1:5,2 +chr1 124924096 . G T 0 PASS DP=22;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:6,2:2,1 +chr1 125094391 . T C 0 PASS DP=185;GPV=1;SPV=0.016143;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:83,17:45,7:38,10 +chr1 143217456 . T A 0 PASS DP=14662;GPV=1;SPV=0.048859;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7342:6526,739:1761,246:4765,493 +chr1 143217457 . C A 0 PASS DP=13749;GPV=1;SPV=0.0086744;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6854:6080,740:1673,258:4407,482 +chr1 143241404 . A G 0 PASS DP=194;GPV=1;SPV=0.0089788;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:62,19:58,18:4,1 +chr1 143256117 . A T 0 PASS DP=1640;GPV=1;SPV=0.03986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:847:755,92:200,20:555,72 +chr1 143334185 . C T 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 143388651 . ATAT A 0 PASS DP=112;GPV=1;SPV=0.0036516;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:28,9:10,5 +chr1 143509985 . A G 0 PASS DP=71;GPV=1;SPV=0.0045966;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:4,1:26,7 +chr1 143729574 . A C 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3 +chr1 143739631 . A T 0 PASS DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,1:4,7 +chr1 144104657 . C T 0 PASS DP=189;GPV=1;SPV=0.037546;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:74,13:34,5:40,8 +chr1 144105904 . G A 0 PASS DP=81;GPV=1;SPV=0.03525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,8:15,1 +chr1 144517710 . C T 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,1:6,8 +chr1 144529624 . G A 0 PASS DP=43;GPV=1;SPV=0.018956;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1 +chr1 144549585 . TA T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr1 145227356 . A G 0 PASS DP=57;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,2:0,0 +chr1 145257749 . A G 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,1:13,3 +chr1 145602319 . A AT 0 PASS DP=32;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:3,4:5,8 +chr1 146129855 . T C 0 PASS DP=54;GPV=1;SPV=2.3666e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,2:4,7 +chr1 146626712 . G C 0 PASS DP=68;GPV=1;SPV=0.029248;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:20,3:11,6 +chr1 148067460 . C T 0 PASS DP=38;GPV=1;SPV=0.0018071;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3 +chr1 148106039 . GA G 0 PASS DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1 +chr1 148556832 . C CCCTT 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr1 148869643 . C G 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3 +chr1 148893065 . C CTGTG 0 PASS DP=23;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,6:0,5:0,1 +chr1 148906381 . G C 0 PASS DP=22;GPV=1;SPV=0.020124;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,2:6,5 +chr1 149801515 . GAAGT G 0 PASS DP=37;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,4:9,3 +chr1 150088434 . A AATATATAT 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2 +chr1 150241670 . C CT 0 PASS DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6 +chr1 150312297 . G T 0 PASS DP=66;GPV=1;SPV=0.020244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:13,5:7,2 +chr1 150741885 . G A 0 PASS DP=73;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,4:15,1:8,3 +chr1 153202842 . C T 0 PASS DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:8,5:12,1 +chr1 153877887 . TA T 0 PASS DP=43;GPV=1;SPV=0.024795;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,2:2,2 +chr1 154304368 . GT G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1 +chr1 157035978 . AAT A 0 PASS DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1 +chr1 158444953 . CTCTT C 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2 +chr1 158984028 . G GT 0 PASS DP=39;GPV=1;SPV=0.0036613;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:3,7:4,3 +chr1 159126648 . C CAA 0 PASS DP=37;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:3,7:7,1 +chr1 160335883 . CA C 0 PASS DP=29;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:1,4:2,2 +chr1 160948627 . C CT 0 PASS DP=36;GPV=1;SPV=0.010552;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,6:4,2 +chr1 161142085 . T TAAAA 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2 +chr1 161543514 . T C 0 PASS DP=90;GPV=1;SPV=0.044015;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:16,6:30,3 +chr1 161594229 . G A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr1 161746600 . C CTCTCTCTCTT 0 PASS DP=43;GPV=1;SPV=0.015516;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:5,1:9,4 +chr1 162467966 . CT C 0 PASS DP=27;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,4:1,1 +chr1 162693713 . G C 0 PASS DP=49;GPV=1;SPV=0.00024212;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,5:8,4 +chr1 163328474 . A C 0 PASS DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,6:11,7 +chr1 165020483 . A G 0 PASS DP=35;GPV=1;SPV=0.015907;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4 +chr1 166896635 . C CT 0 PASS DP=30;GPV=1;SPV=0.005305;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr1 167558484 . C CT 0 PASS DP=40;GPV=1;SPV=0.0028678;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,7:3,4 +chr1 168009472 . C T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,1:13,3 +chr1 168440410 . A G 0 PASS DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4 +chr1 170282189 . T TA 0 PASS DP=46;GPV=1;SPV=0.018904;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,6:10,2 +chr1 170933516 . A G 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2 +chr1 171045482 . G T 0 PASS DP=48;GPV=1;SPV=0.00039944;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:3,6:8,10 +chr1 171681188 . C T 0 PASS DP=41;GPV=1;SPV=0.020212;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr1 171694664 . G GAA 0 PASS DP=44;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:13,2:6,2 +chr1 171906127 . AT A 0 PASS DP=50;GPV=1;SPV=0.00011732;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,6:3,3 +chr1 172872876 . T G 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr1 174136273 . T TTA 0 PASS DP=41;GPV=1;SPV=0.027859;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,6:9,3:6,3 +chr1 174607239 . G A 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,5:9,4 +chr1 174946916 . AAAT A 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,2:4,3 +chr1 175417011 . AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG A 0 PASS DP=30;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,1:9,5 +chr1 176042270 . C CA 0 PASS DP=35;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,9:7,6:5,3 +chr1 176406395 . G A 0 PASS DP=55;GPV=1;SPV=0.0010863;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,3:13,6 +chr1 178695925 . TA T 0 PASS DP=61;GPV=1;SPV=0.030658;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2 +chr1 182650202 . G A 0 PASS DP=70;GPV=1;SPV=3.9131e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,3:11,8 +chr1 183166550 . C CAA 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:10,4:2,1 +chr1 185077375 . G C 0 PASS DP=49;GPV=1;SPV=0.005596;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,1:14,6 +chr1 185454785 . C T 0 PASS DP=63;GPV=1;SPV=0.00025863;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,7:15,7 +chr1 185655759 . ATG A 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,2:14,2 +chr1 186628414 . C A 0 PASS DP=75;GPV=1;SPV=6.9826e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:17,7:9,13 +chr1 187637839 . G A 0 PASS DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,3:10,3 +chr1 187827169 . G A 0 PASS DP=28;GPV=1;SPV=0.026923;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,11:1,2:0,9 +chr1 188473743 . A AG 0 PASS DP=36;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,13:5,2:2,11 +chr1 188805737 . C T 0 PASS DP=60;GPV=1;SPV=1.5288e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,11:10,3 +chr1 188848105 . T G 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3 +chr1 191806127 . ATTTG A 0 PASS DP=40;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:1,1:2,1 +chr1 192627568 . TAA T 0 PASS DP=32;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,5:2,3 +chr1 194088881 . T TTATCTATCTATC 0 PASS DP=50;GPV=1;SPV=0.008542;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,6:9,3 +chr1 194698706 . C A 0 PASS DP=55;GPV=1;SPV=0.00026263;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,6:9,2 +chr1 195004485 . A C 0 PASS DP=72;GPV=1;SPV=0.00017262;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,5:11,5 +chr1 196806094 . C T 0 PASS DP=35;GPV=1;SPV=0.0057417;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,6:5,1 +chr1 196904226 . C T 0 PASS DP=66;GPV=1;SPV=0.00011139;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,4:12,8 +chr1 197365625 . TC T 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2 +chr1 199367532 . T G 0 PASS DP=27;GPV=1;SPV=0.0028686;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,6:1,4 +chr1 200443192 . A ATT 0 PASS DP=37;GPV=1;SPV=0.00057632;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:5,5:1,6 +chr1 200942179 . CA C 0 PASS DP=27;GPV=1;SPV=0.016908;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,5:2,1 +chr1 202847186 . A ATTTTT 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2 +chr1 202928823 . CT C 0 PASS DP=32;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:7,5:5,1 +chr1 203330817 . CT C 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,4:9,3 +chr1 204195269 . CACAT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2 +chr1 204195292 . A ACATATACG 0 PASS DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,3:8,2 +chr1 205884539 . CAT C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3 +chr1 207213830 . T C 0 PASS DP=17;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:0,1:1,2 +chr1 207729251 . C CA 0 PASS DP=31;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,6:4,1 +chr1 208845734 . C T 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,1:13,4 +chr1 210798040 . CT C 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr1 212210694 . CT C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr1 212224368 . C CAG 0 PASS DP=58;GPV=1;SPV=0.048094;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:9,2:18,3 +chr1 213812952 . T A 0 PASS DP=58;GPV=1;SPV=0.0056882;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:5,3:15,3 +chr1 214398606 . CCTG C 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3 +chr1 216165808 . G GT 0 PASS DP=42;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:10,9:0,2 +chr1 218395611 . C CT 0 PASS DP=23;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,2:3,4 +chr1 218482328 . A AT 0 PASS DP=31;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:3,2:4,5 +chr1 218788920 . C T 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7 +chr1 222192151 . G A 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:14,5:5,6 +chr1 222488201 . G A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,4:4,2 +chr1 222936762 . TAA T 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2 +chr1 224260699 . CT C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr1 224711794 . C CA 0 PASS DP=33;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:6,3:3,1 +chr1 226114622 . T C 0 PASS DP=31;GPV=1;SPV=0.0053554;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,3:3,5 +chr1 226252318 . A G 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,1:14,3 +chr1 226732102 . C CA 0 PASS DP=25;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,8:3,2 +chr1 226795555 . C CTT 0 PASS DP=22;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,3:1,1 +chr1 226886041 . T A 0 PASS DP=47;GPV=1;SPV=0.0069488;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:4,5:12,1 +chr1 227726185 . T C 0 PASS DP=33;GPV=1;SPV=0.013278;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,8:4,2 +chr1 228903868 . C T 0 PASS DP=65;GPV=1;SPV=6.6453e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:11,8:3,11 +chr1 232424065 . C T 0 PASS DP=55;GPV=1;SPV=0.0058348;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:14,4:7,3 +chr1 232496560 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:8,8:8,2 +chr1 232849287 . CTT C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chr1 234623890 . A G 0 PASS DP=25;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,2:0,0 +chr1 234786202 . C T 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,2:10,2 +chr1 236464427 . T C 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chr1 238605947 . CAAAA C 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr1 238739107 . C A 0 PASS DP=50;GPV=1;SPV=0.0014624;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:12,6:7,5 +chr1 240729885 . C CA 0 PASS DP=33;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:8,2:1,5 +chr1 241235918 . G A 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,3:2,3 +chr1 241327129 . A AG 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr1 241428779 . C CTT 0 PASS DP=16;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr1 242091832 . C T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,1:3,4 +chr1 242207816 . T TTA 0 PASS DP=21;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,6:0,2:1,4 +chr1 242831901 . G A 0 PASS DP=31;GPV=1;SPV=0.23569;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:10,3:5,2 +chr1 245443291 . G A 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2 +chr1 245612107 . A T 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2 +chr1 246232920 . T A 0 PASS DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr1 247428109 . C CTG 0 PASS DP=89;GPV=1;SPV=0.0093304;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,5:11,7 +chr1 248658775 . A C 0 PASS DP=72;GPV=1;SPV=0.023086;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3 +chr1 248942173 . G A 0 PASS DP=70;GPV=1;SPV=0.02714;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:21,7:4,1 +chr10 201585 . T TACACACACACACACACACACACAC 0 PASS DP=28;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:5,4:0,3 +chr10 347891 . G T 0 PASS DP=18;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,2:1,3 +chr10 348012 . C CCCCACACTCA 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:23,2:3,2 +chr10 467539 . T A 0 PASS DP=53;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,2:0,1:0,1 +chr10 2430663 . G A 0 PASS DP=29;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,3:0,1 +chr10 2571322 . T C 0 PASS DP=45;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:2,2:3,1 +chr10 2967703 . C CGT 0 PASS DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:6,5:3,2 +chr10 3323486 . C CA 0 PASS DP=27;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:5,4:1,1 +chr10 5370005 . G GTA 0 PASS DP=47;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,4:4,1:12,3 +chr10 5398439 . A C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2 +chr10 5610441 . A T 0 PASS DP=46;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,2:0,0:2,2 +chr10 5692149 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,9:8,8:4,1 +chr10 5707654 . T TTC 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,4:4,2 +chr10 5998631 . G A 0 PASS DP=58;GPV=1;SPV=0.0022186;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:7,10:12,9 +chr10 6402371 . C CA 0 PASS DP=32;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:8,5:0,1 +chr10 6517588 . CTTTTT C 0 PASS DP=19;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:3,4:1,1 +chr10 6876594 . T TCTCA 0 PASS DP=69;GPV=1;SPV=0.000999;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:0,10:0,6:0,4 +chr10 8216268 . CTCTTTCTTTCTT C 0 PASS DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,2:7,3 +chr10 8696501 . G C 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr10 10743101 . C A 0 PASS DP=77;GPV=1;SPV=0.00016735;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,7:10,3 +chr10 10857649 . G GTA 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr10 12056441 . C T 0 PASS DP=35;GPV=1;SPV=0.00071703;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,7:4,3 +chr10 12226655 . GAT G 0 PASS DP=36;GPV=1;SPV=0.017674;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:5,2:5,3 +chr10 12574497 . T TTTA 0 PASS DP=38;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:4,3:9,1 +chr10 13789769 . ATG A 0 PASS DP=28;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1 +chr10 14417553 . C T 0 PASS DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:13,7:6,6 +chr10 15600251 . TA T 0 PASS DP=57;GPV=1;SPV=2.9244e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,8:10,10 +chr10 15728097 . G A 0 PASS DP=62;GPV=1;SPV=4.9403e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,2:7,8 +chr10 16324158 . A G 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr10 16652392 . C CAA 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:11,4:1,1 +chr10 21770395 . CT C 0 PASS DP=30;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2 +chr10 24369179 . A ATGTG 0 PASS DP=40;GPV=1;SPV=0.0088484;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,4:7,3 +chr10 24436757 . CAA C 0 PASS DP=21;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,3:1,1 +chr10 24456706 . T A 0 PASS DP=40;GPV=1;SPV=0.003276;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2 +chr10 25983935 . G A 0 PASS DP=64;GPV=1;SPV=0.0017823;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:8,3:15,5 +chr10 26721425 . C T 0 PASS DP=38;GPV=1;SPV=0.005667;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,2:4,6 +chr10 27572311 . AT A 0 PASS DP=39;GPV=1;SPV=0.0025759;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,5:6,3 +chr10 29329657 . ATCTC A 0 PASS DP=54;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,6:6,2:11,4 +chr10 29445342 . GAGAGAA G 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr10 34724899 . G A 0 PASS DP=66;GPV=1;SPV=0.0058421;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:19,4:14,8 +chr10 35196895 . G A 0 PASS DP=35;GPV=1;SPV=0.018501;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5 +chr10 37327549 . G A 0 PASS DP=69;GPV=1;SPV=7.0959e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:16,10:9,5 +chr10 38621941 . C T 0 PASS DP=71;GPV=1;SPV=0.016232;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:17,2:14,4 +chr10 38745197 . GATGAAATGAA G 0 PASS DP=61;GPV=1;SPV=0.028648;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,3:7,1 +chr10 38930473 . G A 0 PASS DP=99;GPV=1;SPV=0.018934;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:20,6:25,6 +chr10 38957246 . C T 0 PASS DP=356;GPV=1;SPV=0.047562;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:158,18:95,3:63,15 +chr10 38966360 . C T 0 PASS DP=264;GPV=1;SPV=0.0056063;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:113,23:64,11:49,12 +chr10 38966727 . T C 0 PASS DP=132;GPV=1;SPV=0.033863;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:20,5:34,1 +chr10 39997897 . G T 0 PASS DP=309;GPV=1;SPV=0.0061832;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:123,16:52,4:71,12 +chr10 40000624 . C A 0 PASS DP=231;GPV=1;SPV=0.030441;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:103,20:55,16:48,4 +chr10 40608677 . A T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:2,2:9,3 +chr10 40706691 . G C 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3 +chr10 40864302 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr10 40920571 . T C 0 PASS DP=78;GPV=1;SPV=0.033517;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:11,1:18,5 +chr10 40975414 . C G 0 PASS DP=78;GPV=1;SPV=0.012197;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:23,2:13,5 +chr10 41135564 . T A 0 PASS DP=147;GPV=1;SPV=0.04186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:64,12:57,11:7,1 +chr10 41150961 . G C 0 PASS DP=56;GPV=1;SPV=0.032688;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3 +chr10 41202411 . C A 0 PASS DP=103;GPV=1;SPV=0.0087417;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:9,1:27,6 +chr10 41232580 . T A 0 PASS DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,5:0,2 +chr10 41425591 . A T 0 PASS DP=289;GPV=1;SPV=0.0047975;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:11,3:113,12 +chr10 41552857 . A T 0 PASS DP=57;GPV=1;SPV=0.023472;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2 +chr10 41552862 . T A 0 PASS DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr10 41562381 . T A 0 PASS DP=73;GPV=1;SPV=0.0034912;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,10:12,2 +chr10 41562631 . T A 0 PASS DP=55;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,2:8,7 +chr10 41564142 . G A 0 PASS DP=104;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:19,4:24,2 +chr10 41576755 . C G 0 PASS DP=92;GPV=1;SPV=0.032789;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:17,6:19,2 +chr10 41713561 . C T 0 PASS DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,3:16,6 +chr10 41864307 . A T 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3 +chr10 41912091 . G C 0 PASS DP=145;GPV=1;SPV=0.014084;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:66,17:29,11:37,6 +chr10 42073656 . C G 0 PASS DP=654;GPV=1;SPV=0.012143;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:347:299,40:129,22:170,18 +chr10 42073671 . T A 0 PASS DP=648;GPV=1;SPV=0.013281;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:334:287,47:131,26:156,21 +chr10 42080556 . G T 0 PASS DP=821;GPV=1;SPV=0.04623;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:411:359,52:199,26:160,26 +chr10 42103837 . G A 0 PASS DP=53;GPV=1;SPV=0.011867;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3 +chr10 42130049 . A T 0 PASS DP=353;GPV=1;SPV=0.0077328;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:151,17:105,13:46,4 +chr10 42190895 . GAT G 0 PASS DP=27;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,3:3,1 +chr10 42227104 . C CTCA 0 PASS DP=49;GPV=1;SPV=0.049555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,2:14,7 +chr10 42271021 . C G 0 PASS DP=157;GPV=1;SPV=0.0039034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:26,7:32,9 +chr10 43330621 . TA T 0 PASS DP=31;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,4:5,2 +chr10 43729991 . AAG A 0 PASS DP=39;GPV=1;SPV=0.24625;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:12,2:7,2 +chr10 44338700 . G A 0 PASS DP=48;GPV=1;SPV=2.3557e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,16:5,6:5,10 +chr10 45507811 . G GA 0 PASS DP=41;GPV=1;SPV=0.03378;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1 +chr10 45695659 . C T 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr10 45775775 . G A 0 PASS DP=50;GPV=1;SPV=0.0090384;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,3:6,7 +chr10 46391919 . A G 0 PASS DP=63;GPV=1;SPV=0.053635;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,3:11,2 +chr10 46411570 . C T 0 PASS DP=90;GPV=1;SPV=0.033847;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:12,6:19,4 +chr10 46455528 . C A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2 +chr10 46541273 . GT G 0 PASS DP=86;GPV=1;SPV=0.02442;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:8,1:26,8 +chr10 46541275 . C CAG 0 PASS DP=89;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:8,1:28,8 +chr10 47584258 . G T 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1 +chr10 47606142 . C T 0 PASS DP=57;GPV=1;SPV=0.017732;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,3:12,6 +chr10 47995404 . C T 0 PASS DP=49;GPV=1;SPV=0.016464;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,3:7,3 +chr10 48806215 . G T 0 PASS DP=82;GPV=1;SPV=4.3619e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:7,8:10,11 +chr10 51621007 . G GTATATATATA 0 PASS DP=21;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:1,2:1,4 +chr10 52866670 . C CAAAAAA 0 PASS DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,4:4,1 +chr10 53604670 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr10 54105277 . GATATAT G 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,3:3,6 +chr10 54146887 . TGTGTATAC T 0 PASS DP=40;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,1:8,2 +chr10 54221600 . C CT 0 PASS DP=35;GPV=1;SPV=0.029984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1 +chr10 54503225 . A ATATGTG 0 PASS DP=54;GPV=1;SPV=0.018374;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,10:13,7:6,3 +chr10 54873697 . A T 0 PASS DP=36;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2 +chr10 55253253 . T A 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,4:16,1 +chr10 55781207 . GA G 0 PASS DP=34;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,3:3,2 +chr10 56390120 . A T 0 PASS DP=47;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1 +chr10 56546403 . A T 0 PASS DP=61;GPV=1;SPV=0.0011625;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,3:14,6 +chr10 57379700 . G A 0 PASS DP=55;GPV=1;SPV=0.0004914;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,6:5,3 +chr10 57813753 . G A 0 PASS DP=62;GPV=1;SPV=6.8987e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,7:10,6 +chr10 58038377 . C T 0 PASS DP=64;GPV=1;SPV=0.017938;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:15,2:13,4 +chr10 58136758 . G GTA 0 PASS DP=24;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:1,2:2,3 +chr10 59162436 . G T 0 PASS DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,3:12,5 +chr10 60822450 . A G 0 PASS DP=71;GPV=1;SPV=1.5971e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,3:11,10 +chr10 63556634 . GTT G 0 PASS DP=29;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,4:1,2:0,2 +chr10 63652988 . A T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2 +chr10 63733760 . TAGATCTATATCTAC T 0 PASS DP=41;GPV=1;SPV=3.7518e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,19:3,7:4,12 +chr10 64509039 . T G 0 PASS DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1 +chr10 67057674 . G T 0 PASS DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,2:9,2 +chr10 70248478 . G T 0 PASS DP=20;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:1,1:4,1 +chr10 71642393 . C T 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,1:5,3 +chr10 74302101 . G T 0 PASS DP=20;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2 +chr10 75884245 . T TTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:1,2:5,4 +chr10 76535243 . G A 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,5:10,3 +chr10 77324971 . C CTG 0 PASS DP=33;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:0,2:3,4 +chr10 78266694 . C CA 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,10:2,9:5,1 +chr10 79787227 . T C 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1 +chr10 80061163 . C G 0 PASS DP=34;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:4,1:3,1 +chr10 80158813 . G C 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:9,7:10,4 +chr10 80990997 . CT C 0 PASS DP=44;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:4,2:9,3 +chr10 82170653 . G GGT 0 PASS DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chr10 84174493 . T C 0 PASS DP=34;GPV=1;SPV=0.01205;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3 +chr10 84319447 . T A 0 PASS DP=32;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:4,2:4,2 +chr10 84394385 . A ATGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,5:4,4:2,1 +chr10 88478570 . C A 0 PASS DP=42;GPV=1;SPV=3.9238e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,9:5,2 +chr10 90037498 . G GA 0 PASS DP=27;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,3:2,4 +chr10 90102009 . C CAGAGAGAGAG 0 PASS DP=46;GPV=1;SPV=0.016238;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:11,6:3,1 +chr10 90604983 . GAGAT G 0 PASS DP=56;GPV=1;SPV=0.037837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,5:9,5 +chr10 91153473 . G A 0 PASS DP=72;GPV=1;SPV=0.00034236;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,3:10,7 +chr10 91664097 . G GGGAT 0 PASS DP=49;GPV=1;SPV=0.057396;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:12,3:11,2 +chr10 92675142 . AC A 0 PASS DP=36;GPV=1;SPV=0.01921;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4 +chr10 92983490 . CT C 0 PASS DP=26;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:1,7:4,4 +chr10 93982563 . C CCTCT 0 PASS DP=48;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,5:11,6 +chr10 97282839 . CT C 0 PASS DP=31;GPV=1;SPV=0.0070941;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,8:4,2 +chr10 97819830 . G GT 0 PASS DP=32;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,4:0,1 +chr10 100676628 . C G 0 PASS DP=55;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:11,3:9,2 +chr10 102520212 . CT C 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2 +chr10 102894439 . TAA T 0 PASS DP=58;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,4:10,1:10,3 +chr10 103639625 . A G 0 PASS DP=43;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:4,1:8,3 +chr10 104620423 . T TTG 0 PASS DP=41;GPV=1;SPV=0.066203;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:8,5:3,2 +chr10 104696666 . A T 0 PASS DP=25;GPV=1;SPV=0.20979;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:4,3:2,1 +chr10 105411722 . T G 0 PASS DP=55;GPV=1;SPV=0.00018161;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5 +chr10 106291175 . C T 0 PASS DP=71;GPV=1;SPV=7.0793e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,3:4,7 +chr10 106779547 . A T 0 PASS DP=50;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,6:8,2:4,4 +chr10 107171514 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:1,5:3,2 +chr10 108936941 . CTG C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr10 109850929 . CAA C 0 PASS DP=34;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:4,9:4,1 +chr10 112251080 . G A 0 PASS DP=83;GPV=1;SPV=7.2935e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:9,5:14,11 +chr10 113118664 . G T 0 PASS DP=30;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:1,2:5,1 +chr10 113658881 . C CA 0 PASS DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,1:4,3 +chr10 116267948 . C A 0 PASS DP=64;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1 +chr10 116628774 . C A 0 PASS DP=24;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:5,1:1,1 +chr10 117146974 . ATT A 0 PASS DP=38;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:3,5:6,1 +chr10 118438311 . CT C 0 PASS DP=27;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:4,3:4,1 +chr10 118944739 . A C 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr10 119001107 . ATG A 0 PASS DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,5:6,3 +chr10 119567417 . AT A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr10 119666547 . T TGTGCTCAGCGAGATGCATGAG 0 PASS DP=42;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,3:6,3 +chr10 121167304 . C T 0 PASS DP=68;GPV=1;SPV=9.9495e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3 +chr10 121955444 . AT A 0 PASS DP=39;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,7:2,3:0,4 +chr10 123078525 . CTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr10 124580721 . C CT 0 PASS DP=35;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,4:0,0:4,4 +chr10 124587024 . CTT C 0 PASS DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,2:3,3 +chr10 124949522 . C T 0 PASS DP=36;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:4,1:0,1 +chr10 125486448 . T TAAAAA 0 PASS DP=43;GPV=1;SPV=0.003311;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:3,5:8,4 +chr10 126558020 . G A 0 PASS DP=68;GPV=1;SPV=0.00161;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,3:12,4 +chr10 126651080 . C A 0 PASS DP=54;GPV=1;SPV=5.0681e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,6:7,6 +chr10 129343960 . A ATT 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:10,5:0,3 +chr10 130705325 . G A 0 PASS DP=64;GPV=1;SPV=1.57e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,4:10,9 +chr10 133645068 . G A 0 PASS DP=100;GPV=1;SPV=0.0040096;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,9:14,7:23,2 +chr10 133657809 . A G 0 PASS DP=265;GPV=1;SPV=0.029166;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:66,8:58,7 +chr11 179314 . C T 0 PASS DP=82;GPV=1;SPV=0.014318;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:17,2:10,10 +chr11 350146 . A C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1 +chr11 350151 . C CACA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr11 2178862 . C G 0 PASS DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,6:8,5 +chr11 3257577 . G T 0 PASS DP=31;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1 +chr11 4160122 . C A 0 PASS DP=53;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,4:9,3:6,1 +chr11 4228378 . C T 0 PASS DP=74;GPV=1;SPV=0.038913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:12,1:17,5 +chr11 4276958 . C A 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,1:4,5 +chr11 4335202 . A G 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1 +chr11 6385445 . A AAAGGAAGG 0 PASS DP=34;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:3,2:5,2 +chr11 7282591 . C T 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,5:11,6 +chr11 7407360 . ATTTTTT A 0 PASS DP=34;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:10,2:5,2 +chr11 7889212 . C A 0 PASS DP=59;GPV=1;SPV=0.0030692;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,4:10,5 +chr11 8862322 . CTTTT C 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:3,9:1,3 +chr11 9671357 . TAAATA T 0 PASS DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,1:6,7 +chr11 10901712 . C T 0 PASS DP=18;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:1,1:1,1 +chr11 14781161 . G A 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,6:9,2 +chr11 15298915 . T C 0 PASS DP=24;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,3:0,0:5,3 +chr11 15298919 . T C 0 PASS DP=25;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:0,0:6,3 +chr11 15502822 . G GCA 0 PASS DP=36;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:8,3:4,1 +chr11 16149796 . T C 0 PASS DP=52;GPV=1;SPV=6.7064e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:5,8:11,7 +chr11 17756520 . AACACACAC A 0 PASS DP=35;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,9:3,5:1,4 +chr11 18377215 . G GTTT 0 PASS DP=34;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,6:6,5:2,1 +chr11 19234145 . T TA 0 PASS DP=34;GPV=1;SPV=0.013278;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:9,10:1,2 +chr11 20289136 . C T 0 PASS DP=66;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,4:7,2:12,2 +chr11 20549262 . T C 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2 +chr11 21251540 . C T 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3 +chr11 21697973 . A AATT 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr11 21697974 . T G 0 PASS DP=23;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:1,5:3,1 +chr11 22659898 . G A 0 PASS DP=22;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:1,2:0,0 +chr11 24926388 . TAC T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,1:13,3 +chr11 25300473 . C CTT 0 PASS DP=34;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:3,7:2,1 +chr11 25475491 . A G 0 PASS DP=50;GPV=1;SPV=6.2951e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:4,4:8,6 +chr11 26447206 . C CA 0 PASS DP=27;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:7,4:1,1 +chr11 26726156 . TCTTCCTTC T 0 PASS DP=40;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,8:4,3:2,5 +chr11 28433172 . G T 0 PASS DP=54;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,4:8,2:7,2 +chr11 29820724 . T TA 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,5:4,4 +chr11 30235108 . G C 0 PASS DP=62;GPV=1;SPV=9.1194e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:3,5:14,9 +chr11 30790121 . GA G 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,2:3,2 +chr11 31148210 . T TAA 0 PASS DP=34;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:7,3:7,1 +chr11 31163795 . C T 0 PASS DP=49;GPV=1;SPV=7.0087e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,7:6,5 +chr11 32503846 . G A 0 PASS DP=17;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr11 34424259 . C CAA 0 PASS DP=21;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:3,3:1,1 +chr11 37194539 . CTT C 0 PASS DP=37;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:3,4:5,2 +chr11 37216846 . C G 0 PASS DP=64;GPV=1;SPV=9.263e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,3:8,9 +chr11 40578140 . GGTTTTTTTTTTTT G 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,4:1,3 +chr11 40834919 . C G 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1 +chr11 40851076 . C T 0 PASS DP=65;GPV=1;SPV=4.316e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,5:9,7 +chr11 41083294 . G T 0 PASS DP=49;GPV=1;SPV=0.00014258;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:11,7:4,6 +chr11 41304529 . T G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr11 41938396 . G A 0 PASS DP=51;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:9,3:6,3 +chr11 42125346 . AC A 0 PASS DP=47;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,7:0,1:1,6 +chr11 43810371 . AT A 0 PASS DP=37;GPV=1;SPV=0.012987;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,5:0,2:0,3 +chr11 45923985 . CAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:4,5:0,2 +chr11 45989490 . T TAAA 0 PASS DP=36;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:3,6:4,3 +chr11 46816787 . T A 0 PASS DP=35;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:3,2:2,1 +chr11 49035339 . ATTTTTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3 +chr11 49212688 . C G 0 PASS DP=61;GPV=1;SPV=9.3552e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4 +chr11 49857032 . C T 0 PASS DP=48;GPV=1;SPV=0.00029985;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,5:7,5 +chr11 51289722 . C T 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:6,2:22,2 +chr11 51622370 . G A 0 PASS DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:1,2:16,7 +chr11 51850532 . C G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr11 52142061 . A C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr11 52304615 . G T 0 PASS DP=72;GPV=1;SPV=0.064197;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:2,0:31,4 +chr11 52482834 . A T 0 PASS DP=160;GPV=1;SPV=0.024396;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:30,3:44,7 +chr11 52556895 . T C 0 PASS DP=147;GPV=1;SPV=0.016892;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:9,7:44,7 +chr11 53372519 . T G 0 PASS DP=376;GPV=1;SPV=0.025298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:150,22:81,3:69,19 +chr11 53604369 . G T 0 PASS DP=78;GPV=1;SPV=0.0085098;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:14,5:20,2 +chr11 53628092 . T C 0 PASS DP=83;GPV=1;SPV=0.031193;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:14,10:20,2 +chr11 53698751 . C A 0 PASS DP=45;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr11 54372015 . C G 0 PASS DP=42;GPV=1;SPV=0.036365;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:8,2:13,6 +chr11 54384523 . C G 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1 +chr11 54533839 . T A 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3 +chr11 55775691 . C G 0 PASS DP=51;GPV=1;SPV=0.034379;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,4:8,2 +chr11 56166092 . GA G 0 PASS DP=47;GPV=1;SPV=0.0055032;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,5:5,2 +chr11 60451481 . C T 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1 +chr11 62899037 . C CAAA 0 PASS DP=27;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,3:3,1 +chr11 64236716 . CAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:2,3:4,2 +chr11 64733395 . AACAC A 0 PASS DP=35;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,5:2,1 +chr11 66213902 . G A 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:12,9:15,7 +chr11 68426423 . C CTT 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:13,3:4,1 +chr11 68954772 . A AAAG 0 PASS DP=20;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:1,1:4,3 +chr11 69026145 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.0012058;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,7:2,2 +chr11 70157979 . CA C 0 PASS DP=31;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:9,4:3,1 +chr11 71133346 . A ATGGCTGGCTGGC 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2 +chr11 71658720 . C G 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:15,2:8,3 +chr11 74636665 . C CT 0 PASS DP=53;GPV=1;SPV=0.00052897;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,8:9,4 +chr11 74656744 . G GT 0 PASS DP=49;GPV=1;SPV=0.0033983;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,9:8,7:1,2 +chr11 76236832 . A G 0 PASS DP=50;GPV=1;SPV=0.0034541;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,7:9,4 +chr11 76494720 . TTCC T 0 PASS DP=21;GPV=1;SPV=0.12281;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1 +chr11 83008989 . G C 0 PASS DP=47;GPV=1;SPV=0.0069488;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3 +chr11 83467810 . T TACAC 0 PASS DP=24;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,1:1,3 +chr11 83848124 . CTT C 0 PASS DP=49;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,2:6,5 +chr11 86602116 . G A 0 PASS DP=54;GPV=1;SPV=0.11792;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:12,1:12,2 +chr11 87419191 . C CA 0 PASS DP=55;GPV=1;SPV=0.00039192;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:8,11:6,6 +chr11 88052933 . T TG 0 PASS DP=20;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,2:2,1:1,1 +chr11 88570571 . A T 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:4,2:2,2 +chr11 89749670 . A G 0 PASS DP=58;GPV=1;SPV=0.011696;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,7:12,4 +chr11 89772506 . T C 0 PASS DP=80;GPV=1;SPV=0.019233;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,1:14,8 +chr11 89883593 . G A 0 PASS DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:2,3:15,3 +chr11 89960943 . C T 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr11 90971910 . G C 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,1:3,3 +chr11 92315479 . G A 0 PASS DP=22;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr11 92950475 . TCTCCCTCCCTCCCTTCCTTCCTTCCTTCTTTC T 0 PASS DP=22;GPV=1;SPV=0.23636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:1,0:10,3 +chr11 93243149 . A G 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,4:7,4 +chr11 93420517 . C T 0 PASS DP=58;GPV=1;SPV=0.0051564;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:3,2:11,4 +chr11 94810793 . C CA 0 PASS DP=42;GPV=1;SPV=0.0010673;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4 +chr11 95403130 . AT A 0 PASS DP=23;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1 +chr11 95654621 . G A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2 +chr11 98275560 . T C 0 PASS DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,1:7,4 +chr11 98977220 . C T 0 PASS DP=33;GPV=1;SPV=0.026047;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,2:2,4 +chr11 99080980 . GT G 0 PASS DP=43;GPV=1;SPV=0.044901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1 +chr11 99151211 . T A 0 PASS DP=51;GPV=1;SPV=0.061499;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:10,4:17,2 +chr11 99724327 . A T 0 PASS DP=52;GPV=1;SPV=0.0035931;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,3:10,4 +chr11 100194603 . GA G 0 PASS DP=46;GPV=1;SPV=0.00078184;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:10,10:6,2 +chr11 101263877 . GTATA G 0 PASS DP=46;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:15,3:2,3 +chr11 101263883 . A G 0 PASS DP=43;GPV=1;SPV=0.034629;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:13,2:2,2 +chr11 104194686 . G A 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,4:2,4 +chr11 105161856 . CA C 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5 +chr11 107523052 . A C 0 PASS DP=47;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:1,1:4,1 +chr11 107572651 . A AT 0 PASS DP=63;GPV=1;SPV=0.0060836;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:17,4:8,3 +chr11 109323949 . T C 0 PASS DP=38;GPV=1;SPV=0.00034172;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:5,9:3,5 +chr11 109757896 . TTCTCTCTCTCTCTCTC T 0 PASS DP=28;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,1:4,3 +chr11 111005139 . A ATG 0 PASS DP=37;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,5:3,1 +chr11 111177973 . CTT C 0 PASS DP=31;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,5:4,4:5,1 +chr11 111768842 . C CGTGTGT 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:5,2:0,4 +chr11 112108914 . CA C 0 PASS DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:15,3:3,2 +chr11 114468134 . A T 0 PASS DP=44;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,1:1,1 +chr11 115169206 . A ATTTTT 0 PASS DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,3:3,2 +chr11 116818336 . TA T 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chr11 117514578 . T C 0 PASS DP=42;GPV=1;SPV=0.032696;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,1:5,6 +chr11 118419127 . G T 0 PASS DP=58;GPV=1;SPV=3.4113e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,4:8,8 +chr11 118852964 . A AT 0 PASS DP=73;GPV=1;SPV=0.019318;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:13,3:14,2 +chr11 119022957 . G GT 0 PASS DP=24;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,3:4,1 +chr11 119763937 . TTTTTC T 0 PASS DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2 +chr11 123102279 . G GTT 0 PASS DP=31;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1 +chr11 123565202 . C CT 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:10,8:1,1 +chr11 126863356 . A AGTGTGTGTTTGAGTGCGT 0 PASS DP=53;GPV=1;SPV=0.10123;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:13,2:13,2 +chr11 127364704 . C T 0 PASS DP=68;GPV=1;SPV=0.026693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,2:13,3 +chr11 127553387 . C CAAAA 0 PASS DP=46;GPV=1;SPV=0.048514;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:11,6:3,1 +chr11 129585183 . C CT 0 PASS DP=43;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:7,4:6,2 +chr11 129585356 . G GT 0 PASS DP=56;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,8:5,7:10,1 +chr11 129688629 . CAAA C 0 PASS DP=50;GPV=1;SPV=0.052323;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:15,3:6,6 +chr11 130037592 . A G 0 PASS DP=44;GPV=1;SPV=0.024807;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,2:7,7 +chr11 130596877 . C CGGATGGAT 0 PASS DP=41;GPV=1;SPV=0.02564;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:5,6:6,2 +chr11 131137267 . C CACACATACACACAT 0 PASS DP=58;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,8:12,4:5,4 +chr11 131265696 . A ATCT 0 PASS DP=23;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,2:3,3 +chr11 131325631 . C CTG 0 PASS DP=68;GPV=1;SPV=0.00011829;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,12:8,8:9,4 +chr11 131578609 . G A 0 PASS DP=81;GPV=1;SPV=3.9881e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:6,8:14,7 +chr11 132161395 . T C 0 PASS DP=30;GPV=1;SPV=0.010538;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,4:4,6 +chr11 133437271 . C T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:5,5:14,3 +chr11 135047060 . C T 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,8:6,1 +chr12 544240 . T G 0 PASS DP=46;GPV=1;SPV=0.11667;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:17,1:3,2 +chr12 1122125 . G C 0 PASS DP=22;GPV=1;SPV=0.26316;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,2:5,1:3,1 +chr12 1522170 . A AAAAAAAATAC 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1 +chr12 1522184 . C A 0 PASS DP=28;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,5:6,1 +chr12 3496214 . A ATATT 0 PASS DP=27;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,6:1,1 +chr12 3919773 . GTTTT G 0 PASS DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1 +chr12 4512508 . C T 0 PASS DP=83;GPV=1;SPV=0.030096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:15,3:14,8 +chr12 6820855 . TGAGA T 0 PASS DP=35;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,5:1,1:0,4 +chr12 8215041 . C T 0 PASS DP=73;GPV=1;SPV=0.01931;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,2:16,6 +chr12 8455116 . G GATTTT 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:9,5:3,1 +chr12 9216233 . G T 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:11,3:12,7 +chr12 9284109 . G C 0 PASS DP=42;GPV=1;SPV=0.034629;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr12 10239540 . T C 0 PASS DP=28;GPV=1;SPV=0.013043;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:1,1:7,5 +chr12 10526141 . CACATATATATATATATATATATATATATATATATATATATATATATATATA C 0 PASS DP=27;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,6:2,4:0,2 +chr12 11160485 . T G 0 PASS DP=45;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,5:5,1:3,4 +chr12 11524456 . CTTAG C 0 PASS DP=60;GPV=1;SPV=6.1809e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:7,8:11,4 +chr12 12909937 . T TAA 0 PASS DP=29;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:4,4:7,1 +chr12 13698823 . C T 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,5:7,4 +chr12 13880506 . T C 0 PASS DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4 +chr12 15143335 . T TA 0 PASS DP=54;GPV=1;SPV=0.0084034;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,4:5,2:3,2 +chr12 15166540 . GGTA G 0 PASS DP=67;GPV=1;SPV=0.10731;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,2:18,2 +chr12 15610657 . T TA 0 PASS DP=55;GPV=1;SPV=0.025398;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:12,5:13,1 +chr12 16235270 . ATG A 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr12 17722701 . GA G 0 PASS DP=43;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,4:3,2:9,2 +chr12 18255252 . T C 0 PASS DP=46;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:10,1:9,3 +chr12 18516261 . G GTT 0 PASS DP=48;GPV=1;SPV=3.7614e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:4,6:3,7 +chr12 18524479 . T A 0 PASS DP=72;GPV=1;SPV=6.7124e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,6:8,9 +chr12 19439669 . A G 0 PASS DP=49;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,2:3,1:4,1 +chr12 21181585 . C A 0 PASS DP=62;GPV=1;SPV=7.8463e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,5:8,5 +chr12 21419847 . T G 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,2:7,9 +chr12 23379875 . CA C 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:2,4:0,1 +chr12 23726118 . CGAGA C 0 PASS DP=28;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:8,3:4,1 +chr12 23907746 . CAA C 0 PASS DP=44;GPV=1;SPV=0.069923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:7,5:9,3 +chr12 28183993 . T C 0 PASS DP=50;GPV=1;SPV=0.00019854;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,5:2,4 +chr12 29299213 . CA C 0 PASS DP=26;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1 +chr12 30362495 . ATATATATATGTATATATATATATATATATATG A 0 PASS DP=18;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,2:0,0 +chr12 31048468 . C T 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:9,2:21,2 +chr12 31108896 . T C 0 PASS DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1 +chr12 32676648 . G A 0 PASS DP=62;GPV=1;SPV=0.00010246;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4 +chr12 32742129 . C G 0 PASS DP=52;GPV=1;SPV=0.0066191;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,5:12,8 +chr12 33459924 . C G 0 PASS DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,2:12,4 +chr12 33962526 . A G 0 PASS DP=71;GPV=1;SPV=0.00051786;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:16,3:8,6 +chr12 34349437 . G GT 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr12 34796338 . C T 0 PASS DP=38;GPV=1;SPV=0.0054096;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1 +chr12 34907117 . G T 0 PASS DP=376;GPV=1;SPV=0.0066075;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:156,23:75,19:81,4 +chr12 34916097 . T C 0 PASS DP=138;GPV=1;SPV=0.031211;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:28,1:34,6 +chr12 35037606 . A C 0 PASS DP=137;GPV=1;SPV=0.033931;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:18,2:28,4 +chr12 35208597 . C G 0 PASS DP=422;GPV=1;SPV=0.022837;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:169,32:74,16:95,16 +chr12 35302590 . T C 0 PASS DP=202;GPV=1;SPV=0.024674;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:33,7:42,10 +chr12 36508012 . G A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr12 36854572 . G C 0 PASS DP=234;GPV=1;SPV=0.027728;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:103,14:94,12:9,2 +chr12 36965324 . G C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,1:7,1 +chr12 37433992 . G GTT 0 PASS DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1 +chr12 37948223 . C A 0 PASS DP=52;GPV=1;SPV=0.18371;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:16,1:11,2 +chr12 46415122 . C CT 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,4:2,2 +chr12 46716673 . A C 0 PASS DP=53;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,1:0,1 +chr12 48078370 . CAT C 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr12 50172552 . A ATT 0 PASS DP=32;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:11,3:2,1 +chr12 51199139 . GATGGAACCAAGTGGTCAAGGCCCCGCAGAGGCTA G 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3 +chr12 53788018 . G GTA 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,8:2,2 +chr12 54026966 . G T 0 PASS DP=65;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,5:9,4:9,1 +chr12 54412066 . G A 0 PASS DP=54;GPV=1;SPV=0.025527;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,2:13,3 +chr12 56691319 . CA C 0 PASS DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr12 56876294 . C CTT 0 PASS DP=20;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,3:2,2 +chr12 57658719 . CAA C 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:1,3:0,1 +chr12 58023731 . A G 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1 +chr12 58261437 . C T 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:12,6:9,6 +chr12 61299907 . A T 0 PASS DP=47;GPV=1;SPV=0.13128;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,2:11,3 +chr12 61518665 . A AAAG 0 PASS DP=32;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:7,6:2,3 +chr12 62059139 . A ATGTGTGTGTG 0 PASS DP=49;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,6:9,1 +chr12 64288489 . C T 0 PASS DP=37;GPV=1;SPV=0.0070131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:10,7:1,3 +chr12 64328700 . AAAAAAAATATATATATATAT A 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,5:2,2 +chr12 66000736 . G A 0 PASS DP=38;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:2,2:8,2 +chr12 66815848 . CTT C 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,3:14,1 +chr12 67634086 . A T 0 PASS DP=23;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:2,2:0,3 +chr12 68683283 . CA C 0 PASS DP=45;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:5,7:1,2 +chr12 69200310 . ATAAGAAAGAGATAAGAGATAAGAGG A 0 PASS DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,3:9,4 +chr12 69491505 . AT A 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:7,5:3,2 +chr12 70103509 . CA C 0 PASS DP=52;GPV=1;SPV=0.0016986;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3 +chr12 72373657 . G T 0 PASS DP=68;GPV=1;SPV=7.1266e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5 +chr12 73319208 . C CT 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2 +chr12 75435052 . G GTT 0 PASS DP=23;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2 +chr12 76122077 . TATATA T 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:8,1:2,3 +chr12 76122145 . TA T 0 PASS DP=37;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:14,1:3,3 +chr12 76122149 . AT A 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,1:2,3 +chr12 77090322 . TTCCTTCCTTCCC T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4 +chr12 79486998 . CT C 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,2:1,3 +chr12 79563504 . G C 0 PASS DP=55;GPV=1;SPV=3.9623e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,9:6,3 +chr12 79890901 . C A 0 PASS DP=19;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,1:3,2 +chr12 80355229 . C T 0 PASS DP=21;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,3:5,2:0,1 +chr12 80504030 . T C 0 PASS DP=46;GPV=1;SPV=0.004138;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,3:9,3 +chr12 81922880 . A AT 0 PASS DP=26;GPV=1;SPV=0.034479;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr12 83409601 . A G 0 PASS DP=28;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:4,2:2,1 +chr12 84275060 . T TATATATAAAATATATTTTATATATATATA 0 PASS DP=32;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:5,3:6,1 +chr12 85464656 . TACAC T 0 PASS DP=35;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:8,1:0,4 +chr12 85488282 . T C 0 PASS DP=55;GPV=1;SPV=0.002853;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,5:13,7 +chr12 86376844 . CAGAG C 0 PASS DP=44;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:6,5:3,1 +chr12 86502767 . ATG A 0 PASS DP=25;GPV=1;SPV=0.45333;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:15,2:4,1:11,1 +chr12 88745578 . G A 0 PASS DP=35;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,5:1,1 +chr12 89677954 . TTATA T 0 PASS DP=39;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:6,7:4,2 +chr12 89862508 . T G 0 PASS DP=61;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,4:6,2:8,2 +chr12 90181091 . T A 0 PASS DP=18;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:2,2:2,1 +chr12 91180314 . A G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2 +chr12 92079801 . A C 0 PASS DP=47;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:1,1:3,1 +chr12 92537344 . T A 0 PASS DP=49;GPV=1;SPV=0.02229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,2:10,3 +chr12 92632819 . T G 0 PASS DP=73;GPV=1;SPV=3.2072e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:8,9:12,11 +chr12 92998044 . G GAC 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,7:6,2 +chr12 94014289 . C CT 0 PASS DP=17;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,1:2,3 +chr12 95055952 . C CA 0 PASS DP=27;GPV=1;SPV=0.023452;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr12 95347547 . C CT 0 PASS DP=23;GPV=1;SPV=0.19298;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,3:4,1:5,2 +chr12 95424716 . C CT 0 PASS DP=38;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,4:5,5 +chr12 95641273 . A T 0 PASS DP=53;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,2:11,3 +chr12 96561704 . TACACACAC T 0 PASS DP=35;GPV=1;SPV=0.0093665;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,4:4,3 +chr12 96591717 . G A 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,4:14,7 +chr12 96868430 . C CT 0 PASS DP=43;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:6,8:5,2 +chr12 97614646 . G T 0 PASS DP=38;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,1:7,3 +chr12 98037742 . G GGGAA 0 PASS DP=53;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,11:8,6:2,5 +chr12 99151541 . A T 0 PASS DP=45;GPV=1;SPV=0.001665;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,6:7,4 +chr12 99322275 . G A 0 PASS DP=56;GPV=1;SPV=0.011127;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,1:8,4 +chr12 99693781 . CT C 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,3:11,2 +chr12 102337565 . G A 0 PASS DP=68;GPV=1;SPV=0.00056917;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:16,4:7,5 +chr12 105088569 . A AAACAACAACAAC 0 PASS DP=37;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,12:5,6:1,6 +chr12 106200353 . T C 0 PASS DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr12 107124459 . C CA 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:14,4:0,0 +chr12 107987959 . T TACACACACACACAC 0 PASS DP=29;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,10:3,6:2,4 +chr12 110311733 . A T 0 PASS DP=47;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,3:0,1:0,2 +chr12 113061450 . G A 0 PASS DP=57;GPV=1;SPV=0.00065454;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4 +chr12 114219607 . CA C 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,4:3,4 +chr12 114556107 . C A 0 PASS DP=72;GPV=1;SPV=5.048e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,5:14,9 +chr12 114617380 . G GTT 0 PASS DP=29;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:10,3:1,2 +chr12 114698158 . T C 0 PASS DP=64;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,6:6,1:9,5 +chr12 114783555 . TA T 0 PASS DP=45;GPV=1;SPV=0.00070128;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,3:4,4 +chr12 115353202 . TC T 0 PASS DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,8:10,5 +chr12 115441818 . CTCTATA C 0 PASS DP=27;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:1,2:8,2 +chr12 115627826 . TAA T 0 PASS DP=34;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:7,6:3,4 +chr12 116356029 . C CAAAAA 0 PASS DP=26;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,4:4,1 +chr12 116800812 . T TTAAAATAAAA 0 PASS DP=40;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:5,3:10,1 +chr12 117135743 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,5:2,2 +chr12 117283855 . C CAAA 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,3:2,1 +chr12 117632218 . CTTTT C 0 PASS DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:2,2:6,2 +chr12 117734745 . C CATGGATGGATGGATGGATGG 0 PASS DP=42;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3 +chr12 117833965 . C CA 0 PASS DP=38;GPV=1;SPV=0.0054096;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,4:5,3 +chr12 118345748 . G A 0 PASS DP=43;GPV=1;SPV=0.00077493;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,4:6,7 +chr12 118701939 . C CA 0 PASS DP=46;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,9:9,6:3,3 +chr12 118938845 . C A 0 PASS DP=60;GPV=1;SPV=3.0928e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:6,8:7,9 +chr12 119731475 . CA C 0 PASS DP=29;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,6:3,2 +chr12 120201481 . C CT 0 PASS DP=30;GPV=1;SPV=0.0016572;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:3,3:0,4 +chr12 121530227 . C CA 0 PASS DP=28;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:9,5:2,1 +chr12 122124584 . C T 0 PASS DP=40;GPV=1;SPV=0.0019379;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,8:3,2 +chr12 122458532 . A ATTTAAT 0 PASS DP=48;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,5:7,3 +chr12 123273990 . C T 0 PASS DP=53;GPV=1;SPV=0.00041286;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,8:9,5 +chr12 123733313 . CA C 0 PASS DP=45;GPV=1;SPV=0.0014958;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,10:4,2 +chr12 125696500 . A T 0 PASS DP=76;GPV=1;SPV=0.00083898;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:12,9:6,3:6,6 +chr12 125708010 . C T 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,11:11,6 +chr12 126612632 . A G 0 PASS DP=33;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:3,2:6,2 +chr12 127036284 . C T 0 PASS DP=54;GPV=1;SPV=0.0001362;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:8,5:8,6 +chr12 127136130 . G C 0 PASS DP=66;GPV=1;SPV=8.543e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,9:8,7 +chr12 127592713 . G C 0 PASS DP=69;GPV=1;SPV=6.605e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,7:7,8 +chr12 128462101 . GT G 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,1:18,3 +chr12 129297613 . C T 0 PASS DP=53;GPV=1;SPV=0.0076814;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,3:13,4 +chr12 129588746 . TTC T 0 PASS DP=42;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,3:1,2:2,1 +chr12 130532162 . T A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,3:6,7 +chr12 131278535 . C T 0 PASS DP=52;GPV=1;SPV=0.0044741;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr12 132054452 . C A 0 PASS DP=54;GPV=1;SPV=0.00018612;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,7:10,6 +chr12 132380926 . G A 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,3:8,3 +chr12 132692796 . G C 0 PASS DP=35;GPV=1;SPV=0.0074932;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,4:3,3 +chr12 132895660 . A G 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,2:4,4 +chr12 132965438 . CT C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr13 18178573 . A G 0 PASS DP=326;GPV=1;SPV=0.027138;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:140,19:67,12:73,7 +chr13 18194779 . G A 0 PASS DP=71;GPV=1;SPV=0.01173;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,4:12,4 +chr13 18336400 . C T 0 PASS DP=72;GPV=1;SPV=0.01598;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,2:8,6 +chr13 18747015 . C T 0 PASS DP=61;GPV=1;SPV=0.023954;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,4:16,1 +chr13 19779877 . C T 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:16,5:7,2 +chr13 20851711 . CA C 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,4:3,1 +chr13 21884018 . T G 0 PASS DP=41;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,1:11,3 +chr13 22402137 . C CT 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:0,4:6,4 +chr13 24421478 . G C 0 PASS DP=104;GPV=1;SPV=0.035001;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:30,8:15,1 +chr13 25159298 . G T 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,3:12,1 +chr13 25159308 . A AAT 0 PASS DP=51;GPV=1;SPV=0.025437;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:7,4:9,2 +chr13 25310519 . C CT 0 PASS DP=26;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,4:3,2 +chr13 25740308 . CA C 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:6,9:2,2 +chr13 26723699 . G A 0 PASS DP=38;GPV=1;SPV=0.0093762;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,3:9,5 +chr13 26805525 . T C 0 PASS DP=36;GPV=1;SPV=0.00058707;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,6:6,5 +chr13 26897028 . C T 0 PASS DP=76;GPV=1;SPV=1.4106e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,11:7,7 +chr13 28646352 . C CA 0 PASS DP=50;GPV=1;SPV=0.0031516;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:6,4:4,4 +chr13 28737290 . A AAGT 0 PASS DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,1:6,3 +chr13 29168888 . C CTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,4:4,2 +chr13 29181857 . C T 0 PASS DP=50;GPV=1;SPV=0.00033748;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:4,5:13,8 +chr13 31038665 . T C 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr13 34362939 . AAAAG A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr13 34368386 . G C 0 PASS DP=53;GPV=1;SPV=0.0016883;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3 +chr13 34802492 . T TA 0 PASS DP=70;GPV=1;SPV=0.014855;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,2:18,4 +chr13 34992238 . G GTATA 0 PASS DP=31;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:3,4:1,2 +chr13 36142687 . AC A 0 PASS DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:3,3:5,3 +chr13 37335480 . A ATTTACCCCAT 0 PASS DP=40;GPV=1;SPV=0.043236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,4:5,2 +chr13 37844797 . G A 0 PASS DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,6:10,4 +chr13 42841090 . T C 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3 +chr13 43434943 . T G 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,5:3,1 +chr13 43879836 . T C 0 PASS DP=43;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:6,3:7,1 +chr13 44066175 . C CT 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2 +chr13 47559950 . CAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=17;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr13 47702279 . A T 0 PASS DP=42;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,6:5,5:1,1 +chr13 48636013 . T TACATATAGAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=35;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,1:4,3 +chr13 48641363 . C CAAA 0 PASS DP=46;GPV=1;SPV=0.010106;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:5,6:6,2 +chr13 51479845 . C CT 0 PASS DP=20;GPV=1;SPV=0.12281;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1 +chr13 51963736 . C CA 0 PASS DP=36;GPV=1;SPV=0.027836;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:9,4:1,0 +chr13 52223586 . A T 0 PASS DP=37;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,1:3,4 +chr13 52281163 . TGTGTGTGTGC T 0 PASS DP=113;GPV=1;SPV=0.045903;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:22,5:30,10 +chr13 52333747 . G A 0 PASS DP=76;GPV=1;SPV=0.039673;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,6:16,1 +chr13 52504583 . G A 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,5:7,2 +chr13 54672674 . GGT G 0 PASS DP=28;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,3:3,1 +chr13 56018887 . G T 0 PASS DP=60;GPV=1;SPV=0.011027;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:15,5:14,4 +chr13 56024786 . C A 0 PASS DP=58;GPV=1;SPV=0.00094048;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,6:10,3 +chr13 56089113 . TA T 0 PASS DP=61;GPV=1;SPV=0.011057;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2 +chr13 56277723 . A G 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2 +chr13 56368797 . C T 0 PASS DP=62;GPV=1;SPV=0.0041064;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:15,5:10,3 +chr13 58582543 . G T 0 PASS DP=54;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,4:13,1:8,3 +chr13 59443228 . T TAAAAAAAAAA 0 PASS DP=26;GPV=1;SPV=0.15;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,4:4,3 +chr13 60014969 . T TTTTTGTTTTG 0 PASS DP=47;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,12:3,5:8,7 +chr13 60321660 . CT C 0 PASS DP=24;GPV=1;SPV=0.0059289;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1 +chr13 60662347 . CT C 0 PASS DP=25;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4 +chr13 60859020 . G A 0 PASS DP=81;GPV=1;SPV=7.8995e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:18,8:10,4 +chr13 61015496 . C CTCTCTCTCTCTCTCTCTCTATATATA 0 PASS DP=46;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,5:4,2 +chr13 64416401 . CATCTATCT C 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,5:10,5 +chr13 65280394 . A AGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.00066757;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:9,5:4,8 +chr13 65288043 . G A 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2 +chr13 65513553 . TAAAA T 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:4,8:1,3 +chr13 66114842 . T A 0 PASS DP=24;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,2:5,3 +chr13 66687365 . C T 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,4:10,3 +chr13 66756542 . C T 0 PASS DP=47;GPV=1;SPV=0.014137;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:5,3:10,3 +chr13 66820549 . G T 0 PASS DP=53;GPV=1;SPV=0.00070506;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:4,5:13,4 +chr13 69784882 . A AT 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr13 70753162 . CTT C 0 PASS DP=27;GPV=1;SPV=0.017168;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1 +chr13 71864164 . AGCGC A 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3 +chr13 77377562 . T C 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,2:5,3 +chr13 79219049 . G A 0 PASS DP=38;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:0,1:5,1 +chr13 81088696 . C A 0 PASS DP=67;GPV=1;SPV=1.2865e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,24:6,10:6,14 +chr13 81658352 . A G 0 PASS DP=34;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,4:5,2:5,2 +chr13 82684636 . T A 0 PASS DP=71;GPV=1;SPV=0.060625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:13,2:19,2 +chr13 86756239 . C A 0 PASS DP=57;GPV=1;SPV=0.2416;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,4:6,3:15,1 +chr13 87090543 . C CT 0 PASS DP=50;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,4:7,9 +chr13 87331654 . C T 0 PASS DP=72;GPV=1;SPV=0.001382;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,6:11,1 +chr13 87837249 . T TTCTCTCTCTC 0 PASS DP=30;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:3,4:10,1 +chr13 88347891 . A AG 0 PASS DP=16;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0 +chr13 89527562 . C CTTTTCTTTTCT 0 PASS DP=40;GPV=1;SPV=0.0018592;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:5,6:5,2 +chr13 90344571 . C CATATAT 0 PASS DP=34;GPV=1;SPV=0.04308;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1 +chr13 92064310 . C T 0 PASS DP=73;GPV=1;SPV=2.8865e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:16,10:6,7 +chr13 93459617 . G A 0 PASS DP=67;GPV=1;SPV=8.3669e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,9:9,5 +chr13 93495622 . TTTCTG T 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,3:4,2 +chr13 94214796 . G A 0 PASS DP=57;GPV=1;SPV=0.00046384;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,8:11,2 +chr13 94455381 . T TAG 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,3:8,5 +chr13 94738966 . A T 0 PASS DP=71;GPV=1;SPV=5.0918e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7 +chr13 96074548 . C T 0 PASS DP=38;GPV=1;SPV=0.018018;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2 +chr13 97852827 . G C 0 PASS DP=44;GPV=1;SPV=0.0063975;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2 +chr13 98064640 . C CTT 0 PASS DP=24;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1 +chr13 98078917 . A G 0 PASS DP=47;GPV=1;SPV=2.3919e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:4,6:5,8 +chr13 98705202 . G A 0 PASS DP=30;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,7:1,1:1,6 +chr13 101092811 . C T 0 PASS DP=54;GPV=1;SPV=0.0001513;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,4:11,8 +chr13 101693624 . G GTCTGTCTA 0 PASS DP=42;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:3,5:8,2 +chr13 102728046 . A G 0 PASS DP=46;GPV=1;SPV=0.0065417;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:4,4:5,4 +chr13 104498343 . ATATATTTT A 0 PASS DP=25;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,4:5,4 +chr13 106245764 . G T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2 +chr13 106763047 . ACCCTCTCTCTCTCT A 0 PASS DP=43;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:6,2:4,2 +chr13 107176318 . T A 0 PASS DP=43;GPV=1;SPV=0.010674;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:5,3:3,1 +chr13 109147175 . GA G 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1 +chr13 109765530 . A T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,1:8,3 +chr13 110960659 . GT G 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:15,4:8,1 +chr13 111622955 . C G 0 PASS DP=19;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,3:1,2 +chr13 112640591 . C T 0 PASS DP=19;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,4:0,1:1,3 +chr13 112787108 . C CG 0 PASS DP=54;GPV=1;SPV=0.031421;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1 +chr13 113512592 . C T 0 PASS DP=43;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,3:9,3 +chr13 113593081 . G A 0 PASS DP=33;GPV=1;SPV=0.016935;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:4,1:2,2 +chr13 113804730 . C G 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,5:8,3 +chr14 16085235 . G T 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,4:1,4 +chr14 18276446 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr14 18288630 . C T 0 PASS DP=54;GPV=1;SPV=0.044297;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,4:4,1 +chr14 18293945 . G T 0 PASS DP=71;GPV=1;SPV=0.010989;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,5:15,8 +chr14 18426424 . A T 0 PASS DP=64;GPV=1;SPV=0.03636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,2:13,6 +chr14 18529582 . A G 0 PASS DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3 +chr14 18700193 . C T 0 PASS DP=54;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,6:9,2 +chr14 18939956 . CCTGA C 0 PASS DP=148;GPV=1;SPV=0.00027128;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:60,21:28,7:32,14 +chr14 18969317 . G A 0 PASS DP=58;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,7:8,6:3,1 +chr14 18969319 . A G 0 PASS DP=65;GPV=1;SPV=0.009659;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:12,6:16,1 +chr14 18974856 . T A 0 PASS DP=65;GPV=1;SPV=3.57e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:7,4:8,12 +chr14 18979682 . G A 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr14 19108286 . T C 0 PASS DP=82;GPV=1;SPV=0.0086983;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:16,4:12,1 +chr14 19232448 . C T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2 +chr14 19298439 . CT C 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:2,3:1,1 +chr14 19301996 . A G 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,4:7,1 +chr14 19372235 . G A 0 PASS DP=45;GPV=1;SPV=0.016655;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,3:9,2 +chr14 19390940 . C A 0 PASS DP=37;GPV=1;SPV=0.033806;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,3:2,4 +chr14 19475066 . T G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr14 19667110 . T A 0 PASS DP=40;GPV=1;SPV=0.040303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4 +chr14 19817651 . C T 0 PASS DP=57;GPV=1;SPV=2.5681e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,20:4,9:4,11 +chr14 21222040 . CAA C 0 PASS DP=24;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1 +chr14 21696025 . GTT G 0 PASS DP=50;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr14 22034527 . A ATTTTTT 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chr14 22637442 . A C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr14 23962302 . G A 0 PASS DP=39;GPV=1;SPV=0.026928;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1 +chr14 24719632 . ATG A 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5 +chr14 25523801 . CT C 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr14 26813631 . GT G 0 PASS DP=23;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:4,2:0,0 +chr14 29466327 . TA T 0 PASS DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:5,3:12,3 +chr14 29826544 . G A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2 +chr14 30445162 . GA G 0 PASS DP=54;GPV=1;SPV=0.00058755;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,7:7,2 +chr14 31052934 . A AT 0 PASS DP=36;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,5:4,3 +chr14 31933233 . ATT A 0 PASS DP=22;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,3:1,2 +chr14 32475678 . C CT 0 PASS DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:5,3:3,1 +chr14 34702539 . AT A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2 +chr14 34840768 . C A 0 PASS DP=48;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,2:0,1:6,1 +chr14 35007749 . A AT 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,2:13,2 +chr14 36122153 . A ATT 0 PASS DP=46;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:2,5:4,4 +chr14 37200850 . ATG A 0 PASS DP=29;GPV=1;SPV=0.001204;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:0,6:5,1 +chr14 39187659 . T C 0 PASS DP=42;GPV=1;SPV=0.025265;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,4:5,5 +chr14 39300937 . TATATAC T 0 PASS DP=44;GPV=1;SPV=0.019016;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,2:5,4 +chr14 39300953 . CAT C 0 PASS DP=44;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,2:6,4 +chr14 39300963 . C T 0 PASS DP=48;GPV=1;SPV=0.046549;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:10,2:5,4 +chr14 42051617 . T TA 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,4:5,2 +chr14 42624923 . A G 0 PASS DP=60;GPV=1;SPV=7.799e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:8,8:9,8 +chr14 43213467 . C T 0 PASS DP=64;GPV=1;SPV=3.148e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:9,11:13,7 +chr14 43528639 . C T 0 PASS DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:12,6:10,13 +chr14 45692176 . A G 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,6:6,9 +chr14 45887569 . T A 0 PASS DP=44;GPV=1;SPV=0.0076872;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,3:10,3 +chr14 48767763 . A AT 0 PASS DP=56;GPV=1;SPV=0.043843;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:10,7:12,3 +chr14 49960412 . C T 0 PASS DP=33;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,3:3,2 +chr14 50224327 . A G 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,3:6,1 +chr14 50236734 . A T 0 PASS DP=40;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,3:3,1:3,2 +chr14 50479008 . T G 0 PASS DP=40;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:3,1:1,1 +chr14 50811544 . C CTT 0 PASS DP=23;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:5,2:1,2 +chr14 56444101 . C T 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3 +chr14 56922072 . C CAT 0 PASS DP=30;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,5:6,1 +chr14 57323176 . CAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:2,5:2,2 +chr14 60667650 . A AATAT 0 PASS DP=26;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:6,1:2,3 +chr14 63439356 . T C 0 PASS DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1 +chr14 63846582 . T TTTCTG 0 PASS DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:6,2:7,3 +chr14 64492119 . A C 0 PASS DP=33;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,2:1,1:5,1 +chr14 64583073 . A T 0 PASS DP=40;GPV=1;SPV=0.0027027;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,5:8,2 +chr14 64949722 . CA C 0 PASS DP=28;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2 +chr14 65247931 . C CACACAT 0 PASS DP=36;GPV=1;SPV=0.006031;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:5,7:5,5 +chr14 65266406 . T A 0 PASS DP=39;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,4:1,3:1,1 +chr14 66516183 . T A 0 PASS DP=51;GPV=1;SPV=0.00016223;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,2:9,9 +chr14 67780754 . G A 0 PASS DP=56;GPV=1;SPV=8.1801e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,19:6,13:7,6 +chr14 67803228 . C T 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr14 69654792 . T G 0 PASS DP=36;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,2:1,1:0,1 +chr14 69745994 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:5,3:3,3 +chr14 70710663 . CTTTCT C 0 PASS DP=35;GPV=1;SPV=0.058162;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,2:12,2 +chr14 70710706 . TTC T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,2:10,2 +chr14 71906790 . A T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:7,5:1,4 +chr14 71906791 . G GAAAAGCATATGCTGAAAAGCATAATACTTTTTA 0 PASS DP=29;GPV=1;SPV=0.0020704;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,5:1,3 +chr14 73536516 . T TA 0 PASS DP=47;GPV=1;SPV=0.014845;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr14 74014389 . C A 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,2:11,2 +chr14 74520801 . AAATG A 0 PASS DP=62;GPV=1;SPV=0.0079392;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,6:8,6 +chr14 74868313 . TTATA T 0 PASS DP=21;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,3:1,1 +chr14 75153777 . C CTTTTTTTTT 0 PASS DP=36;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:6,3:10,3 +chr14 75257469 . G A 0 PASS DP=66;GPV=1;SPV=0.00012491;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:13,8:11,6 +chr14 79233666 . C CTG 0 PASS DP=47;GPV=1;SPV=0.0036809;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,7:5,2 +chr14 79233730 . A C 0 PASS DP=41;GPV=1;SPV=0.0041486;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,4:3,7 +chr14 79343870 . C A 0 PASS DP=71;GPV=1;SPV=2.537e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,9:10,5 +chr14 80195814 . TA T 0 PASS DP=40;GPV=1;SPV=0.00021796;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:8,9:2,1 +chr14 81572276 . T A 0 PASS DP=31;GPV=1;SPV=0.060215;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr14 82823662 . C A 0 PASS DP=49;GPV=1;SPV=0.00063642;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6 +chr14 83327150 . C T 0 PASS DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:7,5:15,4 +chr14 83577812 . G GAT 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4 +chr14 83936135 . AAG A 0 PASS DP=31;GPV=1;SPV=0.029654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,2:2,2 +chr14 84703045 . GATATAT G 0 PASS DP=44;GPV=1;SPV=0.019067;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4 +chr14 85440994 . C CT 0 PASS DP=24;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:6,5:0,1 +chr14 85470210 . T C 0 PASS DP=42;GPV=1;SPV=1.7795e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:6,23:2,14:4,9 +chr14 87551018 . A T 0 PASS DP=60;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:2,2:1,1:1,1 +chr14 88484211 . CTAT C 0 PASS DP=39;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5 +chr14 88716732 . AAC A 0 PASS DP=35;GPV=1;SPV=0.00049132;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,12:3,8:0,4 +chr14 90237501 . A AAGG 0 PASS DP=39;GPV=1;SPV=0.0043369;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,12:3,5:6,7 +chr14 90983813 . C CTCTCTG 0 PASS DP=40;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:7,2:1,4 +chr14 91572426 . CT C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,4:3,5 +chr14 91661524 . C CAT 0 PASS DP=46;GPV=1;SPV=0.0015312;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:4,6:1,3 +chr14 92808663 . G GT 0 PASS DP=42;GPV=1;SPV=0.00024986;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,7:3,5 +chr14 92808701 . G GA 0 PASS DP=39;GPV=1;SPV=0.0011741;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:8,5:3,6 +chr14 93357775 . G A 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:0,2:5,4 +chr14 94533813 . TAA T 0 PASS DP=44;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:10,3:6,3 +chr14 95476466 . C T 0 PASS DP=70;GPV=1;SPV=0.0024931;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4 +chr14 97068412 . CT C 0 PASS DP=34;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:3,2:9,2 +chr14 97154203 . TTTCCTTCCTTCC T 0 PASS DP=32;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:0,1:12,3 +chr14 97193720 . A AT 0 PASS DP=53;GPV=1;SPV=0.00067301;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,7:10,3 +chr14 99130508 . GAA G 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:7,7:0,1 +chr14 99811184 . T G 0 PASS DP=48;GPV=1;SPV=9.8865e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,5:7,5 +chr14 99846281 . A ATTTT 0 PASS DP=34;GPV=1;SPV=0.010024;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:11,9:1,1 +chr14 101397815 . T C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,4:1,4 +chr14 101397817 . T C 0 PASS DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2 +chr14 101674930 . T C 0 PASS DP=51;GPV=1;SPV=0.031763;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:12,2:6,2 +chr14 101942512 . CA C 0 PASS DP=38;GPV=1;SPV=0.0025217;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2 +chr14 102202372 . GT G 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr14 104097956 . G A 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:2,2:3,7 +chr14 105598771 . C T 0 PASS DP=53;GPV=1;SPV=0.016371;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,8:6,1 +chr14 105927535 . AGG A 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,2:9,2 +chr14 106419214 . G A 0 PASS DP=25;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,3:1,1 +chr14 106459602 . C CT 0 PASS DP=27;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:1,6:2,2 +chr15 17745729 . G A 0 PASS DP=25;GPV=1;SPV=0.040316;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1 +chr15 18358341 . A G 0 PASS DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,3:9,4 +chr15 18749305 . A G 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr15 19910197 . C T 0 PASS DP=72;GPV=1;SPV=6.3405e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:9,10:10,7 +chr15 20170452 . C A 0 PASS DP=82;GPV=1;SPV=0.036717;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:13,7:19,1 +chr15 20247398 . C A 0 PASS DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:10,3:28,7 +chr15 20336424 . G A 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,7:10,3 +chr15 20336442 . G GTTTTTTGTTT 0 PASS DP=46;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:6,7:5,3 +chr15 20347933 . G A 0 PASS DP=105;GPV=1;SPV=0.020231;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:21,5:16,8 +chr15 20355877 . C CTTTCTTTCTTTTTTTT 0 PASS DP=70;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,4:15,1:13,3 +chr15 20550951 . G A 0 PASS DP=32;GPV=1;SPV=0.04308;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1 +chr15 20582882 . T C 0 PASS DP=90;GPV=1;SPV=0.049331;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:17,9:23,3 +chr15 20670150 . T C 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr15 21254323 . C T 0 PASS DP=44;GPV=1;SPV=0.014276;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1 +chr15 22422812 . C T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,6:10,1 +chr15 22444687 . G C 0 PASS DP=72;GPV=1;SPV=0.016949;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,9:10,3 +chr15 22949262 . TGCCTAAGCCTAAAGCGGGGACCAGGCGGGCCGGAAGGCGGGCACAATGC T 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,2:4,2 +chr15 23217430 . ATTT A 0 PASS DP=39;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:10,3:6,2 +chr15 24080017 . C T 0 PASS DP=57;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,3:10,10 +chr15 24334109 . G A 0 PASS DP=74;GPV=1;SPV=0.085094;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:19,1:22,4 +chr15 25132879 . CA C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,7:5,2 +chr15 26251855 . A T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr15 28422218 . A G 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:2,2:16,2 +chr15 28493416 . T C 0 PASS DP=217;GPV=1;SPV=0.032621;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:110,13:66,7:44,6 +chr15 29057406 . A C 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,4:12,7 +chr15 30524903 . G A 0 PASS DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,5:12,3 +chr15 30691517 . C T 0 PASS DP=55;GPV=1;SPV=0.025964;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr15 31165579 . C CTT 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr15 31567594 . C T 0 PASS DP=66;GPV=1;SPV=0.00058845;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:19,10:8,3 +chr15 32044253 . C CTCCTTCCTTCCTTCCTTCCT 0 PASS DP=35;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:5,3:5,2 +chr15 32162135 . C T 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:13,6:2,4 +chr15 32181183 . A G 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr15 32580639 . C G 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,3:4,3 +chr15 33343334 . T A 0 PASS DP=63;GPV=1;SPV=1.022e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:11,13:9,7 +chr15 33889981 . G A 0 PASS DP=67;GPV=1;SPV=1.4224e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,7:12,7 +chr15 34053319 . A AATAT 0 PASS DP=18;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:2,1:1,1 +chr15 34423155 . A G 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,2:13,2 +chr15 34543009 . T C 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,2:4,4 +chr15 34949276 . A ATGAGCCACTACACTGGGCC 0 PASS DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1 +chr15 35482218 . T G 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,5:10,10 +chr15 36178301 . A AT 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:9,7:13,3 +chr15 36278095 . CATAT C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,2:7,2 +chr15 36286610 . G A 0 PASS DP=30;GPV=1;SPV=0.0090312;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1 +chr15 36471641 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,5:5,1 +chr15 36722985 . G GTGTGTGTGTGTT 0 PASS DP=72;GPV=1;SPV=0.10396;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,5:11,3:14,2 +chr15 40504337 . G GTGTATATA 0 PASS DP=70;GPV=1;SPV=0.035289;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,6:9,1:10,5 +chr15 40951605 . A C 0 PASS DP=23;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:0,0:1,2 +chr15 41179528 . A AAAGGAAGGAAGGAAGG 0 PASS DP=35;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:4,3:4,4 +chr15 42789854 . T TACACACACACAC 0 PASS DP=49;GPV=1;SPV=0.00026695;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:8,7:4,5 +chr15 45934450 . G A 0 PASS DP=54;GPV=1;SPV=0.00070687;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3 +chr15 48314237 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr15 48435768 . GTA G 0 PASS DP=26;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,5:2,2:0,3 +chr15 50874129 . C T 0 PASS DP=38;GPV=1;SPV=0.0074524;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:3,4:9,8 +chr15 51583106 . CT C 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr15 51747017 . T TA 0 PASS DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr15 51912441 . T A 0 PASS DP=49;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:5,1:2,1 +chr15 52462280 . G A 0 PASS DP=48;GPV=1;SPV=0.034205;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:2,1:3,3 +chr15 55518897 . C A 0 PASS DP=49;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,4:6,2:7,2 +chr15 55778195 . C CTCTT 0 PASS DP=30;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,2:9,3 +chr15 56312269 . C T 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,5:9,5 +chr15 57007764 . TTCTTTCTTTCTTTCTTTCTTTCTTTCTC T 0 PASS DP=27;GPV=1;SPV=0.059289;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,0:4,2 +chr15 57223643 . GTTT G 0 PASS DP=34;GPV=1;SPV=0.1532;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:9,4:4,2 +chr15 57336148 . CT C 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:3,5:0,1 +chr15 59093361 . T TC 0 PASS DP=24;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,1:3,4 +chr15 59359330 . T A 0 PASS DP=32;GPV=1;SPV=0.0023112;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,4:3,4 +chr15 59719506 . CAAAA C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr15 60009125 . A T 0 PASS DP=65;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:0,2:0,1:0,1 +chr15 60132343 . GGGA G 0 PASS DP=23;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:3,1:0,1 +chr15 60993644 . CA C 0 PASS DP=33;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,9:4,1 +chr15 61451616 . T TTTTTTC 0 PASS DP=27;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:2,1:3,4 +chr15 62096613 . AT A 0 PASS DP=51;GPV=1;SPV=0.00077001;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,5:4,3 +chr15 64718753 . G GGTGTGTGTGTGT 0 PASS DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:8,2:6,4 +chr15 66432959 . A AGTGTGT 0 PASS DP=36;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:6,5:2,1 +chr15 67055971 . C CAA 0 PASS DP=38;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:7,5:4,2 +chr15 68741633 . C CA 0 PASS DP=27;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:5,5:1,1 +chr15 69078387 . C T 0 PASS DP=45;GPV=1;SPV=0.0072477;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,2:11,6 +chr15 72665570 . A G 0 PASS DP=47;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,3:8,7 +chr15 74073767 . C T 0 PASS DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr15 76330727 . T TTA 0 PASS DP=42;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,6:1,5:2,1 +chr15 76572915 . T TCACACA 0 PASS DP=35;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:2,3:2,6 +chr15 77024962 . G A 0 PASS DP=62;GPV=1;SPV=1.4083e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,8:7,4 +chr15 77343482 . CTTTT C 0 PASS DP=46;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:2,3:9,3 +chr15 77509555 . CGTGTGT C 0 PASS DP=37;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:4,4:1,1 +chr15 77883340 . C G 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,5:2,2 +chr15 78215763 . A G 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:17,2:7,3 +chr15 78877117 . T A 0 PASS DP=30;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1 +chr15 80339873 . G A 0 PASS DP=65;GPV=1;SPV=0.0014199;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,4:14,6 +chr15 80382911 . C CAATA 0 PASS DP=41;GPV=1;SPV=0.027154;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,4:10,1 +chr15 81179982 . CT C 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,3:5,3 +chr15 82383908 . T A 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,4:6,2 +chr15 82427338 . CTCTT C 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,1:17,3 +chr15 82523942 . A G 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr15 82916807 . A AT 0 PASS DP=56;GPV=1;SPV=0.011338;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4 +chr15 83417902 . T TA 0 PASS DP=41;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:5,8:4,2 +chr15 83822769 . C T 0 PASS DP=66;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:8,7:10,5 +chr15 84419727 . G A 0 PASS DP=67;GPV=1;SPV=0.0219;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:10,7:4,3:6,4 +chr15 84425290 . C T 0 PASS DP=61;GPV=1;SPV=0.014936;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2 +chr15 85151765 . CAA C 0 PASS DP=24;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1 +chr15 85504515 . A C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr15 85841139 . A ATTTTT 0 PASS DP=40;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chr15 86380935 . A AGTGTGT 0 PASS DP=56;GPV=1;SPV=0.0010872;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr15 86703427 . C T 0 PASS DP=57;GPV=1;SPV=8.1679e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,4:5,6 +chr15 86826036 . C CA 0 PASS DP=41;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,15:8,9:5,6 +chr15 87055660 . A C 0 PASS DP=70;GPV=1;SPV=3.3351e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:12,8:9,4 +chr15 89354401 . CTT C 0 PASS DP=24;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:2,2:1,3 +chr15 89952550 . CA C 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,4:5,1 +chr15 90175683 . CT C 0 PASS DP=43;GPV=1;SPV=0.0015067;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,7:4,2 +chr15 90407221 . T C 0 PASS DP=71;GPV=1;SPV=0.0005505;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,3:10,7 +chr15 90651919 . CT C 0 PASS DP=26;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,3:3,2 +chr15 90735236 . AAT A 0 PASS DP=32;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,12:2,9:1,3 +chr15 91420126 . CTG C 0 PASS DP=52;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr15 92587513 . C CAAAAA 0 PASS DP=49;GPV=1;SPV=0.013891;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:9,6:5,1 +chr15 92767870 . C T 0 PASS DP=54;GPV=1;SPV=0.017924;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,2:8,5 +chr15 92999083 . CA C 0 PASS DP=27;GPV=1;SPV=0.015182;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr15 93677756 . A T 0 PASS DP=42;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr15 93940288 . AAAAG A 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3 +chr15 94162144 . T C 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2 +chr15 96447738 . TATC T 0 PASS DP=51;GPV=1;SPV=0.013865;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,4:10,4 +chr15 96857600 . C CAAAAAA 0 PASS DP=37;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,8:4,1 +chr15 96865316 . G A 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2 +chr15 99085857 . T G 0 PASS DP=66;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,2:4,1:3,1 +chr15 100759176 . A T 0 PASS DP=57;GPV=1;SPV=1.3625e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,8:6,7 +chr15 101258008 . CTT C 0 PASS DP=36;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,2:2,4 +chr15 101743927 . C CTCTT 0 PASS DP=75;GPV=1;SPV=0.04982;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,1:13,6 +chr16 1833555 . T C 0 PASS DP=35;GPV=1;SPV=0.064336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,4:6,3 +chr16 2542624 . A G 0 PASS DP=53;GPV=1;SPV=0.028132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1 +chr16 3329169 . G GACACAC 0 PASS DP=20;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,6:1,5:1,1 +chr16 3889002 . G T 0 PASS DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:6,2:13,8 +chr16 5801341 . C CT 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,4:4,2 +chr16 6134683 . A ATTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2 +chr16 6220657 . T A 0 PASS DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,5:7,4 +chr16 6367254 . G GTTTTGT 0 PASS DP=59;GPV=1;SPV=0.0019606;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,17:6,9:9,8 +chr16 6562757 . T A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,1:8,5 +chr16 8563144 . AG A 0 PASS DP=65;GPV=1;SPV=0.024978;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:13,5:6,3 +chr16 9019654 . T A 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2 +chr16 9199895 . GTCCT G 0 PASS DP=22;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:2,2:0,3 +chr16 10612629 . A AG 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,2:10,3 +chr16 11067187 . TTG T 0 PASS DP=38;GPV=1;SPV=0.13514;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,2:8,1 +chr16 11505470 . T C 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,2:3,5 +chr16 11712929 . A AACACACACACACAC 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2 +chr16 12105223 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr16 12380394 . C A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr16 12817263 . CT C 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,3:4,3 +chr16 14360253 . C CCA 0 PASS DP=38;GPV=1;SPV=0.00026837;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:3,8:2,3 +chr16 14978118 . G A 0 PASS DP=112;GPV=1;SPV=0.049005;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:28,7:14,1 +chr16 15164208 . A ATTTTTTT 0 PASS DP=28;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:1,1:3,4 +chr16 15175445 . G A 0 PASS DP=90;GPV=1;SPV=0.039721;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:13,7:22,5 +chr16 15857202 . T C 0 PASS DP=52;GPV=1;SPV=0.022078;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:14,4:4,2 +chr16 15861496 . A G 0 PASS DP=34;GPV=1;SPV=0.098383;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,3:4,2 +chr16 16139611 . C CAA 0 PASS DP=31;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:4,6:4,1 +chr16 16274259 . T TTGGA 0 PASS DP=57;GPV=1;SPV=0.038169;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,3:10,4 +chr16 16462130 . G C 0 PASS DP=40;GPV=1;SPV=0.0070044;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2 +chr16 16464052 . G GTGTGTT 0 PASS DP=48;GPV=1;SPV=0.015379;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,2:13,3 +chr16 16602352 . T G 0 PASS DP=40;GPV=1;SPV=8.1261e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:8,10:2,5 +chr16 16918059 . C T 0 PASS DP=61;GPV=1;SPV=3.3463e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:8,7:5,9 +chr16 17044323 . C T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr16 18121796 . GGTTT G 0 PASS DP=83;GPV=1;SPV=0.037048;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:22,5:21,1 +chr16 18130476 . TAAAAAA T 0 PASS DP=27;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:2,2:5,3 +chr16 18144826 . CT C 0 PASS DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr16 19101995 . CTTTT C 0 PASS DP=22;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:3,3:0,2 +chr16 19162689 . C T 0 PASS DP=54;GPV=1;SPV=0.02313;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3 +chr16 20195336 . A AATTT 0 PASS DP=38;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,3:6,5 +chr16 20295279 . C CTT 0 PASS DP=23;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,8:1,7:1,1 +chr16 20489820 . C T 0 PASS DP=55;GPV=1;SPV=0.028251;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3 +chr16 20545378 . G A 0 PASS DP=60;GPV=1;SPV=0.0022994;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:15,4:5,3 +chr16 20596673 . G A 0 PASS DP=74;GPV=1;SPV=0.085094;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:26,1:15,4 +chr16 21269193 . G T 0 PASS DP=38;GPV=1;SPV=0.010026;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr16 21307622 . GTATATA G 0 PASS DP=43;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:2,4:5,5 +chr16 21354148 . C T 0 PASS DP=63;GPV=1;SPV=0.011503;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,1:9,6 +chr16 22469165 . C T 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,4:7,5 +chr16 22553505 . A G 0 PASS DP=77;GPV=1;SPV=0.023251;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,3:9,1 +chr16 22632007 . CTATA C 0 PASS DP=43;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,9:5,6:6,3 +chr16 23875759 . T C 0 PASS DP=58;GPV=1;SPV=0.021895;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,6:14,2 +chr16 24479358 . T C 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr16 24579241 . G GTTTTTT 0 PASS DP=43;GPV=1;SPV=0.19016;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,5:20,3:5,2 +chr16 26887122 . G A 0 PASS DP=28;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:6,1:0,1 +chr16 28162560 . A AT 0 PASS DP=52;GPV=1;SPV=0.085726;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,2:10,3 +chr16 29482918 . T G 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr16 29648003 . T TTG 0 PASS DP=25;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,2:3,2 +chr16 30032642 . GT G 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr16 30342200 . A AT 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr16 32125849 . GT G 0 PASS DP=80;GPV=1;SPV=0.0053747;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,4:12,4 +chr16 32176170 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr16 32465038 . G A 0 PASS DP=73;GPV=1;SPV=0.021299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:15,3:15,8 +chr16 32837836 . G C 0 PASS DP=230;GPV=1;SPV=0.021664;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:106,23:69,20:37,3 +chr16 32838865 . A G 0 PASS DP=312;GPV=1;SPV=0.024159;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:146,19:81,14:65,5 +chr16 32839745 . G A 0 PASS DP=189;GPV=1;SPV=0.0027228;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,15:47,9:33,6 +chr16 33049073 . GA G 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,1:5,3 +chr16 33506889 . TAAAAAA T 0 PASS DP=40;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr16 33543309 . C G 0 PASS DP=154;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:21,8:32,4 +chr16 33912493 . T C 0 PASS DP=88;GPV=1;SPV=0.013578;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,1:15,8 +chr16 34585666 . C A 0 PASS DP=7755;GPV=1;SPV=0.025427;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:3857:3455,402:2115,221:1340,181 +chr16 34811099 . G A 0 PASS DP=66;GPV=1;SPV=0.0003763;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:13,4:12,8 +chr16 35340267 . C A 0 PASS DP=57;GPV=1;SPV=4.1874e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,6:7,5 +chr16 37852470 . G T 0 PASS DP=229;GPV=1;SPV=0.029413;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:99,17:30,5:69,12 +chr16 37878930 . C T 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr16 46460582 . A G 0 PASS DP=129;GPV=1;SPV=0.023263;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:25,12:27,3 +chr16 48416181 . T A 0 PASS DP=49;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,2:0,2:0,0 +chr16 49058614 . AT A 0 PASS DP=25;GPV=1;SPV=0.27198;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2 +chr16 49702923 . A G 0 PASS DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,2:22,2 +chr16 50938942 . C T 0 PASS DP=73;GPV=1;SPV=4.0799e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:14,6:11,8 +chr16 51663775 . G T 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,3:16,10 +chr16 52826730 . AGT A 0 PASS DP=31;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:2,3:3,2 +chr16 53403333 . G C 0 PASS DP=60;GPV=1;SPV=0.0021291;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3 +chr16 53551675 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:2,7:5,1 +chr16 54680831 . A ATACATGTATGTG 0 PASS DP=26;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:3,2:8,4 +chr16 55472560 . TAAAAAAAAA T 0 PASS DP=21;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr16 56300008 . C CGTGT 0 PASS DP=40;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,4:8,4 +chr16 57002644 . TG T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3 +chr16 58085568 . A ATTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,2:7,2 +chr16 59312571 . T TTC 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:2,1:8,4 +chr16 59312572 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4 +chr16 59858527 . G A 0 PASS DP=58;GPV=1;SPV=3.7587e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5 +chr16 60311989 . G T 0 PASS DP=54;GPV=1;SPV=0.00078689;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,14:13,6:7,8 +chr16 61428604 . CTTT C 0 PASS DP=37;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:2,1:2,1 +chr16 62079731 . CT C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,6:1,2 +chr16 62486857 . A C 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:4,1:2,2 +chr16 62658786 . G A 0 PASS DP=55;GPV=1;SPV=1.1853e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,6:5,6 +chr16 63024573 . A G 0 PASS DP=63;GPV=1;SPV=6.6009e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,3:10,7 +chr16 64370054 . G GCACACACA 0 PASS DP=51;GPV=1;SPV=0.021468;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,8:10,2 +chr16 64398295 . C T 0 PASS DP=62;GPV=1;SPV=0.00016426;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,5:6,7 +chr16 69944708 . T C 0 PASS DP=49;GPV=1;SPV=0.04269;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5 +chr16 70050982 . T C 0 PASS DP=42;GPV=1;SPV=0.13415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:3,1:16,2 +chr16 71022770 . G A 0 PASS DP=54;GPV=1;SPV=0.028482;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,4:10,5 +chr16 71832216 . G A 0 PASS DP=20;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,2:0,1 +chr16 74423310 . C T 0 PASS DP=55;GPV=1;SPV=0.051458;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr16 74495106 . CT C 0 PASS DP=21;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:3,5:0,1 +chr16 74502722 . GT G 0 PASS DP=24;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:2,4:2,5 +chr16 74821501 . A G 0 PASS DP=61;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:10,3:6,6 +chr16 75180991 . A AAAG 0 PASS DP=45;GPV=1;SPV=0.0067977;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,1:6,5 +chr16 75732085 . CAA C 0 PASS DP=25;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:2,3:1,1 +chr16 75939212 . G A 0 PASS DP=64;GPV=1;SPV=0.001906;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,4:9,3 +chr16 78078648 . G A 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,3:7,5 +chr16 80672318 . T TACACAC 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,2:8,2 +chr16 81280320 . CACAG C 0 PASS DP=18;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,1:2,4 +chr16 81376465 . ATGTG A 0 PASS DP=32;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:4,5:0,1 +chr16 84013729 . CT C 0 PASS DP=50;GPV=1;SPV=0.016727;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,9:9,3 +chr16 84940732 . C T 0 PASS DP=75;GPV=1;SPV=0.0056634;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:16,6:17,2 +chr16 86197778 . G GTGTGTGTGT 0 PASS DP=43;GPV=1;SPV=0.0023232;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,11:3,3:7,8 +chr16 87013968 . TTCCCTCATTCAC T 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,7:5,2 +chr16 87562669 . A ATTTT 0 PASS DP=37;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:4,6:6,2 +chr16 87564563 . T G 0 PASS DP=48;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:0,2:0,1:0,1 +chr16 88728472 . G A 0 PASS DP=43;GPV=1;SPV=0.12479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:3,1:16,2 +chr16 89426529 . T TCACA 0 PASS DP=42;GPV=1;SPV=0.0065388;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:8,6:6,2 +chr16 90207896 . A AG 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr17 243024 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr17 515956 . CT C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,3:0,1 +chr17 579185 . C A 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2 +chr17 605741 . G T 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:3,9:0,1 +chr17 1417665 . C CTT 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:7,4:1,1 +chr17 2509676 . G A 0 PASS DP=71;GPV=1;SPV=2.7714e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:13,8:8,4 +chr17 2760947 . CT C 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:4,2:13,2 +chr17 2872213 . C CA 0 PASS DP=19;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr17 2979460 . GT G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chr17 4215925 . A T 0 PASS DP=71;GPV=1;SPV=0.0097246;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,4:14,4 +chr17 4747337 . C CA 0 PASS DP=37;GPV=1;SPV=0.0050388;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:9,3:1,6 +chr17 7676333 . CCTCCAGGT C 0 PASS DP=51;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,4:1,3:2,1 +chr17 7714124 . C CGT 0 PASS DP=37;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,9:5,8:3,1 +chr17 8299542 . T TA 0 PASS DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,2:9,5 +chr17 8401335 . A C 0 PASS DP=47;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:5,2:4,5 +chr17 9754279 . CT C 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1 +chr17 9773741 . T TC 0 PASS DP=44;GPV=1;SPV=0.0018566;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:3,1:3,8 +chr17 10363315 . C CA 0 PASS DP=30;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:5,7:3,1 +chr17 11543910 . CA C 0 PASS DP=37;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr17 12020110 . C T 0 PASS DP=68;GPV=1;SPV=0.001198;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:15,5:12,5 +chr17 12676253 . A G 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr17 13235142 . AGTGTGTGT A 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr17 13595847 . G T 0 PASS DP=36;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:5,3:4,1 +chr17 14694438 . G A 0 PASS DP=41;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,1:5,4 +chr17 14876514 . A T 0 PASS DP=51;GPV=1;SPV=0.0039329;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:5,1:2,4 +chr17 15264253 . GAT G 0 PASS DP=53;GPV=1;SPV=0.15598;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:17,1:9,2 +chr17 15264255 . T TAG 0 PASS DP=50;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,5:6,4:5,1 +chr17 15810688 . T TAC 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2 +chr17 15810734 . CATGTGTGT C 0 PASS DP=26;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,2:4,3 +chr17 15826095 . G GT 0 PASS DP=23;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,4:2,2 +chr17 16161240 . C G 0 PASS DP=47;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:3,1:2,1 +chr17 16812494 . G GCTGCTGGAGGAGTTCCCATCCCTGCAGGTGT 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,2:4,5 +chr17 18436242 . C T 0 PASS DP=61;GPV=1;SPV=0.038781;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,5:12,3 +chr17 19638169 . TACAC T 0 PASS DP=30;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:3,7:3,4 +chr17 20393023 . A G 0 PASS DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,4:14,1 +chr17 20490397 . C T 0 PASS DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2 +chr17 20579254 . C A 0 PASS DP=75;GPV=1;SPV=0.028543;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,5:11,5 +chr17 21569888 . G GTGTGTGTGTGTGTA 0 PASS DP=36;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:0,10:0,6:0,4 +chr17 21665064 . A G 0 PASS DP=115;GPV=1;SPV=0.026358;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:21,7:20,5 +chr17 21987851 . AAG A 0 PASS DP=48;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,6:12,2 +chr17 22823512 . G A 0 PASS DP=181;GPV=1;SPV=0.020573;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:78,13:21,5:57,8 +chr17 22868198 . T A 0 PASS DP=40;GPV=1;SPV=0.046053;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:5,1:7,2 +chr17 22912586 . C T 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1 +chr17 22953324 . G A 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1 +chr17 26738747 . T C 0 PASS DP=69;GPV=1;SPV=0.032184;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:19,8:8,1 +chr17 26750226 . G A 0 PASS DP=145;GPV=1;SPV=0.011419;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:11,1:50,7 +chr17 26750553 . TA T 0 PASS DP=90;GPV=1;SPV=0.014972;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:15,4:20,1 +chr17 26750627 . G C 0 PASS DP=81;GPV=1;SPV=0.044441;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:18,4:11,1 +chr17 26756863 . G A 0 PASS DP=121;GPV=1;SPV=0.01171;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:49,18:18,9:31,9 +chr17 26777173 . C A 0 PASS DP=189;GPV=1;SPV=0.045845;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:74,17:35,9:39,8 +chr17 26846954 . C G 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,3:10,3 +chr17 26953277 . A G 0 PASS DP=311;GPV=1;SPV=0.0092;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:130,18:49,6:81,12 +chr17 26958286 . G A 0 PASS DP=275;GPV=1;SPV=0.046035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:131,16:61,4:70,12 +chr17 26958523 . A T 0 PASS DP=128;GPV=1;SPV=0.009667;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:28,3:28,6 +chr17 29424436 . C CA 0 PASS DP=33;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:9,4:1,0 +chr17 29743907 . C CT 0 PASS DP=24;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:4,2:4,2 +chr17 31537633 . C T 0 PASS DP=62;GPV=1;SPV=0.0031736;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2 +chr17 31675974 . G A 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5 +chr17 31866887 . C CAA 0 PASS DP=26;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1 +chr17 34754836 . GCTTAC G 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3 +chr17 35530512 . GA G 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1 +chr17 35581299 . T A 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:1,1:1,1 +chr17 35871916 . AT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,2:3,3 +chr17 36270978 . C A 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:24,4:2,0 +chr17 36536524 . CT C 0 PASS DP=28;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,8:2,1 +chr17 37439942 . A AT 0 PASS DP=46;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:6,2:4,2 +chr17 39153334 . G GGTGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:4,3:5,3 +chr17 40728399 . C CT 0 PASS DP=23;GPV=1;SPV=0.0079051;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr17 40815568 . TA T 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2 +chr17 41225342 . C A 0 PASS DP=47;GPV=1;SPV=0.004375;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:7,11:9,7 +chr17 41226775 . G T 0 PASS DP=67;GPV=1;SPV=0.033503;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:4,3:21,3 +chr17 41733052 . T TTTTG 0 PASS DP=28;GPV=1;SPV=0.03835;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,1:4,3 +chr17 41928852 . T TAA 0 PASS DP=40;GPV=1;SPV=0.0074142;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,13:2,10:3,3 +chr17 42973190 . T TG 0 PASS DP=26;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:5,3:2,5 +chr17 43177572 . A C 0 PASS DP=39;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:10,1:4,3 +chr17 45250258 . TAC T 0 PASS DP=34;GPV=1;SPV=0.0042363;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:4,5:1,2 +chr17 45757480 . C CA 0 PASS DP=27;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:5,3:1,2 +chr17 47890931 . C CA 0 PASS DP=42;GPV=1;SPV=0.0057417;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:4,4:3,4 +chr17 48985838 . C A 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2 +chr17 49553043 . CCACA C 0 PASS DP=41;GPV=1;SPV=0.025565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:5,3:2,2 +chr17 51849183 . GTA G 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:2,2:0,5 +chr17 53025193 . T TTC 0 PASS DP=32;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,13:2,5:5,8 +chr17 53334019 . T TAC 0 PASS DP=35;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,11:3,7:0,4 +chr17 53702004 . AT A 0 PASS DP=36;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2 +chr17 54593370 . G T 0 PASS DP=68;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:9,7:14,8 +chr17 55277235 . A G 0 PASS DP=33;GPV=1;SPV=0.0012432;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,7:0,3:0,4 +chr17 55336527 . T G 0 PASS DP=55;GPV=1;SPV=1.7815e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:10,10:5,4 +chr17 55402087 . CA C 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,5:2,3 +chr17 56303851 . A ATTTTT 0 PASS DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:13,1:4,4 +chr17 57030254 . A T 0 PASS DP=41;GPV=1;SPV=0.0041286;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:2,3:10,3 +chr17 57860372 . ATTTT A 0 PASS DP=19;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:2,2:1,3 +chr17 61311903 . CAT C 0 PASS DP=54;GPV=1;SPV=0.0017321;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:6,5:13,11 +chr17 63086771 . T C 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,2:3,3 +chr17 63629362 . T C 0 PASS DP=60;GPV=1;SPV=0.00013375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,7:11,7 +chr17 65286372 . T TAC 0 PASS DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,6:11,4 +chr17 65989245 . AAAAAAAG A 0 PASS DP=38;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:6,6:6,6 +chr17 67579625 . T TC 0 PASS DP=37;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:5,9:7,1 +chr17 67952084 . C G 0 PASS DP=33;GPV=1;SPV=0.0017509;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:2,4:7,4 +chr17 68163538 . C CA 0 PASS DP=36;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:3,3:2,1 +chr17 68172141 . A AG 0 PASS DP=64;GPV=1;SPV=0.046007;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:10,1:16,3 +chr17 70417232 . C CA 0 PASS DP=34;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1 +chr17 70494004 . T G 0 PASS DP=47;GPV=1;SPV=0.22036;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:17,2:11,2 +chr17 70602851 . CA C 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1 +chr17 71032587 . G GT 0 PASS DP=24;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,3:4,1 +chr17 71338895 . T TC 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr17 71608515 . A ATC 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1 +chr17 72117696 . C A 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:12,4:16,9 +chr17 73569199 . C CT 0 PASS DP=30;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1 +chr17 74176320 . T TAAAAAA 0 PASS DP=37;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,5:6,2 +chr17 74285976 . G T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,3:7,4 +chr17 74867306 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1 +chr17 75358914 . T TATATAA 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2 +chr17 75938864 . C CA 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,3:4,4 +chr17 76238085 . CA C 0 PASS DP=42;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,4:5,2 +chr17 76935870 . T C 0 PASS DP=40;GPV=1;SPV=0.033472;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:4,3:11,5 +chr17 77145095 . A G 0 PASS DP=38;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,6:6,1:5,5 +chr17 77413954 . TTTTC T 0 PASS DP=55;GPV=1;SPV=0.051458;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr17 77718749 . G GTGTGTGTCTGTGTGTGCACATGCA 0 PASS DP=51;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:12,3:15,2 +chr17 77876975 . C CA 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1 +chr17 80024355 . A ACAC 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:1,2:25,3 +chr17 80024394 . GAC G 0 PASS DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:5,3:16,3 +chr17 81661858 . C CA 0 PASS DP=32;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:7,5:2,1 +chr18 77738 . C T 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,1:12,3 +chr18 105445 . G A 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,3:3,1 +chr18 1629634 . ATATGTGAATG A 0 PASS DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4 +chr18 1632822 . T C 0 PASS DP=36;GPV=1;SPV=0.015123;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:9,8:3,4 +chr18 1748634 . ATT A 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,1:6,3 +chr18 2826171 . T G 0 PASS DP=44;GPV=1;SPV=0.01057;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,2:8,4 +chr18 3378878 . C CAA 0 PASS DP=25;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1 +chr18 3382688 . G GA 0 PASS DP=29;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:5,5:1,2 +chr18 3782035 . G C 0 PASS DP=44;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:2,1:2,1 +chr18 3827062 . G C 0 PASS DP=60;GPV=1;SPV=0.00026567;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5 +chr18 3992328 . T C 0 PASS DP=55;GPV=1;SPV=0.0025527;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,5:11,3 +chr18 4080891 . T C 0 PASS DP=45;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:4,2:5,2 +chr18 7842889 . A G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr18 10208596 . G T 0 PASS DP=62;GPV=1;SPV=0.0013375;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,4:9,3 +chr18 11133872 . C A 0 PASS DP=60;GPV=1;SPV=0.0017532;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,5:11,6 +chr18 12521336 . CT C 0 PASS DP=43;GPV=1;SPV=0.036744;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:15,4:6,3 +chr18 12792282 . C CTT 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,6:3,3 +chr18 13275039 . C CA 0 PASS DP=45;GPV=1;SPV=0.00048831;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:6,11:6,5 +chr18 13443709 . T TCTCCTCCTCCTCCTC 0 PASS DP=35;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:7,7:3,6 +chr18 14467281 . C CTT 0 PASS DP=39;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:3,8:2,1 +chr18 14716165 . A G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2 +chr18 15197059 . C T 0 PASS DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,2:9,8 +chr18 15410300 . C A 0 PASS DP=176;GPV=1;SPV=0.022939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:73,18:32,8:41,10 +chr18 15467183 . A C 0 PASS DP=73;GPV=1;SPV=0.033038;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:27,4:1,0 +chr18 15552815 . G T 0 PASS DP=165;GPV=1;SPV=0.045507;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:45,7:12,6 +chr18 15603964 . G T 0 PASS DP=67;GPV=1;SPV=0.060505;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:12,2:18,2 +chr18 15622831 . G C 0 PASS DP=44;GPV=1;SPV=0.053885;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,2:14,2 +chr18 15651172 . G A 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4 +chr18 15699753 . C T 0 PASS DP=37;GPV=1;SPV=0.0079853;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:3,1:9,5 +chr18 16959351 . G A 0 PASS DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:9,4:1,1 +chr18 17368130 . T G 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr18 17377058 . T G 0 PASS DP=62;GPV=1;SPV=0.0029264;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,5:5,3 +chr18 17837660 . G C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr18 18293571 . C T 0 PASS DP=122;GPV=1;SPV=0.029181;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,14:17,6:41,8 +chr18 18629431 . G T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:18,3:3,1 +chr18 19039313 . C A 0 PASS DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr18 19502295 . T G 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr18 20557981 . G C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,0:16,4 +chr18 20815525 . C A 0 PASS DP=75;GPV=1;SPV=0.0011434;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,2:8,4 +chr18 20838526 . TC T 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:3,4:6,6 +chr18 20838540 . T C 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,2:8,5 +chr18 20956155 . A C 0 PASS DP=59;GPV=1;SPV=0.038561;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,3:11,1 +chr18 22232505 . C T 0 PASS DP=70;GPV=1;SPV=0.0016259;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:13,1:15,9 +chr18 22232528 . A C 0 PASS DP=49;GPV=1;SPV=0.010404;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,1:8,7 +chr18 23414331 . A C 0 PASS DP=52;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,9:13,7:4,2 +chr18 24729487 . CT C 0 PASS DP=17;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,7:0,4:0,3 +chr18 27137977 . C T 0 PASS DP=47;GPV=1;SPV=0.0038981;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,4:6,3 +chr18 27567221 . T TAA 0 PASS DP=31;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:3,5:3,1 +chr18 28518417 . C T 0 PASS DP=46;GPV=1;SPV=0.01229;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,3:13,4 +chr18 30059360 . T C 0 PASS DP=68;GPV=1;SPV=2.9583e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,7:11,6 +chr18 30706535 . G A 0 PASS DP=57;GPV=1;SPV=4.3012e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:12,6:4,6 +chr18 31001091 . A G 0 PASS DP=56;GPV=1;SPV=0.0091169;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,6:9,2 +chr18 32086355 . G GT 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,4:2,5 +chr18 32567283 . CA C 0 PASS DP=55;GPV=1;SPV=0.02299;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:17,4:7,2 +chr18 33093675 . AT A 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,6:7,1 +chr18 33109832 . C A 0 PASS DP=52;GPV=1;SPV=5.4595e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:7,8:5,6 +chr18 33768234 . C T 0 PASS DP=48;GPV=1;SPV=0.0086905;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,5:7,12 +chr18 34440623 . AG A 0 PASS DP=57;GPV=1;SPV=0.0015629;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:10,2:9,6 +chr18 34691046 . T A 0 PASS DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,4:9,5 +chr18 35885155 . CA C 0 PASS DP=33;GPV=1;SPV=0.0045189;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,5:2,1 +chr18 36206244 . C CT 0 PASS DP=18;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,4:2,1 +chr18 36463387 . AAAAT A 0 PASS DP=97;GPV=1;SPV=0.063808;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,5:17,3:25,2 +chr18 36720277 . G A 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,1:10,4 +chr18 36869541 . A T 0 PASS DP=52;GPV=1;SPV=0.00090261;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:6,3:14,10 +chr18 36984904 . CAA C 0 PASS DP=40;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:3,5:5,2 +chr18 37462794 . T G 0 PASS DP=49;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,4:3,1:5,3 +chr18 37857488 . CTTTCTTT C 0 PASS DP=43;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,3:11,2 +chr18 40601560 . C CTT 0 PASS DP=52;GPV=1;SPV=0.046888;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:2,2:15,5 +chr18 42825432 . A G 0 PASS DP=56;GPV=1;SPV=0.00014918;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:10,6:6,4 +chr18 43425274 . C T 0 PASS DP=65;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:6,5:14,8 +chr18 45209180 . C CAA 0 PASS DP=37;GPV=1;SPV=0.0047407;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:8,8:1,1 +chr18 50852319 . GTTTTTTT G 0 PASS DP=51;GPV=1;SPV=0.028977;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,1:9,3 +chr18 50913860 . T TATACACACACACACAC 0 PASS DP=32;GPV=1;SPV=0.013177;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr18 51131287 . TAC T 0 PASS DP=50;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:5,5:14,3 +chr18 51384788 . TATATATATATA T 0 PASS DP=17;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,3:0,0:2,3 +chr18 51844934 . GT G 0 PASS DP=46;GPV=1;SPV=0.031008;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3 +chr18 53407528 . G GATATATAT 0 PASS DP=29;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:4,4:3,1 +chr18 53499957 . G T 0 PASS DP=54;GPV=1;SPV=0.0038679;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7 +chr18 57390047 . T A 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,4:11,4 +chr18 57527638 . A G 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1 +chr18 58646138 . AG A 0 PASS DP=49;GPV=1;SPV=0.089104;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,1:13,4 +chr18 58920735 . CGTGTGTGTGT C 0 PASS DP=38;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:10,5:0,1 +chr18 59237459 . C CA 0 PASS DP=19;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr18 59522993 . C CAAA 0 PASS DP=25;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,4:0,1 +chr18 62850074 . T A 0 PASS DP=26;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:2,1:4,1 +chr18 63878575 . G GAA 0 PASS DP=45;GPV=1;SPV=0.0083111;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,8:11,1 +chr18 64062944 . C CTA 0 PASS DP=36;GPV=1;SPV=0.016993;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr18 64062989 . T C 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr18 65420400 . T A 0 PASS DP=61;GPV=1;SPV=0.0026788;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,4:10,4 +chr18 66760271 . A G 0 PASS DP=63;GPV=1;SPV=3.5142e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,9:10,7 +chr18 67402010 . A AG 0 PASS DP=24;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,1:3,4 +chr18 68026237 . T TA 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,4:12,1 +chr18 68504776 . G GAGGAAGGAAGGA 0 PASS DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:4,4:0,2 +chr18 69214371 . CTT C 0 PASS DP=19;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,6:1,3:2,3 +chr18 71156912 . G C 0 PASS DP=39;GPV=1;SPV=0.02564;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,1:8,7 +chr18 71205760 . C CTCCA 0 PASS DP=38;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:3,4:7,2 +chr18 71210783 . C CT 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,2:6,3 +chr18 71420401 . G GTATATATATATATATA 0 PASS DP=35;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,3:2,3 +chr18 72625698 . C CTA 0 PASS DP=34;GPV=1;SPV=0.00030146;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,4:4,6 +chr18 73094559 . AAAC A 0 PASS DP=50;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,3:10,2 +chr18 73983993 . C CA 0 PASS DP=43;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:11,6:4,2 +chr18 74174891 . C G 0 PASS DP=55;GPV=1;SPV=0.00070165;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,9:7,6:6,3 +chr18 76126690 . T C 0 PASS DP=55;GPV=1;SPV=1.7815e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,8:9,6 +chr18 77796251 . CT C 0 PASS DP=52;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:7,4:9,3 +chr18 78012529 . C T 0 PASS DP=56;GPV=1;SPV=0.00023235;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:9,6:9,5 +chr18 78109088 . TTTCTTTCTTTCTTTC T 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3 +chr18 79017137 . C A 0 PASS DP=37;GPV=1;SPV=0.015156;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr18 79505741 . T C 0 PASS DP=34;GPV=1;SPV=0.33824;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:15,1:6,2 +chr18 79732475 . T C 0 PASS DP=29;GPV=1;SPV=0.022281;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr19 103817 . TAC T 0 PASS DP=88;GPV=1;SPV=0.0030733;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:20,11:7,3 +chr19 319605 . C T 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,5:7,1 +chr19 785067 . A G 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,6:6,4 +chr19 2155498 . C T 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:6,8:2,3 +chr19 2990703 . A ACAT 0 PASS DP=57;GPV=1;SPV=0.0023444;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,10:7,7:4,3 +chr19 3313188 . T TGTTGGAGACCATGAAGGGAGGCC 0 PASS DP=47;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5 +chr19 3789721 . CT C 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr19 5433796 . C CAA 0 PASS DP=22;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:1,4:3,1 +chr19 5465489 . C G 0 PASS DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:14,8:4,5 +chr19 7355068 . TCACACACACACACACACACA T 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,3:3,5 +chr19 7692107 . T C 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1 +chr19 8771295 . G T 0 PASS DP=239;GPV=1;SPV=0.046443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:103,23:76,19:27,4 +chr19 8775174 . G T 0 PASS DP=58;GPV=1;SPV=0.036961;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:0,2:23,8 +chr19 8987807 . ATTGTT A 0 PASS DP=37;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:3,6:9,4 +chr19 9820707 . G A 0 PASS DP=24;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,3:0,0:2,3 +chr19 9908464 . ATTTTT A 0 PASS DP=19;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:0,3:2,3 +chr19 10301799 . T G 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3 +chr19 10724339 . G A 0 PASS DP=59;GPV=1;SPV=1.2849e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:8,6:4,7 +chr19 12308695 . T A 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:0,2:3,3 +chr19 13572639 . C T 0 PASS DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5 +chr19 13903673 . C CA 0 PASS DP=60;GPV=1;SPV=0.038355;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,8:9,3 +chr19 14318078 . ATATATATAT A 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,2:3,3 +chr19 15650803 . C T 0 PASS DP=29;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,1:5,3 +chr19 16790642 . T A 0 PASS DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr19 17681069 . C CTT 0 PASS DP=20;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,3:2,1 +chr19 18159144 . C CTTTTTTTTTTT 0 PASS DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:2,1:4,3 +chr19 18345725 . C CA 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1 +chr19 18621422 . T C 0 PASS DP=42;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:6,1:13,3 +chr19 18983363 . CA C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3 +chr19 19318113 . C T 0 PASS DP=20;GPV=1;SPV=0.042892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:1,1:3,2 +chr19 19440986 . TTTCCTTCCC T 0 PASS DP=32;GPV=1;SPV=0.0074534;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:3,3:4,3 +chr19 19691395 . C G 0 PASS DP=29;GPV=1;SPV=0.0014993;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:2,2:5,6 +chr19 19984567 . C CA 0 PASS DP=18;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr19 20770110 . AG A 0 PASS DP=73;GPV=1;SPV=0.028958;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:10,1:22,7 +chr19 20770112 . C A 0 PASS DP=71;GPV=1;SPV=0.036531;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:11,1:19,6 +chr19 21565265 . C CT 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr19 22489382 . A G 0 PASS DP=70;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:13,9:5,9 +chr19 22885732 . C T 0 PASS DP=72;GPV=1;SPV=2.1758e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:16,7:8,8 +chr19 23478513 . A T 0 PASS DP=59;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:0,0:2,2 +chr19 24355432 . G GAAAT 0 PASS DP=117;GPV=1;SPV=0.044976;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:50,15:26,2:24,13 +chr19 24372163 . C T 0 PASS DP=114;GPV=1;SPV=0.00041668;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:40,21:23,10:17,11 +chr19 24395330 . C T 0 PASS DP=119;GPV=1;SPV=2.0682e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:50,17:20,6:30,11 +chr19 24441180 . C A 0 PASS DP=102;GPV=1;SPV=0.038827;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:31,9:6,1 +chr19 25425602 . T G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr19 25963563 . G A 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr19 26161162 . T G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr19 28819965 . G A 0 PASS DP=59;GPV=1;SPV=0.016072;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chr19 29901079 . C T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr19 30333181 . A G 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,3:18,1 +chr19 30881294 . G A 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,3:2,2 +chr19 32421647 . G A 0 PASS DP=43;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,7:3,4:4,3 +chr19 35624102 . G GTT 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,3:2,3 +chr19 36771535 . A G 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2 +chr19 36956601 . C T 0 PASS DP=52;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,7:5,5:5,2 +chr19 37229616 . G A 0 PASS DP=42;GPV=1;SPV=0.13415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:6,1:13,2 +chr19 37355397 . T G 0 PASS DP=49;GPV=1;SPV=0.0001676;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4 +chr19 37375315 . C T 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:4,1:10,6 +chr19 37537911 . AT A 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,1:7,3 +chr19 39633991 . T TC 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,4:6,4 +chr19 41645411 . A G 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr19 43303650 . ATGTGTGTGTGTGTGTG A 0 PASS DP=31;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,6:2,1 +chr19 44167314 . C CT 0 PASS DP=28;GPV=1;SPV=0.0022121;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,6:1,3 +chr19 44532565 . AAAAGAAAG A 0 PASS DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:3,2:5,5 +chr19 44587574 . G A 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1 +chr19 45626380 . CT C 0 PASS DP=22;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:3,4:3,1 +chr19 46200507 . TTC T 0 PASS DP=40;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr19 46399136 . TG T 0 PASS DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5 +chr19 46793102 . T TAA 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr19 46941876 . T TAA 0 PASS DP=29;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,3:4,1 +chr19 47420910 . T TCTCACA 0 PASS DP=37;GPV=1;SPV=0.015156;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,3:7,1 +chr19 47908463 . T A 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr19 47915101 . G A 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr19 47920306 . A C 0 PASS DP=327;GPV=1;SPV=0.024939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:137,20:71,14:66,6 +chr19 47939926 . T A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr19 48016456 . TTTTCTTTCCTTC T 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:2,1:11,5 +chr19 48559006 . C T 0 PASS DP=48;GPV=1;SPV=0.014432;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3 +chr19 48655202 . G T 0 PASS DP=24;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,2:0,0 +chr19 49321321 . A T 0 PASS DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:0,1:1,1 +chr19 51362170 . C T 0 PASS DP=55;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,5:16,3:2,2 +chr19 51608754 . A G 0 PASS DP=41;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:3,3:7,1 +chr19 51995567 . T C 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,1:5,3 +chr19 52865470 . T A 0 PASS DP=43;GPV=1;SPV=0.11077;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:6,1:1,1 +chr19 52865924 . TATG T 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,3:7,3 +chr19 52865936 . C T 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,3:6,3 +chr19 53007064 . C CA 0 PASS DP=40;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,4:5,3 +chr19 53125130 . G A 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,9:9,3 +chr19 53127875 . C CAAA 0 PASS DP=42;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:4,4:9,1 +chr19 53309270 . T C 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,8:2,1 +chr19 53820691 . A AT 0 PASS DP=39;GPV=1;SPV=0.0016476;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,13:3,9:2,4 +chr19 54221926 . G T 0 PASS DP=69;GPV=1;SPV=0.048616;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,3:14,3 +chr19 54286038 . C T 0 PASS DP=61;GPV=1;SPV=0.031211;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,1:12,5 +chr19 54353176 . AG A 0 PASS DP=43;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:6,4:11,2 +chr19 54779651 . G A 0 PASS DP=35;GPV=1;SPV=0.0076246;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,4:8,2 +chr19 55335498 . A T 0 PASS DP=43;GPV=1;SPV=0.0050719;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,4:8,4 +chr19 55734371 . A C 0 PASS DP=31;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:2,1:5,1 +chr19 56745414 . G A 0 PASS DP=84;GPV=1;SPV=0.025744;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:13,2:18,6 +chr2 736402 . T C 0 PASS DP=51;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,2:10,3 +chr2 802134 . C G 0 PASS DP=31;GPV=1;SPV=0.0067841;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:3,4:5,7 +chr2 869219 . C G 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2 +chr2 1235444 . GC G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2 +chr2 1262695 . G C 0 PASS DP=36;GPV=1;SPV=0.0092864;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3 +chr2 1342708 . C G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr2 1861649 . T C 0 PASS DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:2,1:7,4 +chr2 3199807 . G GGA 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:5,1:11,3 +chr2 6151090 . C CTT 0 PASS DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1 +chr2 6169093 . TTTTC T 0 PASS DP=23;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,1:5,5 +chr2 6677975 . A G 0 PASS DP=36;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,2:0,0 +chr2 6677977 . A G 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,2:0,0 +chr2 6896532 . C CTT 0 PASS DP=29;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,6:2,2 +chr2 7480506 . A C 0 PASS DP=55;GPV=1;SPV=0.00099636;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,19:10,7:6,12 +chr2 8995590 . A AT 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,8:8,1 +chr2 10554207 . C G 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,2:8,2 +chr2 12825828 . TA T 0 PASS DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,5:8,4 +chr2 12878380 . GTATATATATATGTGTATATATATATATATA G 0 PASS DP=45;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,4:9,3 +chr2 14735748 . AAAAG A 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2 +chr2 16006439 . G T 0 PASS DP=62;GPV=1;SPV=2.2354e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4 +chr2 17447149 . G T 0 PASS DP=50;GPV=1;SPV=0.003465;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,2:8,5 +chr2 17503990 . CA C 0 PASS DP=36;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:6,5:3,1 +chr2 21572766 . TA T 0 PASS DP=37;GPV=1;SPV=0.021701;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,5:7,4 +chr2 22395978 . C G 0 PASS DP=65;GPV=1;SPV=0.0044459;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,7:16,6 +chr2 23910651 . T TGAGGTCA 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:12,9:1,1 +chr2 24109152 . C CA 0 PASS DP=33;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:10,5:0,2 +chr2 24116876 . C CA 0 PASS DP=50;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:10,3:10,1 +chr2 24773141 . A C 0 PASS DP=36;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:3,1:4,1 +chr2 27642960 . C T 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr2 31618478 . G A 0 PASS DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3 +chr2 31737876 . G GACAC 0 PASS DP=43;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:9,3:5,1 +chr2 32461047 . C G 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,1:5,4 +chr2 33341729 . A AAAATATATATAT 0 PASS DP=42;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:6,3:8,4 +chr2 34243744 . CA C 0 PASS DP=30;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:2,9:1,1 +chr2 34787738 . CT C 0 PASS DP=27;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,3:3,1 +chr2 35521833 . C T 0 PASS DP=44;GPV=1;SPV=0.0056979;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,1:5,4 +chr2 35701204 . TAA T 0 PASS DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,1:15,3 +chr2 35974670 . T C 0 PASS DP=32;GPV=1;SPV=0.10733;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,2:1,4 +chr2 38482904 . T A 0 PASS DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,1:12,4 +chr2 38482905 . A T 0 PASS DP=63;GPV=1;SPV=0.039873;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chr2 39207517 . G A 0 PASS DP=67;GPV=1;SPV=3.6127e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,14:10,2 +chr2 39619216 . A AT 0 PASS DP=37;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3 +chr2 40972280 . T TAAA 0 PASS DP=31;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,5:0,1 +chr2 41324684 . T TTCTCTCTCTCTCTC 0 PASS DP=29;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:3,4:7,3 +chr2 42347307 . C CT 0 PASS DP=34;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:5,5:4,4 +chr2 43636340 . A AGAT 0 PASS DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3 +chr2 44346784 . G A 0 PASS DP=60;GPV=1;SPV=3.3707e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:7,10:13,9 +chr2 44400928 . GTGTA G 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,1:1,3 +chr2 46769584 . G GA 0 PASS DP=42;GPV=1;SPV=0.0041286;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr2 47009888 . T G 0 PASS DP=35;GPV=1;SPV=0.11053;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:3,1:2,1 +chr2 47344111 . TAA T 0 PASS DP=41;GPV=1;SPV=0.0069071;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,3:4,7 +chr2 47950544 . G A 0 PASS DP=24;GPV=1;SPV=0.0034325;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,1:2,5 +chr2 48288282 . A AGAGT 0 PASS DP=43;GPV=1;SPV=0.0058369;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,7:5,3 +chr2 48288283 . CTTTTAT C 0 PASS DP=47;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,7:7,5 +chr2 50951963 . A ATATTT 0 PASS DP=35;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:10,4:7,3 +chr2 51413347 . A G 0 PASS DP=50;GPV=1;SPV=0.002854;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:8,2:8,5 +chr2 51834653 . ATCTATATATCTATATATATATATATCTCTCTCTCTCTCTCTCTC A 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,4:5,5 +chr2 52111307 . C CA 0 PASS DP=40;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:5,5:5,2 +chr2 52305046 . T C 0 PASS DP=64;GPV=1;SPV=1.9001e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:5,7:6,6 +chr2 55726018 . G A 0 PASS DP=64;GPV=1;SPV=1.884e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:7,4:9,11 +chr2 56693547 . T TATATATATATATATATACAC 0 PASS DP=39;GPV=1;SPV=0.011671;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,5:8,1 +chr2 56889637 . C T 0 PASS DP=53;GPV=1;SPV=0.0099416;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,5:6,4:3,1 +chr2 57595116 . T TGC 0 PASS DP=43;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:6,4:6,4 +chr2 60251438 . T TTAGA 0 PASS DP=68;GPV=1;SPV=0.0061654;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,6:10,5 +chr2 60560194 . T G 0 PASS DP=59;GPV=1;SPV=3.3518e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:5,6:6,8 +chr2 60625053 . C G 0 PASS DP=57;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,5:9,1 +chr2 61596396 . A T 0 PASS DP=39;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3 +chr2 65125864 . CT C 0 PASS DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,1:1,3 +chr2 65234600 . T C 0 PASS DP=45;GPV=1;SPV=0.0047587;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,3:8,3 +chr2 65444840 . TTTTCTTTCTTTC T 0 PASS DP=45;GPV=1;SPV=0.016237;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:4,4:10,6 +chr2 65647998 . AT A 0 PASS DP=46;GPV=1;SPV=0.0033311;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:5,5:8,1 +chr2 66130391 . T G 0 PASS DP=36;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,5:4,2:3,3 +chr2 71245513 . CT C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3 +chr2 71635766 . G A 0 PASS DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:2,1:2,1 +chr2 71635770 . G A 0 PASS DP=30;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:5,1:2,1 +chr2 74182834 . C A 0 PASS DP=52;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,3:12,6 +chr2 74473763 . AT A 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr2 77603466 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,1:0,1 +chr2 78518329 . CT C 0 PASS DP=74;GPV=1;SPV=0.012115;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:22,3:13,5 +chr2 78543274 . G GTT 0 PASS DP=50;GPV=1;SPV=0.0001029;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,13:5,10:1,3 +chr2 79046766 . C A 0 PASS DP=60;GPV=1;SPV=0.00024707;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,3:8,8 +chr2 80881318 . C T 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:3,4:10,7 +chr2 81963292 . G A 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:11,13:5,2 +chr2 82186972 . GTA G 0 PASS DP=59;GPV=1;SPV=0.032848;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1 +chr2 82477666 . A T 0 PASS DP=54;GPV=1;SPV=0.00064337;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,8:11,7 +chr2 83212156 . A AT 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,2:17,2 +chr2 84141454 . C T 0 PASS DP=50;GPV=1;SPV=0.0084701;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,3:12,3 +chr2 84480962 . C CA 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr2 85194385 . C T 0 PASS DP=56;GPV=1;SPV=4.8428e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:8,4:4,8 +chr2 86226632 . C CTTTTT 0 PASS DP=38;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2 +chr2 86716902 . A AAAAAAAAAACAAAC 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,3:8,2 +chr2 87080887 . GAACT G 0 PASS DP=70;GPV=1;SPV=0.072031;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,3:17,1 +chr2 87140408 . T C 0 PASS DP=68;GPV=1;SPV=0.013126;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:7,5:16,4 +chr2 87175658 . A G 0 PASS DP=26;GPV=1;SPV=0.11077;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr2 87348767 . T C 0 PASS DP=56;GPV=1;SPV=0.034192;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,3:9,4 +chr2 87361291 . G A 0 PASS DP=100;GPV=1;SPV=0.016609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:19,5:19,4 +chr2 87364750 . TGATGA T 0 PASS DP=106;GPV=1;SPV=0.023935;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:28,2:20,6 +chr2 87368746 . TA T 0 PASS DP=63;GPV=1;SPV=0.071412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:14,1:19,4 +chr2 87417936 . CA C 0 PASS DP=19;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr2 87425940 . CAAGCCAGCCACCCAGCA C 0 PASS DP=35;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,1:6,3 +chr2 87472920 . A G 0 PASS DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:2,5:1,4 +chr2 87597072 . A G 0 PASS DP=33;GPV=1;SPV=0.02064;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,3:3,2:0,1 +chr2 87656421 . A G 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr2 87721053 . T G 0 PASS DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr2 87879624 . A C 0 PASS DP=27;GPV=1;SPV=0.031121;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:0,2:8,7 +chr2 89315609 . T C 0 PASS DP=41;GPV=1;SPV=0.010747;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,4:4,3 +chr2 89538074 . T C 0 PASS DP=122;GPV=1;SPV=0.030096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:59,19:24,10:35,9 +chr2 89552645 . C A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr2 89559108 . C T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr2 89593824 . A T 0 PASS DP=113;GPV=1;SPV=0.048552;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:25,6:8,3 +chr2 90022764 . C T 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1 +chr2 90058484 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,1:4,3 +chr2 90133849 . G A 0 PASS DP=33;GPV=1;SPV=0.013278;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:7,8:3,4 +chr2 90254023 . G C 0 PASS DP=84;GPV=1;SPV=0.04931;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:1,1:30,4 +chr2 90287226 . C T 0 PASS DP=72;GPV=1;SPV=0.042693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:21,6:19,1 +chr2 90371425 . A G 0 PASS DP=88;GPV=1;SPV=0.037418;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,10:7,4:26,6 +chr2 90371859 . G A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:13,2:3,2 +chr2 91427568 . C G 0 PASS DP=162;GPV=1;SPV=0.0079957;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:37,1:34,8 +chr2 91432684 . G C 0 PASS DP=236;GPV=1;SPV=0.033118;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:115,14:58,5:57,9 +chr2 91451180 . T C 0 PASS DP=197;GPV=1;SPV=0.018932;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:93,18:46,10:47,8 +chr2 91472185 . C T 0 PASS DP=102;GPV=1;SPV=0.035165;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,10:24,7:12,3 +chr2 91473716 . G C 0 PASS DP=271;GPV=1;SPV=0.017556;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:113,22:55,17:58,5 +chr2 91499851 . TTGGCTGGC T 0 PASS DP=43;GPV=1;SPV=0.01539;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,5:6,1 +chr2 91649254 . A T 0 PASS DP=70;GPV=1;SPV=0.026147;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:6,1:19,5 +chr2 91669627 . T C 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:2,3:11,1 +chr2 91727840 . C T 0 PASS DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr2 91892509 . C T 0 PASS DP=164;GPV=1;SPV=0.026338;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:21,3:47,7 +chr2 92057127 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr2 92057166 . T A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 92197366 . G T 0 PASS DP=449;GPV=1;SPV=0.002724;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:198,29:117,17:81,12 +chr2 92358452 . T A 0 PASS DP=69;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,1:11,6 +chr2 92376082 . C T 0 PASS DP=48;GPV=1;SPV=0.018165;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:2,1:13,8 +chr2 92380957 . T A 0 PASS DP=151;GPV=1;SPV=0.027334;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:60,13:5,1:55,12 +chr2 92416953 . G C 0 PASS DP=48;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,1:7,3 +chr2 92436292 . T G 0 PASS DP=99;GPV=1;SPV=0.022694;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:18,8:19,2 +chr2 92595112 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 92667798 . T G 0 PASS DP=102;GPV=1;SPV=0.0087838;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:24,6:15,2 +chr2 92687005 . C T 0 PASS DP=80;GPV=1;SPV=0.043165;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:13,5:21,4 +chr2 92705371 . G A 0 PASS DP=51;GPV=1;SPV=0.021326;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,1:7,6 +chr2 92795746 . C T 0 PASS DP=81;GPV=1;SPV=0.028929;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,9:23,8:6,1 +chr2 93249851 . T G 0 PASS DP=89;GPV=1;SPV=0.033687;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:1,0:34,4 +chr2 93253263 . G C 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:10,2:17,2 +chr2 93263138 . G C 0 PASS DP=80;GPV=1;SPV=0.0084925;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:33,7:2,0 +chr2 93455444 . T G 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr2 93485871 . A G 0 PASS DP=32;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr2 93580446 . G T 0 PASS DP=67;GPV=1;SPV=0.068312;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:28,2:3,2 +chr2 93674089 . A G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr2 93824475 . T G 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3 +chr2 93857398 . C A 0 PASS DP=220;GPV=1;SPV=0.02357;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:88,19:87,18:1,1 +chr2 93879854 . T A 0 PASS DP=27;GPV=1;SPV=0.18803;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:10,2:2,1:8,1 +chr2 93883067 . G C 0 PASS DP=65;GPV=1;SPV=0.036878;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,4:14,5 +chr2 93946886 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 94219398 . C T 0 PASS DP=70;GPV=1;SPV=0.010246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:16,7:9,7 +chr2 94739855 . C T 0 PASS DP=64;GPV=1;SPV=0.026412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1 +chr2 95639887 . G T 0 PASS DP=33;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:3,4:14,3 +chr2 95885787 . C A 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4 +chr2 97166079 . A ATGG 0 PASS DP=54;GPV=1;SPV=0.031714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:5,1:14,5 +chr2 97514685 . A C 0 PASS DP=39;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,1:11,4 +chr2 97667268 . A T 0 PASS DP=37;GPV=1;SPV=0.16725;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:7,2:3,2 +chr2 98635988 . A AAAAAT 0 PASS DP=38;GPV=1;SPV=0.018694;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,2:2,4 +chr2 102260258 . AG A 0 PASS DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3 +chr2 102958716 . G GT 0 PASS DP=65;GPV=1;SPV=0.00021623;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:16,8:6,3 +chr2 103359765 . C T 0 PASS DP=63;GPV=1;SPV=2.1901e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,8:11,6 +chr2 104375468 . C CT 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:3,6:6,3 +chr2 105996608 . G A 0 PASS DP=73;GPV=1;SPV=4.1294e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,8:12,5 +chr2 107095278 . GA G 0 PASS DP=50;GPV=1;SPV=0.00019854;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,5:3,4 +chr2 107904832 . G A 0 PASS DP=85;GPV=1;SPV=0.019667;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:9,7:19,2 +chr2 108122467 . AAAAAAAAAATATATATATATAT A 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1 +chr2 108292393 . AACAC A 0 PASS DP=47;GPV=1;SPV=0.0026559;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:12,6:2,6 +chr2 110049908 . C T 0 PASS DP=99;GPV=1;SPV=0.0075507;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:19,11:20,7 +chr2 110226308 . C T 0 PASS DP=47;GPV=1;SPV=0.00024036;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,3:6,5 +chr2 111506131 . C T 0 PASS DP=72;GPV=1;SPV=0.0081354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,5:9,4 +chr2 111593055 . G A 0 PASS DP=86;GPV=1;SPV=0.04437;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:18,3:17,5 +chr2 112338859 . A G 0 PASS DP=18;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,4:1,1:0,3 +chr2 112373873 . C T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,2:8,2 +chr2 113077537 . T C 0 PASS DP=34;GPV=1;SPV=0.037732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:3,4:5,3 +chr2 113589594 . G T 0 PASS DP=90;GPV=1;SPV=0.020182;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:18,2:19,11 +chr2 114426588 . G A 0 PASS DP=59;GPV=1;SPV=0.00024866;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,1:9,8 +chr2 114812583 . G GACAC 0 PASS DP=53;GPV=1;SPV=0.065377;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:12,4:14,1 +chr2 116463887 . C G 0 PASS DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,2:11,5 +chr2 117407919 . C T 0 PASS DP=20;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2 +chr2 119114640 . G A 0 PASS DP=56;GPV=1;SPV=0.00051776;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,6:8,2 +chr2 119922218 . TAA T 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,6:4,1 +chr2 120142114 . A T 0 PASS DP=35;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:1,2:0,0 +chr2 120142116 . A T 0 PASS DP=33;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,2:0,2:0,0 +chr2 121151724 . A C 0 PASS DP=49;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,2:0,1:2,1 +chr2 121672921 . CA C 0 PASS DP=37;GPV=1;SPV=0.0015417;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr2 121891029 . C CAA 0 PASS DP=26;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,3:2,2 +chr2 124655937 . G GAGAAAGAA 0 PASS DP=36;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:7,3:4,2 +chr2 125894961 . CAT C 0 PASS DP=21;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:1,2:3,2 +chr2 129549054 . C T 0 PASS DP=74;GPV=1;SPV=3.9426e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:16,5:11,11 +chr2 130074871 . C A 0 PASS DP=64;GPV=1;SPV=0.0017104;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,4:7,7 +chr2 131534031 . C T 0 PASS DP=80;GPV=1;SPV=3.584e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:17,6:10,13 +chr2 131709276 . T A 0 PASS DP=54;GPV=1;SPV=0.00057068;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:4,6:15,5 +chr2 132362152 . CAT C 0 PASS DP=161;GPV=1;SPV=0.043085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:57,11:32,6:25,5 +chr2 132362164 . G GC 0 PASS DP=150;GPV=1;SPV=0.03724;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:30,6:26,5 +chr2 133482871 . CTTTT C 0 PASS DP=63;GPV=1;SPV=8.4874e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:9,11:10,6 +chr2 134145214 . C G 0 PASS DP=66;GPV=1;SPV=0.00135;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:13,8:9,8 +chr2 134193675 . T TTGTG 0 PASS DP=28;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:2,5:1,1 +chr2 134516780 . C CATATATATATGCATATATATGAATAT 0 PASS DP=31;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:7,2:9,3 +chr2 135699053 . TA T 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,2:9,3 +chr2 139873820 . ATAT A 0 PASS DP=28;GPV=1;SPV=0.0071795;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr2 140228179 . AAT A 0 PASS DP=27;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,4:2,3:2,1 +chr2 141088021 . T C 0 PASS DP=65;GPV=1;SPV=2.1154e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,9:8,4 +chr2 142448453 . G A 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,6:4,4 +chr2 143680030 . A T 0 PASS DP=38;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1 +chr2 144484185 . T TTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:3,6:4,2 +chr2 145541243 . AT A 0 PASS DP=53;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,4:4,2:6,2 +chr2 145893425 . C CA 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,5:7,1 +chr2 146979198 . AT A 0 PASS DP=43;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:5,7:4,4 +chr2 147397397 . AACATT A 0 PASS DP=62;GPV=1;SPV=0.025662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:11,4:20,3 +chr2 147398202 . CAAA C 0 PASS DP=49;GPV=1;SPV=0.0031585;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,4:5,2 +chr2 149720221 . G T 0 PASS DP=64;GPV=1;SPV=0.0004122;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:9,6:16,7 +chr2 150284846 . CTT C 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr2 151285589 . G GA 0 PASS DP=33;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:5,6:3,1 +chr2 153390112 . C T 0 PASS DP=55;GPV=1;SPV=6.0912e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,7:8,7 +chr2 154216802 . CT C 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr2 155721753 . CAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:3,4:2,1 +chr2 155815260 . G T 0 PASS DP=54;GPV=1;SPV=2.7022e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,5:5,5 +chr2 156256911 . C T 0 PASS DP=73;GPV=1;SPV=0.023554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3 +chr2 156256938 . T C 0 PASS DP=70;GPV=1;SPV=0.037167;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr2 158962657 . C T 0 PASS DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,3:6,4 +chr2 159874193 . TATTGTAA T 0 PASS DP=50;GPV=1;SPV=0.038501;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,5:11,1 +chr2 159874209 . A T 0 PASS DP=49;GPV=1;SPV=0.02545;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,7:5,4:7,3 +chr2 160324880 . G GTATATA 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,4:3,1 +chr2 162820209 . T TTGTGTGTGTGTG 0 PASS DP=23;GPV=1;SPV=0.022136;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,7:1,3:5,4 +chr2 162908321 . C T 0 PASS DP=44;GPV=1;SPV=0.053885;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr2 163934847 . TA T 0 PASS DP=36;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:4,1:4,4 +chr2 164142977 . A T 0 PASS DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3 +chr2 166100056 . G T 0 PASS DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4 +chr2 166414462 . GATAT G 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,4:3,2 +chr2 167590345 . CA C 0 PASS DP=42;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,11:4,7:1,4 +chr2 168897560 . T C 0 PASS DP=36;GPV=1;SPV=0.28347;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:9,1:12,2 +chr2 169327154 . C T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr2 169466284 . T C 0 PASS DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,1:1,3 +chr2 170149646 . T C 0 PASS DP=24;GPV=1;SPV=0.0015602;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,3:1,3 +chr2 170681049 . CA C 0 PASS DP=39;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,13:5,5:2,8 +chr2 171048626 . GAAACCC G 0 PASS DP=44;GPV=1;SPV=0.022974;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3 +chr2 171048633 . A C 0 PASS DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,4:5,2 +chr2 171496401 . A C 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,3:11,1 +chr2 172117902 . T TATATATATATATACAC 0 PASS DP=40;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,9:7,5:5,4 +chr2 172203335 . C CAAA 0 PASS DP=18;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,3:2,2 +chr2 175787160 . G T 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,4:12,5 +chr2 176542107 . GA G 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,3:3,1 +chr2 176656424 . T TTTCCTTCCTTCC 0 PASS DP=28;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:11,3:1,2 +chr2 177019690 . T TATATATATATATATACACAC 0 PASS DP=61;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,7:12,2:8,5 +chr2 179663713 . C CAA 0 PASS DP=31;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr2 184229750 . C T 0 PASS DP=48;GPV=1;SPV=0.0060802;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,5:9,1 +chr2 184448586 . C G 0 PASS DP=57;GPV=1;SPV=0.01309;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:12,3:11,3 +chr2 186242677 . C CT 0 PASS DP=16;GPV=1;SPV=0.0050505;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,7:1,6:0,1 +chr2 188800494 . CAAAAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1 +chr2 189931387 . A T 0 PASS DP=55;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,7:6,6 +chr2 190270282 . A T 0 PASS DP=51;GPV=1;SPV=0.00042977;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,4:6,5 +chr2 192947802 . G A 0 PASS DP=64;GPV=1;SPV=5.1236e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:14,6:9,13 +chr2 194450607 . AAAAAAAAAAAAAAAAAATATATATATATATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,3:6,3 +chr2 196922577 . G GACAC 0 PASS DP=29;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,6:1,1 +chr2 197103228 . A C 0 PASS DP=57;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:3,1:2,1 +chr2 198158230 . A G 0 PASS DP=66;GPV=1;SPV=3.3187e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,7:10,6 +chr2 201561893 . GA G 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,5:6,4 +chr2 203216011 . A T 0 PASS DP=50;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:2,1:1,1 +chr2 207423566 . A T 0 PASS DP=48;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:7,2:4,4 +chr2 207462764 . T TA 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1 +chr2 207818542 . A G 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,6:8,5 +chr2 208157628 . GTT G 0 PASS DP=50;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,3:0,0:2,3 +chr2 208856067 . C CTGATGGTCCTTTAACTGCAGTGTACTT 0 PASS DP=36;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,4:6,4 +chr2 209081372 . C A 0 PASS DP=26;GPV=1;SPV=0.21538;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:8,1:5,2 +chr2 210330336 . G GT 0 PASS DP=31;GPV=1;SPV=0.0031353;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,7:3,3 +chr2 212145727 . TAAAAAAAA T 0 PASS DP=23;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:4,1:2,5 +chr2 212864383 . TTA T 0 PASS DP=65;GPV=1;SPV=0.083654;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:7,2:19,1 +chr2 213030812 . C CT 0 PASS DP=43;GPV=1;SPV=0.012393;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:8,4:4,3 +chr2 213322357 . C A 0 PASS DP=22;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,5:0,3:0,2 +chr2 213608771 . C T 0 PASS DP=72;GPV=1;SPV=9.863e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:11,10:8,6 +chr2 213800335 . T C 0 PASS DP=19;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:0,0:5,2 +chr2 214037864 . G GGTGT 0 PASS DP=29;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1 +chr2 214977880 . C CT 0 PASS DP=47;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:5,4:7,5 +chr2 215786411 . C T 0 PASS DP=56;GPV=1;SPV=1.7296e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,5:4,7 +chr2 219933255 . T A 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,5:3,5 +chr2 220257285 . A G 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,2:0,0 +chr2 224305397 . CT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1 +chr2 224357093 . CAAA C 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,3:4,1 +chr2 224458590 . GTT G 0 PASS DP=42;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:1,5:3,5 +chr2 225204941 . C CTTTCTTTCT 0 PASS DP=43;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:7,3:4,3 +chr2 225655885 . T TACACAC 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr2 225764030 . CT C 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1 +chr2 226318398 . CA C 0 PASS DP=30;GPV=1;SPV=0.0088417;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,2:1,2 +chr2 226354884 . G GT 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr2 227656624 . A G 0 PASS DP=65;GPV=1;SPV=0.025922;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr2 228501713 . G T 0 PASS DP=20;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,4:1,3:0,1 +chr2 228808589 . C A 0 PASS DP=56;GPV=1;SPV=0.00014325;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,5:8,3 +chr2 230119123 . A AT 0 PASS DP=38;GPV=1;SPV=0.18018;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,2:9,1:5,1 +chr2 231725370 . T A 0 PASS DP=50;GPV=1;SPV=0.016206;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,3:0,2:1,1 +chr2 231801630 . C CT 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:6,4:9,1 +chr2 235278477 . C CTT 0 PASS DP=19;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:0,3:2,2 +chr2 235831185 . A T 0 PASS DP=58;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,3:2,2:3,1 +chr2 237307233 . C A 0 PASS DP=46;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:3,1:2,1 +chr2 238086708 . T TAAAAA 0 PASS DP=26;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,5:0,2:1,3 +chr2 238110553 . A T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chr2 240308866 . GTGTCTC G 0 PASS DP=66;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,4:12,3:18,1 +chr2 240411015 . C T 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,5:3,2 +chr2 240976465 . G A 0 PASS DP=57;GPV=1;SPV=0.034164;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,1:7,7 +chr2 241338719 . ATATAT A 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,1:3,6 +chr2 241648688 . G A 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,3:12,2 +chr2 241774683 . TC T 0 PASS DP=73;GPV=1;SPV=0.039485;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,4:13,1 +chr2 241819955 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1 +chr2 242006800 . C T 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,1:7,6 +chr2 242183243 . C G 0 PASS DP=66;GPV=1;SPV=0.017865;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4 +chr20 149164 . G A 0 PASS DP=70;GPV=1;SPV=0.017268;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,1:13,7 +chr20 3635363 . T TAATAAATAAATA 0 PASS DP=40;GPV=1;SPV=0.013238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,6:6,2 +chr20 4231083 . T TC 0 PASS DP=39;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:6,1:11,3 +chr20 4747645 . C T 0 PASS DP=50;GPV=1;SPV=0.0070897;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,3:9,10 +chr20 4985134 . TC T 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3 +chr20 5005000 . A AAAAT 0 PASS DP=53;GPV=1;SPV=0.006682;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:5,5:13,4 +chr20 5250006 . AT A 0 PASS DP=47;GPV=1;SPV=0.0002157;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,4:5,5 +chr20 6425084 . A AAAAAAGAG 0 PASS DP=47;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,8:7,1:7,7 +chr20 6690801 . CAAAAA C 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1 +chr20 7535830 . G A 0 PASS DP=57;GPV=1;SPV=9.0835e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4 +chr20 7680055 . CT C 0 PASS DP=38;GPV=1;SPV=0.0011112;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr20 7815911 . G A 0 PASS DP=78;GPV=1;SPV=2.1927e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:12,6:11,10 +chr20 8556656 . GGT G 0 PASS DP=40;GPV=1;SPV=0.0073495;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,6:6,1 +chr20 8633101 . TACACACACAC T 0 PASS DP=60;GPV=1;SPV=0.00045491;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:14,7:2,7 +chr20 8896268 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:8,6:1,1 +chr20 9879554 . G A 0 PASS DP=36;GPV=1;SPV=0.0091533;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:5,4:1,2 +chr20 10082287 . CA C 0 PASS DP=37;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,7:2,1 +chr20 10891617 . CT C 0 PASS DP=24;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1 +chr20 11374566 . TTA T 0 PASS DP=50;GPV=1;SPV=0.049139;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,1:11,5 +chr20 11854879 . C CA 0 PASS DP=28;GPV=1;SPV=0.0018815;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,5:2,5 +chr20 11859724 . C CATATATATATAT 0 PASS DP=44;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:9,6:4,1 +chr20 12342744 . GA G 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3 +chr20 12681880 . A T 0 PASS DP=61;GPV=1;SPV=0.03842;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,4:9,2 +chr20 13612491 . A AACAC 0 PASS DP=44;GPV=1;SPV=0.0024835;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,5:3,5 +chr20 14071695 . T C 0 PASS DP=67;GPV=1;SPV=4.2509e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:15,5:4,6 +chr20 17479809 . A C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:2,4:4,8 +chr20 17504905 . G GT 0 PASS DP=44;GPV=1;SPV=0.0028667;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,5:8,4 +chr20 20000330 . G T 0 PASS DP=56;GPV=1;SPV=0.0028364;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,4:7,3 +chr20 20000533 . AC A 0 PASS DP=69;GPV=1;SPV=0.0012459;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,3:16,6 +chr20 21353266 . C A 0 PASS DP=21;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:1,1:4,1 +chr20 22762349 . TAGAGAC T 0 PASS DP=34;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,5:1,3:3,2 +chr20 22904023 . A ATTTTTTTT 0 PASS DP=39;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:7,4:7,4 +chr20 24913641 . TG T 0 PASS DP=49;GPV=1;SPV=0.019011;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,2:10,6 +chr20 25472324 . GATATAT G 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,2:0,2 +chr20 25594374 . C CT 0 PASS DP=29;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1 +chr20 25611226 . A T 0 PASS DP=39;GPV=1;SPV=0.026832;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,4:3,1 +chr20 26220241 . C T 0 PASS DP=85;GPV=1;SPV=0.058134;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:24,1:20,4 +chr20 26478052 . C A 0 PASS DP=188;GPV=1;SPV=0.047425;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:75,11:26,8:49,3 +chr20 26568343 . GT G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr20 26568349 . T A 0 PASS DP=25;GPV=1;SPV=0.29565;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:14,3:0,0 +chr20 26697336 . G A 0 PASS DP=198;GPV=1;SPV=0.032344;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,19:39,10:50,9 +chr20 27291338 . C T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr20 28299891 . A C 0 PASS DP=84;GPV=1;SPV=0.048496;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,3:17,6 +chr20 28546561 . T C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:3,1:7,4 +chr20 28636613 . C G 0 PASS DP=114;GPV=1;SPV=0.012643;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:32,9:11,2 +chr20 28638505 . GCCTTGGT G 0 PASS DP=163;GPV=1;SPV=0.0032755;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:64,18:40,8:24,10 +chr20 28804568 . A G 0 PASS DP=192;GPV=1;SPV=0.03277;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:91,19:72,15:19,4 +chr20 29076856 . TG T 0 PASS DP=82;GPV=1;SPV=0.014499;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,4:12,7 +chr20 29105731 . AAT A 0 PASS DP=73;GPV=1;SPV=0.015946;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,5:10,3:15,2 +chr20 29312353 . A C 0 PASS DP=40;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,6:7,2 +chr20 29312389 . AG A 0 PASS DP=38;GPV=1;SPV=0.0005304;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:6,5:4,5 +chr20 29312393 . AAAG A 0 PASS DP=42;GPV=1;SPV=0.018356;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:8,3:5,4 +chr20 29312487 . AAGGG A 0 PASS DP=47;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:14,5:1,3 +chr20 29513081 . G A 0 PASS DP=314;GPV=1;SPV=0.016919;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:134,17:88,13:46,4 +chr20 29877931 . G A 0 PASS DP=306;GPV=1;SPV=0.043172;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:55,12:75,7 +chr20 29880455 . G A 0 PASS DP=461;GPV=1;SPV=0.028207;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:193,33:106,16:87,17 +chr20 30185432 . A G 0 PASS DP=65;GPV=1;SPV=0.027227;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,3:12,6 +chr20 30198474 . T C 0 PASS DP=27;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1 +chr20 30217154 . A G 0 PASS DP=147;GPV=1;SPV=0.043773;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:58,10:32,6:26,4 +chr20 30217160 . A C 0 PASS DP=134;GPV=1;SPV=0.028517;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:30,7:22,4 +chr20 30296138 . C T 0 PASS DP=71;GPV=1;SPV=0.048995;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4 +chr20 30358649 . G A 0 PASS DP=83;GPV=1;SPV=0.024141;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:16,9:18,4 +chr20 30401783 . TTTCTA T 0 PASS DP=138;GPV=1;SPV=0.026485;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:28,3:26,3 +chr20 30638478 . T C 0 PASS DP=127;GPV=1;SPV=0.03661;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:24,2:33,12 +chr20 30674344 . TA T 0 PASS DP=172;GPV=1;SPV=0.039831;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:77,16:37,8:40,8 +chr20 30756951 . G GT 0 PASS DP=66;GPV=1;SPV=0.048775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,1:18,4 +chr20 30815445 . C T 0 PASS DP=232;GPV=1;SPV=0.024294;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:113,20:50,7:63,13 +chr20 30820376 . G A 0 PASS DP=94;GPV=1;SPV=0.017537;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:17,2:21,3 +chr20 30839004 . G T 0 PASS DP=144;GPV=1;SPV=0.01741;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:54,15:32,5:22,10 +chr20 31056505 . TTGGAA T 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:11,4:7,1 +chr20 31058549 . T A 0 PASS DP=109;GPV=1;SPV=0.037815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:24,7:18,6 +chr20 31059753 . C A 0 PASS DP=204;GPV=1;SPV=0.033896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,14:40,7:42,7 +chr20 31061380 . GAATGGAATGT G 0 PASS DP=863;GPV=1;SPV=0.0043696;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:415:368,44:168,18:200,26 +chr20 31063668 . A AGGAAT 0 PASS DP=219;GPV=1;SPV=0.0067066;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,13:52,7:28,6 +chr20 31064863 . T A 0 PASS DP=257;GPV=1;SPV=0.019901;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:102,15:45,8:57,7 +chr20 31069987 . T G 0 PASS DP=151;GPV=1;SPV=0.0013934;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:56,12:38,7:18,5 +chr20 31082413 . G A 0 PASS DP=31;GPV=1;SPV=0.015968;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:9,2:3,9 +chr20 31186507 . G C 0 PASS DP=58;GPV=1;SPV=0.025853;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,3:13,4 +chr20 33329513 . TC T 0 PASS DP=63;GPV=1;SPV=6.0153e-06;SS=2;SSC=52;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,9:7,7 +chr20 33329515 . G T 0 PASS DP=60;GPV=1;SPV=0.001032;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:0,16:0,8:0,8 +chr20 36406397 . CA C 0 PASS DP=43;GPV=1;SPV=0.039259;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1 +chr20 37480584 . C T 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,5:0,1:0,4 +chr20 37614567 . ATATATTTTT A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,6:4,4 +chr20 38209339 . C T 0 PASS DP=69;GPV=1;SPV=4.435e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,5:14,10 +chr20 38379407 . A G 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,1:6,3 +chr20 39238316 . C CA 0 PASS DP=47;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,12:8,7:7,5 +chr20 41000645 . G GAAAATAAAATAAAATAAAAT 0 PASS DP=36;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,12:4,7:3,5 +chr20 41918191 . TTTCC T 0 PASS DP=22;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,6:0,4:0,2 +chr20 42516774 . C G 0 PASS DP=58;GPV=1;SPV=0.00011008;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,5:7,8 +chr20 47184413 . CTT C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:7,6:4,9 +chr20 47255746 . A G 0 PASS DP=17;GPV=1;SPV=0.0090498;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,1:1,4 +chr20 48160689 . T G 0 PASS DP=71;GPV=1;SPV=3.1812e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,25:8,12:12,13 +chr20 48280400 . AT A 0 PASS DP=40;GPV=1;SPV=0.0038123;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:7,4:4,3 +chr20 48514859 . C G 0 PASS DP=133;GPV=1;SPV=0.01884;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:25,7:19,7 +chr20 49132759 . CCAAAA C 0 PASS DP=56;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:8,7:15,5 +chr20 49722846 . A AATAT 0 PASS DP=36;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,3:4,1 +chr20 49972568 . TA T 0 PASS DP=33;GPV=1;SPV=0.0044123;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,3:3,6 +chr20 50162720 . G GACAC 0 PASS DP=57;GPV=1;SPV=0.051458;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chr20 52881023 . T TTC 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,2:16,3 +chr20 52913480 . C CCTCTCTCT 0 PASS DP=23;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1 +chr20 53179221 . C T 0 PASS DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:7,3:10,4 +chr20 54311908 . C A 0 PASS DP=66;GPV=1;SPV=3.2211e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:6,4:12,7 +chr20 55408731 . C T 0 PASS DP=74;GPV=1;SPV=0.00035994;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:16,3:13,9 +chr20 55734036 . G A 0 PASS DP=53;GPV=1;SPV=0.01291;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,6:10,5 +chr20 56705597 . G A 0 PASS DP=83;GPV=1;SPV=0.00062884;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:18,9:16,2 +chr20 58386147 . A ATTT 0 PASS DP=41;GPV=1;SPV=0.0082573;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2 +chr20 60875644 . T TCTTTCTTTCTTTCTTTCTTC 0 PASS DP=44;GPV=1;SPV=0.053977;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:6,3:10,2 +chr20 61202206 . T TG 0 PASS DP=41;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,3:10,1:7,2 +chr20 61214659 . A ATGTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.076601;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:5,5:7,2 +chr20 61340589 . CT C 0 PASS DP=46;GPV=1;SPV=0.0028186;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,6:6,2 +chr20 61868708 . G GTGTCCCCCCACACTGGGCGGA 0 PASS DP=56;GPV=1;SPV=0.015604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,9:6,3:15,6 +chr20 62313988 . AGT A 0 PASS DP=20;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2 +chr21 5216824 . A T 0 PASS DP=266;GPV=1;SPV=0.033361;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:118,15:66,9:52,6 +chr21 5222177 . T A 0 PASS DP=233;GPV=1;SPV=0.0064634;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:81,18:28,8:53,10 +chr21 5235224 . T G 0 PASS DP=454;GPV=1;SPV=0.0030909;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:215,24:88,15:127,9 +chr21 5314304 . C T 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3 +chr21 5367797 . T C 0 PASS DP=30;GPV=1;SPV=0.012914;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,4:3,4 +chr21 6373962 . T A 0 PASS DP=285;GPV=1;SPV=0.019912;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:117,19:73,8:44,11 +chr21 6375346 . T C 0 PASS DP=326;GPV=1;SPV=0.039471;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:156,20:77,4:79,16 +chr21 7209105 . G A 0 PASS DP=39;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:0,1:9,7 +chr21 7222022 . A G 0 PASS DP=96;GPV=1;SPV=0.021295;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:17,2:18,10 +chr21 7225469 . C T 0 PASS DP=84;GPV=1;SPV=0.021579;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:21,3:18,3 +chr21 7284211 . G A 0 PASS DP=89;GPV=1;SPV=0.019625;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:16,1:19,6 +chr21 7307621 . G C 0 PASS DP=105;GPV=1;SPV=0.0019938;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:17,5:21,2 +chr21 7921289 . T C 0 PASS DP=120;GPV=1;SPV=0.028675;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:24,7:26,6 +chr21 7930121 . A G 0 PASS DP=195;GPV=1;SPV=0.046157;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:86,17:45,9:41,8 +chr21 8229974 . C CCT 0 PASS DP=324;GPV=1;SPV=0.017801;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:113,14:19,4:94,10 +chr21 8401672 . A G 0 PASS DP=1680;GPV=1;SPV=0.00098206;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:675:599,76:379,45:220,31 +chr21 8434180 . T C 0 PASS DP=11481;GPV=1;SPV=0.0010525;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:5295:4745,549:2821,341:1924,208 +chr21 8443332 . CT C 0 PASS DP=4328;GPV=1;SPV=0.0030189;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1924:1731,193:144,4:1587,189 +chr21 8447275 . C T 0 PASS DP=28;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:0,0:6,2 +chr21 8465033 . G A 0 PASS DP=1572;GPV=1;SPV=0.0013903;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:536:461,67:211,42:250,25 +chr21 8540814 . A C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr21 8554165 . G GATGAA 0 PASS DP=24;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0 +chr21 8584900 . AAAAG A 0 PASS DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:6,3:14,3 +chr21 8600030 . AATCATCATC A 0 PASS DP=25;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:1,2:0,0 +chr21 8760950 . TATA T 0 PASS DP=267;GPV=1;SPV=0.038391;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:118,18:59,2:59,16 +chr21 8762801 . C T 0 PASS DP=146;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:67,14:34,9:33,5 +chr21 8766588 . G T 0 PASS DP=209;GPV=1;SPV=0.0076057;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:86,20:35,9:51,11 +chr21 8786330 . T TTA 0 PASS DP=303;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:135,17:65,12:70,5 +chr21 8793237 . C T 0 PASS DP=117;GPV=1;SPV=0.025634;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:15,9:21,2 +chr21 8800254 . C T 0 PASS DP=174;GPV=1;SPV=0.033041;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:70,14:37,10:33,4 +chr21 8806881 . CGCGT C 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,3:11,5 +chr21 8839468 . G T 0 PASS DP=87;GPV=1;SPV=0.014375;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:8,5:18,5 +chr21 8839785 . C T 0 PASS DP=169;GPV=1;SPV=0.044078;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:52,6:16,4 +chr21 8840921 . C T 0 PASS DP=319;GPV=1;SPV=0.017205;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:136,19:46,2:90,17 +chr21 8842183 . AC A 0 PASS DP=112;GPV=1;SPV=0.036589;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:17,8:21,4 +chr21 8845410 . A C 0 PASS DP=97;GPV=1;SPV=0.038644;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:10,4:24,4 +chr21 8848326 . G T 0 PASS DP=209;GPV=1;SPV=0.027845;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:102,15:51,4:51,11 +chr21 8851808 . T G 0 PASS DP=369;GPV=1;SPV=0.002886;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:158,35:73,16:85,19 +chr21 8854791 . G A 0 PASS DP=157;GPV=1;SPV=0.0017759;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:11,8:33,7 +chr21 8858689 . T A 0 PASS DP=338;GPV=1;SPV=0.024747;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:153,29:86,9:67,20 +chr21 8879134 . T G 0 PASS DP=448;GPV=1;SPV=0.012621;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:196,24:111,11:85,13 +chr21 8880786 . T G 0 PASS DP=222;GPV=1;SPV=0.008366;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:106,15:41,3:65,12 +chr21 8999488 . A T 0 PASS DP=318;GPV=1;SPV=0.031407;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:138,19:76,7:62,12 +chr21 9004659 . A T 0 PASS DP=149;GPV=1;SPV=0.0011357;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:29,8:24,8 +chr21 9016088 . G C 0 PASS DP=309;GPV=1;SPV=0.017335;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:134,21:73,16:61,5 +chr21 9016237 . A G 0 PASS DP=369;GPV=1;SPV=0.0115;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:153,28:76,15:77,13 +chr21 9026251 . G A 0 PASS DP=312;GPV=1;SPV=0.016619;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:130,23:62,17:68,6 +chr21 9026268 . T C 0 PASS DP=327;GPV=1;SPV=0.013028;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:137,22:65,17:72,5 +chr21 9032681 . C T 0 PASS DP=332;GPV=1;SPV=0.04664;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:146,18:69,11:77,7 +chr21 9050202 . G A 0 PASS DP=111;GPV=1;SPV=0.04952;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:23,6:23,8 +chr21 9064459 . G A 0 PASS DP=273;GPV=1;SPV=0.036768;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:127,16:68,6:59,10 +chr21 9086619 . C T 0 PASS DP=335;GPV=1;SPV=0.026265;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:132,22:73,11:59,11 +chr21 9102967 . T C 0 PASS DP=332;GPV=1;SPV=0.0097214;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:144,17:73,14:71,3 +chr21 9108624 . G A 0 PASS DP=202;GPV=1;SPV=0.031242;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:84,11:46,5:38,6 +chr21 9118263 . G A 0 PASS DP=367;GPV=1;SPV=0.012376;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:156,35:91,23:65,12 +chr21 9118901 . G A 0 PASS DP=406;GPV=1;SPV=0.014637;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:202:170,32:97,18:73,14 +chr21 9121545 . A T 0 PASS DP=263;GPV=1;SPV=0.00068551;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:109,23:50,14:59,9 +chr21 9121963 . C T 0 PASS DP=223;GPV=1;SPV=0.033951;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:92,17:55,10:37,7 +chr21 9131132 . C T 0 PASS DP=454;GPV=1;SPV=0.036715;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:222:196,26:98,9:98,17 +chr21 9132966 . G C 0 PASS DP=412;GPV=1;SPV=0.024501;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:165,26:84,9:81,17 +chr21 9142219 . T A 0 PASS DP=508;GPV=1;SPV=0.024478;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:251:217,34:112,16:105,18 +chr21 9165984 . A G 0 PASS DP=377;GPV=1;SPV=0.0079952;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:111,23:56,13:55,10 +chr21 9167416 . A G 0 PASS DP=357;GPV=1;SPV=0.044098;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:167,22:103,4:64,18 +chr21 9172802 . A G 0 PASS DP=376;GPV=1;SPV=0.013747;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:161,22:100,11:61,11 +chr21 9173280 . T A 0 PASS DP=390;GPV=1;SPV=0.013109;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:168,31:72,11:96,20 +chr21 9174974 . G T 0 PASS DP=258;GPV=1;SPV=0.031092;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:114,17:43,7:71,10 +chr21 9189404 . C T 0 PASS DP=417;GPV=1;SPV=0.043995;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:203:179,24:85,13:94,11 +chr21 9248111 . G T 0 PASS DP=432;GPV=1;SPV=0.033383;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:216:190,26:89,10:101,16 +chr21 9248375 . CAGTGG C 0 PASS DP=350;GPV=1;SPV=0.0208;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:115,25:67,21:48,4 +chr21 9251567 . T C 0 PASS DP=1009;GPV=1;SPV=0.00015531;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:529:455,74:218,39:237,35 +chr21 9254687 . A G 0 PASS DP=489;GPV=1;SPV=0.0030471;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:234:201,33:105,19:96,14 +chr21 9262060 . CTT C 0 PASS DP=248;GPV=1;SPV=0.026434;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:116,14:63,10:53,4 +chr21 9265351 . G GT 0 PASS DP=426;GPV=1;SPV=0.0053784;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:166,33:87,19:79,14 +chr21 9272355 . A G 0 PASS DP=193;GPV=1;SPV=0.022441;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:90,10:37,7:53,3 +chr21 9274547 . A C 0 PASS DP=347;GPV=1;SPV=0.047456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:144,26:110,15:34,11 +chr21 9292728 . C A 0 PASS DP=490;GPV=1;SPV=0.0051027;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:237:196,41:102,22:94,19 +chr21 9296111 . T C 0 PASS DP=282;GPV=1;SPV=0.0071273;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:125,17:43,7:82,10 +chr21 9296276 . G C 0 PASS DP=399;GPV=1;SPV=0.0094903;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:180,29:108,16:72,13 +chr21 9303023 . C T 0 PASS DP=413;GPV=1;SPV=0.031045;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:182,25:96,9:86,16 +chr21 9310548 . A G 0 PASS DP=353;GPV=1;SPV=0.046618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:70,9:71,10 +chr21 9324691 . A C 0 PASS DP=108;GPV=1;SPV=0.049403;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,9:23,3:26,6 +chr21 9330352 . G A 0 PASS DP=266;GPV=1;SPV=0.011472;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,13:57,7:55,6 +chr21 9331411 . G A 0 PASS DP=363;GPV=1;SPV=0.040762;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:154,23:68,11:86,12 +chr21 9342123 . C T 0 PASS DP=415;GPV=1;SPV=0.018889;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:180,26:86,9:94,17 +chr21 9345074 . C T 0 PASS DP=428;GPV=1;SPV=0.00093647;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:201,32:111,23:90,9 +chr21 9348919 . G T 0 PASS DP=335;GPV=1;SPV=0.0015484;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:161,26:80,18:81,8 +chr21 9361283 . G A 0 PASS DP=650;GPV=1;SPV=0.013952;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:333:296,37:135,19:161,18 +chr21 9365190 . T C 0 PASS DP=618;GPV=1;SPV=0.0045248;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:320:269,51:137,36:132,15 +chr21 9365624 . G T 0 PASS DP=588;GPV=1;SPV=0.024203;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:298:261,37:92,17:169,20 +chr21 9556399 . A G 0 PASS DP=139;GPV=1;SPV=0.0091486;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:57,21:29,7:28,14 +chr21 9606113 . G A 0 PASS DP=159;GPV=1;SPV=0.031226;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:68,19:24,6:44,13 +chr21 9628172 . T G 0 PASS DP=154;GPV=1;SPV=0.0069375;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:52,18:26,13:26,5 +chr21 9638268 . G A 0 PASS DP=137;GPV=1;SPV=8.9074e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:27,13:25,2 +chr21 9765488 . A AGTGTAGTGAATGATGGGACAGT 0 PASS DP=110;GPV=1;SPV=0.0041422;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:42,19:21,13:21,6 +chr21 9821495 . G C 0 PASS DP=1275;GPV=1;SPV=0.046842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:607:499,67:285,26:214,41 +chr21 9850023 . A G 0 PASS DP=136;GPV=1;SPV=0.018431;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:27,3:34,5 +chr21 9881159 . T C 0 PASS DP=157;GPV=1;SPV=0.0019529;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:57,22:27,8:30,14 +chr21 9919461 . C A 0 PASS DP=111;GPV=1;SPV=0.039548;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:28,9:24,4 +chr21 9990371 . A C 0 PASS DP=126;GPV=1;SPV=0.020704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:24,4:29,10 +chr21 10021470 . C G 0 PASS DP=143;GPV=1;SPV=0.0040553;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,18:16,6:32,12 +chr21 10080386 . A T 0 PASS DP=156;GPV=1;SPV=0.040884;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:65,17:41,7:24,10 +chr21 10086175 . C T 0 PASS DP=151;GPV=1;SPV=0.0010453;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:54,24:30,14:24,10 +chr21 10097757 . T A 0 PASS DP=136;GPV=1;SPV=0.0084706;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,16:29,12:16,4 +chr21 10151268 . T C 0 PASS DP=140;GPV=1;SPV=0.049348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:59,13:35,8:24,5 +chr21 10272847 . C A 0 PASS DP=51;GPV=1;SPV=0.00045089;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,5:7,6 +chr21 10324728 . T C 0 PASS DP=82;GPV=1;SPV=0.039697;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1 +chr21 10329291 . C T 0 PASS DP=323;GPV=1;SPV=0.016545;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:125,23:53,8:72,15 +chr21 10342477 . C A 0 PASS DP=372;GPV=1;SPV=0.046158;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:166,23:87,8:79,15 +chr21 10361114 . C G 0 PASS DP=593;GPV=1;SPV=0.024432;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:293:254,39:133,18:121,21 +chr21 10365143 . C G 0 PASS DP=88;GPV=1;SPV=0.013531;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:23,4:19,3 +chr21 10392780 . C T 0 PASS DP=183;GPV=1;SPV=0.028575;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:73,14:22,4:51,10 +chr21 10406244 . C T 0 PASS DP=164;GPV=1;SPV=0.0021767;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:76,9:17,2:59,7 +chr21 10415521 . G T 0 PASS DP=381;GPV=1;SPV=0.00088859;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:146,37:72,16:74,21 +chr21 10415652 . G A 0 PASS DP=418;GPV=1;SPV=0.010425;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:163,32:102,22:61,10 +chr21 10417512 . G A 0 PASS DP=629;GPV=1;SPV=0.018643;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:323:275,48:164,25:111,23 +chr21 10419095 . G A 0 PASS DP=598;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:260,36:116,20:144,16 +chr21 10420063 . G T 0 PASS DP=237;GPV=1;SPV=0.0094397;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:98,25:40,12:58,13 +chr21 10422931 . G GT 0 PASS DP=263;GPV=1;SPV=0.049712;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:105,13:71,9:34,4 +chr21 10425535 . G A 0 PASS DP=585;GPV=1;SPV=0.025935;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:302:264,38:133,18:131,20 +chr21 10429776 . A G 0 PASS DP=602;GPV=1;SPV=0.049364;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:263,37:128,21:135,16 +chr21 10430637 . C T 0 PASS DP=471;GPV=1;SPV=0.005776;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:201,30:102,15:99,15 +chr21 10437112 . A G 0 PASS DP=393;GPV=1;SPV=0.046443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:173,27:68,8:105,19 +chr21 10445465 . T A 0 PASS DP=130;GPV=1;SPV=0.048543;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:61,9:29,7:32,2 +chr21 10449982 . C G 0 PASS DP=302;GPV=1;SPV=0.018207;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:115,24:59,7:56,17 +chr21 10449987 . TATTTC T 0 PASS DP=316;GPV=1;SPV=0.037054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:127,19:68,5:59,14 +chr21 10451024 . A C 0 PASS DP=406;GPV=1;SPV=0.02949;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:161,25:73,8:88,17 +chr21 10461146 . T C 0 PASS DP=344;GPV=1;SPV=0.020052;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:143,25:75,14:68,11 +chr21 10462629 . C T 0 PASS DP=385;GPV=1;SPV=0.014232;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:158,35:74,16:84,19 +chr21 10464875 . G A 0 PASS DP=412;GPV=1;SPV=0.015602;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:179,36:80,20:99,16 +chr21 10467788 . C G 0 PASS DP=398;GPV=1;SPV=0.0066795;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:156,25:84,10:72,15 +chr21 10475546 . C T 0 PASS DP=307;GPV=1;SPV=0.025186;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:54,8:76,11 +chr21 10583185 . C A 0 PASS DP=151;GPV=1;SPV=1.6182e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:54,16:32,10:22,6 +chr21 10665385 . A G 0 PASS DP=127;GPV=1;SPV=0.021267;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:26,7:25,8 +chr21 10693311 . C A 0 PASS DP=127;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:20,7:25,5 +chr21 10744491 . C G 0 PASS DP=99;GPV=1;SPV=0.0060775;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:25,4:21,4 +chr21 10745524 . G A 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,3:0,1 +chr21 10806728 . G A 0 PASS DP=353;GPV=1;SPV=0.015258;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:161,19:79,9:82,10 +chr21 13282962 . T C 0 PASS DP=61;GPV=1;SPV=0.046772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,4:14,1 +chr21 13330523 . TTATCTATC T 0 PASS DP=19;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,2:3,4 +chr21 13352710 . G T 0 PASS DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,7:3,3 +chr21 13432290 . T G 0 PASS DP=65;GPV=1;SPV=0.029835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:12,5:14,2 +chr21 13524811 . T C 0 PASS DP=64;GPV=1;SPV=0.031128;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:14,1:14,4 +chr21 13530697 . G T 0 PASS DP=78;GPV=1;SPV=0.046744;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,5:15,4 +chr21 18194603 . TA T 0 PASS DP=65;GPV=1;SPV=9.7744e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5 +chr21 19227218 . A C 0 PASS DP=56;GPV=1;SPV=0.047782;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2 +chr21 20508555 . T G 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3 +chr21 21994806 . A G 0 PASS DP=42;GPV=1;SPV=0.16587;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,5:7,4:4,1 +chr21 23072541 . CTT C 0 PASS DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,3:1,1 +chr21 23219743 . A T 0 PASS DP=64;GPV=1;SPV=2.6336e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,2:5,10 +chr21 23685848 . G A 0 PASS DP=60;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:15,5:15,1 +chr21 24811016 . G T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,8:12,3 +chr21 25655350 . A AT 0 PASS DP=40;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,3:5,3 +chr21 26062230 . A AAC 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1 +chr21 27240865 . G A 0 PASS DP=66;GPV=1;SPV=0.00026636;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,7:11,4 +chr21 27257780 . T A 0 PASS DP=66;GPV=1;SPV=0.00075779;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,5:12,4 +chr21 27940507 . CTGTG C 0 PASS DP=40;GPV=1;SPV=0.0092633;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,6:3,3 +chr21 28413998 . T TC 0 PASS DP=28;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:2,1:3,5 +chr21 28831522 . AGAAG A 0 PASS DP=37;GPV=1;SPV=0.030571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2 +chr21 30571058 . T G 0 PASS DP=85;GPV=1;SPV=0.015937;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,3:15,5 +chr21 31941311 . T C 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,2:9,3 +chr21 32481509 . G GA 0 PASS DP=20;GPV=1;SPV=0.004816;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,4:0,1 +chr21 33237082 . T G 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,3:9,4 +chr21 33337714 . TATAC T 0 PASS DP=48;GPV=1;SPV=0.015793;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3 +chr21 34671143 . G A 0 PASS DP=33;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,3:2,2:2,1 +chr21 34787254 . C A 0 PASS DP=57;GPV=1;SPV=0.00019352;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,5:7,3 +chr21 35526972 . CA C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr21 35704576 . GAGAA G 0 PASS DP=17;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:2,3:1,2 +chr21 35960240 . CTCTCTA C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2 +chr21 36176106 . G A 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,2:8,5 +chr21 37004264 . G A 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,2:3,2 +chr21 37033999 . C T 0 PASS DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chr21 37389925 . G GT 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,5:6,2 +chr21 39177130 . T A 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8 +chr21 39245602 . T G 0 PASS DP=63;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,2:2,1:2,1 +chr21 39378669 . T C 0 PASS DP=41;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,1:1,1 +chr21 39715048 . CT C 0 PASS DP=54;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,2:0,0:0,2 +chr21 39819608 . TCTATC T 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2 +chr21 39953826 . C CT 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr21 40898219 . T G 0 PASS DP=54;GPV=1;SPV=0.0052114;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,3:7,3 +chr21 42840044 . A G 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,3:5,3 +chr21 44863127 . G GAC 0 PASS DP=65;GPV=1;SPV=0.043229;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,6:16,5:14,1 +chr21 44972960 . G A 0 PASS DP=64;GPV=1;SPV=0.029276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:11,4:12,2 +chr21 44973001 . G A 0 PASS DP=62;GPV=1;SPV=0.0041395;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,5:12,2 +chr21 45902313 . G A 0 PASS DP=30;GPV=1;SPV=0.0076628;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr21 46294304 . G A 0 PASS DP=49;GPV=1;SPV=0.015045;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,2:2,4 +chr22 10547332 . T A 0 PASS DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr22 10550830 . A C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0 +chr22 10709382 . CT C 0 PASS DP=366;GPV=1;SPV=0.023069;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:167,29:97,14:70,15 +chr22 10753801 . A G 0 PASS DP=320;GPV=1;SPV=0.04636;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:140,23:64,12:76,11 +chr22 10754578 . A G 0 PASS DP=386;GPV=1;SPV=0.04514;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:164,27:62,5:102,22 +chr22 10761243 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:6,4:4,4 +chr22 10765275 . G A 0 PASS DP=178;GPV=1;SPV=0.018029;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:18,9:42,7 +chr22 10780040 . A C 0 PASS DP=296;GPV=1;SPV=0.011605;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:120,27:71,14:49,13 +chr22 11027060 . A G 0 PASS DP=315;GPV=1;SPV=0.045494;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:135,19:86,9:49,10 +chr22 11338143 . C T 0 PASS DP=218;GPV=1;SPV=0.04179;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:103,22:55,13:48,9 +chr22 11348943 . A C 0 PASS DP=160;GPV=1;SPV=0.039295;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:70,12:29,7:41,5 +chr22 11477170 . C T 0 PASS DP=184;GPV=1;SPV=0.041719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:66,15:33,9:33,6 +chr22 11696409 . A G 0 PASS DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:2,1:12,6 +chr22 11704981 . T A 0 PASS DP=88;GPV=1;SPV=0.03093;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,7:25,6:9,1 +chr22 11710948 . A G 0 PASS DP=132;GPV=1;SPV=0.019466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:36,11:17,4 +chr22 11801203 . C G 0 PASS DP=148;GPV=1;SPV=0.045184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:37,9:21,6 +chr22 11808059 . T C 0 PASS DP=227;GPV=1;SPV=0.039916;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:96,19:56,10:40,9 +chr22 11854158 . TA T 0 PASS DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,2:5,6 +chr22 11863430 . G C 0 PASS DP=118;GPV=1;SPV=0.026088;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:16,3:24,8 +chr22 11870867 . T C 0 PASS DP=136;GPV=1;SPV=0.0070634;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:53,17:34,15:19,2 +chr22 11871871 . T A 0 PASS DP=685;GPV=1;SPV=0.032896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:347:311,36:178,18:133,18 +chr22 11874817 . T C 0 PASS DP=324;GPV=1;SPV=0.025014;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:145,19:93,8:52,11 +chr22 11912157 . G T 0 PASS DP=191;GPV=1;SPV=0.034312;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:38,11:39,8 +chr22 11912224 . C T 0 PASS DP=193;GPV=1;SPV=0.042527;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:34,8:45,7 +chr22 11913684 . G A 0 PASS DP=363;GPV=1;SPV=0.035839;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:140,28:45,9:95,19 +chr22 11914787 . T C 0 PASS DP=411;GPV=1;SPV=0.046627;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:183,29:109,15:74,14 +chr22 11917800 . A G 0 PASS DP=585;GPV=1;SPV=0.029142;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:297:258,39:118,20:140,19 +chr22 11940484 . T C 0 PASS DP=101;GPV=1;SPV=0.011798;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:26,2:22,5 +chr22 11942962 . CA C 0 PASS DP=129;GPV=1;SPV=0.0055173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:47,12:33,10:14,2 +chr22 11972802 . G A 0 PASS DP=142;GPV=1;SPV=0.0050678;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:50,19:27,9:23,10 +chr22 11974475 . C A 0 PASS DP=178;GPV=1;SPV=0.037788;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:13,5:51,5 +chr22 12036085 . C A 0 PASS DP=334;GPV=1;SPV=0.0045758;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:141,18:61,11:80,7 +chr22 12060744 . A G 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:2,2:14,4 +chr22 12112120 . G T 0 PASS DP=150;GPV=1;SPV=0.029151;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:28,6:30,10 +chr22 12119341 . A C 0 PASS DP=142;GPV=1;SPV=0.0067648;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:30,2:22,13 +chr22 12154648 . C A 0 PASS DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,2:22,4 +chr22 12166049 . G A 0 PASS DP=66;GPV=1;SPV=0.028904;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:14,5:4,2 +chr22 12193191 . G T 0 PASS DP=189;GPV=1;SPV=0.0023926;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:50,8:24,12 +chr22 12193684 . A G 0 PASS DP=218;GPV=1;SPV=0.047103;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:108,16:53,7:55,9 +chr22 12199201 . A C 0 PASS DP=333;GPV=1;SPV=0.015491;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:130,19:55,11:75,8 +chr22 12200388 . G A 0 PASS DP=344;GPV=1;SPV=0.014258;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:152,20:76,9:76,11 +chr22 12209191 . T G 0 PASS DP=157;GPV=1;SPV=0.0033214;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:30,8:25,9 +chr22 12218039 . C T 0 PASS DP=89;GPV=1;SPV=0.012776;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:25,5:15,9 +chr22 12218817 . TTATTTA T 0 PASS DP=161;GPV=1;SPV=0.0064636;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:67,21:42,16:25,5 +chr22 12295505 . A G 0 PASS DP=129;GPV=1;SPV=0.033746;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:23,1:40,7 +chr22 12315376 . A AG 0 PASS DP=60;GPV=1;SPV=0.0562;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2 +chr22 12315438 . A G 0 PASS DP=80;GPV=1;SPV=0.0096691;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:24,8:6,6 +chr22 12362977 . A G 0 PASS DP=183;GPV=1;SPV=0.04804;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:83,10:50,6:33,4 +chr22 12368037 . G A 0 PASS DP=121;GPV=1;SPV=0.038911;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:23,5:23,9 +chr22 12421244 . TA T 0 PASS DP=166;GPV=1;SPV=0.011472;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:39,4:31,6 +chr22 12559389 . TG T 0 PASS DP=198;GPV=1;SPV=0.047491;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:32,6:39,7 +chr22 12619844 . C T 0 PASS DP=139;GPV=1;SPV=0.014369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:32,10:31,4 +chr22 12637781 . TAAG T 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chr22 12703951 . G T 0 PASS DP=193;GPV=1;SPV=0.048991;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:83,18:50,12:33,6 +chr22 12709021 . A C 0 PASS DP=217;GPV=1;SPV=0.018392;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:94,11:55,6:39,5 +chr22 12720922 . C G 0 PASS DP=193;GPV=1;SPV=0.038263;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:75,14:31,9:44,5 +chr22 12721011 . A G 0 PASS DP=279;GPV=1;SPV=0.044359;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:105,21:41,9:64,12 +chr22 12787768 . C A 0 PASS DP=51;GPV=1;SPV=0.044641;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,4:10,1 +chr22 12804136 . T A 0 PASS DP=70;GPV=1;SPV=0.048003;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,4:10,1 +chr22 12811984 . A C 0 PASS DP=176;GPV=1;SPV=0.019622;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:66,19:28,10:38,9 +chr22 12871086 . C G 0 PASS DP=208;GPV=1;SPV=0.043857;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:78,14:51,7:27,7 +chr22 12875723 . T A 0 PASS DP=299;GPV=1;SPV=0.0087155;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:111,27:30,14:81,13 +chr22 12879835 . G A 0 PASS DP=150;GPV=1;SPV=0.01238;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:47,8:24,11 +chr22 12889651 . G A 0 PASS DP=234;GPV=1;SPV=0.047833;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:101,12:71,10:30,2 +chr22 12891489 . C T 0 PASS DP=181;GPV=1;SPV=0.04238;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:73,10:42,6:31,4 +chr22 13533510 . G C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 15220225 . C T 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1 +chr22 15480387 . G A 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1 +chr22 15562148 . A G 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,3:0,1 +chr22 15748494 . C A 0 PASS DP=102;GPV=1;SPV=0.042235;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:24,6:18,4 +chr22 15752140 . T A 0 PASS DP=39;GPV=1;SPV=0.044153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,3:5,2 +chr22 15787648 . TTG T 0 PASS DP=102;GPV=1;SPV=0.033621;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:14,5:29,9 +chr22 15815076 . C G 0 PASS DP=110;GPV=1;SPV=0.049247;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:25,5:22,5 +chr22 15837952 . T TTTCTTTCTTTC 0 PASS DP=101;GPV=1;SPV=0.026661;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,5:19,2:25,3 +chr22 15856012 . T C 0 PASS DP=105;GPV=1;SPV=0.011448;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:22,6:16,7 +chr22 15881643 . G T 0 PASS DP=23;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr22 16164202 . CT C 0 PASS DP=42;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,6:2,3 +chr22 16416347 . T G 0 PASS DP=77;GPV=1;SPV=0.044716;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,3:13,4 +chr22 16431788 . A AT 0 PASS DP=72;GPV=1;SPV=0.0025099;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:11,11:13,6 +chr22 16434619 . A T 0 PASS DP=82;GPV=1;SPV=0.011955;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:18,5:14,3 +chr22 16450533 . C T 0 PASS DP=144;GPV=1;SPV=0.038122;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:52,12:25,8:27,4 +chr22 17178722 . A AGAGTGAT 0 PASS DP=28;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,3:3,4 +chr22 17343151 . G GT 0 PASS DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2 +chr22 17605694 . T TC 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,7:4,1 +chr22 17626325 . A AAAAG 0 PASS DP=35;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,8:2,1:0,7 +chr22 18125513 . C CA 0 PASS DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1 +chr22 18188614 . A T 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,2:5,3 +chr22 18234348 . A C 0 PASS DP=76;GPV=1;SPV=0.051478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,1:18,3 +chr22 18363031 . G GA 0 PASS DP=79;GPV=1;SPV=0.012473;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:13,4:20,5 +chr22 18846304 . A C 0 PASS DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,2:3,4 +chr22 18982721 . C CAAA 0 PASS DP=22;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,5:0,4:1,1 +chr22 20164469 . C T 0 PASS DP=53;GPV=1;SPV=0.035289;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,3:6,3 +chr22 20341553 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1 +chr22 20343677 . G A 0 PASS DP=111;GPV=1;SPV=0.0022919;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:21,10:23,7 +chr22 21135936 . G A 0 PASS DP=122;GPV=1;SPV=0.011147;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:30,3:23,3 +chr22 21166611 . G T 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr22 21166864 . A T 0 PASS DP=35;GPV=1;SPV=0.0017012;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,3:6,4 +chr22 21170330 . G C 0 PASS DP=22;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,1:4,5 +chr22 21313803 . G A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,4:1,0 +chr22 21335516 . C G 0 PASS DP=63;GPV=1;SPV=0.024638;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,6:11,3 +chr22 21789843 . T TATAACATAACATAACATAAC 0 PASS DP=47;GPV=1;SPV=0.040169;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,1:9,3 +chr22 22517876 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2 +chr22 23331669 . A AATTATTATT 0 PASS DP=35;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,7:0,4:5,3 +chr22 23855210 . C T 0 PASS DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:2,2:4,1 +chr22 26451996 . G A 0 PASS DP=36;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,2:0,1:6,1 +chr22 29159124 . G GT 0 PASS DP=25;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr22 29402766 . G T 0 PASS DP=48;GPV=1;SPV=0.012187;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,2:3,6 +chr22 29535261 . C CA 0 PASS DP=23;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,6:2,1 +chr22 30076606 . C T 0 PASS DP=77;GPV=1;SPV=4.4205e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,6:11,7 +chr22 30308332 . A C 0 PASS DP=70;GPV=1;SPV=0.044913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,8:15,1 +chr22 32505862 . T C 0 PASS DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5 +chr22 32799358 . G A 0 PASS DP=56;GPV=1;SPV=0.0038291;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,4:9,3 +chr22 33201344 . A G 0 PASS DP=41;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,5:7,3:6,2 +chr22 33282639 . C T 0 PASS DP=75;GPV=1;SPV=0.00017455;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,6:15,5 +chr22 33403962 . T A 0 PASS DP=52;GPV=1;SPV=0.0014018;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,3:12,8 +chr22 35694644 . T C 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,4:11,2 +chr22 39018818 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1 +chr22 41132286 . CT C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,4:3,1 +chr22 41167560 . TTGTGTGTG T 0 PASS DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,4:6,2 +chr22 41194019 . A G 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,2:1,4 +chr22 42666228 . CA C 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr22 44284901 . T G 0 PASS DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,3:14,2 +chr22 45182623 . G GT 0 PASS DP=35;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:3,5:0,1 +chr22 47493701 . G A 0 PASS DP=63;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,7:9,4 +chr22 49072416 . A AAAAAGAAG 0 PASS DP=30;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,4:3,3:2,1 +chr22 50021649 . T C 0 PASS DP=25;GPV=1;SPV=0.0099771;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,6:2,1 +chr3 1119322 . C CGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1 +chr3 1170236 . C CA 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,6:3,1 +chr3 1210426 . A G 0 PASS DP=46;GPV=1;SPV=0.029963;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:12,5:3,5 +chr3 1348241 . A G 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,4:6,4 +chr3 2226518 . AATT A 0 PASS DP=49;GPV=1;SPV=7.6384e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,9:6,4 +chr3 2520259 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,2:0,2 +chr3 3339466 . G T 0 PASS DP=25;GPV=1;SPV=0.062937;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1 +chr3 3762779 . A T 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,3:8,3 +chr3 5306469 . ATGTG A 0 PASS DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3 +chr3 8831343 . A G 0 PASS DP=37;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:3,4:0,1 +chr3 9972462 . GAAA G 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1 +chr3 11294017 . CA C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2 +chr3 12221298 . CTT C 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1 +chr3 14738817 . T A 0 PASS DP=38;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:7,2:4,3 +chr3 16633137 . C CA 0 PASS DP=36;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:1,4:2,2 +chr3 18846669 . G GT 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr3 19293817 . G A 0 PASS DP=56;GPV=1;SPV=0.0040349;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:12,6:13,5 +chr3 20018690 . C T 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2 +chr3 20312112 . A C 0 PASS DP=46;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,2:2,1:5,1 +chr3 20356709 . A T 0 PASS DP=57;GPV=1;SPV=0.00069576;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,2:12,8 +chr3 20595413 . G T 0 PASS DP=69;GPV=1;SPV=9.2171e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,8:10,5 +chr3 21148171 . A C 0 PASS DP=18;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:3,1:1,2 +chr3 21193894 . C T 0 PASS DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,6:13,3 +chr3 22380646 . G GGTGTGTGTGT 0 PASS DP=52;GPV=1;SPV=0.0068755;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6 +chr3 22541727 . ATATATGTG A 0 PASS DP=37;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:7,4:6,1 +chr3 22541750 . CATATATATGTGTACAT C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr3 22813731 . CT C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,4:1,3 +chr3 23196721 . T A 0 PASS DP=55;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,1:0,1 +chr3 23842245 . GT G 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3 +chr3 25785136 . A C 0 PASS DP=31;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,1:0,1 +chr3 27204305 . T TTTG 0 PASS DP=23;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2 +chr3 27884071 . GAT G 0 PASS DP=30;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,2:6,1 +chr3 28255241 . C CT 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2 +chr3 28649287 . G A 0 PASS DP=49;GPV=1;SPV=0.017646;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2 +chr3 29475379 . G T 0 PASS DP=50;GPV=1;SPV=0.0033004;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:8,6:7,9 +chr3 30034589 . AAAGGAAGGAAGGAAGG A 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr3 32249030 . CTTTTTTTT C 0 PASS DP=17;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:1,2:1,2 +chr3 32721647 . CT C 0 PASS DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,4:2,2 +chr3 35253133 . T G 0 PASS DP=58;GPV=1;SPV=0.0033254;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,4:9,2 +chr3 35305121 . A G 0 PASS DP=54;GPV=1;SPV=0.030376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:18,2:9,5 +chr3 36104907 . C A 0 PASS DP=39;GPV=1;SPV=0.020196;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr3 36183915 . C CT 0 PASS DP=39;GPV=1;SPV=0.016738;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,10:4,2 +chr3 36346943 . AG A 0 PASS DP=36;GPV=1;SPV=0.00077087;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,3:5,4 +chr3 36515975 . CT C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,4:2,3 +chr3 40846033 . C CAG 0 PASS DP=39;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:8,2:6,3 +chr3 42349199 . T TTC 0 PASS DP=37;GPV=1;SPV=0.0070739;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:2,3:8,5 +chr3 42349200 . C T 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:2,4:10,6 +chr3 42743587 . T TTATATATATATATATATATATA 0 PASS DP=35;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:4,4:5,1 +chr3 44723874 . G T 0 PASS DP=49;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,5:1,2:2,3 +chr3 45415897 . A G 0 PASS DP=31;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,4:1,2:0,2 +chr3 45569952 . CT C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,2:7,2 +chr3 46372541 . A G 0 PASS DP=65;GPV=1;SPV=0.039302;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,3:15,2 +chr3 46441899 . CAGAGAG C 0 PASS DP=38;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,2:7,2 +chr3 46507138 . C CATT 0 PASS DP=44;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,3:10,6 +chr3 50281670 . A AT 0 PASS DP=23;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1 +chr3 52718472 . CAA C 0 PASS DP=23;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1 +chr3 53221115 . CTTTTT C 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:3,4:0,2 +chr3 54060178 . C CA 0 PASS DP=28;GPV=1;SPV=0.0070234;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,4:3,1 +chr3 54226312 . C CTT 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1 +chr3 55222209 . G T 0 PASS DP=60;GPV=1;SPV=0.032887;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:7,4:17,3 +chr3 55675960 . G A 0 PASS DP=41;GPV=1;SPV=0.0014155;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr3 57054643 . AT A 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3 +chr3 57427113 . ATATT A 0 PASS DP=39;GPV=1;SPV=0.0052761;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:6,6:5,4 +chr3 57754987 . C CTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1 +chr3 58003748 . C A 0 PASS DP=42;GPV=1;SPV=0.015516;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3 +chr3 60895665 . CCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,2:7,4 +chr3 61900879 . T C 0 PASS DP=53;GPV=1;SPV=9.0511e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,8:6,7 +chr3 62926096 . GAA G 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1 +chr3 63112336 . T A 0 PASS DP=69;GPV=1;SPV=9.0035e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:11,6:9,8 +chr3 64451256 . C CAGAGAGAGAG 0 PASS DP=24;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:2,3:1,3 +chr3 64670139 . A T 0 PASS DP=48;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,4:4,3:7,1 +chr3 65132927 . GA G 0 PASS DP=33;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:4,2:7,2 +chr3 65346987 . T A 0 PASS DP=73;GPV=1;SPV=7.1534e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:11,9:12,7 +chr3 67350128 . G GTTTT 0 PASS DP=52;GPV=1;SPV=0.00056247;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,9:9,3 +chr3 68021185 . C CAA 0 PASS DP=28;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:7,3:4,1 +chr3 68545006 . C T 0 PASS DP=50;GPV=1;SPV=0.0007761;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2 +chr3 70336814 . T TTGTG 0 PASS DP=33;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,4:3,1 +chr3 73203639 . TA T 0 PASS DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:10,2:17,3 +chr3 74391557 . CT C 0 PASS DP=30;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:5,5:2,1 +chr3 74711393 . C T 0 PASS DP=48;GPV=1;SPV=0.0012182;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,3:3,6 +chr3 75446337 . C T 0 PASS DP=40;GPV=1;SPV=0.079329;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:8,5:2,1 +chr3 75646619 . G A 0 PASS DP=236;GPV=1;SPV=0.020742;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:109,16:54,7:55,9 +chr3 75825024 . G A 0 PASS DP=151;GPV=1;SPV=0.042449;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,10:33,1:21,9 +chr3 76427003 . A G 0 PASS DP=59;GPV=1;SPV=0.0039305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,2:11,4 +chr3 77039673 . T A 0 PASS DP=63;GPV=1;SPV=3.0271e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:6,4:9,15 +chr3 77135567 . AT A 0 PASS DP=49;GPV=1;SPV=0.00070906;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,6:4,2 +chr3 77323048 . ATATAATATAT A 0 PASS DP=69;GPV=1;SPV=0.068138;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,3:13,1 +chr3 78251357 . C T 0 PASS DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,3:10,7 +chr3 78310783 . GA G 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:12,5:2,1 +chr3 78311905 . CA C 0 PASS DP=41;GPV=1;SPV=0.0034481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3 +chr3 78941630 . C T 0 PASS DP=53;GPV=1;SPV=0.000461;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,4:12,5 +chr3 79519628 . C CAAA 0 PASS DP=23;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:3,3:4,1 +chr3 79675075 . A T 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr3 79675076 . T A 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2 +chr3 80594472 . G A 0 PASS DP=69;GPV=1;SPV=9.9796e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,5:6,10 +chr3 82214511 . CGT C 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2 +chr3 82915520 . A AAT 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2 +chr3 83084765 . CTT C 0 PASS DP=41;GPV=1;SPV=0.00081261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,8:3,7 +chr3 83418140 . G A 0 PASS DP=60;GPV=1;SPV=0.00011093;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,6:10,7 +chr3 83907471 . ATTTTT A 0 PASS DP=26;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,2:2,4 +chr3 83919255 . AT A 0 PASS DP=43;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,1:7,3 +chr3 84517268 . TTATATATATATATATATATATATATATA T 0 PASS DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,2:2,3 +chr3 84949434 . G C 0 PASS DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,4:9,2 +chr3 85269986 . A T 0 PASS DP=60;GPV=1;SPV=0.00021136;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,7:8,2 +chr3 85515617 . A G 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,2:4,2 +chr3 85651984 . C CTTTTTTTTTTT 0 PASS DP=34;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:8,7:5,1 +chr3 89136384 . G GA 0 PASS DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,2:2,3 +chr3 89316505 . A AATAT 0 PASS DP=20;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:2,4:0,1 +chr3 89411165 . CT C 0 PASS DP=50;GPV=1;SPV=0.0040439;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,3:7,2 +chr3 89778644 . GTT G 0 PASS DP=29;GPV=1;SPV=0.07827;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:7,1:3,2 +chr3 90555751 . G A 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,1:2,4 +chr3 90795678 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr3 90795679 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr3 90796078 . C T 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,2:0,2 +chr3 90798071 . G T 0 PASS DP=777;GPV=1;SPV=0.014721;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:366:321,42:193,22:128,20 +chr3 90806513 . G T 0 PASS DP=37;GPV=1;SPV=0.16089;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:17,2:3,2 +chr3 90806570 . G T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr3 90824580 . G T 0 PASS DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:36,4:0,0 +chr3 90880190 . C T 0 PASS DP=130;GPV=1;SPV=0.03135;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:32,10:15,3 +chr3 90892203 . G T 0 PASS DP=24;GPV=1;SPV=0.0059289;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,3:3,2 +chr3 90946611 . A T 0 PASS DP=80;GPV=1;SPV=0.046434;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:6,1:27,10 +chr3 90979496 . A G 0 PASS DP=62;GPV=1;SPV=0.042576;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:1,0:24,4 +chr3 91022659 . C A 0 PASS DP=103;GPV=1;SPV=0.047794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:3,2:33,4 +chr3 91029637 . A G 0 PASS DP=138;GPV=1;SPV=0.038605;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,9:45,6:9,3 +chr3 91063281 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1 +chr3 91091786 . G T 0 PASS DP=121;GPV=1;SPV=0.008448;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:6,4:44,2 +chr3 91141897 . T A 0 PASS DP=30;GPV=1;SPV=0.0056194;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:1,1:8,6 +chr3 91177837 . T G 0 PASS DP=253;GPV=1;SPV=0.015911;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:94,13:89,12:5,1 +chr3 91205533 . C T 0 PASS DP=85;GPV=1;SPV=0.029092;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,0:32,4 +chr3 91218372 . T C 0 PASS DP=72;GPV=1;SPV=0.064197;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:6,1:27,3 +chr3 93591170 . G C 0 PASS DP=224;GPV=1;SPV=0.013747;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:104,13:100,12:4,1 +chr3 93591186 . CT C 0 PASS DP=241;GPV=1;SPV=0.028852;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:116,14:112,13:4,1 +chr3 94936374 . C A 0 PASS DP=49;GPV=1;SPV=0.0011874;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,5:11,6 +chr3 95784347 . A G 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:5,4:0,1 +chr3 96171183 . GA G 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,3:12,2 +chr3 96518048 . T A 0 PASS DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:12,7:14,6 +chr3 96983705 . T C 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,5:12,2 +chr3 97879569 . C T 0 PASS DP=59;GPV=1;SPV=1.6767e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,9:9,4 +chr3 98427377 . TGTGAGA T 0 PASS DP=27;GPV=1;SPV=0.076651;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2 +chr3 100854188 . T TA 0 PASS DP=48;GPV=1;SPV=0.012535;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:10,1:8,5 +chr3 101431508 . CT C 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr3 101440054 . A G 0 PASS DP=59;GPV=1;SPV=0.020048;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,4:7,4 +chr3 101930935 . A C 0 PASS DP=57;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:7,3:7,1 +chr3 103975233 . CA C 0 PASS DP=44;GPV=1;SPV=0.00013031;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,8:3,1 +chr3 106534734 . C A 0 PASS DP=66;GPV=1;SPV=0.0013735;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,5:11,3 +chr3 106542761 . TA T 0 PASS DP=55;GPV=1;SPV=0.00026263;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3 +chr3 106775348 . T C 0 PASS DP=72;GPV=1;SPV=0.057257;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr3 106775349 . G A 0 PASS DP=79;GPV=1;SPV=0.029196;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,3:17,2 +chr3 108173766 . CTGTG C 0 PASS DP=37;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:7,4:1,4 +chr3 108958612 . T A 0 PASS DP=61;GPV=1;SPV=5.7534e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,8:6,8 +chr3 109529342 . G GT 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,2:6,4 +chr3 109529360 . G C 0 PASS DP=42;GPV=1;SPV=0.0052475;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,2:7,4 +chr3 109963081 . GT G 0 PASS DP=33;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3 +chr3 110129439 . G A 0 PASS DP=51;GPV=1;SPV=0.00017742;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,7:6,8 +chr3 112261530 . A G 0 PASS DP=72;GPV=1;SPV=9.4663e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,6:16,5 +chr3 113826339 . TACAC T 0 PASS DP=53;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:7,8:0,2 +chr3 113935487 . AAT A 0 PASS DP=42;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,6:8,2 +chr3 115698281 . AAATATAAT A 0 PASS DP=17;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:3,1:1,1 +chr3 115698297 . T A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr3 115736864 . C CT 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr3 115895057 . A G 0 PASS DP=53;GPV=1;SPV=0.00029504;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6 +chr3 116119672 . T C 0 PASS DP=49;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,6:9,5:5,1 +chr3 116350967 . G A 0 PASS DP=43;GPV=1;SPV=0.00043396;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5 +chr3 117315395 . C T 0 PASS DP=52;GPV=1;SPV=0.14505;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:21,4:10,1 +chr3 117979641 . G A 0 PASS DP=65;GPV=1;SPV=2.2822e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:14,7:6,7 +chr3 118392849 . A T 0 PASS DP=61;GPV=1;SPV=0.008555;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,3:10,3 +chr3 120118602 . TAAAAA T 0 PASS DP=30;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:5,3:6,1 +chr3 123183268 . TTC T 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,1:9,6 +chr3 123694091 . G C 0 PASS DP=50;GPV=1;SPV=0.0029206;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,1:6,4 +chr3 124597073 . A C 0 PASS DP=55;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,3:0,1:1,2 +chr3 125030879 . T C 0 PASS DP=58;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:7,4:9,9 +chr3 125214652 . CA C 0 PASS DP=36;GPV=1;SPV=0.00023483;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:5,9:4,6 +chr3 125712093 . C T 0 PASS DP=69;GPV=1;SPV=0.00094346;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,4:9,4 +chr3 126891525 . C T 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,3:10,6 +chr3 127244996 . CA C 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:7,4:0,2 +chr3 130001138 . C T 0 PASS DP=80;GPV=1;SPV=0.046672;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,3:13,1 +chr3 130639103 . G A 0 PASS DP=65;GPV=1;SPV=4.4247e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:9,10:7,8 +chr3 130986903 . GT G 0 PASS DP=38;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:8,2:7,3 +chr3 131615891 . T A 0 PASS DP=21;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,3:3,2:2,1 +chr3 131631897 . C CTT 0 PASS DP=32;GPV=1;SPV=0.21557;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:10,2:6,1 +chr3 133150342 . G GTTTTT 0 PASS DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,6:4,1 +chr3 133449949 . AAGAGAG A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3 +chr3 134289297 . A ACAAAAAC 0 PASS DP=50;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:5,3:10,5 +chr3 134582164 . A C 0 PASS DP=48;GPV=1;SPV=0.00034194;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8 +chr3 135541930 . GTA G 0 PASS DP=46;GPV=1;SPV=0.018356;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:7,5:6,2 +chr3 138050905 . G A 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2 +chr3 147343399 . CT C 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr3 147860263 . G A 0 PASS DP=62;GPV=1;SPV=4.2249e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,5:7,6 +chr3 148614914 . TGAGA T 0 PASS DP=41;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:6,2:5,2 +chr3 148811068 . A ATCT 0 PASS DP=50;GPV=1;SPV=0.0041352;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,1:12,7 +chr3 148811069 . C T 0 PASS DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,2:14,9 +chr3 150723292 . TTCTTTCTTTTTCTTTCTTTC T 0 PASS DP=38;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:1,3:15,2 +chr3 151174855 . C T 0 PASS DP=58;GPV=1;SPV=0.00016103;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,8:10,8 +chr3 156590063 . T C 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,10:13,3 +chr3 157005999 . AT A 0 PASS DP=57;GPV=1;SPV=0.013286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:13,4:6,3 +chr3 157071796 . A T 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,2:0,0:1,2 +chr3 157304038 . T TATATATATATATATATATATAC 0 PASS DP=42;GPV=1;SPV=0.031941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,2:5,4 +chr3 157674912 . A ATTCTTTCT 0 PASS DP=41;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:1,3:8,5 +chr3 159626255 . G T 0 PASS DP=32;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:2,1:3,1 +chr3 160137036 . A C 0 PASS DP=48;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,4:10,2:5,2 +chr3 167725256 . CAAAAAAGAAAAA C 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1 +chr3 168886414 . TAC T 0 PASS DP=25;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,3:4,2 +chr3 171813199 . T A 0 PASS DP=58;GPV=1;SPV=0.00015824;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:9,5:10,7 +chr3 172712727 . CCTCTCTCT C 0 PASS DP=40;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:5,5:4,1 +chr3 173233574 . T A 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:6,3:3,3 +chr3 174348015 . CAA C 0 PASS DP=35;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1 +chr3 174368155 . TAAA T 0 PASS DP=21;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1 +chr3 174703303 . CT C 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5 +chr3 175016670 . AT A 0 PASS DP=69;GPV=1;SPV=2.5614e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:13,5:7,7 +chr3 175016675 . A T 0 PASS DP=63;GPV=1;SPV=0.0002841;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,5:7,7 +chr3 175232234 . G GAAGAGGAAGAGGAAGAAGAAAGA 0 PASS DP=27;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,3:2,2 +chr3 175384300 . T A 0 PASS DP=67;GPV=1;SPV=7.9253e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,4:8,10 +chr3 177540989 . C T 0 PASS DP=43;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:4,1:14,3 +chr3 177687164 . TTGTGTGTGTGTGTGTGTGTGTG T 0 PASS DP=23;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,3:4,3 +chr3 178283385 . C CA 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr3 180444297 . CT C 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,5:7,5 +chr3 180755577 . C CT 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2 +chr3 180864487 . C CT 0 PASS DP=22;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,5:1,1 +chr3 181447069 . CTT C 0 PASS DP=36;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:4,6:5,2 +chr3 183657107 . C G 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:21,2:9,2 +chr3 183725041 . C CT 0 PASS DP=23;GPV=1;SPV=0.0013736;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,5:0,3:0,2 +chr3 184617395 . GAA G 0 PASS DP=20;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,2:2,3 +chr3 184658008 . C CT 0 PASS DP=30;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,5:3,2 +chr3 186259095 . G A 0 PASS DP=69;GPV=1;SPV=0.015379;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:7,1:10,4 +chr3 187137817 . G C 0 PASS DP=43;GPV=1;SPV=0.00022958;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:5,9:5,6 +chr3 187137821 . CA C 0 PASS DP=43;GPV=1;SPV=0.005394;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:5,8:8,2 +chr3 187303546 . CTTTCTTTCTT C 0 PASS DP=24;GPV=1;SPV=0.019763;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,2:6,2 +chr3 187434294 . C CAT 0 PASS DP=37;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:6,1:8,4 +chr3 187434387 . G A 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,4:11,6 +chr3 187597736 . T C 0 PASS DP=34;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:3,4:4,3 +chr3 191463020 . C CTTTCTTTCTT 0 PASS DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,0:4,2 +chr3 192656320 . CAGAG C 0 PASS DP=53;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:5,2:2,2 +chr3 192788183 . G GT 0 PASS DP=19;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,3:1,2:2,1 +chr3 193264511 . C CT 0 PASS DP=51;GPV=1;SPV=0.0083293;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:10,6:5,5 +chr3 194011714 . CA C 0 PASS DP=31;GPV=1;SPV=0.012914;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:7,6:4,2 +chr3 194866663 . GTATATATATA G 0 PASS DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,4:1,2 +chr3 195728090 . T C 0 PASS DP=119;GPV=1;SPV=0.042229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:25,9:27,7 +chr3 195746888 . G T 0 PASS DP=115;GPV=1;SPV=0.039792;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:24,7:24,3 +chr3 195983454 . A C 0 PASS DP=90;GPV=1;SPV=0.028926;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:6,1:39,5 +chr3 197623223 . C T 0 PASS DP=57;GPV=1;SPV=0.03191;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3 +chr3 197827646 . G A 0 PASS DP=64;GPV=1;SPV=1.711e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,6:9,8 +chr4 16009 . G A 0 PASS DP=70;GPV=1;SPV=0.021504;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:19,4:10,4 +chr4 41218 . T C 0 PASS DP=228;GPV=1;SPV=0.015504;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:43,6:55,7 +chr4 45414 . A C 0 PASS DP=304;GPV=1;SPV=0.028326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:137,21:60,7:77,14 +chr4 49031 . G C 0 PASS DP=194;GPV=1;SPV=0.040434;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:84,13:43,7:41,6 +chr4 49132 . G C 0 PASS DP=182;GPV=1;SPV=0.046495;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:76,12:40,5:36,7 +chr4 59576 . A G 0 PASS DP=266;GPV=1;SPV=0.018653;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:116,18:64,7:52,11 +chr4 62314 . G C 0 PASS DP=250;GPV=1;SPV=0.0081263;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:97,17:40,12:57,5 +chr4 1283150 . C T 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2 +chr4 1296586 . G T 0 PASS DP=41;GPV=1;SPV=0.027154;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,1:9,4 +chr4 1860669 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr4 3580444 . T TCATCCATCCATCCATC 0 PASS DP=34;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:6,2:12,2 +chr4 4010099 . A ATTTTTT 0 PASS DP=40;GPV=1;SPV=0.0032628;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1 +chr4 5441527 . T A 0 PASS DP=51;GPV=1;SPV=0.0079024;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,7:9,7 +chr4 8409607 . T TGC 0 PASS DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,3:8,2 +chr4 8626671 . G GT 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,3:1,1 +chr4 10610050 . T G 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr4 10786561 . G GT 0 PASS DP=25;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr4 11305451 . TAAAA T 0 PASS DP=18;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,3:1,3 +chr4 14012406 . C T 0 PASS DP=29;GPV=1;SPV=0.08867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr4 14471731 . T C 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,3:12,1 +chr4 14548401 . C T 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,8:6,3 +chr4 15722592 . A AT 0 PASS DP=37;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:10,7:2,3 +chr4 17404560 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,3:1,1 +chr4 17448183 . CT C 0 PASS DP=22;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:2,5:1,2 +chr4 17925890 . A C 0 PASS DP=37;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,3:0,1:2,2 +chr4 18948670 . G A 0 PASS DP=57;GPV=1;SPV=0.0015903;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,5:9,4 +chr4 19324347 . AT A 0 PASS DP=65;GPV=1;SPV=0.00012761;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7 +chr4 20211809 . A T 0 PASS DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1 +chr4 22181677 . CATAG C 0 PASS DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,4:5,3 +chr4 22872559 . CA C 0 PASS DP=26;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:6,4:0,1 +chr4 24122385 . A ATG 0 PASS DP=35;GPV=1;SPV=0.0046348;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2 +chr4 25046334 . TACACACAC T 0 PASS DP=35;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:4,1:0,6 +chr4 25453947 . A T 0 PASS DP=31;GPV=1;SPV=0.014049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,1:5,4 +chr4 25679119 . C T 0 PASS DP=54;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:15,3:6,3 +chr4 25808836 . G A 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1 +chr4 26244317 . A G 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2 +chr4 26590809 . T G 0 PASS DP=28;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr4 27108120 . A G 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,7:5,3 +chr4 27792425 . C CAA 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr4 27799164 . A C 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,7:12,2 +chr4 29733016 . GTT G 0 PASS DP=76;GPV=1;SPV=0.040563;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:22,2:14,3 +chr4 29965622 . A AT 0 PASS DP=45;GPV=1;SPV=0.00061478;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3 +chr4 32641732 . G A 0 PASS DP=37;GPV=1;SPV=1.8212e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:1,10:6,5 +chr4 32671096 . AC A 0 PASS DP=40;GPV=1;SPV=0.0028593;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,4:3,5 +chr4 32717008 . C CT 0 PASS DP=33;GPV=1;SPV=0.0029614;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,6:6,3 +chr4 35152970 . AT A 0 PASS DP=30;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:3,1:1,5 +chr4 35233969 . G GTA 0 PASS DP=44;GPV=1;SPV=0.0010229;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:8,4:6,6 +chr4 35312910 . G A 0 PASS DP=73;GPV=1;SPV=8.0398e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6 +chr4 35468056 . G T 0 PASS DP=49;GPV=1;SPV=0.022198;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,3:10,6 +chr4 38087862 . AG A 0 PASS DP=26;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:0,4:5,2 +chr4 38438950 . G GA 0 PASS DP=43;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,6:9,7 +chr4 38718049 . C T 0 PASS DP=68;GPV=1;SPV=1.974e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:11,10:12,7 +chr4 39179952 . C G 0 PASS DP=63;GPV=1;SPV=3.8896e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:7,4:9,10 +chr4 39789185 . G GA 0 PASS DP=47;GPV=1;SPV=0.0070165;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,7:5,1 +chr4 40481486 . A T 0 PASS DP=21;GPV=1;SPV=0.0067079;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:0,3:3,4 +chr4 41343610 . G T 0 PASS DP=49;GPV=1;SPV=0.00014652;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,7:3,8 +chr4 42555146 . C CT 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr4 43503790 . T A 0 PASS DP=49;GPV=1;SPV=5.6363e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,6:9,6 +chr4 43758095 . T C 0 PASS DP=36;GPV=1;SPV=0.0021846;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,10:3,5:5,5 +chr4 43846701 . T C 0 PASS DP=27;GPV=1;SPV=0.00057502;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:3,15:3,7:0,8 +chr4 44121593 . G C 0 PASS DP=58;GPV=1;SPV=5.8313e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,5:6,7 +chr4 44349071 . G GCCA 0 PASS DP=43;GPV=1;SPV=0.00025277;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,3:4,7 +chr4 44987638 . C T 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,2:7,4 +chr4 46100707 . G GA 0 PASS DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,7:1,6:0,1 +chr4 48393386 . T TTGTGTG 0 PASS DP=34;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,7:3,4:3,3 +chr4 48823432 . A T 0 PASS DP=51;GPV=1;SPV=0.001147;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,5:12,6 +chr4 48943952 . TAA T 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3 +chr4 49150033 . G C 0 PASS DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3 +chr4 49158494 . C T 0 PASS DP=163;GPV=1;SPV=0.038593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:40,7:37,7 +chr4 49159235 . G A 0 PASS DP=187;GPV=1;SPV=0.024688;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:78,10:24,1:54,9 +chr4 49184579 . A C 0 PASS DP=116;GPV=1;SPV=0.029498;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:24,6:20,7 +chr4 49195425 . C T 0 PASS DP=112;GPV=1;SPV=0.013575;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:34,4:21,3 +chr4 49226686 . C T 0 PASS DP=224;GPV=1;SPV=0.017843;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:82,17:46,14:36,3 +chr4 49241359 . G A 0 PASS DP=150;GPV=1;SPV=0.013299;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:35,6:28,6 +chr4 49241573 . G C 0 PASS DP=142;GPV=1;SPV=0.045618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:21,9:30,4 +chr4 49246982 . C T 0 PASS DP=143;GPV=1;SPV=0.0048956;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:60,12:25,10:35,2 +chr4 49252716 . T A 0 PASS DP=206;GPV=1;SPV=0.011007;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:36,8:39,9 +chr4 49261767 . T A 0 PASS DP=323;GPV=1;SPV=0.028096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:139,19:66,6:73,13 +chr4 49263781 . A C 0 PASS DP=236;GPV=1;SPV=0.0034993;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:107,13:59,6:48,7 +chr4 49273073 . A C 0 PASS DP=640;GPV=1;SPV=0.018305;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:295:254,41:130,20:124,21 +chr4 49490706 . G A 0 PASS DP=483;GPV=1;SPV=0.022536;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:211,33:118,15:93,18 +chr4 49497096 . G GAT 0 PASS DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,4:22,1 +chr4 49520640 . TAGGGTTGGATTAGTGTGAGGGTG T 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:21,4:1,0 +chr4 49543512 . C T 0 PASS DP=353;GPV=1;SPV=0.0083518;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:152,17:34,6:118,11 +chr4 49585249 . G C 0 PASS DP=56;GPV=1;SPV=0.0048935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:11,8:8,7 +chr4 49612408 . G T 0 PASS DP=86;GPV=1;SPV=0.031714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,10:18,2 +chr4 49714997 . C T 0 PASS DP=118;GPV=1;SPV=0.0051851;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:33,1:14,8 +chr4 50007021 . G A 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0 +chr4 50273970 . G A 0 PASS DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,2:20,3 +chr4 50413448 . G T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr4 50463635 . G A 0 PASS DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:4,3:15,1 +chr4 50481840 . T C 0 PASS DP=61;GPV=1;SPV=0.030747;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:2,1:17,4 +chr4 50723811 . C T 0 PASS DP=153;GPV=1;SPV=0.031484;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:52,14:23,10:29,4 +chr4 51016099 . C A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr4 51292859 . A T 0 PASS DP=141;GPV=1;SPV=0.0074367;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:26,6:24,10 +chr4 52528380 . A G 0 PASS DP=35;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,3:2,1:2,2 +chr4 52835837 . TA T 0 PASS DP=40;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:2,6:1,4:1,2 +chr4 54654426 . G A 0 PASS DP=67;GPV=1;SPV=0.068312;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2 +chr4 55170346 . TG T 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,3:11,2 +chr4 55375916 . T G 0 PASS DP=59;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,3:5,3:0,0 +chr4 55604679 . A ATTTT 0 PASS DP=20;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:2,3:2,3 +chr4 55761557 . T TATATATATACAC 0 PASS DP=43;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:9,4:6,3 +chr4 56609050 . CT C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,4:6,5 +chr4 56721176 . A T 0 PASS DP=36;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:6,2:1,2 +chr4 56750279 . G A 0 PASS DP=37;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,5:2,3:6,2 +chr4 56898314 . A C 0 PASS DP=32;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:4,1:2,1 +chr4 57672617 . T A 0 PASS DP=51;GPV=1;SPV=0.0034711;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,7:11,3 +chr4 59362900 . G A 0 PASS DP=59;GPV=1;SPV=2.7606e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:10,4:5,7 +chr4 59604543 . CCTCTCT C 0 PASS DP=30;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:2,5:5,3 +chr4 61596005 . T C 0 PASS DP=64;GPV=1;SPV=4.8434e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:7,9:4,6 +chr4 63262848 . A C 0 PASS DP=52;GPV=1;SPV=0.002076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,4:5,4 +chr4 63539399 . A T 0 PASS DP=52;GPV=1;SPV=0.0027222;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,7:9,2 +chr4 64460069 . A G 0 PASS DP=61;GPV=1;SPV=0.00012961;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,8:10,4 +chr4 64669447 . G A 0 PASS DP=34;GPV=1;SPV=0.014275;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,5:4,3 +chr4 65229314 . G GA 0 PASS DP=61;GPV=1;SPV=0.0054264;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,4:9,4 +chr4 66352614 . C T 0 PASS DP=58;GPV=1;SPV=9.6988e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,6:8,6 +chr4 66786246 . A G 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,2:0,0 +chr4 68764743 . A T 0 PASS DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,5:12,8 +chr4 68870508 . A G 0 PASS DP=21;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2 +chr4 70100946 . G GA 0 PASS DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:7,5:4,3 +chr4 71577684 . CA C 0 PASS DP=44;GPV=1;SPV=0.007849;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,5:4,5 +chr4 72532492 . C T 0 PASS DP=64;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,4:7,3:16,1 +chr4 73318657 . C CTCTT 0 PASS DP=38;GPV=1;SPV=0.043422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:1,2:16,4 +chr4 73785611 . C CA 0 PASS DP=38;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:2,7:4,2 +chr4 73861691 . A C 0 PASS DP=39;GPV=1;SPV=0.0041113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:8,3:2,3 +chr4 76316900 . C CA 0 PASS DP=23;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:3,5:1,1 +chr4 76424292 . T TA 0 PASS DP=31;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,6:4,1 +chr4 77103258 . CATATAT C 0 PASS DP=30;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:3,7:1,2 +chr4 77753902 . A T 0 PASS DP=46;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:5,3:4,1:1,2 +chr4 78040335 . T C 0 PASS DP=57;GPV=1;SPV=0.00079368;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:12,7:11,7 +chr4 78081067 . C T 0 PASS DP=63;GPV=1;SPV=3.5057e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:4,9:14,9 +chr4 78968710 . CTTTT C 0 PASS DP=26;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:3,2:0,0 +chr4 81307689 . C CA 0 PASS DP=33;GPV=1;SPV=0.0024472;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:7,6:1,1 +chr4 81533599 . ATTTTT A 0 PASS DP=26;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,4:3,1 +chr4 82702130 . CTTT C 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2 +chr4 82809422 . T A 0 PASS DP=24;GPV=1;SPV=0.0060573;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:0,4:4,3 +chr4 82947233 . A T 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,4:1,3 +chr4 83182848 . A G 0 PASS DP=37;GPV=1;SPV=0.016795;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,1:5,6 +chr4 83634132 . CA C 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1 +chr4 83893982 . CT C 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,1:6,4 +chr4 84078144 . T C 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,4:12,1 +chr4 87542730 . TCTTTCTTTCTTTC T 0 PASS DP=40;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:4,1:10,6 +chr4 87616352 . CAGCAATGAA C 0 PASS DP=35;GPV=1;SPV=0.1039;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:11,2:3,1 +chr4 87774476 . T C 0 PASS DP=72;GPV=1;SPV=0.012656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:19,4:14,3 +chr4 90083296 . C CA 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:6,7:5,2 +chr4 90854409 . G T 0 PASS DP=61;GPV=1;SPV=0.001818;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4 +chr4 90942828 . G C 0 PASS DP=55;GPV=1;SPV=0.00011829;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:7,4:10,8 +chr4 91041659 . A G 0 PASS DP=59;GPV=1;SPV=0.00013428;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,3:10,7 +chr4 92336954 . G GTT 0 PASS DP=27;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:4,3:3,1 +chr4 92588678 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr4 92911766 . C T 0 PASS DP=42;GPV=1;SPV=0.00012227;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,6:4,6 +chr4 95047250 . C A 0 PASS DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,3:12,6 +chr4 96629329 . T TATTA 0 PASS DP=53;GPV=1;SPV=3.2748e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,4:9,7 +chr4 97072239 . TAA T 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2 +chr4 97589537 . T A 0 PASS DP=53;GPV=1;SPV=1.2409e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:11,7:3,8 +chr4 97793370 . T TAC 0 PASS DP=38;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3 +chr4 98437791 . C CA 0 PASS DP=49;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:10,7:10,2 +chr4 99879799 . C CCTA 0 PASS DP=51;GPV=1;SPV=0.025971;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4 +chr4 99879808 . C T 0 PASS DP=44;GPV=1;SPV=0.014276;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,1:7,4 +chr4 100378940 . TTTTCC T 0 PASS DP=34;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:0,6:3,1 +chr4 100749881 . T A 0 PASS DP=57;GPV=1;SPV=2.4158e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:11,6:3,5 +chr4 100794963 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.043956;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,9:0,4:3,5 +chr4 101582055 . G GAT 0 PASS DP=38;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,5:7,2 +chr4 101748749 . A ATG 0 PASS DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,4:12,6 +chr4 101748762 . C G 0 PASS DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,2:11,4 +chr4 104853700 . G A 0 PASS DP=83;GPV=1;SPV=2.3091e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,10:10,4 +chr4 105406114 . C CAAAA 0 PASS DP=27;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2 +chr4 108247355 . CATATATATATATATATAT C 0 PASS DP=33;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:6,2:1,2 +chr4 111402103 . TA T 0 PASS DP=63;GPV=1;SPV=0.0021401;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,5:14,2 +chr4 112204072 . C CT 0 PASS DP=34;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2 +chr4 114791514 . C CA 0 PASS DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,3:11,3 +chr4 115463073 . A G 0 PASS DP=56;GPV=1;SPV=1.7718e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,20:9,13:5,7 +chr4 116204797 . G T 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4 +chr4 118563314 . G GT 0 PASS DP=39;GPV=1;SPV=0.023838;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr4 119769356 . G A 0 PASS DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,5:11,6 +chr4 120224633 . A C 0 PASS DP=32;GPV=1;SPV=0.00058257;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,12:3,7:4,5 +chr4 120489546 . G A 0 PASS DP=53;GPV=1;SPV=0.0048426;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,3:7,5 +chr4 120644181 . G C 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,3:15,1 +chr4 123373069 . T TAAAGAAAG 0 PASS DP=41;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,4:6,2 +chr4 125249246 . C T 0 PASS DP=64;GPV=1;SPV=2.8879e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,4:12,7 +chr4 128563468 . GTT G 0 PASS DP=40;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2 +chr4 128731300 . G A 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr4 130360918 . G A 0 PASS DP=64;GPV=1;SPV=7.3464e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:5,4:14,7 +chr4 130720455 . G A 0 PASS DP=61;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,7:7,4:4,3 +chr4 131674287 . G A 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:15,2:9,5 +chr4 131745978 . C T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr4 132042003 . G A 0 PASS DP=51;GPV=1;SPV=2.4323e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:5,10:9,5 +chr4 132205992 . A T 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:15,6:9,7 +chr4 132438919 . A G 0 PASS DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2 +chr4 133731278 . CAA C 0 PASS DP=39;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:7,4:4,1 +chr4 134669019 . C G 0 PASS DP=28;GPV=1;SPV=0.016117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1 +chr4 134774594 . T A 0 PASS DP=70;GPV=1;SPV=2.9466e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:11,9:9,7 +chr4 135597776 . C A 0 PASS DP=69;GPV=1;SPV=0.0014466;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2 +chr4 136057133 . C CGT 0 PASS DP=47;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:10,3:4,6 +chr4 139572216 . CTTTTTTTT C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2 +chr4 140901671 . A G 0 PASS DP=61;GPV=1;SPV=0.0016174;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,4:13,5 +chr4 141101739 . C T 0 PASS DP=63;GPV=1;SPV=3.2414e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,5:5,7 +chr4 141956697 . A G 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,4:15,1 +chr4 142579879 . G GTAGGTAGATAGA 0 PASS DP=46;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:9,3:7,2 +chr4 143880094 . T G 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,1:15,4 +chr4 144158703 . A ATTTTTT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3 +chr4 144473366 . C CA 0 PASS DP=41;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:9,4:3,4 +chr4 145706808 . A AT 0 PASS DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,6:7,2 +chr4 145864420 . C CA 0 PASS DP=32;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:8,8:2,2 +chr4 149102144 . CTT C 0 PASS DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:11,4:2,1 +chr4 150148381 . CT C 0 PASS DP=32;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:4,8:7,2 +chr4 150228159 . C T 0 PASS DP=58;GPV=1;SPV=0.00038673;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:2,3:12,4 +chr4 150818532 . C CTG 0 PASS DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,6:10,5 +chr4 151074116 . G A 0 PASS DP=55;GPV=1;SPV=0.00012852;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,4:7,5 +chr4 151328963 . CAA C 0 PASS DP=25;GPV=1;SPV=0.0037445;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr4 151697953 . GTATATATA G 0 PASS DP=35;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:0,1:3,1 +chr4 151811965 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,2:3,4 +chr4 155015980 . T C 0 PASS DP=44;GPV=1;SPV=0.019656;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:8,4:5,1 +chr4 156851930 . CAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.0055469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,7:5,1 +chr4 157277890 . GTA G 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,1:12,3 +chr4 160193329 . C T 0 PASS DP=42;GPV=1;SPV=0.0012507;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:3,5:6,7 +chr4 163883259 . G A 0 PASS DP=47;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,2:0,0:0,2 +chr4 163883260 . A T 0 PASS DP=45;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,2:0,0:0,2 +chr4 164754450 . ACT A 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2 +chr4 164854493 . AT A 0 PASS DP=39;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,3:11,2 +chr4 165254553 . C G 0 PASS DP=65;GPV=1;SPV=0.036638;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,2:14,5 +chr4 165289509 . G GT 0 PASS DP=31;GPV=1;SPV=0.0016314;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3 +chr4 166666435 . T C 0 PASS DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2 +chr4 167111783 . G C 0 PASS DP=53;GPV=1;SPV=3.2263e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:8,5:7,9 +chr4 168386575 . G GAA 0 PASS DP=43;GPV=1;SPV=0.0060713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:10,11:4,2 +chr4 169787292 . A T 0 PASS DP=68;GPV=1;SPV=0.040231;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,4:13,3 +chr4 169985113 . TATCTATCAATC T 0 PASS DP=43;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,4:9,5 +chr4 175484848 . A C 0 PASS DP=38;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1 +chr4 175706655 . G A 0 PASS DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,8:8,7 +chr4 176056801 . C CAATA 0 PASS DP=54;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:5,2:13,6 +chr4 176204540 . CT C 0 PASS DP=39;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:6,4:7,1 +chr4 176500213 . T TCACACA 0 PASS DP=39;GPV=1;SPV=0.024154;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,2:3,3 +chr4 176570483 . C CTCTT 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1 +chr4 176617441 . T TATTCCCATTTTAC 0 PASS DP=38;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:4,3:8,3 +chr4 176617455 . C CT 0 PASS DP=37;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:4,2:6,3 +chr4 177002018 . CTGTG C 0 PASS DP=45;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,4:0,2:1,2 +chr4 177410391 . AT A 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:14,4:3,3 +chr4 178835888 . AT A 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,4:6,3 +chr4 179560034 . T TAAAAAA 0 PASS DP=38;GPV=1;SPV=0.00053043;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:5,9:3,5 +chr4 179974374 . CT C 0 PASS DP=27;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1 +chr4 180011122 . G A 0 PASS DP=57;GPV=1;SPV=4.702e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,8:6,7 +chr4 181253700 . A G 0 PASS DP=49;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,3:7,1 +chr4 181789218 . A ATTTATTTTAT 0 PASS DP=72;GPV=1;SPV=0.044727;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:11,4:15,5 +chr4 182125139 . T C 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3 +chr4 182223783 . C CAAA 0 PASS DP=29;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,3:4,2 +chr4 183374863 . AAT A 0 PASS DP=45;GPV=1;SPV=0.05832;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,3:9,3 +chr4 184005474 . A AAAAAAC 0 PASS DP=53;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,4:9,6 +chr4 184814290 . C CA 0 PASS DP=39;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:6,6:3,1 +chr4 185453543 . CT C 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr4 186476636 . C G 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,3:14,1 +chr4 187427448 . G T 0 PASS DP=58;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,2:1,1:3,1 +chr4 187939899 . A T 0 PASS DP=46;GPV=1;SPV=0.00057914;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,7:9,4 +chr4 187991036 . T TAAAC 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,3:4,5 +chr4 187996987 . GGGAGCATGGAGCATGGAGCGTGGAGCGT G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3 +chr4 188270847 . G C 0 PASS DP=71;GPV=1;SPV=0.0015991;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,10:10,9:12,1 +chr4 188797423 . G A 0 PASS DP=76;GPV=1;SPV=1.513e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,9:14,4 +chr4 188801720 . T TTTTATTTATTTA 0 PASS DP=48;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,9:7,7:7,2 +chr4 189686678 . A T 0 PASS DP=43;GPV=1;SPV=0.042825;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1 +chr4 189691776 . G A 0 PASS DP=75;GPV=1;SPV=0.042478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,1:16,5 +chr4 189787161 . A C 0 PASS DP=59;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,5:4,4:7,1 +chr4 189808046 . CACACACACACACACACATACAT C 0 PASS DP=39;GPV=1;SPV=0.13236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:15,3:8,4 +chr4 190053653 . T A 0 PASS DP=198;GPV=1;SPV=0.0093712;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:83,14:32,5:51,9 +chr5 710573 . C CTG 0 PASS DP=63;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,3:17,2 +chr5 1076411 . C CATCCTGTGACCA 0 PASS DP=52;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,9:6,3:7,6 +chr5 2580934 . T C 0 PASS DP=28;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:0,0:7,4 +chr5 2907358 . A C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2 +chr5 4107442 . G GA 0 PASS DP=53;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:18,5:7,1 +chr5 4258666 . C CT 0 PASS DP=25;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:5,2:0,0 +chr5 4326862 . C CCT 0 PASS DP=37;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:5,1:8,3 +chr5 4479231 . G A 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,6:10,7 +chr5 4825300 . T A 0 PASS DP=48;GPV=1;SPV=5.9839e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:7,4:5,7 +chr5 4912782 . G A 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,3:1,1 +chr5 5908876 . CTATTTTATTTTATTTTATTT C 0 PASS DP=39;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,4:8,2 +chr5 5925042 . A G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1 +chr5 6751444 . G GCTTTTCAC 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4 +chr5 7207044 . T TTCC 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,3:7,2 +chr5 11081086 . A ACACACACACACACACACACT 0 PASS DP=43;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:14,1:6,3 +chr5 11441368 . ATTT A 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr5 12166540 . A AAAAG 0 PASS DP=27;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,3:3,2 +chr5 12348504 . GT G 0 PASS DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr5 13921475 . TCA T 0 PASS DP=40;GPV=1;SPV=0.027424;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:5,1:12,6 +chr5 13921481 . A T 0 PASS DP=30;GPV=1;SPV=0.0026248;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:1,2:4,6 +chr5 15255713 . G GA 0 PASS DP=54;GPV=1;SPV=0.0013843;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:14,4:2,3 +chr5 15993627 . C T 0 PASS DP=84;GPV=1;SPV=1.6656e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:19,6:9,8 +chr5 16905836 . C CA 0 PASS DP=66;GPV=1;SPV=4.15e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,5:6,6 +chr5 16912802 . G GCA 0 PASS DP=37;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:7,5:2,1 +chr5 16948192 . A ATT 0 PASS DP=42;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,10:2,3:2,7 +chr5 17048058 . A T 0 PASS DP=56;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:0,4:0,2:0,2 +chr5 17517981 . A G 0 PASS DP=165;GPV=1;SPV=0.0039287;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:65,20:25,10:40,10 +chr5 17520616 . G C 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:3,0:32,4 +chr5 17520622 . C G 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:3,0:32,4 +chr5 18898273 . A T 0 PASS DP=62;GPV=1;SPV=2.4825e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7 +chr5 19142888 . C T 0 PASS DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:15,8:15,6 +chr5 21880592 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4 +chr5 22696370 . C CA 0 PASS DP=43;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,9:9,8:6,1 +chr5 22885764 . G A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2 +chr5 23093753 . T C 0 PASS DP=55;GPV=1;SPV=2.5256e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,11:6,4 +chr5 23715625 . ATATAATATATATATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:6,1:0,3 +chr5 23818651 . C A 0 PASS DP=78;GPV=1;SPV=5.7558e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:11,9:13,6 +chr5 24362633 . G T 0 PASS DP=23;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:3,1:2,1 +chr5 24449752 . GTATATATATATATATATATATATATA G 0 PASS DP=23;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,3:2,3 +chr5 25931554 . A T 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3 +chr5 26298904 . A C 0 PASS DP=35;GPV=1;SPV=0.36264;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,4:3,1:5,3 +chr5 26933496 . G A 0 PASS DP=70;GPV=1;SPV=1.9242e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:14,12:10,5 +chr5 27327781 . G T 0 PASS DP=43;GPV=1;SPV=0.023799;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:5,4:4,3 +chr5 27560009 . C CT 0 PASS DP=31;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,5:0,1 +chr5 27656828 . C A 0 PASS DP=68;GPV=1;SPV=7.5302e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:17,6:5,6 +chr5 28127451 . AG A 0 PASS DP=65;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,7:6,5 +chr5 28138339 . A G 0 PASS DP=68;GPV=1;SPV=0.0016259;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:18,4:10,6 +chr5 28440136 . G T 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:5,7:14,6 +chr5 29223416 . C T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:15,4:4,4 +chr5 30155111 . G A 0 PASS DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,5:7,5 +chr5 30655965 . A G 0 PASS DP=67;GPV=1;SPV=8.6537e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,5:5,7 +chr5 31199444 . A G 0 PASS DP=45;GPV=1;SPV=0.03185;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:2,3:10,2 +chr5 33073496 . GTTTTTTTTTT G 0 PASS DP=36;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:2,4:7,2 +chr5 34401085 . C T 0 PASS DP=28;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,1:6,6 +chr5 34530037 . C A 0 PASS DP=49;GPV=1;SPV=0.0015209;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,6:10,3 +chr5 35294767 . CA C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:1,5:8,5 +chr5 37105334 . A C 0 PASS DP=47;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,5:6,4:7,1 +chr5 38134496 . AGAG A 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr5 38272776 . GTC G 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:16,3:17,2 +chr5 39053890 . C CA 0 PASS DP=43;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:6,6:4,1 +chr5 39333595 . C CCCTTTCCATG 0 PASS DP=36;GPV=1;SPV=0.025519;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2 +chr5 39478507 . A C 0 PASS DP=42;GPV=1;SPV=0.20035;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:12,1:10,2 +chr5 42448845 . T C 0 PASS DP=46;GPV=1;SPV=0.0021725;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4 +chr5 43088211 . A G 0 PASS DP=46;GPV=1;SPV=0.036676;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,2:4,2 +chr5 43681259 . CA C 0 PASS DP=31;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,7:3,2 +chr5 44209224 . CT C 0 PASS DP=27;GPV=1;SPV=0.0024409;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:6,8:1,1 +chr5 44868214 . AT A 0 PASS DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,1:16,4 +chr5 46627803 . T A 0 PASS DP=44;GPV=1;SPV=0.007849;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4 +chr5 46693227 . C T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,1:9,3 +chr5 46772267 . T C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,2:3,2 +chr5 47048025 . C T 0 PASS DP=23;GPV=1;SPV=0.093168;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:6,1:2,2 +chr5 47183378 . C T 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1 +chr5 50134813 . T A 0 PASS DP=51;GPV=1;SPV=0.022618;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,2:15,3 +chr5 50140509 . C T 0 PASS DP=106;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:51,9:8,3:43,6 +chr5 50142018 . T A 0 PASS DP=79;GPV=1;SPV=0.0083637;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,2:23,4 +chr5 50353017 . A AGTGTGTGTGTGTGTGTGT 0 PASS DP=33;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:9,5:6,1 +chr5 51703098 . C T 0 PASS DP=42;GPV=1;SPV=1.3217e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,4:2,6 +chr5 54275851 . A AT 0 PASS DP=46;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:6,3:9,6 +chr5 54749468 . C CA 0 PASS DP=33;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:5,6:2,2 +chr5 55249182 . C CT 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1 +chr5 61756494 . G GGTGTGTGTGT 0 PASS DP=49;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:12,4:8,4 +chr5 64208956 . T C 0 PASS DP=64;GPV=1;SPV=7.064e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,5:11,8 +chr5 65559630 . G A 0 PASS DP=40;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,4:8,1:3,3 +chr5 66113763 . CA C 0 PASS DP=35;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,3:1,1 +chr5 67280831 . CA C 0 PASS DP=40;GPV=1;SPV=0.00024201;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:9,7:2,5 +chr5 67984149 . T TAA 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,7:1,1 +chr5 68648681 . A ACATGGGTATTTTCGCAGCTTCC 0 PASS DP=56;GPV=1;SPV=0.0081402;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:9,5:8,5 +chr5 69092095 . T A 0 PASS DP=68;GPV=1;SPV=0.042367;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,8:16,5:13,3 +chr5 71442703 . G C 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1 +chr5 72008798 . GA G 0 PASS DP=51;GPV=1;SPV=0.0018707;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,7:7,2 +chr5 73449741 . C CA 0 PASS DP=25;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr5 76182959 . CAGAG C 0 PASS DP=32;GPV=1;SPV=0.10714;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,2:0,1:1,1 +chr5 77335532 . G GGTGTGT 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,2:3,6 +chr5 77466806 . A ATT 0 PASS DP=45;GPV=1;SPV=0.01322;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2 +chr5 77694855 . G A 0 PASS DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:11,4:7,9 +chr5 78904685 . CTT C 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2 +chr5 79137077 . T TGAATATA 0 PASS DP=39;GPV=1;SPV=0.028936;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr5 79566669 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,2:7,2 +chr5 80224133 . C CAA 0 PASS DP=40;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:4,7:3,2 +chr5 80275747 . G A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr5 81296613 . C CTT 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1 +chr5 82534451 . GT G 0 PASS DP=51;GPV=1;SPV=0.00019163;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,10:5,2 +chr5 82661949 . AAGAG A 0 PASS DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,7:3,3 +chr5 84374197 . A G 0 PASS DP=35;GPV=1;SPV=1.6358e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,7:0,3 +chr5 84934274 . C CA 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,7:5,2 +chr5 85443188 . C G 0 PASS DP=54;GPV=1;SPV=4.3264e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,8:7,7 +chr5 85994895 . AT A 0 PASS DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3 +chr5 88132228 . A ATAAACTAATTATACAATTAGTTTAT 0 PASS DP=42;GPV=1;SPV=0.024679;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1 +chr5 88464585 . GA G 0 PASS DP=47;GPV=1;SPV=1.784e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4 +chr5 88904619 . G C 0 PASS DP=53;GPV=1;SPV=0.018514;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,1:5,4 +chr5 92309593 . T A 0 PASS DP=76;GPV=1;SPV=2.0254e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:13,10:7,4 +chr5 94954147 . C CAA 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,1:1,3 +chr5 95009056 . AAGAGAG A 0 PASS DP=26;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:5,4:0,1 +chr5 95263507 . C T 0 PASS DP=53;GPV=1;SPV=0.015665;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,2:11,6 +chr5 98901749 . T TA 0 PASS DP=46;GPV=1;SPV=0.0050264;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,9:8,3 +chr5 99027283 . A G 0 PASS DP=37;GPV=1;SPV=0.0002652;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:8,6:1,4 +chr5 99523029 . G A 0 PASS DP=101;GPV=1;SPV=0.025471;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:22,3:22,10 +chr5 101502647 . A C 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,2:0,0 +chr5 105295049 . TA T 0 PASS DP=43;GPV=1;SPV=0.0027511;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,12:12,9:4,3 +chr5 105678880 . AT A 0 PASS DP=42;GPV=1;SPV=0.00023971;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,3:6,7 +chr5 107194847 . CTTTTT C 0 PASS DP=32;GPV=1;SPV=0.0019836;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:8,8:1,3 +chr5 107649910 . G C 0 PASS DP=56;GPV=1;SPV=0.00090534;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,8:6,4 +chr5 109353445 . T C 0 PASS DP=35;GPV=1;SPV=0.1039;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:7,1:7,2 +chr5 110128036 . C A 0 PASS DP=64;GPV=1;SPV=0.00010989;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:14,10:10,7 +chr5 110620577 . ATCTCTCTCTCTCTCTCTCTC A 0 PASS DP=29;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:4,1:10,3 +chr5 117203277 . C T 0 PASS DP=72;GPV=1;SPV=0.057257;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr5 117366735 . TTATATA T 0 PASS DP=23;GPV=1;SPV=0.26374;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,3:4,2:3,1 +chr5 118438718 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr5 118543049 . GTGTATATGTATTAC G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,2:8,2 +chr5 118543768 . C G 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,6:2,4 +chr5 118577937 . CT C 0 PASS DP=30;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,4:3,4 +chr5 120048898 . ATCCTATG A 0 PASS DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr5 120048914 . CTA C 0 PASS DP=44;GPV=1;SPV=0.018737;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr5 120048956 . T C 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr5 120195278 . G A 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,2:3,7 +chr5 121343977 . G A 0 PASS DP=37;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,5:7,2:3,3 +chr5 121493096 . A T 0 PASS DP=74;GPV=1;SPV=0.0092138;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,7:8,1:6,6 +chr5 122128378 . T A 0 PASS DP=33;GPV=1;SPV=0.022595;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2 +chr5 124521954 . A AC 0 PASS DP=38;GPV=1;SPV=0.0067861;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,2:10,7 +chr5 125216989 . A T 0 PASS DP=64;GPV=1;SPV=0.014912;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,5:7,3:3,2 +chr5 126721755 . C A 0 PASS DP=37;GPV=1;SPV=0.1839;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,5:5,2:7,3 +chr5 127930227 . C G 0 PASS DP=60;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,4:10,2:10,2 +chr5 128915495 . G T 0 PASS DP=58;GPV=1;SPV=0.00022655;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,13:3,7:3,6 +chr5 129436180 . C CT 0 PASS DP=64;GPV=1;SPV=0.00051949;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:9,2:12,7 +chr5 129816655 . A G 0 PASS DP=60;GPV=1;SPV=0.029646;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3 +chr5 130538347 . G GA 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1 +chr5 130540752 . TACACAC T 0 PASS DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:3,2:1,6 +chr5 130765983 . G A 0 PASS DP=69;GPV=1;SPV=1.152e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,6:7,10 +chr5 132328823 . TTATATA T 0 PASS DP=36;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,2:4,3 +chr5 136513473 . GAA G 0 PASS DP=30;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr5 137518612 . AAAGAAAG A 0 PASS DP=30;GPV=1;SPV=0.00035367;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,4:0,2 +chr5 138267188 . CT C 0 PASS DP=31;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:6,6:5,1 +chr5 138433114 . C CT 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,4:3,2 +chr5 138772864 . A G 0 PASS DP=30;GPV=1;SPV=0.009553;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,2:4,5 +chr5 139717201 . G T 0 PASS DP=53;GPV=1;SPV=0.0016927;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,6:9,5 +chr5 139826200 . G T 0 PASS DP=55;GPV=1;SPV=0.0031706;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,4:11,5 +chr5 140707351 . C G 0 PASS DP=47;GPV=1;SPV=0.00059971;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,5:9,4 +chr5 141395556 . G T 0 PASS DP=46;GPV=1;SPV=0.049216;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3 +chr5 141989692 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.10526;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,9:3,1 +chr5 142306913 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.029368;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:9,6:7,1 +chr5 142311564 . TTTGTTGTTGTTGTTG T 0 PASS DP=46;GPV=1;SPV=0.00072806;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,11:3,7:2,4 +chr5 142392104 . T C 0 PASS DP=24;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,3:2,1 +chr5 142498760 . T G 0 PASS DP=48;GPV=1;SPV=0.0017818;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,3:4,6 +chr5 144256615 . TTG T 0 PASS DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4 +chr5 146174144 . TAA T 0 PASS DP=20;GPV=1;SPV=0.0040793;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,6:0,5:0,1 +chr5 146239484 . T C 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,2:5,6 +chr5 148212480 . TTA T 0 PASS DP=32;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,2:6,5 +chr5 148233325 . C T 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,3:11,2 +chr5 148547566 . T TA 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,2:10,2 +chr5 148560205 . TA T 0 PASS DP=37;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:14,3:2,2 +chr5 148945971 . C T 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,6:4,4 +chr5 149598777 . GAT G 0 PASS DP=37;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,2:1,1:1,1 +chr5 151764045 . TATATATA T 0 PASS DP=24;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,4:0,3:1,1 +chr5 151971915 . C A 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,8:8,2 +chr5 153098547 . C T 0 PASS DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,5:10,5 +chr5 154525165 . T A 0 PASS DP=74;GPV=1;SPV=8.2514e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:7,11:11,8 +chr5 154525791 . G A 0 PASS DP=34;GPV=1;SPV=0.00058707;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:0,5:9,6 +chr5 154574640 . C G 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,1:11,5 +chr5 155528491 . G A 0 PASS DP=55;GPV=1;SPV=0.0046429;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4 +chr5 156298576 . C CT 0 PASS DP=20;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1 +chr5 156307555 . G T 0 PASS DP=16;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,2:1,2 +chr5 156981160 . T C 0 PASS DP=45;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,5:5,2:7,3 +chr5 157490891 . C CA 0 PASS DP=35;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:8,7:1,1 +chr5 157607172 . C CAAAAA 0 PASS DP=24;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1 +chr5 158310000 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr5 159241128 . A T 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,2:16,2 +chr5 159579503 . G GTGTATATA 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,6:1,1 +chr5 160009597 . C CATAA 0 PASS DP=49;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,5:7,5 +chr5 162316689 . C G 0 PASS DP=31;GPV=1;SPV=0.041563;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr5 164834924 . T C 0 PASS DP=24;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2 +chr5 165595663 . T G 0 PASS DP=46;GPV=1;SPV=0.0079657;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2 +chr5 166085665 . TAGAAGAATCTAACTAGAG T 0 PASS DP=60;GPV=1;SPV=0.01794;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,3:6,5 +chr5 167101939 . T TA 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1 +chr5 168374065 . G A 0 PASS DP=27;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:3,3:4,1 +chr5 168548035 . T TACACACACACAC 0 PASS DP=37;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2 +chr5 169026345 . A G 0 PASS DP=72;GPV=1;SPV=1.5269e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:13,8:11,8 +chr5 170636716 . C T 0 PASS DP=61;GPV=1;SPV=1.8479e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,4:8,7 +chr5 173289783 . CCCTTCCTTCCTTCCTTCCTTCCTT C 0 PASS DP=23;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,1:7,3 +chr5 174950954 . C CAAAAAAAA 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:10,4:1,0 +chr5 175929273 . A G 0 PASS DP=67;GPV=1;SPV=0.029194;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,7:11,2 +chr5 175955410 . G C 0 PASS DP=110;GPV=1;SPV=0.049555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:28,6:16,7 +chr5 176072362 . G A 0 PASS DP=85;GPV=1;SPV=0.040785;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:12,8:23,3 +chr5 176076559 . A C 0 PASS DP=58;GPV=1;SPV=0.0311;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,1:10,4 +chr5 176089142 . A G 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,1:16,3 +chr5 176104048 . C T 0 PASS DP=71;GPV=1;SPV=0.011566;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:11,2:21,5 +chr5 176231512 . C T 0 PASS DP=45;GPV=1;SPV=0.029148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,1:4,7 +chr5 176873132 . A C 0 PASS DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,3:2,1 +chr5 177838191 . T C 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,1:16,3 +chr5 177890659 . A G 0 PASS DP=52;GPV=1;SPV=0.0026931;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:3,5:11,6 +chr5 178002192 . CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=38;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:1,0:14,4 +chr5 178731336 . AT A 0 PASS DP=48;GPV=1;SPV=0.00044686;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:2,5:8,8 +chr5 178854098 . C CT 0 PASS DP=37;GPV=1;SPV=0.0005304;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,8:8,2 +chr5 179003538 . AT A 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3 +chr5 179077809 . C CT 0 PASS DP=28;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,4:2,3 +chr5 180233038 . A AACACACACACACACACAC 0 PASS DP=29;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:5,3:2,2 +chr5 181169685 . C A 0 PASS DP=74;GPV=1;SPV=0.057399;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,2:13,2 +chr6 325357 . G A 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:2,2:11,3 +chr6 857841 . TCGATCCAC T 0 PASS DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr6 1521364 . T G 0 PASS DP=53;GPV=1;SPV=0.08111;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr6 3298769 . G A 0 PASS DP=65;GPV=1;SPV=1.8219e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:7,12:11,6 +chr6 4756590 . G C 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2 +chr6 5304618 . C T 0 PASS DP=49;GPV=1;SPV=0.00021682;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:9,8:4,8 +chr6 6796626 . ATT A 0 PASS DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,2:3,2 +chr6 6855132 . C CAA 0 PASS DP=49;GPV=1;SPV=0.0041602;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:6,5:4,3 +chr6 7418032 . A G 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,4:10,4 +chr6 8567230 . T C 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr6 9159529 . C T 0 PASS DP=22;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,4:0,1:0,3 +chr6 11259935 . A AACACACACACACACAC 0 PASS DP=43;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,4:6,3 +chr6 11776926 . C A 0 PASS DP=40;GPV=1;SPV=0.0078236;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr6 11931079 . G GGAGA 0 PASS DP=44;GPV=1;SPV=0.047842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,2:9,2 +chr6 12001582 . T C 0 PASS DP=46;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,2:4,1:3,1 +chr6 13799827 . CT C 0 PASS DP=28;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,5:2,1 +chr6 14947393 . C CA 0 PASS DP=36;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:2,4:2,3 +chr6 15404519 . GCACA G 0 PASS DP=31;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,5:3,1 +chr6 16933294 . C A 0 PASS DP=60;GPV=1;SPV=0.00026567;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5 +chr6 17587129 . C T 0 PASS DP=46;GPV=1;SPV=0.017571;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,2:5,7 +chr6 18492372 . AAAC A 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:12,6:4,3 +chr6 19618705 . A G 0 PASS DP=35;GPV=1;SPV=0.00095695;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4 +chr6 20472025 . A AACACACACAC 0 PASS DP=22;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:4,3:2,1 +chr6 20936241 . A AT 0 PASS DP=29;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:7,5:0,1 +chr6 21909773 . G T 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,1:5,4 +chr6 21909776 . G T 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr6 24327451 . A AAGTT 0 PASS DP=54;GPV=1;SPV=0.0017164;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,5:11,6 +chr6 24624012 . G GTTTTC 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr6 24967909 . CTT C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr6 25853406 . GT G 0 PASS DP=26;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:7,4:2,1 +chr6 26913994 . G GAGAT 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,1:11,5 +chr6 27265641 . C CT 0 PASS DP=46;GPV=1;SPV=0.01269;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3 +chr6 27561063 . TC T 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,2:4,5 +chr6 27646781 . AT A 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,1:7,3 +chr6 28063651 . C CA 0 PASS DP=31;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,5:3,4:2,1 +chr6 30382634 . A AAATAATAATAATAATAAT 0 PASS DP=49;GPV=1;SPV=0.073845;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3 +chr6 31168238 . CT C 0 PASS DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,2:5,6 +chr6 31428117 . TATTC T 0 PASS DP=18;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,1:4,1 +chr6 31722845 . C CA 0 PASS DP=34;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:8,7:2,1 +chr6 32044978 . G A 0 PASS DP=87;GPV=1;SPV=0.018384;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,5:15,5 +chr6 36496043 . A AT 0 PASS DP=34;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4 +chr6 36549329 . CTCT C 0 PASS DP=30;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,9:0,2:6,7 +chr6 36777773 . CA C 0 PASS DP=16;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4 +chr6 37464892 . CTGTG C 0 PASS DP=48;GPV=1;SPV=0.0019606;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,7:6,7 +chr6 39281122 . G GTT 0 PASS DP=75;GPV=1;SPV=0.011209;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:23,2:7,7 +chr6 42640399 . T G 0 PASS DP=49;GPV=1;SPV=0.0066302;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:11,7:4,5 +chr6 42974448 . T G 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,5:7,1 +chr6 43294524 . T TCAC 0 PASS DP=40;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,3:9,1 +chr6 43460695 . A ATT 0 PASS DP=57;GPV=1;SPV=0.0012227;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:15,9:8,4 +chr6 45958424 . A T 0 PASS DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,7:1,4:0,3 +chr6 46941470 . G A 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:15,4:5,2 +chr6 49280081 . A G 0 PASS DP=68;GPV=1;SPV=0.00056171;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,6:12,7 +chr6 49297543 . C T 0 PASS DP=56;GPV=1;SPV=0.00036855;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,4:5,6 +chr6 52172643 . AAAGAAAGG A 0 PASS DP=55;GPV=1;SPV=0.0094161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,3:5,4 +chr6 52880731 . G A 0 PASS DP=71;GPV=1;SPV=6.0412e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,6:7,8 +chr6 52945464 . A G 0 PASS DP=58;GPV=1;SPV=0.0073133;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,3:10,3 +chr6 53323576 . C CTT 0 PASS DP=24;GPV=1;SPV=0.012217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:0,5:2,2 +chr6 53821879 . GT G 0 PASS DP=39;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:5,4:2,1 +chr6 54210730 . GA G 0 PASS DP=42;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:6,3:5,2 +chr6 54520748 . A AACAC 0 PASS DP=54;GPV=1;SPV=0.026985;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:11,5:7,4 +chr6 54552173 . A C 0 PASS DP=20;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:4,1:1,1 +chr6 56595997 . ACTTT A 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:9,1:20,3 +chr6 56706326 . G A 0 PASS DP=46;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,4:6,1:8,3 +chr6 57252437 . G GCCT 0 PASS DP=61;GPV=1;SPV=1.0995e-06;SS=2;SSC=59;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,7:6,8 +chr6 58194425 . A T 0 PASS DP=55;GPV=1;SPV=0.00060405;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3 +chr6 58924430 . G T 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,4:1,0 +chr6 60295723 . T C 0 PASS DP=71;GPV=1;SPV=1.5356e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:10,4:10,13 +chr6 60417585 . TAAAA T 0 PASS DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2 +chr6 60944908 . G A 0 PASS DP=73;GPV=1;SPV=4.864e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,10:8,7 +chr6 61210112 . CAAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:3,3:4,3 +chr6 64697953 . C CA 0 PASS DP=59;GPV=1;SPV=0.003938;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:7,2:14,5 +chr6 65293726 . G A 0 PASS DP=67;GPV=1;SPV=2.5502e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,10:8,7 +chr6 66148255 . T C 0 PASS DP=63;GPV=1;SPV=4.6321e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,9:9,6 +chr6 67293929 . A G 0 PASS DP=56;GPV=1;SPV=0.080441;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,5:8,3:15,2 +chr6 67293930 . C T 0 PASS DP=56;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,5:9,3:12,2 +chr6 67293931 . G A 0 PASS DP=53;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,5:9,3:10,2 +chr6 67442154 . C T 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,2:8,7 +chr6 69219487 . A G 0 PASS DP=24;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:1,2:3,2 +chr6 69532257 . CTCTG C 0 PASS DP=37;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3 +chr6 69888777 . CA C 0 PASS DP=41;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:6,4:3,2 +chr6 70271703 . A G 0 PASS DP=66;GPV=1;SPV=7.3475e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,7:12,9 +chr6 70652449 . C CT 0 PASS DP=32;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,8:2,2 +chr6 70873403 . G A 0 PASS DP=75;GPV=1;SPV=0.00013918;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:12,7:16,6 +chr6 71315288 . T TATATATATATATATATCCA 0 PASS DP=31;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,4:3,5 +chr6 72895114 . TA T 0 PASS DP=24;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:3,5:3,2 +chr6 73673929 . C A 0 PASS DP=26;GPV=1;SPV=0.00010562;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,2:1,6 +chr6 74031899 . G A 0 PASS DP=72;GPV=1;SPV=3.2589e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,7:13,6 +chr6 75944917 . T C 0 PASS DP=67;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:0,1:1,1 +chr6 76171460 . T TTTA 0 PASS DP=20;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,2:0,2 +chr6 77706329 . G A 0 PASS DP=52;GPV=1;SPV=0.00012791;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,5:8,6 +chr6 78087069 . A T 0 PASS DP=49;GPV=1;SPV=0.012665;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,3:8,3 +chr6 78117123 . G A 0 PASS DP=64;GPV=1;SPV=2.158e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,8:9,2 +chr6 79102143 . C A 0 PASS DP=44;GPV=1;SPV=0.013043;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,6:4,1:4,5 +chr6 81776487 . CA C 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:6,7:0,1 +chr6 82919438 . C T 0 PASS DP=42;GPV=1;SPV=0.001632;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,3:5,8 +chr6 84249054 . T TTTTC 0 PASS DP=42;GPV=1;SPV=0.0034481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:5,2:8,5 +chr6 84402981 . CAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,3:4,4 +chr6 84491047 . CT C 0 PASS DP=27;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,8:1,5:1,3 +chr6 84995233 . A T 0 PASS DP=57;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,1:12,6 +chr6 85023514 . T TAAA 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,2:4,2 +chr6 85654481 . CAA C 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2 +chr6 87128727 . ATCATATG A 0 PASS DP=33;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:1,3:9,7 +chr6 90323992 . C CT 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr6 91172037 . C CT 0 PASS DP=29;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,6:1,5:0,1 +chr6 91436194 . TTGTG T 0 PASS DP=33;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:2,5:2,3 +chr6 93168016 . A C 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,7:6,2 +chr6 93556958 . A ATG 0 PASS DP=20;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr6 93699539 . C T 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,5:10,3 +chr6 94335781 . G GAGAT 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr6 96100250 . C A 0 PASS DP=35;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:5,1:2,1 +chr6 97976066 . T G 0 PASS DP=57;GPV=1;SPV=0.00029607;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:13,7:6,4 +chr6 98359516 . A T 0 PASS DP=53;GPV=1;SPV=0.1129;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,3:7,2:6,1 +chr6 99385976 . CA C 0 PASS DP=29;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,6:3,2 +chr6 100074033 . T A 0 PASS DP=63;GPV=1;SPV=0.00050477;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,7:12,3 +chr6 102373125 . AAT A 0 PASS DP=57;GPV=1;SPV=0.0039611;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,13:8,4:12,9 +chr6 102726156 . C T 0 PASS DP=44;GPV=1;SPV=0.00013031;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,3:3,6 +chr6 102763104 . C T 0 PASS DP=66;GPV=1;SPV=2.9968e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,10:8,4 +chr6 102790516 . C T 0 PASS DP=53;GPV=1;SPV=0.0010576;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:5,2:13,7 +chr6 104394911 . C T 0 PASS DP=57;GPV=1;SPV=0.00069928;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,5:12,6 +chr6 105886762 . T A 0 PASS DP=38;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:7,2:2,3 +chr6 106517435 . C CACACATATATAT 0 PASS DP=43;GPV=1;SPV=0.019715;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:13,5:6,4 +chr6 107177131 . CTT C 0 PASS DP=29;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:5,7:2,2 +chr6 108022016 . TA T 0 PASS DP=68;GPV=1;SPV=0.101;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,1:17,3 +chr6 109655627 . G T 0 PASS DP=56;GPV=1;SPV=2.706e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:10,4:4,13 +chr6 110553287 . TA T 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:7,8:5,1 +chr6 111163146 . ATT A 0 PASS DP=34;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr6 113314517 . G A 0 PASS DP=42;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:11,3:6,1 +chr6 113611727 . G A 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chr6 113666600 . A G 0 PASS DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:5,2:0,0 +chr6 114459985 . G GT 0 PASS DP=24;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2 +chr6 117398476 . C T 0 PASS DP=58;GPV=1;SPV=0.00023992;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,7:12,4 +chr6 117452883 . G A 0 PASS DP=62;GPV=1;SPV=0.00091926;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,3:10,5 +chr6 117609264 . C CT 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,5:6,3 +chr6 118070992 . G A 0 PASS DP=26;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:3,1:5,5 +chr6 118989801 . C CATTTATTT 0 PASS DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,4:13,3 +chr6 122357957 . G A 0 PASS DP=33;GPV=1;SPV=0.010883;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,13:0,8:3,5 +chr6 122799961 . C CTT 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,4:7,1 +chr6 123266483 . A AAT 0 PASS DP=25;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:2,1:3,3 +chr6 123799546 . CATATATAT C 0 PASS DP=25;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1 +chr6 126147120 . A G 0 PASS DP=41;GPV=1;SPV=0.0081185;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,3:3,4 +chr6 126287669 . T A 0 PASS DP=39;GPV=1;SPV=1.2131e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:5,20:2,10:3,10 +chr6 127263211 . G T 0 PASS DP=48;GPV=1;SPV=0.00015537;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr6 129048489 . T C 0 PASS DP=30;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:4,1:9,5 +chr6 130861874 . C CAAAAAA 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1 +chr6 132589742 . CAAAAAAAAAA C 0 PASS DP=23;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:1,4:1,1 +chr6 133394284 . G A 0 PASS DP=27;GPV=1;SPV=0.016317;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:2,1:0,4 +chr6 134528947 . A C 0 PASS DP=32;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:1,1:1,1 +chr6 134754863 . C CT 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:10,4:1,1 +chr6 134926822 . A G 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,7:8,1 +chr6 136381917 . C G 0 PASS DP=43;GPV=1;SPV=0.097397;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,2:9,4 +chr6 137377819 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr6 143042681 . TA T 0 PASS DP=68;GPV=1;SPV=0.0021;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,5:13,2 +chr6 145396551 . CTCAGGTACATAAACTTTGCAATGTCTGCCT C 0 PASS DP=58;GPV=1;SPV=0.045916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,3:9,3 +chr6 147790792 . C T 0 PASS DP=19;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:1,2:5,1 +chr6 147863838 . CT C 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,2:2,2 +chr6 148568676 . A ATATC 0 PASS DP=21;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:1,4:3,1 +chr6 150886435 . CA C 0 PASS DP=28;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:12,4:1,1 +chr6 151208830 . G T 0 PASS DP=60;GPV=1;SPV=7.799e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:10,9:7,7 +chr6 151740285 . A ATT 0 PASS DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,1:5,4 +chr6 152697504 . A T 0 PASS DP=45;GPV=1;SPV=0.042555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:7,6:7,2 +chr6 154331411 . GAGAA G 0 PASS DP=39;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2 +chr6 154426346 . T TTTTATTTA 0 PASS DP=59;GPV=1;SPV=0.017962;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,7:12,4 +chr6 155502665 . C T 0 PASS DP=57;GPV=1;SPV=7.5695e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,5:6,5 +chr6 155828878 . C CATATATATATAT 0 PASS DP=34;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,5:3,4:2,1 +chr6 156433103 . ATATAT A 0 PASS DP=32;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:0,0:4,2 +chr6 156880739 . C CA 0 PASS DP=22;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,3:4,1 +chr6 157507369 . C T 0 PASS DP=45;GPV=1;SPV=0.00023911;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:6,5:3,11 +chr6 158029042 . C CCCTGCAGAGGGTGGGCCCTGGGTCT 0 PASS DP=44;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr6 159269210 . T C 0 PASS DP=46;GPV=1;SPV=0.026061;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:3,3:12,6 +chr6 159269281 . TATCTATCTATCC T 0 PASS DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,3:9,4 +chr6 159408174 . T TA 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr6 160958101 . C CTATATATA 0 PASS DP=26;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr6 161453741 . T C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr6 162279405 . AAAAG A 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr6 162667953 . A G 0 PASS DP=77;GPV=1;SPV=4.0465e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:12,15:11,7 +chr6 164719165 . C T 0 PASS DP=58;GPV=1;SPV=0.00017983;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:15,23:11,14:4,9 +chr6 165202989 . C T 0 PASS DP=68;GPV=1;SPV=0.055233;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:20,2:14,3 +chr6 165306915 . T TTG 0 PASS DP=32;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,7:5,1 +chr6 165943346 . G GAAAAGAAAGAAAGAAAGAAAGAAAGAA 0 PASS DP=36;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,6:4,1 +chr6 166304496 . G GGCTGAAATTACCAT 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1 +chr6 166650231 . A T 0 PASS DP=50;GPV=1;SPV=0.00037902;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,4:7,4 +chr6 167490297 . C CAA 0 PASS DP=34;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,5:2,4:5,1 +chr6 168364594 . C T 0 PASS DP=43;GPV=1;SPV=0.0069124;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:3,9:11,1 +chr6 168572298 . T C 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr6 168680341 . C T 0 PASS DP=48;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,3:0,1:0,2 +chr6 169514544 . GA G 0 PASS DP=55;GPV=1;SPV=0.028551;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,2:5,4 +chr6 169895224 . G GA 0 PASS DP=67;GPV=1;SPV=8.0768e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,5:7,5 +chr7 31456 . T G 0 PASS DP=80;GPV=1;SPV=0.012958;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,1:15,7 +chr7 1693824 . C T 0 PASS DP=72;GPV=1;SPV=2.5955e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,7:9,7 +chr7 1903563 . G A 0 PASS DP=28;GPV=1;SPV=0.024017;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,4:5,4 +chr7 4448610 . AT A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,1:9,5 +chr7 4819072 . C CT 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,2:3,4 +chr7 4973319 . C CT 0 PASS DP=26;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,4:2,1 +chr7 5484639 . A AT 0 PASS DP=44;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:5,6:8,4 +chr7 5857708 . C T 0 PASS DP=42;GPV=1;SPV=0.029938;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,5:12,6 +chr7 6313076 . ATT A 0 PASS DP=46;GPV=1;SPV=0.047337;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3 +chr7 6743832 . G A 0 PASS DP=53;GPV=1;SPV=0.027715;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:18,2:8,5 +chr7 7022753 . G A 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,1:3,3 +chr7 8410432 . TATATATATA T 0 PASS DP=16;GPV=1;SPV=0.0034965;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:0,3:2,3 +chr7 12538980 . C A 0 PASS DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6 +chr7 12608319 . ATG A 0 PASS DP=54;GPV=1;SPV=0.02313;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chr7 12621637 . GT G 0 PASS DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,8:1,1 +chr7 13476115 . A ATTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.0036508;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,9:0,8:1,1 +chr7 14211317 . TA T 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3 +chr7 16219670 . C T 0 PASS DP=26;GPV=1;SPV=0.021739;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2 +chr7 16352879 . GCACA G 0 PASS DP=28;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,5:2,3:0,2 +chr7 16551767 . TAA T 0 PASS DP=59;GPV=1;SPV=0.0034707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,3:8,4 +chr7 16556070 . TA T 0 PASS DP=57;GPV=1;SPV=0.00094545;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,5:8,3 +chr7 16556706 . GT G 0 PASS DP=79;GPV=1;SPV=9.1018e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:13,5:11,5 +chr7 18799038 . AAGACACACACACACAC A 0 PASS DP=54;GPV=1;SPV=0.0031186;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:10,6:4,6 +chr7 18817299 . G T 0 PASS DP=58;GPV=1;SPV=8.0727e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:5,8:14,6 +chr7 21218988 . G A 0 PASS DP=38;GPV=1;SPV=0.027772;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,5:4,2:1,3 +chr7 21570883 . TA T 0 PASS DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,5:9,2 +chr7 21619979 . C G 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chr7 22491415 . G A 0 PASS DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5 +chr7 22592889 . TAGGAAAGAATGTTGCCCTGTAG T 0 PASS DP=42;GPV=1;SPV=0.00031586;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:4,4:8,7 +chr7 23618563 . A T 0 PASS DP=39;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:7,4:10,3 +chr7 23630505 . A G 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,1:11,3 +chr7 24117614 . G A 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,4:9,4 +chr7 24152155 . G A 0 PASS DP=45;GPV=1;SPV=0.0076269;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2 +chr7 24377884 . T C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2 +chr7 25084082 . CT C 0 PASS DP=24;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr7 26284380 . GTATA G 0 PASS DP=38;GPV=1;SPV=0.031941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:11,4:1,2 +chr7 26317659 . CT C 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr7 27309471 . C T 0 PASS DP=68;GPV=1;SPV=1.1295e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,8:12,6 +chr7 29541131 . A G 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr7 30006116 . CT C 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:3,6:2,2 +chr7 31192393 . CAAAAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4 +chr7 33525617 . C T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,2:13,2 +chr7 34400745 . C CTT 0 PASS DP=26;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,3:3,1 +chr7 34686960 . CA C 0 PASS DP=39;GPV=1;SPV=0.029051;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:8,4:1,2 +chr7 35281894 . CA C 0 PASS DP=33;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:3,7:3,1 +chr7 36272519 . T G 0 PASS DP=54;GPV=1;SPV=0.063676;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:18,4:9,1 +chr7 38344493 . G A 0 PASS DP=44;GPV=1;SPV=0.13372;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:16,1:4,2 +chr7 38408752 . A C 0 PASS DP=41;GPV=1;SPV=0.39286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:2,2:7,2 +chr7 39930838 . A T 0 PASS DP=47;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:2,1:2,1 +chr7 40064817 . T C 0 PASS DP=39;GPV=1;SPV=0.00042089;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:7,7:4,4 +chr7 43028716 . G A 0 PASS DP=68;GPV=1;SPV=1.1295e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:13,4:7,10 +chr7 43945776 . CT C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3 +chr7 44872252 . G A 0 PASS DP=71;GPV=1;SPV=9.1148e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:9,15:9,7 +chr7 45782740 . AT A 0 PASS DP=29;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:6,2:2,3 +chr7 45817605 . A C 0 PASS DP=31;GPV=1;SPV=0.022724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,1:4,3 +chr7 46142778 . T G 0 PASS DP=35;GPV=1;SPV=0.01921;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2 +chr7 48759056 . A AACACACACACACAC 0 PASS DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:10,3:1,1 +chr7 50539850 . C T 0 PASS DP=69;GPV=1;SPV=0.00032942;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,7:11,4 +chr7 51896176 . C CTTAAGCAA 0 PASS DP=60;GPV=1;SPV=0.0026395;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,8:8,2:14,6 +chr7 51896180 . T TGGATTAAGG 0 PASS DP=55;GPV=1;SPV=0.008813;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:9,1:13,6 +chr7 51896182 . T G 0 PASS DP=57;GPV=1;SPV=0.0067299;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:8,2:14,5 +chr7 52353057 . A C 0 PASS DP=86;GPV=1;SPV=1.6121e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:14,14:12,8 +chr7 54254829 . GT G 0 PASS DP=45;GPV=1;SPV=0.0014755;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,6:6,3 +chr7 56166301 . C CAA 0 PASS DP=24;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:1,8:3,1 +chr7 56768611 . C CA 0 PASS DP=34;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1 +chr7 56986716 . C G 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,5:6,3 +chr7 57034955 . C A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2 +chr7 58069949 . C T 0 PASS DP=164;GPV=1;SPV=0.0235;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:41,9:19,1 +chr7 58074607 . A G 0 PASS DP=217;GPV=1;SPV=0.024322;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:85,15:58,7:27,8 +chr7 58767509 . T G 0 PASS DP=24;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:0,0:7,2 +chr7 58894373 . A G 0 PASS DP=304;GPV=1;SPV=0.00010709;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:96,34:32,7:64,27 +chr7 60031408 . A T 0 PASS DP=148;GPV=1;SPV=0.015827;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:60,13:45,8:15,5 +chr7 60047386 . C G 0 PASS DP=453;GPV=1;SPV=0.020488;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:210,25:146,14:64,11 +chr7 60914309 . GATGATGATTCCTTTCGATATCATTTGATGATTCCATTCAATTCCATTCT G 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,3:16,1 +chr7 60966013 . G T 0 PASS DP=149;GPV=1;SPV=0.0069542;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:26,4:36,7 +chr7 61419712 . CT C 0 PASS DP=61;GPV=1;SPV=0.02424;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,2:12,2 +chr7 62273765 . G A 0 PASS DP=82;GPV=1;SPV=0.035271;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:14,3:18,3 +chr7 62331223 . G A 0 PASS DP=64;GPV=1;SPV=0.0001759;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,3:12,10 +chr7 62431487 . G T 0 PASS DP=110;GPV=1;SPV=0.039578;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:21,10:24,2 +chr7 63757346 . C T 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr7 63759423 . C T 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,2:8,2 +chr7 63759567 . C A 0 PASS DP=50;GPV=1;SPV=0.119;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr7 64089741 . C T 0 PASS DP=79;GPV=1;SPV=1.7368e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7 +chr7 64096569 . G A 0 PASS DP=42;GPV=1;SPV=0.0028734;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:10,4:3,3 +chr7 65099169 . G A 0 PASS DP=67;GPV=1;SPV=0.045858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4 +chr7 65101107 . C CT 0 PASS DP=31;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:4,8:3,1 +chr7 65784392 . T C 0 PASS DP=74;GPV=1;SPV=0.0092406;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,9:10,1 +chr7 66324807 . A C 0 PASS DP=41;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:1,1:1,1 +chr7 67225790 . G A 0 PASS DP=48;GPV=1;SPV=0.011304;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,4:11,4 +chr7 67712804 . T G 0 PASS DP=49;GPV=1;SPV=0.045385;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,2:7,5 +chr7 67730877 . TAG T 0 PASS DP=29;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1 +chr7 67967899 . A ATTAT 0 PASS DP=53;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,5:10,4:8,1 +chr7 68476999 . A ATG 0 PASS DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,6:7,1 +chr7 69021853 . T C 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,1:11,3 +chr7 69073218 . CT C 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,8:6,1 +chr7 69927186 . T TTATATA 0 PASS DP=44;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3 +chr7 71447728 . T A 0 PASS DP=60;GPV=1;SPV=8.1411e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,15:10,8:10,7 +chr7 72588022 . A G 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,6:9,1 +chr7 72602750 . T A 0 PASS DP=73;GPV=1;SPV=0.0061179;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:18,7:7,1 +chr7 72615348 . G GGA 0 PASS DP=62;GPV=1;SPV=0.016937;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:17,3:7,5 +chr7 72713300 . CA C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr7 73156587 . GC G 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,1:4,3 +chr7 73639000 . GA G 0 PASS DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,8:11,1 +chr7 74336891 . T TTTG 0 PASS DP=29;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:6,4:2,1 +chr7 74410895 . AGAGAGAAG A 0 PASS DP=34;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2 +chr7 74460418 . T A 0 PASS DP=75;GPV=1;SPV=9.5049e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,8:13,5 +chr7 75715458 . C G 0 PASS DP=46;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:9,1:4,4 +chr7 75723951 . G T 0 PASS DP=46;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,4:6,3:1,1 +chr7 76514912 . A C 0 PASS DP=41;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,3:0,1:0,2 +chr7 76757277 . T TTTTCTTTCTTTCTTTCTTTCTTTCTTTC 0 PASS DP=20;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:1,5:3,1 +chr7 76882331 . G GAGAAA 0 PASS DP=36;GPV=1;SPV=0.18281;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,6:10,3:8,3 +chr7 76993485 . T C 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,1:15,4 +chr7 79653897 . G T 0 PASS DP=62;GPV=1;SPV=2.8158e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:12,5:7,9 +chr7 83387850 . GT G 0 PASS DP=48;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,4:6,3:11,1 +chr7 83515293 . GA G 0 PASS DP=36;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,5:2,3 +chr7 86187771 . T C 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,2:4,2 +chr7 87999987 . TA T 0 PASS DP=39;GPV=1;SPV=0.0041611;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,5:6,3 +chr7 88127476 . C G 0 PASS DP=70;GPV=1;SPV=1.2075e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,8:9,5 +chr7 88266099 . C T 0 PASS DP=50;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,4:7,7 +chr7 88814447 . A AAC 0 PASS DP=38;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:4,5:2,3 +chr7 89176587 . C T 0 PASS DP=19;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,3:5,2:1,1 +chr7 90331378 . G A 0 PASS DP=52;GPV=1;SPV=7.9892e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,5:5,4 +chr7 91729131 . G GGAAGGGA 0 PASS DP=20;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,2:2,2:0,0 +chr7 94339211 . G A 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,5:13,4 +chr7 94376048 . A C 0 PASS DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr7 95100844 . AT A 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:4,6:0,1 +chr7 95580039 . TTATATATATATATATATATA T 0 PASS DP=20;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr7 98889555 . TA T 0 PASS DP=42;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:8,6:3,3 +chr7 98889557 . A T 0 PASS DP=36;GPV=1;SPV=0.0088061;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:5,4:3,3 +chr7 101063702 . T C 0 PASS DP=40;GPV=1;SPV=0.083916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,5:3,2:2,3 +chr7 101825753 . C CTGTG 0 PASS DP=41;GPV=1;SPV=0.0054096;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:7,5:2,2 +chr7 102488756 . A G 0 PASS DP=113;GPV=1;SPV=0.034205;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:22,6:24,4 +chr7 102490814 . C T 0 PASS DP=101;GPV=1;SPV=0.034752;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:17,4:18,4 +chr7 102502759 . C CA 0 PASS DP=110;GPV=1;SPV=0.0096458;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:50,10:28,6:22,4 +chr7 102592517 . C A 0 PASS DP=91;GPV=1;SPV=0.014313;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:35,9:7,1 +chr7 102605663 . G A 0 PASS DP=186;GPV=1;SPV=0.0092848;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:71,14:48,8:23,6 +chr7 105492052 . CAA C 0 PASS DP=39;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,7:5,6:4,1 +chr7 106628825 . C CTT 0 PASS DP=23;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:1,3:2,3 +chr7 107722685 . C CA 0 PASS DP=34;GPV=1;SPV=0.0045822;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,9:6,4:4,5 +chr7 108024743 . G A 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2 +chr7 108749132 . C T 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,6:17,6 +chr7 108884387 . CA C 0 PASS DP=46;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,7:8,4:1,3 +chr7 110802341 . G A 0 PASS DP=45;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:4,2:3,2 +chr7 110802349 . G A 0 PASS DP=40;GPV=1;SPV=0.028708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,4:2,3:4,1 +chr7 111217126 . T A 0 PASS DP=45;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:4,2:5,2 +chr7 111632668 . C CT 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1 +chr7 112445062 . CT C 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2 +chr7 113840324 . G T 0 PASS DP=59;GPV=1;SPV=0.00028547;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:13,7:9,7 +chr7 114176298 . T TTC 0 PASS DP=32;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,3:0,2:1,1 +chr7 116288619 . A ATTTTT 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1 +chr7 118804763 . A G 0 PASS DP=56;GPV=1;SPV=9.294e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5 +chr7 118952191 . A T 0 PASS DP=52;GPV=1;SPV=7.2318e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,4:3,6 +chr7 119014250 . G GTA 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,3:5,1 +chr7 119221565 . A AT 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr7 119839161 . C G 0 PASS DP=57;GPV=1;SPV=0.00019536;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,7:8,3 +chr7 120768774 . AAAAG A 0 PASS DP=37;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:6,2:5,4 +chr7 122150366 . C T 0 PASS DP=45;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,3:1,2:0,1 +chr7 125349432 . GTA G 0 PASS DP=52;GPV=1;SPV=0.00057944;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,4:6,3 +chr7 126019610 . A T 0 PASS DP=55;GPV=1;SPV=0.0015164;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,5:9,5 +chr7 127483685 . AATAT A 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,3:3,1 +chr7 128512979 . C CTTTTT 0 PASS DP=41;GPV=1;SPV=0.0064613;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3 +chr7 129033906 . C CA 0 PASS DP=28;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:9,4:2,1 +chr7 130626708 . C A 0 PASS DP=70;GPV=1;SPV=4.237e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:11,3:8,11 +chr7 130940445 . CAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3 +chr7 131444745 . TAGTAGTAGTAGTAGA T 0 PASS DP=37;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,3:3,5 +chr7 131868548 . A T 0 PASS DP=34;GPV=1;SPV=0.0044739;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:3,5:2,1 +chr7 132711346 . T TGAGAGAGAGA 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr7 133076058 . CA C 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,9:3,1 +chr7 133397331 . T C 0 PASS DP=53;GPV=1;SPV=1.7738e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,7:7,4 +chr7 133649465 . T TTTTTTC 0 PASS DP=44;GPV=1;SPV=0.027357;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:8,2:9,3 +chr7 133745729 . T C 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,1:4,9 +chr7 134527015 . C T 0 PASS DP=29;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:0,1:4,3 +chr7 136880046 . C CT 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr7 137023785 . T TGATA 0 PASS DP=61;GPV=1;SPV=0.024656;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,4:5,3:7,1 +chr7 137324435 . T A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2 +chr7 137640006 . G GT 0 PASS DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,5:8,1 +chr7 137696766 . A G 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,9:16,2 +chr7 138654500 . G T 0 PASS DP=36;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:5,3:3,3 +chr7 139110664 . TA T 0 PASS DP=46;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,7:4,6:7,1 +chr7 143767673 . G A 0 PASS DP=79;GPV=1;SPV=0.036975;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:17,5:8,1 +chr7 144204888 . C T 0 PASS DP=207;GPV=1;SPV=0.044454;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:81,15:46,8:35,7 +chr7 144362416 . C T 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr7 144530700 . C A 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:12,5:8,5 +chr7 145746199 . A C 0 PASS DP=41;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,4:9,2 +chr7 146555527 . T G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:22,2:12,2 +chr7 147198955 . CT C 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:13,4:1,3 +chr7 148283259 . G GA 0 PASS DP=18;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2 +chr7 149906416 . T C 0 PASS DP=20;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,2:0,1:2,1 +chr7 149973119 . A G 0 PASS DP=64;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,4:15,1 +chr7 150041507 . A G 0 PASS DP=39;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,3:4,1:1,2 +chr7 150158985 . A AGG 0 PASS DP=66;GPV=1;SPV=0.056165;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1 +chr7 150366215 . A G 0 PASS DP=59;GPV=1;SPV=1.944e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,7:7,8 +chr7 150987805 . T A 0 PASS DP=60;GPV=1;SPV=0.27198;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:8,4:2,1:6,3 +chr7 151443970 . A AT 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2 +chr7 152379913 . C G 0 PASS DP=180;GPV=1;SPV=0.0019945;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:75,13:42,5:33,8 +chr7 152796880 . T G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr7 153694853 . TAA T 0 PASS DP=29;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,5:2,1 +chr7 156205191 . T G 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr7 156886047 . G GA 0 PASS DP=29;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:0,7:2,1 +chr7 157648793 . C T 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3 +chr7 158152191 . A AAAAAAT 0 PASS DP=35;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:6,3:3,6 +chr7 158720933 . T TA 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1 +chr7 158720943 . TA T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,4:8,3 +chr7 159195589 . CA C 0 PASS DP=34;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr8 200941 . G T 0 PASS DP=54;GPV=1;SPV=0.0041252;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,5:10,3 +chr8 933541 . T C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr8 1690703 . C CAAAAAA 0 PASS DP=23;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1 +chr8 2446587 . G A 0 PASS DP=83;GPV=1;SPV=0.033154;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:20,4:18,1 +chr8 3262190 . T A 0 PASS DP=36;GPV=1;SPV=0.023173;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr8 3308731 . A AATTT 0 PASS DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:1,3:2,5 +chr8 3712438 . CAGACAGAG C 0 PASS DP=57;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,5:13,4:17,1 +chr8 4933931 . G C 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:3,3:9,3 +chr8 5038381 . AT A 0 PASS DP=49;GPV=1;SPV=0.0013537;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2 +chr8 6592821 . T A 0 PASS DP=32;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:2,1:2,1 +chr8 6874118 . T TAC 0 PASS DP=40;GPV=1;SPV=0.023613;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3 +chr8 7280617 . T A 0 PASS DP=36;GPV=1;SPV=0.0063539;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,3:8,3 +chr8 7388774 . A G 0 PASS DP=73;GPV=1;SPV=0.013586;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3 +chr8 7445427 . A G 0 PASS DP=121;GPV=1;SPV=0.042142;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:23,8:23,2 +chr8 7590600 . C T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,2:19,2 +chr8 7741855 . G A 0 PASS DP=222;GPV=1;SPV=0.031602;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:83,19:28,9:55,10 +chr8 7765543 . C A 0 PASS DP=357;GPV=1;SPV=0.03449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:143,16:58,4:85,12 +chr8 7767717 . T C 0 PASS DP=107;GPV=1;SPV=0.047471;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:7,1:35,6 +chr8 7894605 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:18,4:1,0 +chr8 7905079 . C G 0 PASS DP=26;GPV=1;SPV=0.0069996;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,7:0,1:6,6 +chr8 7949368 . C G 0 PASS DP=25;GPV=1;SPV=0.0079095;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,1:1,7 +chr8 8023753 . T G 0 PASS DP=325;GPV=1;SPV=0.0016451;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:129,36:55,19:74,17 +chr8 8037828 . A G 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,2:12,2 +chr8 8068506 . G C 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr8 8074498 . A G 0 PASS DP=120;GPV=1;SPV=0.033059;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:22,1:27,7 +chr8 8161332 . C A 0 PASS DP=123;GPV=1;SPV=0.032509;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:36,7:27,2 +chr8 9398157 . C T 0 PASS DP=66;GPV=1;SPV=8.543e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,8:11,8 +chr8 10219867 . T G 0 PASS DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2 +chr8 10991891 . G A 0 PASS DP=61;GPV=1;SPV=0.0010554;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,3:13,5 +chr8 11180735 . A T 0 PASS DP=49;GPV=1;SPV=0.0054457;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:8,6:10,10 +chr8 12189987 . A G 0 PASS DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr8 12449811 . A ATG 0 PASS DP=120;GPV=1;SPV=0.03999;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:41,13:24,11:17,2 +chr8 12483538 . C A 0 PASS DP=119;GPV=1;SPV=0.011673;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:22,9:17,5 +chr8 12495803 . C T 0 PASS DP=129;GPV=1;SPV=0.046457;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:27,10:22,3 +chr8 12497170 . T C 0 PASS DP=19;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:1,3:5,1 +chr8 12501192 . G A 0 PASS DP=36;GPV=1;SPV=0.057585;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2 +chr8 12509931 . C T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr8 12516289 . A C 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr8 12552262 . A G 0 PASS DP=215;GPV=1;SPV=0.033288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:44,14:42,4 +chr8 12577813 . T C 0 PASS DP=209;GPV=1;SPV=0.0068415;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:82,25:37,10:45,15 +chr8 12577823 . A G 0 PASS DP=217;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:88,20:36,13:52,7 +chr8 12584810 . G A 0 PASS DP=202;GPV=1;SPV=0.012888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:44,12:40,7 +chr8 12588896 . T C 0 PASS DP=206;GPV=1;SPV=0.03851;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:90,17:42,9:48,8 +chr8 12594078 . A C 0 PASS DP=171;GPV=1;SPV=0.010693;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:70,18:41,9:29,9 +chr8 12596034 . TC T 0 PASS DP=198;GPV=1;SPV=0.016696;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,18:39,9:38,9 +chr8 12884712 . A AACACACACACAC 0 PASS DP=35;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:3,5:2,2 +chr8 13753701 . C T 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:2,6:14,5 +chr8 13935838 . A AT 0 PASS DP=46;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:3,4:4,4 +chr8 15558792 . A G 0 PASS DP=49;GPV=1;SPV=0.0094436;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,10:11,3 +chr8 15923495 . C A 0 PASS DP=31;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:4,1:1,2 +chr8 16926818 . A ATGTAT 0 PASS DP=27;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,4:1,3:1,1 +chr8 18271057 . G A 0 PASS DP=49;GPV=1;SPV=0.0013228;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,7:8,10 +chr8 18991373 . T TACAC 0 PASS DP=32;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,5:0,3:2,2 +chr8 19666793 . AAGAAAGAAAGAAAGAAAGAGAG A 0 PASS DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr8 20199604 . GT G 0 PASS DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:14,3:3,3 +chr8 20516661 . A G 0 PASS DP=31;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,4:3,1:2,3 +chr8 20936544 . C CAAAAAAAAAAA 0 PASS DP=17;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0 +chr8 22106419 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr8 22649850 . C T 0 PASS DP=49;GPV=1;SPV=0.0094041;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:9,1:3,4 +chr8 22765825 . T C 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr8 23876294 . G A 0 PASS DP=20;GPV=1;SPV=0.0055944;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:0,3:1,3 +chr8 24758151 . G A 0 PASS DP=64;GPV=1;SPV=1.3892e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:5,6:8,10 +chr8 24924432 . T C 0 PASS DP=64;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,0:0,2 +chr8 26618315 . C CT 0 PASS DP=47;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,2:11,8 +chr8 27021715 . T C 0 PASS DP=37;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:1,2:0,0 +chr8 32366679 . A G 0 PASS DP=29;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:2,3:3,1 +chr8 33433611 . C CA 0 PASS DP=38;GPV=1;SPV=0.0011632;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:2,8:7,3 +chr8 34993484 . T A 0 PASS DP=52;GPV=1;SPV=4.6796e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:3,4:11,8 +chr8 35551220 . G A 0 PASS DP=59;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,1:11,5 +chr8 35864646 . T TAC 0 PASS DP=20;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,4:0,1:0,3 +chr8 36225747 . CA C 0 PASS DP=36;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1 +chr8 37657098 . TAC T 0 PASS DP=43;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:4,6:2,4 +chr8 38148813 . C T 0 PASS DP=53;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:0,2:0,2:0,0 +chr8 41504120 . T TAAA 0 PASS DP=51;GPV=1;SPV=0.0093361;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,12:13,9:4,3 +chr8 43972750 . G A 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr8 44142988 . T C 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:0,2:10,4 +chr8 44211094 . C T 0 PASS DP=43;GPV=1;SPV=0.10777;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:12,2:6,1 +chr8 45086951 . A T 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,6:6,1 +chr8 46208097 . C G 0 PASS DP=68;GPV=1;SPV=5.5231e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,7:11,4 +chr8 46279883 . A T 0 PASS DP=61;GPV=1;SPV=0.0011018;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,3:7,4 +chr8 46673421 . T TA 0 PASS DP=62;GPV=1;SPV=8.275e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:9,7:9,4 +chr8 47015050 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:5,5:2,2 +chr8 47648800 . G A 0 PASS DP=66;GPV=1;SPV=3.4255e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,7:7,7 +chr8 50961698 . C CT 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2 +chr8 52963543 . T TG 0 PASS DP=60;GPV=1;SPV=0.0076838;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:11,9:13,3 +chr8 54239104 . C T 0 PASS DP=56;GPV=1;SPV=0.00036687;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,7:9,4 +chr8 54547199 . C A 0 PASS DP=65;GPV=1;SPV=1.4566e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:11,8:5,3 +chr8 55755593 . T C 0 PASS DP=42;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:1,1:0,1 +chr8 55801582 . C CT 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2 +chr8 56285203 . CA C 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr8 57159303 . T TGACA 0 PASS DP=31;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,1:8,4 +chr8 57261742 . T TG 0 PASS DP=23;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1 +chr8 59389650 . A AACACAC 0 PASS DP=45;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,7:7,5:6,2 +chr8 60425281 . C A 0 PASS DP=72;GPV=1;SPV=0.0003586;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,6:7,2 +chr8 62385634 . C T 0 PASS DP=65;GPV=1;SPV=0.0048347;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,1:13,6 +chr8 62465619 . C A 0 PASS DP=62;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:8,7:12,8 +chr8 62870770 . T G 0 PASS DP=17;GPV=1;SPV=0.00041135;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,9:0,3:0,6 +chr8 63080732 . A T 0 PASS DP=49;GPV=1;SPV=0.0095174;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,3:6,5 +chr8 63285041 . TTCC T 0 PASS DP=49;GPV=1;SPV=0.11761;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:4,2:23,3 +chr8 63937992 . A G 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:5,5:4,8 +chr8 64396808 . C CT 0 PASS DP=34;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,4:7,1 +chr8 65126348 . A G 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2 +chr8 66867551 . AAAT A 0 PASS DP=46;GPV=1;SPV=0.033718;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,3:11,6 +chr8 67218207 . A AAATAT 0 PASS DP=35;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:2,1:5,4 +chr8 69444882 . A T 0 PASS DP=57;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2 +chr8 69931130 . C T 0 PASS DP=63;GPV=1;SPV=1.3365e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,18:5,11:6,7 +chr8 70378743 . T TAA 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,3:4,3 +chr8 71208737 . GA G 0 PASS DP=40;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:7,7:9,7 +chr8 72249868 . T A 0 PASS DP=46;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,4:1,2:4,2 +chr8 73106573 . G A 0 PASS DP=72;GPV=1;SPV=8.2714e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:8,3:13,7 +chr8 73256869 . C A 0 PASS DP=32;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,2:2,1:4,1 +chr8 73699451 . G T 0 PASS DP=61;GPV=1;SPV=3.3207e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,20:12,8:2,12 +chr8 74230754 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.013657;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:5,5:6,1 +chr8 75916038 . A G 0 PASS DP=59;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,8:3,3:4,5 +chr8 76140882 . G A 0 PASS DP=77;GPV=1;SPV=0.00025084;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:17,8:11,3 +chr8 77040107 . C T 0 PASS DP=49;GPV=1;SPV=0.076832;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,2:16,2 +chr8 77040108 . A G 0 PASS DP=50;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2 +chr8 78843814 . C CA 0 PASS DP=36;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:12,1:7,4 +chr8 80127839 . G C 0 PASS DP=40;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:3,4:5,3 +chr8 80329468 . T C 0 PASS DP=44;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:5,1:6,3 +chr8 82396759 . A C 0 PASS DP=63;GPV=1;SPV=1.1081e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,9:9,7 +chr8 83820094 . C T 0 PASS DP=53;GPV=1;SPV=0.00011224;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,5:8,4 +chr8 83945783 . CAA C 0 PASS DP=32;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:5,4:6,1 +chr8 83949234 . C T 0 PASS DP=53;GPV=1;SPV=0.00070506;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,7:9,2 +chr8 83959734 . G GCA 0 PASS DP=42;GPV=1;SPV=0.03809;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:16,6:2,1 +chr8 84903683 . T C 0 PASS DP=74;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:11,7:17,5 +chr8 85653042 . C G 0 PASS DP=307;GPV=1;SPV=0.0084042;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:127,31:62,12:65,19 +chr8 86362063 . C CAT 0 PASS DP=23;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,2:1,7 +chr8 88456275 . G A 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,9:8,3 +chr8 89751607 . A G 0 PASS DP=44;GPV=1;SPV=0.034681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3 +chr8 90070865 . T A 0 PASS DP=59;GPV=1;SPV=0.14511;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3 +chr8 90100331 . AT A 0 PASS DP=55;GPV=1;SPV=0.002101;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:6,4:9,2 +chr8 90522683 . G T 0 PASS DP=63;GPV=1;SPV=0.0011083;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,5:12,3 +chr8 92042938 . T G 0 PASS DP=65;GPV=1;SPV=1.5662e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,11:11,4 +chr8 92569374 . C T 0 PASS DP=61;GPV=1;SPV=0.00024975;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:12,1:4,7 +chr8 92626183 . GT G 0 PASS DP=33;GPV=1;SPV=0.025213;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:6,3:6,3 +chr8 93281553 . T A 0 PASS DP=67;GPV=1;SPV=8.1991e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:8,12:8,10 +chr8 97123152 . T A 0 PASS DP=41;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,3:13,2:6,1 +chr8 97347890 . C T 0 PASS DP=63;GPV=1;SPV=5.2542e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,5:5,3 +chr8 97621742 . TAAAAAA T 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr8 100093513 . C CA 0 PASS DP=60;GPV=1;SPV=0.00017406;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6 +chr8 100100291 . AT A 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,5:12,2 +chr8 100493756 . C CT 0 PASS DP=41;GPV=1;SPV=0.05251;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:9,2:6,2 +chr8 101124545 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,3:6,5 +chr8 102528666 . G T 0 PASS DP=51;GPV=1;SPV=0.0066001;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,3:7,2 +chr8 103992278 . T A 0 PASS DP=42;GPV=1;SPV=0.00014576;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,17:6,4:3,13 +chr8 107192192 . T A 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3 +chr8 107551396 . G GTA 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,3:8,6 +chr8 107551422 . G GTA 0 PASS DP=41;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:10,2:7,3 +chr8 108466442 . ATTTTT A 0 PASS DP=30;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,7:4,1 +chr8 109269251 . T G 0 PASS DP=65;GPV=1;SPV=0.0020965;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,7:12,8 +chr8 110395508 . T A 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:13,1:23,3 +chr8 110764485 . A C 0 PASS DP=35;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,3:2,1:1,2 +chr8 110953462 . G T 0 PASS DP=44;GPV=1;SPV=0.0052889;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,4:7,6 +chr8 111806622 . TC T 0 PASS DP=28;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,3:2,1:1,2 +chr8 111833170 . T TTAGATAGATAGA 0 PASS DP=31;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:4,4:4,1 +chr8 114796569 . C T 0 PASS DP=62;GPV=1;SPV=8.1682e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,5:9,8 +chr8 117558717 . C CTGTGTG 0 PASS DP=43;GPV=1;SPV=0.015516;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr8 117563233 . CAA C 0 PASS DP=37;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,4:3,2 +chr8 117748531 . C A 0 PASS DP=67;GPV=1;SPV=2.2591e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,7:12,6 +chr8 118637996 . G A 0 PASS DP=67;GPV=1;SPV=7.3076e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:6,8:11,1 +chr8 118840904 . G T 0 PASS DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:7,6:13,7 +chr8 122223529 . G T 0 PASS DP=52;GPV=1;SPV=0.0014372;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4 +chr8 123545013 . C CAA 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr8 123671946 . T C 0 PASS DP=45;GPV=1;SPV=0.00092217;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,5:8,4 +chr8 124302600 . AATAT A 0 PASS DP=34;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:4,2:6,3 +chr8 124302660 . AATAT A 0 PASS DP=32;GPV=1;SPV=0.22984;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:8,1:9,2 +chr8 125911787 . C T 0 PASS DP=65;GPV=1;SPV=3.8653e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,7:11,4 +chr8 127408101 . TATGG T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,2:4,4 +chr8 127408113 . T G 0 PASS DP=16;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:0,2:4,1 +chr8 128952445 . A T 0 PASS DP=63;GPV=1;SPV=1.261e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:13,5:5,9 +chr8 129184572 . AC A 0 PASS DP=34;GPV=1;SPV=0.0069381;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2 +chr8 129610157 . C T 0 PASS DP=47;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:2,7:2,6:0,1 +chr8 130758196 . CT C 0 PASS DP=40;GPV=1;SPV=0.006237;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,3:3,4 +chr8 132154192 . AGTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,3:6,2 +chr8 132782895 . G A 0 PASS DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,9:8,3 +chr8 133395213 . CT C 0 PASS DP=34;GPV=1;SPV=0.021372;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,1:3,4 +chr8 133928343 . T C 0 PASS DP=64;GPV=1;SPV=0.00017351;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,5:8,6 +chr8 135058547 . G A 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,4:12,6 +chr8 135117214 . A C 0 PASS DP=35;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:1,1:2,1 +chr8 137335629 . CT C 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr8 137446909 . A G 0 PASS DP=57;GPV=1;SPV=0.00012301;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5 +chr8 137610924 . A ATT 0 PASS DP=53;GPV=1;SPV=0.0053956;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3 +chr8 137863580 . C T 0 PASS DP=46;GPV=1;SPV=4.9323e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,7:5,1 +chr8 137905012 . G A 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:13,3:11,6 +chr8 138281212 . T C 0 PASS DP=61;GPV=1;SPV=0.00010966;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,9:13,7 +chr8 138314693 . C CAATAAATAAATAAATAAATA 0 PASS DP=21;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:2,4:2,1 +chr8 138795528 . G GACACACACACAC 0 PASS DP=46;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:13,3:7,1 +chr8 139068153 . C CA 0 PASS DP=33;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:5,7:5,1 +chr8 139223325 . CT C 0 PASS DP=47;GPV=1;SPV=0.00024036;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr8 139390449 . A AT 0 PASS DP=24;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,1:3,3 +chr8 140225168 . C G 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:15,4:4,5 +chr8 140283294 . C CTT 0 PASS DP=27;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,4:2,2 +chr8 140448153 . A G 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,3:11,1 +chr8 141345359 . T TA 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr8 142397036 . A C 0 PASS DP=28;GPV=1;SPV=0.087302;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:3,1:7,2 +chr8 143287678 . T G 0 PASS DP=82;GPV=1;SPV=0.014981;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:16,1:20,5 +chr8 143670217 . A C 0 PASS DP=68;GPV=1;SPV=4.8725e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:6,7:15,5 +chr9 13621 . C T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1 +chr9 55054 . A G 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,1:2,6 +chr9 56883 . T C 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3 +chr9 60874 . C T 0 PASS DP=84;GPV=1;SPV=0.0054804;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:16,6:17,7 +chr9 704992 . CAA C 0 PASS DP=31;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:6,3:2,2 +chr9 4213079 . G C 0 PASS DP=67;GPV=1;SPV=1.3459e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:8,9:10,8 +chr9 4270925 . GTGTGTGTGTA G 0 PASS DP=42;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,1:4,6 +chr9 5080727 . T G 0 PASS DP=57;GPV=1;SPV=4.0511e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:2,14:13,3 +chr9 5626226 . A AT 0 PASS DP=51;GPV=1;SPV=0.00080386;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:3,6:8,5 +chr9 6542885 . CA C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,6:2,1 +chr9 10511947 . CGT C 0 PASS DP=16;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,4:0,2:1,2 +chr9 10875971 . C T 0 PASS DP=66;GPV=1;SPV=1.364e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,10:6,6 +chr9 12799746 . C T 0 PASS DP=57;GPV=1;SPV=0.00012301;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,7:8,3 +chr9 13925346 . G A 0 PASS DP=72;GPV=1;SPV=0.00023686;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5 +chr9 15664695 . T G 0 PASS DP=32;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,3:5,1:1,2 +chr9 16059502 . TTTC T 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3 +chr9 16779114 . T TAA 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,4:6,2 +chr9 17668652 . A ATTTAT 0 PASS DP=52;GPV=1;SPV=0.01932;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,8:6,3 +chr9 18238768 . T A 0 PASS DP=71;GPV=1;SPV=2.0388e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,9:7,10 +chr9 18894345 . C CTTTTTTT 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:9,4:4,1 +chr9 20545096 . CAAA C 0 PASS DP=30;GPV=1;SPV=0.014049;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,4:5,1 +chr9 20974069 . T G 0 PASS DP=43;GPV=1;SPV=0.00092488;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,4:4,8 +chr9 21565186 . C CAG 0 PASS DP=48;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,4:7,5 +chr9 23263748 . G A 0 PASS DP=63;GPV=1;SPV=2.4608e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:4,12:12,3 +chr9 25102456 . G A 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,5:13,5 +chr9 25241546 . T A 0 PASS DP=52;GPV=1;SPV=0.00042492;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5 +chr9 25760556 . CT C 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr9 26233976 . GT G 0 PASS DP=77;GPV=1;SPV=1.3574e-07;SS=2;SSC=68;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:11,13:9,6 +chr9 27211204 . A AAT 0 PASS DP=50;GPV=1;SPV=0.018628;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,2:8,4 +chr9 27380785 . T G 0 PASS DP=44;GPV=1;SPV=0.0013149;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:2,3:10,4 +chr9 27635638 . CT C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr9 27797636 . AT A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,1:8,5 +chr9 28297829 . A C 0 PASS DP=62;GPV=1;SPV=0.00049368;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,3:13,6 +chr9 28498477 . C A 0 PASS DP=69;GPV=1;SPV=0.0028764;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:21,3:8,6 +chr9 30467575 . A C 0 PASS DP=53;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:1,3:1,2:0,1 +chr9 32360274 . A T 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr9 33157065 . C T 0 PASS DP=36;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:1,1:6,1 +chr9 33437246 . G T 0 PASS DP=47;GPV=1;SPV=0.0063848;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,4:11,9 +chr9 33579951 . G A 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,1:6,3 +chr9 35309222 . AGTGT A 0 PASS DP=44;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:3,8:1,2 +chr9 36216327 . A ATGTGTGTGTGTGTGTGTG 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:5,3:2,1 +chr9 38564762 . A G 0 PASS DP=57;GPV=1;SPV=0.0069576;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:15,4:5,5 +chr9 38825196 . T C 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 38973013 . T G 0 PASS DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:17,1:9,6 +chr9 39038729 . T C 0 PASS DP=140;GPV=1;SPV=0.04207;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:37,3:23,11 +chr9 39477841 . CAA C 0 PASS DP=57;GPV=1;SPV=0.025745;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,2:5,4 +chr9 39790829 . G A 0 PASS DP=85;GPV=1;SPV=0.033111;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:1,8:33,3 +chr9 39806065 . A G 0 PASS DP=64;GPV=1;SPV=0.040794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:18,4:6,4 +chr9 39811309 . T TA 0 PASS DP=145;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:63,17:31,8:32,9 +chr9 39817917 . A G 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,1:16,3 +chr9 40141902 . T A 0 PASS DP=41;GPV=1;SPV=0.10773;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,1:11,4 +chr9 40299040 . G A 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,3:2,5 +chr9 40887604 . C A 0 PASS DP=81;GPV=1;SPV=0.002391;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,7:12,1 +chr9 40984387 . A G 0 PASS DP=119;GPV=1;SPV=0.025831;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,7:26,5:25,2 +chr9 41055190 . AAGG A 0 PASS DP=59;GPV=1;SPV=0.014823;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4 +chr9 41124566 . C G 0 PASS DP=70;GPV=1;SPV=0.0045001;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:17,7:5,6 +chr9 41149757 . C T 0 PASS DP=79;GPV=1;SPV=0.034482;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:10,7:18,2 +chr9 41294007 . G A 0 PASS DP=161;GPV=1;SPV=0.015832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:29,3:40,11 +chr9 41390057 . AT A 0 PASS DP=52;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,4:6,4 +chr9 41496485 . GAAAGGA G 0 PASS DP=78;GPV=1;SPV=0.034215;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,6:28,4:3,2 +chr9 41527965 . C T 0 PASS DP=83;GPV=1;SPV=0.033733;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:17,5:15,3 +chr9 41661484 . G A 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chr9 41770012 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr9 41830987 . C T 0 PASS DP=188;GPV=1;SPV=0.012325;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:80,16:38,6:42,10 +chr9 41940481 . A G 0 PASS DP=153;GPV=1;SPV=0.0032578;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:63,24:34,12:29,12 +chr9 42027461 . T A 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1 +chr9 42286662 . G A 0 PASS DP=153;GPV=1;SPV=0.0019358;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:64,8:34,6:30,2 +chr9 42534142 . G A 0 PASS DP=94;GPV=1;SPV=0.014968;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:15,4:19,9 +chr9 42564238 . T C 0 PASS DP=20;GPV=1;SPV=0.014448;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr9 42990597 . C A 0 PASS DP=61;GPV=1;SPV=0.073271;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:16,2:16,3 +chr9 43008955 . T C 0 PASS DP=70;GPV=1;SPV=0.099673;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:15,1:21,3 +chr9 43398652 . C G 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4 +chr9 43450256 . C T 0 PASS DP=44;GPV=1;SPV=0.03569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,1:2,3 +chr9 43491159 . G T 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr9 43569176 . C A 0 PASS DP=68;GPV=1;SPV=0.033651;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:18,2:8,2 +chr9 44012425 . G C 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2 +chr9 44081441 . A T 0 PASS DP=73;GPV=1;SPV=0.01244;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:19,8:6,1 +chr9 45015567 . C G 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2 +chr9 45173488 . C A 0 PASS DP=90;GPV=1;SPV=0.04859;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:38,5:0,1 +chr9 60560821 . C A 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:0,1:16,6 +chr9 60655675 . A T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,2:4,4 +chr9 61534271 . A ATG 0 PASS DP=49;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,1:6,7 +chr9 61698971 . C CA 0 PASS DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:12,4:1,0 +chr9 61972395 . G A 0 PASS DP=32;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,4:8,5 +chr9 62578345 . C G 0 PASS DP=82;GPV=1;SPV=0.033589;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:15,1:20,6 +chr9 62804228 . G C 0 PASS DP=299;GPV=1;SPV=0.019582;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:132,16:52,4:80,12 +chr9 62804246 . T C 0 PASS DP=310;GPV=1;SPV=0.010327;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:135,19:53,6:82,13 +chr9 62805547 . C T 0 PASS DP=289;GPV=1;SPV=0.014771;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:115,22:63,12:52,10 +chr9 62816131 . C G 0 PASS DP=215;GPV=1;SPV=0.014587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:91,21:55,13:36,8 +chr9 62832112 . C T 0 PASS DP=165;GPV=1;SPV=0.041377;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:41,9:22,5 +chr9 62832215 . G T 0 PASS DP=284;GPV=1;SPV=0.033849;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:120,20:68,9:52,11 +chr9 62832227 . A G 0 PASS DP=259;GPV=1;SPV=0.021249;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:114,20:62,10:52,10 +chr9 62834514 . G A 0 PASS DP=350;GPV=1;SPV=0.027412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:156,20:79,7:77,13 +chr9 63271325 . C T 0 PASS DP=45;GPV=1;SPV=0.0076269;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,3:8,4 +chr9 63367584 . T C 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,1:2,6 +chr9 63767558 . A C 0 PASS DP=71;GPV=1;SPV=0.049649;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,1:13,8 +chr9 63794610 . A G 0 PASS DP=154;GPV=1;SPV=0.028344;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:35,9:29,1 +chr9 63852085 . A G 0 PASS DP=244;GPV=1;SPV=0.033866;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:95,18:44,6:51,12 +chr9 63875499 . C T 0 PASS DP=91;GPV=1;SPV=0.0026263;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,8:16,2 +chr9 64054984 . T A 0 PASS DP=130;GPV=1;SPV=0.0023845;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:55,8:23,3:32,5 +chr9 64364444 . C T 0 PASS DP=67;GPV=1;SPV=0.0031054;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:15,6:7,3 +chr9 64375257 . T C 0 PASS DP=73;GPV=1;SPV=0.067818;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr9 64475776 . A G 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr9 64543521 . C T 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,1:8,3 +chr9 64724833 . AAAT A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:13,3:10,1 +chr9 65559995 . G C 0 PASS DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:19,1:2,8 +chr9 66058425 . G A 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,2:11,7 +chr9 66058712 . C A 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3 +chr9 66234321 . A G 0 PASS DP=43;GPV=1;SPV=0.022983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,4:7,7 +chr9 66246635 . C T 0 PASS DP=80;GPV=1;SPV=0.011389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,2:12,9 +chr9 66343510 . C G 0 PASS DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:5,6:18,2 +chr9 66374592 . T A 0 PASS DP=88;GPV=1;SPV=0.030284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:15,10:19,3 +chr9 66817730 . G A 0 PASS DP=66;GPV=1;SPV=0.0088349;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,7:11,3 +chr9 66942755 . G A 0 PASS DP=51;GPV=1;SPV=0.0082692;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4 +chr9 66949045 . T C 0 PASS DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2 +chr9 66958756 . CAA C 0 PASS DP=32;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr9 67103214 . T G 0 PASS DP=41;GPV=1;SPV=0.0024876;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:6,2:6,11 +chr9 67165889 . A G 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,2:6,3 +chr9 67428816 . G GC 0 PASS DP=79;GPV=1;SPV=0.043261;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:22,3:6,2 +chr9 67563763 . A C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,4:2,3 +chr9 67709320 . A C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr9 67737196 . A G 0 PASS DP=101;GPV=1;SPV=0.010238;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:26,5:17,7 +chr9 68265354 . T C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr9 70008285 . A AGATAGATAGAT 0 PASS DP=73;GPV=1;SPV=0.020584;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,9:14,5:9,4 +chr9 70792518 . A T 0 PASS DP=44;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,3:10,2 +chr9 72205110 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:2,8:3,1 +chr9 72273869 . C CTCTGTG 0 PASS DP=41;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:5,5:3,1 +chr9 77164452 . CT C 0 PASS DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,6:4,1 +chr9 78715470 . A T 0 PASS DP=46;GPV=1;SPV=0.053922;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,5:1,2:5,3 +chr9 79155809 . C T 0 PASS DP=57;GPV=1;SPV=7.6484e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,21:7,14:9,7 +chr9 79835821 . C CA 0 PASS DP=27;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:3,3:5,2 +chr9 79891930 . C T 0 PASS DP=62;GPV=1;SPV=0.013673;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,4:14,3 +chr9 80561564 . A G 0 PASS DP=67;GPV=1;SPV=1.3459e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:10,10:8,7 +chr9 80678615 . CAAAA C 0 PASS DP=21;GPV=1;SPV=0.0067079;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:2,8:1,2 +chr9 80914871 . C T 0 PASS DP=57;GPV=1;SPV=0.00094384;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,4:11,9 +chr9 80949038 . T TAC 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,8:3,1 +chr9 81017936 . A T 0 PASS DP=62;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,4:6,1:10,3 +chr9 82212576 . A G 0 PASS DP=47;GPV=1;SPV=9.6434e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:7,8:2,3 +chr9 83350623 . C CA 0 PASS DP=32;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,5:2,1 +chr9 85248479 . ATG A 0 PASS DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,5:5,3 +chr9 85612007 . C A 0 PASS DP=61;GPV=1;SPV=3.1184e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,6:11,5 +chr9 85691522 . C CA 0 PASS DP=45;GPV=1;SPV=0.020538;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2 +chr9 86037438 . C CA 0 PASS DP=38;GPV=1;SPV=0.029984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,3:3,3 +chr9 86216454 . C CT 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1 +chr9 87387357 . T C 0 PASS DP=32;GPV=1;SPV=0.010876;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:6,5:4,1 +chr9 88264218 . G C 0 PASS DP=23;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:6,2:1,2 +chr9 89182522 . A AAAAAT 0 PASS DP=52;GPV=1;SPV=0.035241;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,4:7,3 +chr9 90541817 . TA T 0 PASS DP=48;GPV=1;SPV=0.0027337;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:5,4:5,7 +chr9 91562181 . AAAGGAAGG A 0 PASS DP=35;GPV=1;SPV=0.024328;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,4:2,2 +chr9 94308754 . TCAAAAAAAA T 0 PASS DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr9 94452715 . ATATATATATAATAGATATTATATATAAATATC A 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1 +chr9 96284215 . TAAAAA T 0 PASS DP=27;GPV=1;SPV=0.00094923;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:3,6:3,5 +chr9 96371474 . CAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,7:4,1 +chr9 96429027 . T TAC 0 PASS DP=35;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,4:4,2 +chr9 96603155 . G GAC 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,6:2,3 +chr9 97743548 . C A 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,1:8,4 +chr9 99195776 . AT A 0 PASS DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1 +chr9 99500142 . T C 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,5:11,1 +chr9 103728043 . T A 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,2:10,12 +chr9 104045357 . A C 0 PASS DP=22;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,3:0,1:2,2 +chr9 104690644 . C CA 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,4:7,2 +chr9 104696115 . G A 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,3:3,1:3,2 +chr9 107242263 . A AAG 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr9 107641702 . C T 0 PASS DP=52;GPV=1;SPV=0.00033576;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5 +chr9 108095796 . C CT 0 PASS DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,3:1,2 +chr9 108996155 . C T 0 PASS DP=41;GPV=1;SPV=0.0067968;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,5:8,6 +chr9 109249721 . T A 0 PASS DP=64;GPV=1;SPV=0.0013464;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2 +chr9 109357854 . C CA 0 PASS DP=29;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:7,4:4,1 +chr9 110313480 . C G 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:14,6:6,5 +chr9 112320312 . A T 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3 +chr9 112448507 . TCTTTCTTTCTTTCCTC T 0 PASS DP=34;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:3,5:7,6 +chr9 113000950 . G A 0 PASS DP=53;GPV=1;SPV=0.0012203;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5 +chr9 113050469 . A C 0 PASS DP=50;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:0,2:0,1:0,1 +chr9 113218379 . A T 0 PASS DP=44;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,5:3,4:3,1 +chr9 115355012 . C A 0 PASS DP=43;GPV=1;SPV=0.00043396;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,9:9,2 +chr9 116389810 . GT G 0 PASS DP=49;GPV=1;SPV=0.002854;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4 +chr9 116882828 . T TA 0 PASS DP=53;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:7,2:6,2 +chr9 117005080 . A ATTT 0 PASS DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr9 117134295 . TACACACACAC T 0 PASS DP=21;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,1:0,1 +chr9 117187917 . C T 0 PASS DP=62;GPV=1;SPV=1.4083e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,6:8,6 +chr9 117362368 . C CA 0 PASS DP=56;GPV=1;SPV=6.911e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:12,10:2,4 +chr9 118141002 . A ATT 0 PASS DP=43;GPV=1;SPV=0.004773;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,6:4,6 +chr9 120004935 . AT A 0 PASS DP=47;GPV=1;SPV=0.00080119;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4 +chr9 122606773 . ACCTAT A 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2 +chr9 123395472 . G C 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,3:11,1 +chr9 126697837 . C CTGTTT 0 PASS DP=58;GPV=1;SPV=0.020561;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,4:15,5 +chr9 128598272 . C T 0 PASS DP=55;GPV=1;SPV=0.00068482;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5 +chr9 129575015 . G A 0 PASS DP=44;GPV=1;SPV=0.0053975;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,10:6,4 +chr9 129659598 . TTGTGTGTG T 0 PASS DP=38;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:7,2:4,2 +chr9 130121181 . T TCAAAA 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,2:7,3 +chr9 130123533 . T C 0 PASS DP=50;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:7,3:9,6 +chr9 131317261 . CT C 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1 +chr9 132172722 . A AT 0 PASS DP=32;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:12,2:2,4 +chr9 132361988 . A AT 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,1:7,3 +chr9 135730990 . T TAAA 0 PASS DP=43;GPV=1;SPV=0.0065226;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:2,5:7,3 +chr9 136236902 . G C 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:3,2:14,5 +chrX 2857148 . ATCTATCTATCTAGACCTAGATG A 0 PASS DP=57;GPV=1;SPV=0.029045;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,2:10,5 +chrX 3417799 . G A 0 PASS DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:15,6:4,4 +chrX 5706845 . CTA C 0 PASS DP=50;GPV=1;SPV=0.028248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,1:7,3 +chrX 5740439 . C A 0 PASS DP=71;GPV=1;SPV=2.537e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,9:10,5 +chrX 6313965 . G T 0 PASS DP=65;GPV=1;SPV=4.316e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,10:9,2 +chrX 6352929 . CACACACACACATATATATAT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chrX 7716394 . A T 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,4:7,4 +chrX 8960822 . A T 0 PASS DP=61;GPV=1;SPV=2.0941e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:11,7:7,7 +chrX 9405116 . C G 0 PASS DP=103;GPV=1;SPV=0.039026;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:23,6:12,3 +chrX 9413850 . G C 0 PASS DP=64;GPV=1;SPV=0.016724;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chrX 9976423 . A G 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:8,13:0,0 +chrX 10691809 . G A 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,3:13,2 +chrX 11656387 . G A 0 PASS DP=71;GPV=1;SPV=0.00011173;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,6:11,5 +chrX 13128799 . G GTA 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,4:9,1 +chrX 14487387 . TA T 0 PASS DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2 +chrX 14604543 . AGTGTGT A 0 PASS DP=20;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1 +chrX 14933447 . G A 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,5:4,3 +chrX 15397163 . G T 0 PASS DP=70;GPV=1;SPV=7.1811e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:3,9:12,8 +chrX 15675424 . TG T 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,3:18,2 +chrX 15742793 . G A 0 PASS DP=72;GPV=1;SPV=1.5776e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,8:8,6 +chrX 15975953 . TTC T 0 PASS DP=24;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,3:3,5 +chrX 18155664 . A C 0 PASS DP=38;GPV=1;SPV=0.031941;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chrX 18550063 . G A 0 PASS DP=76;GPV=1;SPV=0.0025995;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:14,5:20,5 +chrX 19634031 . G GGTGT 0 PASS DP=36;GPV=1;SPV=0.23867;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,3:12,2:4,1 +chrX 20141814 . T A 0 PASS DP=72;GPV=1;SPV=3.7627e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,9:14,8 +chrX 21235464 . G A 0 PASS DP=48;GPV=1;SPV=0.0030624;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,5:8,5 +chrX 23065635 . A T 0 PASS DP=44;GPV=1;SPV=2.3891e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,6:4,6 +chrX 23350060 . TAAAAAA T 0 PASS DP=34;GPV=1;SPV=0.001482;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,11:5,6:2,5 +chrX 24741874 . A T 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,4:4,7 +chrX 25466850 . G A 0 PASS DP=71;GPV=1;SPV=9.6055e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3 +chrX 25998490 . G GCACACACACACACACACA 0 PASS DP=47;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:6,6:6,1 +chrX 26792298 . CT C 0 PASS DP=25;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:5,7:1,1 +chrX 26870981 . C G 0 PASS DP=45;GPV=1;SPV=0.0022747;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:13,7:2,1 +chrX 29218352 . AT A 0 PASS DP=64;GPV=1;SPV=0.00024436;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,2:11,6 +chrX 31588872 . GT G 0 PASS DP=40;GPV=1;SPV=0.0009828;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,5:5,3 +chrX 31748518 . T A 0 PASS DP=51;GPV=1;SPV=5.2411e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,6:5,7 +chrX 32592107 . C G 0 PASS DP=72;GPV=1;SPV=4.2654e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:11,9:8,9 +chrX 32710937 . A T 0 PASS DP=62;GPV=1;SPV=1.3982e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,23:5,6:7,17 +chrX 33062862 . C A 0 PASS DP=68;GPV=1;SPV=6.5751e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:5,5:13,8 +chrX 33129325 . CTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,4:3,2 +chrX 33908153 . A G 0 PASS DP=52;GPV=1;SPV=3.1587e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:9,9:5,4 +chrX 35405459 . C T 0 PASS DP=54;GPV=1;SPV=0.0049024;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,2:8,3 +chrX 35678154 . AT A 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,4:12,5 +chrX 39563033 . C G 0 PASS DP=49;GPV=1;SPV=0.0060979;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,1:5,4 +chrX 39733942 . AGGAT A 0 PASS DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chrX 41648794 . CT C 0 PASS DP=60;GPV=1;SPV=1.1718e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,5:11,12 +chrX 42022824 . CT C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chrX 43589283 . TA T 0 PASS DP=35;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chrX 44852267 . A AT 0 PASS DP=43;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chrX 45220178 . T TA 0 PASS DP=41;GPV=1;SPV=0.16358;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1 +chrX 47856048 . CAAAAA C 0 PASS DP=21;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,6:1,2 +chrX 48091469 . A G 0 PASS DP=42;GPV=1;SPV=0.045818;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,3:8,5 +chrX 48096043 . G GAAA 0 PASS DP=69;GPV=1;SPV=0.026017;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,8:12,1 +chrX 49341543 . C T 0 PASS DP=331;GPV=1;SPV=0.018877;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:149,20:98,12:51,8 +chrX 50149916 . G A 0 PASS DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,1:11,5 +chrX 51225373 . G T 0 PASS DP=69;GPV=1;SPV=0.0018697;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,8:10,2 +chrX 53010524 . A C 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,2:3,4 +chrX 53181137 . T A 0 PASS DP=61;GPV=1;SPV=0.0046664;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,4:13,3 +chrX 53507860 . C T 0 PASS DP=30;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:0,1:3,1 +chrX 53721402 . G A 0 PASS DP=66;GPV=1;SPV=0.0014171;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,8:9,1 +chrX 55101106 . G A 0 PASS DP=53;GPV=1;SPV=5.9904e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:8,6:5,9 +chrX 55597620 . CA C 0 PASS DP=40;GPV=1;SPV=0.015939;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,6:9,1 +chrX 55614666 . A ATATATATATATCCTT 0 PASS DP=36;GPV=1;SPV=0.030651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:5,3:6,2 +chrX 57038082 . GA G 0 PASS DP=46;GPV=1;SPV=0.022121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:5,5:16,2 +chrX 57306724 . GTGTGTGTA G 0 PASS DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,4:10,5 +chrX 63643360 . C CT 0 PASS DP=46;GPV=1;SPV=0.0037582;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,5:7,2 +chrX 65566646 . G GT 0 PASS DP=46;GPV=1;SPV=0.010777;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,3:5,3 +chrX 67184170 . G A 0 PASS DP=48;GPV=1;SPV=0.13094;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,7:7,6:7,1 +chrX 67415469 . T C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,1:3,3 +chrX 67422657 . GT G 0 PASS DP=35;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,2:9,4 +chrX 68650782 . C CAAACAAAACA 0 PASS DP=41;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:9,4:6,2 +chrX 69898419 . C CA 0 PASS DP=59;GPV=1;SPV=0.0026031;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,4:8,3 +chrX 70338953 . C T 0 PASS DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chrX 70577735 . CT C 0 PASS DP=31;GPV=1;SPV=1.6121e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:2,8:2,3 +chrX 70632121 . G GAA 0 PASS DP=35;GPV=1;SPV=0.19805;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:12,5:4,1 +chrX 71364171 . G GA 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1 +chrX 72057396 . A G 0 PASS DP=82;GPV=1;SPV=0.0093175;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:18,3:15,3 +chrX 74070376 . TAAATA T 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,4:5,3 +chrX 74388455 . C G 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:4,4:12,7 +chrX 75728930 . C T 0 PASS DP=53;GPV=1;SPV=0.0066036;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3 +chrX 76106112 . G A 0 PASS DP=61;GPV=1;SPV=3.2339e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,6:4,5 +chrX 77073595 . T A 0 PASS DP=80;GPV=1;SPV=8.7225e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,25:14,14:6,11 +chrX 78965898 . CT C 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:6,1:15,3 +chrX 82488047 . GA G 0 PASS DP=42;GPV=1;SPV=0.0006592;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,4:3,5 +chrX 84591550 . G T 0 PASS DP=66;GPV=1;SPV=5.8565e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,9:11,4 +chrX 85642275 . C A 0 PASS DP=60;GPV=1;SPV=0.00010095;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6 +chrX 86113285 . GATTT G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2 +chrX 86140667 . C CA 0 PASS DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,8:3,3 +chrX 87211070 . TTCCTTCCTTCC T 0 PASS DP=35;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:3,1:5,5 +chrX 87234171 . T A 0 PASS DP=34;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:6,5:8,1 +chrX 87912589 . A C 0 PASS DP=63;GPV=1;SPV=0.00080253;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,5:9,3 +chrX 89202018 . T C 0 PASS DP=27;GPV=1;SPV=0.00087495;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:2,7:2,2 +chrX 89202024 . C T 0 PASS DP=26;GPV=1;SPV=0.0035042;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,9:1,7:2,2 +chrX 89597156 . CTTTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,2:3,2 +chrX 89900161 . T C 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chrX 89900371 . G A 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chrX 89905042 . T C 0 PASS DP=25;GPV=1;SPV=0.0055336;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4 +chrX 90159408 . T C 0 PASS DP=44;GPV=1;SPV=0.0076872;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,1:6,5 +chrX 90179343 . G A 0 PASS DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,3:6,3 +chrX 90315318 . T G 0 PASS DP=71;GPV=1;SPV=2.7786e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,9:10,8 +chrX 90824432 . G A 0 PASS DP=51;GPV=1;SPV=0.0056817;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,4:10,3 +chrX 91215008 . CT C 0 PASS DP=37;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:13,3:4,1 +chrX 91710886 . C A 0 PASS DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,3:8,7 +chrX 92578105 . A G 0 PASS DP=49;GPV=1;SPV=0.016596;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,6:10,4 +chrX 93344490 . T G 0 PASS DP=53;GPV=1;SPV=0.010126;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,5:9,2 +chrX 96082566 . T G 0 PASS DP=16;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chrX 96105973 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chrX 97129145 . T C 0 PASS DP=50;GPV=1;SPV=0.049139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3 +chrX 97129146 . C T 0 PASS DP=38;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:2,4:9,1 +chrX 101318824 . T G 0 PASS DP=34;GPV=1;SPV=0.064935;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1 +chrX 103136865 . AT A 0 PASS DP=56;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3 +chrX 104310937 . A T 0 PASS DP=65;GPV=1;SPV=0.00021607;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,6:8,3 +chrX 104465952 . A G 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,6:6,6 +chrX 106356782 . C A 0 PASS DP=77;GPV=1;SPV=1.9388e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:8,8:16,5 +chrX 107235832 . A G 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,6:9,5 +chrX 108656846 . T C 0 PASS DP=58;GPV=1;SPV=3.7952e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,10:7,3 +chrX 109064210 . C A 0 PASS DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:2,1:5,4 +chrX 109201859 . G A 0 PASS DP=63;GPV=1;SPV=0.00034703;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,1:10,9 +chrX 109245103 . C T 0 PASS DP=52;GPV=1;SPV=1.4033e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:6,8:8,8 +chrX 112713503 . C CAT 0 PASS DP=35;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chrX 112740421 . A AAAG 0 PASS DP=29;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:11,4:0,0 +chrX 112954507 . TC T 0 PASS DP=25;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,2:5,4 +chrX 113025085 . A G 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chrX 113339159 . T G 0 PASS DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,3:3,5 +chrX 114387168 . A T 0 PASS DP=34;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:7,2:6,2 +chrX 114387169 . T G 0 PASS DP=33;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:6,2:4,2 +chrX 114387198 . G T 0 PASS DP=30;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,1:8,3 +chrX 115895510 . A AT 0 PASS DP=30;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,8:4,4 +chrX 116771502 . G T 0 PASS DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,7:13,3 +chrX 117424521 . A ATG 0 PASS DP=50;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chrX 117582261 . G T 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,5:14,5 +chrX 118072252 . G C 0 PASS DP=60;GPV=1;SPV=0.041988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3 +chrX 119058281 . CTT C 0 PASS DP=21;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,3:3,1 +chrX 119615883 . G A 0 PASS DP=62;GPV=1;SPV=0.00015402;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,8:7,1 +chrX 121762835 . C T 0 PASS DP=71;GPV=1;SPV=2.2826e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,7:8,9 +chrX 122588930 . AT A 0 PASS DP=32;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:1,3:6,8 +chrX 122846270 . A T 0 PASS DP=25;GPV=1;SPV=0.040724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:1,4:4,1 +chrX 122937514 . A AT 0 PASS DP=59;GPV=1;SPV=0.10077;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:14,1:11,2 +chrX 122945040 . C T 0 PASS DP=51;GPV=1;SPV=2.4323e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:5,6:9,9 +chrX 123874694 . AT A 0 PASS DP=35;GPV=1;SPV=0.0032406;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,9:4,2 +chrX 123937999 . G A 0 PASS DP=39;GPV=1;SPV=0.022502;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,3:9,4 +chrX 123938000 . A G 0 PASS DP=60;GPV=1;SPV=0.019711;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,3:19,4 +chrX 124025140 . G A 0 PASS DP=60;GPV=1;SPV=0.00061059;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,6:8,2 +chrX 124088615 . C CT 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chrX 124550761 . AT A 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,5:8,3 +chrX 124592434 . GT G 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2 +chrX 126737139 . C T 0 PASS DP=70;GPV=1;SPV=5.1896e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:5,6:8,9 +chrX 127815860 . C T 0 PASS DP=52;GPV=1;SPV=0.0040433;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,7:14,5 +chrX 129924283 . C CT 0 PASS DP=30;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,5:7,1 +chrX 131499198 . T C 0 PASS DP=51;GPV=1;SPV=0.0003269;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:13,4:4,8 +chrX 132811663 . A AACTT 0 PASS DP=25;GPV=1;SPV=0.027668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,2:4,2 +chrX 132923062 . C CA 0 PASS DP=40;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:10,4:8,2 +chrX 134161309 . C G 0 PASS DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chrX 134452113 . GGA G 0 PASS DP=27;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:4,7:4,1 +chrX 134503061 . C CT 0 PASS DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,6:6,1 +chrX 135760399 . G A 0 PASS DP=164;GPV=1;SPV=0.036255;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:75,11:56,5:19,6 +chrX 135975981 . C CA 0 PASS DP=21;GPV=1;SPV=0.11029;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:3,1:1,1 +chrX 138530197 . A T 0 PASS DP=74;GPV=1;SPV=3.218e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:12,8:8,11 +chrX 139667050 . G C 0 PASS DP=59;GPV=1;SPV=0.00010405;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4 +chrX 141171923 . T TA 0 PASS DP=45;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2 +chrX 141576665 . T C 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,1:4,4 +chrX 142607510 . TA T 0 PASS DP=48;GPV=1;SPV=0.014575;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:8,4:7,3 +chrX 143003764 . C T 0 PASS DP=47;GPV=1;SPV=1.2376e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,7:6,5 +chrX 143901303 . C T 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,9:12,2 +chrX 144115647 . C T 0 PASS DP=61;GPV=1;SPV=9.3552e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,7:7,3 +chrX 144115648 . C T 0 PASS DP=61;GPV=1;SPV=1.7463e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:10,8:6,4 +chrX 144922972 . ATATATATT A 0 PASS DP=22;GPV=1;SPV=0.001935;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,4:1,3 +chrX 145116759 . A AAAAC 0 PASS DP=46;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,4:6,6 +chrX 145944797 . C T 0 PASS DP=57;GPV=1;SPV=0.0013091;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:5,4:12,3 +chrX 146120230 . G A 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:6,4:13,9 +chrX 146175122 . G C 0 PASS DP=69;GPV=1;SPV=2.481e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,5:10,5 +chrX 146340931 . TCCTTTCC T 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,1:7,8 +chrX 146431808 . G A 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4 +chrX 147282283 . T C 0 PASS DP=48;GPV=1;SPV=0.023962;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,6:5,1 +chrX 147282284 . G A 0 PASS DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1 +chrX 148625000 . C CT 0 PASS DP=61;GPV=1;SPV=0.023954;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,3:10,2 +chrX 151449467 . G A 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chrX 151750280 . GA G 0 PASS DP=40;GPV=1;SPV=0.0010749;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,6:5,3 +chrX 152241307 . CTCAGGGG C 0 PASS DP=53;GPV=1;SPV=0.0088512;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2 +chrX 152265933 . C T 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,7:6,4 +chrX 152698051 . A T 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chrX 153030841 . C T 0 PASS DP=73;GPV=1;SPV=0.0045929;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,2:17,7 +chrX 153664066 . A AAAAAAAAAAC 0 PASS DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:4,3:2,1 +chrX 153860467 . T TTTTCTTTCTTTC 0 PASS DP=39;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:5,2:13,2 +chrX 153870995 . G A 0 PASS DP=56;GPV=1;SPV=0.0008665;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:8,5:13,6 +chrX 155018031 . AT A 0 PASS DP=52;GPV=1;SPV=0.017896;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,3:5,1 +chrX 155077239 . C T 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:14,9:8,8 +chrY 3749578 . G A 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1 +chrY 11109189 . C T 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chrY 11136382 . T C 0 PASS DP=114;GPV=1;SPV=0.0018526;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:5,2:31,8 +chrY 11186458 . A G 0 PASS DP=112;GPV=1;SPV=0.016106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:26,6:15,6 +chrY 11198115 . A T 0 PASS DP=162;GPV=1;SPV=0.010994;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:26,13:14,6:12,7 +chrY 11198341 . G A 0 PASS DP=341;GPV=1;SPV=0.0070645;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:158,22:78,7:80,15 +chrY 11200655 . G T 0 PASS DP=189;GPV=1;SPV=0.032837;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:44,7:33,7 +chrY 11226998 . C T 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chrY 11234720 . G A 0 PASS DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chrY 11240233 . T G 0 PASS DP=295;GPV=1;SPV=0.006285;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:119,29:57,9:62,20 +chrY 11240847 . G A 0 PASS DP=255;GPV=1;SPV=0.027677;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:103,18:63,5:40,13 +chrY 11251840 . A T 0 PASS DP=106;GPV=1;SPV=0.032756;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:20,8:14,2 +chrY 11261967 . C T 0 PASS DP=298;GPV=1;SPV=0.042588;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:126,19:69,11:57,8 +chrY 56837265 . G A 0 PASS DP=337;GPV=1;SPV=0.0027187;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:135,16:72,8:63,8 +chrY 56866220 . T C 0 PASS DP=255;GPV=1;SPV=0.029132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:88,22:35,4:53,18
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/FGHI_levels.tab Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,4 @@ +F.vcf lung +G.vcf lung +H.vcf ovary +I.vcf ovary
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/G.vcf Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,5437 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 38775 . C A 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 52058 . G C 0 PASS DP=89;GPV=1;SPV=0.041853;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:18,4:22,3 +chr1 93819 . C T 0 PASS DP=57;GPV=1;SPV=0.076076;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:23,1:9,5 +chr1 136733 . G T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2 +chr1 136764 . A C 0 PASS DP=30;GPV=1;SPV=0.32759;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:9,2:9,1 +chr1 181917 . G T 0 PASS DP=123;GPV=1;SPV=0.0094908;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:55,20:34,8:21,12 +chr1 188252 . G T 0 PASS DP=72;GPV=1;SPV=0.067805;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:22,2:21,5 +chr1 610844 . G A 0 PASS DP=132;GPV=1;SPV=9.8076e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:40,21:18,11:22,10 +chr1 692574 . T C 0 PASS DP=158;GPV=1;SPV=0.024095;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:84,10:49,1:35,9 +chr1 872970 . C T 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3 +chr1 2675066 . G A 0 PASS DP=183;GPV=1;SPV=0.014863;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,14:63,12:16,2 +chr1 3287407 . G A 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,2:13,2 +chr1 3908420 . GTCTCTCTCTC G 0 PASS DP=29;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:6,4:3,1 +chr1 4751034 . G A 0 PASS DP=77;GPV=1;SPV=1.0893e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:25,27:14,18:11,9 +chr1 6421408 . C T 0 PASS DP=74;GPV=1;SPV=0.00012338;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:14,6:12,6 +chr1 6929498 . G A 0 PASS DP=85;GPV=1;SPV=3.5271e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:15,8:11,7 +chr1 6963302 . C T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:2,3:11,1 +chr1 8366915 . AC A 0 PASS DP=50;GPV=1;SPV=0.015626;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,2:7,5 +chr1 8490999 . C T 0 PASS DP=92;GPV=1;SPV=1.6895e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,22:14,12:15,10 +chr1 9131231 . T A 0 PASS DP=58;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,2:7,1:0,1 +chr1 9845814 . CAA C 0 PASS DP=36;GPV=1;SPV=0.00090577;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:6,10:2,2 +chr1 10332501 . ATT A 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,1:5,5 +chr1 11041404 . G GTGGATGGA 0 PASS DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,4:2,1 +chr1 11771031 . ATG A 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:3,3:5,2 +chr1 12285929 . CTTCCT C 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,3:8,2 +chr1 12809352 . C CAAAA 0 PASS DP=59;GPV=1;SPV=0.041843;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,11:12,9:11,2 +chr1 12867528 . TTTCTTTC T 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,1:6,6 +chr1 12877779 . A G 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr1 13048038 . A C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2 +chr1 13308308 . C G 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:5,2:29,2 +chr1 13320513 . T A 0 PASS DP=88;GPV=1;SPV=2.9276e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:22,12:6,10 +chr1 13391530 . C T 0 PASS DP=82;GPV=1;SPV=2.9796e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,3:11,8 +chr1 14497335 . TAAA T 0 PASS DP=41;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:5,7:3,1 +chr1 15448170 . C CT 0 PASS DP=35;GPV=1;SPV=0.059571;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,6:10,3 +chr1 16513214 . C G 0 PASS DP=162;GPV=1;SPV=0.022218;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:49,6:24,6 +chr1 16533137 . A G 0 PASS DP=125;GPV=1;SPV=0.012934;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:30,4:30,6 +chr1 16534573 . C T 0 PASS DP=150;GPV=1;SPV=0.021029;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:21,3:35,13 +chr1 16572153 . G A 0 PASS DP=181;GPV=1;SPV=0.018439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:88,17:53,8:35,9 +chr1 16591685 . C T 0 PASS DP=148;GPV=1;SPV=0.018042;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:72,19:26,6:46,13 +chr1 16674332 . G A 0 PASS DP=86;GPV=1;SPV=0.043448;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:26,3:13,7 +chr1 16687956 . C CA 0 PASS DP=70;GPV=1;SPV=0.012849;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,5:12,9 +chr1 16728743 . C T 0 PASS DP=164;GPV=1;SPV=0.028883;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:82,14:41,6:41,8 +chr1 16747651 . G C 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr1 16896032 . C T 0 PASS DP=122;GPV=1;SPV=0.0005299;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:39,9:14,2 +chr1 16969810 . C A 0 PASS DP=96;GPV=1;SPV=7.827e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:29,31:17,12:12,19 +chr1 17352065 . GGTGGGAA G 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3 +chr1 18700080 . G T 0 PASS DP=65;GPV=1;SPV=0.054436;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:19,3:16,3 +chr1 18795159 . CATAAAATAAAATAAA C 0 PASS DP=52;GPV=1;SPV=0.032529;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,8:15,3:5,5 +chr1 18940562 . C CGGAT 0 PASS DP=76;GPV=1;SPV=0.0036346;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:14,7:13,10 +chr1 19874142 . C CCACCACCACCATCACCACCACCACCAT 0 PASS DP=55;GPV=1;SPV=0.16794;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,4:12,3:14,1 +chr1 19965980 . CTTTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,2:3,3 +chr1 20475026 . G A 0 PASS DP=100;GPV=1;SPV=1.4245e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:12,9:18,10 +chr1 20559688 . GGTGTGT G 0 PASS DP=29;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:7,3:1,2 +chr1 20580501 . C CAAA 0 PASS DP=33;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:6,5:4,1 +chr1 20655174 . T G 0 PASS DP=54;GPV=1;SPV=0.075416;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:13,4:17,2 +chr1 21435430 . G C 0 PASS DP=80;GPV=1;SPV=4.1499e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:15,10:11,7 +chr1 21576218 . T TGATG 0 PASS DP=52;GPV=1;SPV=0.010902;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,8:10,5:12,3 +chr1 21576287 . G A 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:18,4:7,1 +chr1 22898118 . C CA 0 PASS DP=45;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,13:10,10:7,3 +chr1 23837636 . A G 0 PASS DP=31;GPV=1;SPV=0.1371;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,3:5,3 +chr1 26109124 . G GT 0 PASS DP=43;GPV=1;SPV=0.0058313;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,7:10,2 +chr1 27204812 . G GTTT 0 PASS DP=30;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:8,2:5,2 +chr1 27680860 . T C 0 PASS DP=31;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:3,1:4,1 +chr1 27899512 . AG A 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chr1 28847055 . G GTCCCCTTTCCTT 0 PASS DP=49;GPV=1;SPV=0.010106;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:5,4:6,4 +chr1 29307749 . CT C 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,2:8,3 +chr1 29503981 . G A 0 PASS DP=86;GPV=1;SPV=3.8811e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:15,11:12,10 +chr1 30465017 . G A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr1 30468602 . C T 0 PASS DP=75;GPV=1;SPV=0.00020157;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:15,9:14,4 +chr1 31038986 . T A 0 PASS DP=50;GPV=1;SPV=0.022357;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:10,3:8,5 +chr1 31254369 . T G 0 PASS DP=58;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:1,1:4,1 +chr1 31842010 . CTT C 0 PASS DP=33;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,3:2,2 +chr1 31986380 . TAATAA T 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,4:17,1 +chr1 32648963 . CT C 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,5:7,2 +chr1 32699153 . C CTT 0 PASS DP=23;GPV=1;SPV=0.0015083;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:1,4:1,2 +chr1 32974597 . T G 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,3:10,5 +chr1 32990704 . CA C 0 PASS DP=38;GPV=1;SPV=0.0052761;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,9:3,1 +chr1 33695543 . C T 0 PASS DP=93;GPV=1;SPV=3.2519e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:14,7:20,7 +chr1 33975486 . T TACACACACACACACAC 0 PASS DP=65;GPV=1;SPV=0.037106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,8:14,4:15,4 +chr1 34254910 . C G 0 PASS DP=49;GPV=1;SPV=0.0021249;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:12,6:4,7 +chr1 34922969 . A T 0 PASS DP=61;GPV=1;SPV=1.8239e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,5:11,8 +chr1 35050454 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:6,7:5,1 +chr1 35800326 . C T 0 PASS DP=63;GPV=1;SPV=0.043948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:16,4:11,1 +chr1 37131785 . CCTTCCTTCCTT C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr1 39579857 . C CT 0 PASS DP=30;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:5,3:6,2 +chr1 39764267 . A AT 0 PASS DP=79;GPV=1;SPV=0.017728;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:37,18:20,12:17,6 +chr1 40291839 . C CTT 0 PASS DP=48;GPV=1;SPV=0.0045803;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3 +chr1 40730964 . C T 0 PASS DP=79;GPV=1;SPV=0.00013412;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,5:14,9 +chr1 40934307 . A ATGTATTTATTTATTTG 0 PASS DP=65;GPV=1;SPV=0.0018492;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,13:13,9:8,4 +chr1 41018828 . GT G 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4 +chr1 42545186 . A AAAAAAAT 0 PASS DP=28;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,2:4,3 +chr1 42887127 . G T 0 PASS DP=83;GPV=1;SPV=2.0668e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:15,11:11,6 +chr1 43281408 . C CA 0 PASS DP=36;GPV=1;SPV=0.016716;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,5:2,1 +chr1 43686151 . G GT 0 PASS DP=35;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,8:2,4:2,4 +chr1 44597468 . GCACACACACA G 0 PASS DP=37;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,12:3,7:2,5 +chr1 45611456 . CTT C 0 PASS DP=31;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:4,5:2,1 +chr1 46171705 . C T 0 PASS DP=85;GPV=1;SPV=3.1812e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:21,25:11,13:10,12 +chr1 46235123 . AT A 0 PASS DP=34;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:8,4:2,7 +chr1 46290916 . G GTTT 0 PASS DP=29;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:3,2:4,2 +chr1 49087734 . A G 0 PASS DP=70;GPV=1;SPV=3.8539e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:10,7:12,12 +chr1 50219767 . A ATG 0 PASS DP=41;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,4:2,1:0,3 +chr1 51929784 . TG T 0 PASS DP=67;GPV=1;SPV=3.3557e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:8,11:15,5 +chr1 53097955 . C A 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1 +chr1 53203775 . CTT C 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,2:14,2 +chr1 53284251 . T C 0 PASS DP=46;GPV=1;SPV=0.12563;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:19,5:9,2 +chr1 53378059 . C CAA 0 PASS DP=42;GPV=1;SPV=0.28876;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:16,3:9,1 +chr1 53462097 . C T 0 PASS DP=86;GPV=1;SPV=1.2621e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:12,10:8,9 +chr1 54561922 . C A 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:3,4:13,5 +chr1 54562373 . A T 0 PASS DP=34;GPV=1;SPV=0.0024657;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,3:5,8 +chr1 54828365 . C T 0 PASS DP=73;GPV=1;SPV=8.5758e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:17,10:7,7 +chr1 55792004 . C A 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,1:19,3 +chr1 55799118 . CT C 0 PASS DP=21;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,1:2,3 +chr1 57606559 . ATATAT A 0 PASS DP=36;GPV=1;SPV=0.029368;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,2:6,5 +chr1 59557756 . T C 0 PASS DP=75;GPV=1;SPV=2.1926e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:15,13:9,7 +chr1 61668090 . G A 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr1 63997844 . A T 0 PASS DP=81;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,4:9,2:13,2 +chr1 65519152 . CT C 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr1 65563555 . G C 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,4:7,1 +chr1 66631681 . TTCTCTCTCTCTCTC T 0 PASS DP=28;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr1 67164653 . A T 0 PASS DP=56;GPV=1;SPV=0.027873;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,4:9,6 +chr1 67786949 . G A 0 PASS DP=60;GPV=1;SPV=0.010783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,4:13,6 +chr1 68444324 . C T 0 PASS DP=91;GPV=1;SPV=1.5227e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:12,8:17,9 +chr1 69526605 . CAAAAAAAAAAA C 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1 +chr1 69916165 . A G 0 PASS DP=43;GPV=1;SPV=0.019285;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2 +chr1 70669231 . GTTT G 0 PASS DP=30;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:6,2:1,2 +chr1 71310903 . C CT 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,7:2,1 +chr1 71329711 . G GTTA 0 PASS DP=56;GPV=1;SPV=0.0071456;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:9,7:17,4 +chr1 71358681 . C T 0 PASS DP=87;GPV=1;SPV=6.3166e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:15,8:18,6 +chr1 72712614 . CAAA C 0 PASS DP=24;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:5,4:0,0 +chr1 72998125 . T TACAC 0 PASS DP=72;GPV=1;SPV=0.0043853;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,12:13,4:14,8 +chr1 73996641 . T C 0 PASS DP=55;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,5:9,1:4,4 +chr1 74471845 . G C 0 PASS DP=78;GPV=1;SPV=1.774e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:30,24:13,10:17,14 +chr1 74978805 . TA T 0 PASS DP=65;GPV=1;SPV=2.6729e-07;SS=2;SSC=65;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:4,22:1,11:3,11 +chr1 75378068 . TG T 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr1 75710562 . TAAA T 0 PASS DP=30;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,6:6,1 +chr1 76872068 . A AAC 0 PASS DP=49;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,12:8,7:4,5 +chr1 80462558 . C A 0 PASS DP=76;GPV=1;SPV=5.8035e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,5:12,11 +chr1 80943296 . G T 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,1:4,3 +chr1 82381401 . C T 0 PASS DP=54;GPV=1;SPV=0.0082862;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5 +chr1 83103986 . ATGTACG A 0 PASS DP=64;GPV=1;SPV=0.082408;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2 +chr1 83446760 . G A 0 PASS DP=80;GPV=1;SPV=0.0092573;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,4:16,6 +chr1 84601128 . A G 0 PASS DP=89;GPV=1;SPV=3.0081e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:29,23:15,13:14,10 +chr1 86828934 . CAA C 0 PASS DP=34;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,7:6,2 +chr1 88874069 . G A 0 PASS DP=74;GPV=1;SPV=0.00096111;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:15,5:17,7 +chr1 90643879 . T TTTCTTTC 0 PASS DP=40;GPV=1;SPV=0.33319;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:6,1:20,3 +chr1 91951039 . G A 0 PASS DP=59;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,4:10,1:10,3 +chr1 91952819 . G A 0 PASS DP=59;GPV=1;SPV=2.7175e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,4:8,8 +chr1 91958124 . C T 0 PASS DP=80;GPV=1;SPV=8.5186e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:23,25:10,10:13,15 +chr1 92467452 . C G 0 PASS DP=68;GPV=1;SPV=3.8603e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:10,11:15,9 +chr1 93396901 . T TA 0 PASS DP=42;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:12,3:9,3 +chr1 93777402 . T TTCCTCTTCC 0 PASS DP=38;GPV=1;SPV=0.29549;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:8,2:12,2 +chr1 96364934 . C T 0 PASS DP=75;GPV=1;SPV=3.5118e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:8,13:12,5 +chr1 97525758 . T TAGAGAGAG 0 PASS DP=54;GPV=1;SPV=0.0054686;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:14,5:7,9 +chr1 97656966 . A AT 0 PASS DP=48;GPV=1;SPV=0.036548;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:6,6:8,1 +chr1 100915256 . C T 0 PASS DP=47;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3 +chr1 101846998 . T C 0 PASS DP=71;GPV=1;SPV=3.5507e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,8:11,7 +chr1 102648603 . A ACC 0 PASS DP=43;GPV=1;SPV=0.018839;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,2:6,6 +chr1 103199869 . A AT 0 PASS DP=36;GPV=1;SPV=0.011401;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,6:2,1 +chr1 104438856 . A T 0 PASS DP=73;GPV=1;SPV=1.1102e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,10:7,9 +chr1 104883578 . T C 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,1:14,3 +chr1 104964690 . T C 0 PASS DP=46;GPV=1;SPV=0.0034427;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:4,6:11,6 +chr1 105395278 . CT C 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,4:1,1 +chr1 105522363 . G T 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:21,3:7,1 +chr1 105939139 . C A 0 PASS DP=88;GPV=1;SPV=6.7637e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:29,21:6,7:23,14 +chr1 106912405 . C T 0 PASS DP=72;GPV=1;SPV=8.0704e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:8,12:10,9 +chr1 107049530 . GT G 0 PASS DP=32;GPV=1;SPV=0.0054674;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,7:4,3 +chr1 107112163 . TA T 0 PASS DP=61;GPV=1;SPV=0.01652;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3 +chr1 107209895 . T A 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,2:20,2 +chr1 107968049 . T A 0 PASS DP=67;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,4:13,1:13,3 +chr1 108229759 . C T 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr1 108458398 . C T 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr1 110213170 . T TAAAAA 0 PASS DP=37;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,4:8,3:2,1 +chr1 110374011 . A ATATATATATATATATATATCCTTAGTT 0 PASS DP=50;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,3:8,5 +chr1 111594590 . G A 0 PASS DP=47;GPV=1;SPV=0.055299;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:17,5:7,1 +chr1 113129309 . C CAAAAA 0 PASS DP=43;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,9:2,8:6,1 +chr1 114689570 . G A 0 PASS DP=89;GPV=1;SPV=3.2913e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:27,29:11,18:16,11 +chr1 115355591 . C T 0 PASS DP=67;GPV=1;SPV=0.030002;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,3:13,4 +chr1 115414865 . C T 0 PASS DP=95;GPV=1;SPV=1.1015e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:29,21:19,14:10,7 +chr1 116263076 . C T 0 PASS DP=96;GPV=1;SPV=1.3876e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:29,27:15,18:14,9 +chr1 116934531 . G A 0 PASS DP=69;GPV=1;SPV=5.8872e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:2,4:15,8 +chr1 117196403 . T G 0 PASS DP=55;GPV=1;SPV=2.6346e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:11,23:5,13:6,10 +chr1 117504330 . T A 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,1:18,3 +chr1 118089354 . T A 0 PASS DP=41;GPV=1;SPV=0.37127;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:13,2:13,2 +chr1 118324442 . T TTC 0 PASS DP=31;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:2,2:7,3 +chr1 119843465 . C CTTTTTTTT 0 PASS DP=24;GPV=1;SPV=0.12308;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:1,5:4,2 +chr1 120379034 . C CTT 0 PASS DP=68;GPV=1;SPV=0.0071208;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:11,9:16,7 +chr1 120418603 . T A 0 PASS DP=57;GPV=1;SPV=0.0037422;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:11,11:8,4 +chr1 120508455 . CA C 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,5:2,1 +chr1 120560460 . C CAT 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chr1 120563830 . A C 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,3:12,1 +chr1 120704427 . G A 0 PASS DP=61;GPV=1;SPV=0.052515;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,3:9,1 +chr1 121126844 . CA C 0 PASS DP=29;GPV=1;SPV=0.016771;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,8:2,1 +chr1 121202431 . C CT 0 PASS DP=55;GPV=1;SPV=0.025405;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,6:10,4 +chr1 121238011 . A C 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,1:8,3 +chr1 121341391 . A C 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1 +chr1 121640231 . C A 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,3:2,2 +chr1 121731784 . C T 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1 +chr1 121764804 . T A 0 PASS DP=171;GPV=1;SPV=0.0015366;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:90,12:29,10:61,2 +chr1 121777230 . A T 0 PASS DP=71;GPV=1;SPV=0.094058;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:14,3:22,1 +chr1 121793875 . AG A 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,3:17,1 +chr1 121793879 . G T 0 PASS DP=44;GPV=1;SPV=0.25496;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,3:18,1 +chr1 121803036 . G C 0 PASS DP=62;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:13,3:15,5 +chr1 121814437 . T G 0 PASS DP=58;GPV=1;SPV=0.21541;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:0,1:36,3 +chr1 121841017 . G A 0 PASS DP=57;GPV=1;SPV=0.023578;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:15,5:9,4 +chr1 121925466 . G C 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,3:16,2 +chr1 122043610 . T C 0 PASS DP=38;GPV=1;SPV=0.13105;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,4:12,1 +chr1 122091755 . G C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,1:6,1 +chr1 122181447 . C T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 122282736 . C A 0 PASS DP=63;GPV=1;SPV=0.0050701;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,14:2,1:20,13 +chr1 122293456 . C T 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,2:5,2 +chr1 122345629 . G T 0 PASS DP=154;GPV=1;SPV=0.022505;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:60,13:9,4:51,9 +chr1 122390092 . G T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr1 124797823 . A T 0 PASS DP=131;GPV=1;SPV=0.040389;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:66,11:38,8:28,3 +chr1 124829379 . T G 0 PASS DP=50;GPV=1;SPV=0.049793;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,6:8,2 +chr1 124843346 . GC G 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:5,1:16,4 +chr1 124856963 . CT C 0 PASS DP=66;GPV=1;SPV=0.083854;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:30,2:6,3 +chr1 124858310 . T A 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:3,3:18,3 +chr1 124869470 . C T 0 PASS DP=239;GPV=1;SPV=0.0050296;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:110,20:90,16:20,4 +chr1 124877015 . C T 0 PASS DP=72;GPV=1;SPV=0.038459;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:18,5:10,6 +chr1 124893993 . C A 0 PASS DP=82;GPV=1;SPV=0.050238;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:18,3:23,2 +chr1 124901802 . AG A 0 PASS DP=124;GPV=1;SPV=0.012137;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:59,10:36,6:23,4 +chr1 124901833 . A T 0 PASS DP=86;GPV=1;SPV=0.0071318;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:25,4:12,3 +chr1 124926649 . G T 0 PASS DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:15,3:0,3 +chr1 124929931 . G C 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,2:9,5 +chr1 124929932 . G T 0 PASS DP=35;GPV=1;SPV=0.029984;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,2:5,4 +chr1 125124300 . G A 0 PASS DP=360;GPV=1;SPV=0.041751;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:181,31:100,12:81,19 +chr1 125147758 . A T 0 PASS DP=57;GPV=1;SPV=0.15614;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,4:15,1:13,3 +chr1 125183179 . G C 0 PASS DP=1545;GPV=1;SPV=8.5196e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:919:812,102:91,3:721,99 +chr1 143185074 . G C 0 PASS DP=2826;GPV=1;SPV=0.0075839;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1512:1314,173:705,113:609,60 +chr1 143212534 . G A 0 PASS DP=14005;GPV=1;SPV=0.00031864;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7467:6550,830:2892,534:3658,296 +chr1 143216012 . A C 0 PASS DP=928;GPV=1;SPV=0.0030993;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:533:464,64:130,19:334,45 +chr1 143230867 . G C 0 PASS DP=288;GPV=1;SPV=0.035681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:130,27:79,16:51,11 +chr1 143239214 . T G 0 PASS DP=497;GPV=1;SPV=0.00014353;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:277:220,57:159,37:61,20 +chr1 143255660 . C G 0 PASS DP=7301;GPV=1;SPV=0.0048443;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:4112:3187,422:1670,104:1517,318 +chr1 143443500 . C T 0 PASS DP=141;GPV=1;SPV=0.046114;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:62,8:25,7:37,1 +chr1 143758803 . G A 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,4:9,1 +chr1 144103864 . T G 0 PASS DP=61;GPV=1;SPV=0.07667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:8,1:26,5 +chr1 144480297 . C T 0 PASS DP=53;GPV=1;SPV=0.043024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:6,7:14,2 +chr1 145411387 . C CT 0 PASS DP=34;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:2,5:9,5 +chr1 145780618 . T TA 0 PASS DP=36;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:11,6:4,3 +chr1 146333876 . A T 0 PASS DP=51;GPV=1;SPV=0.0062802;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:8,8:14,2 +chr1 146333962 . A C 0 PASS DP=41;GPV=1;SPV=0.15847;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,1:14,4 +chr1 146337736 . T C 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr1 146366233 . T C 0 PASS DP=78;GPV=1;SPV=0.037277;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:12,5:21,8 +chr1 148815547 . C CA 0 PASS DP=37;GPV=1;SPV=0.18479;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:8,4:9,1 +chr1 149046625 . G C 0 PASS DP=38;GPV=1;SPV=0.022117;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4 +chr1 149046626 . A C 0 PASS DP=36;GPV=1;SPV=0.025362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:9,3:6,4 +chr1 149054280 . C G 0 PASS DP=48;GPV=1;SPV=0.020191;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,2:9,8 +chr1 149144781 . G C 0 PASS DP=72;GPV=1;SPV=0.014227;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:19,1:11,8 +chr1 149176408 . G A 0 PASS DP=93;GPV=1;SPV=0.04667;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,4:18,5 +chr1 149241005 . G A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr1 149393069 . C CAA 0 PASS DP=34;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:8,4:5,2 +chr1 150229296 . T TTA 0 PASS DP=52;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,1:15,4 +chr1 150423793 . T A 0 PASS DP=62;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:3,2:1,1:2,1 +chr1 150501293 . CAA C 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,7:4,1 +chr1 151497704 . C CA 0 PASS DP=31;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:3,5:5,1 +chr1 151600822 . C T 0 PASS DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,6:7,2 +chr1 151637339 . C T 0 PASS DP=78;GPV=1;SPV=1.1014e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,22:17,11:12,11 +chr1 151932761 . TATATATATATATATATATATATATATACAC T 0 PASS DP=40;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:10,8:3,3 +chr1 152228065 . AAT A 0 PASS DP=27;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,2:2,2 +chr1 152645481 . C A 0 PASS DP=74;GPV=1;SPV=1.1644e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:20,23:9,9:11,14 +chr1 153859914 . T C 0 PASS DP=41;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:8,6:7,1 +chr1 154676330 . T C 0 PASS DP=68;GPV=1;SPV=0.00012241;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:14,4:11,10 +chr1 155876235 . C CTT 0 PASS DP=29;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:4,3:7,2 +chr1 157178895 . CTTTTTTTTT C 0 PASS DP=33;GPV=1;SPV=0.17001;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:10,3:7,3 +chr1 158123253 . A G 0 PASS DP=89;GPV=1;SPV=3.1971e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:36,18:16,6:20,12 +chr1 159021939 . CTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,2:4,6 +chr1 159755212 . TA T 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chr1 160732207 . C A 0 PASS DP=82;GPV=1;SPV=2.2259e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:29,25:15,11:14,14 +chr1 160984686 . A ATG 0 PASS DP=48;GPV=1;SPV=0.18941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:18,1:7,2 +chr1 161055905 . T A 0 PASS DP=40;GPV=1;SPV=0.0050131;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:8,4:6,5 +chr1 161661251 . A G 0 PASS DP=72;GPV=1;SPV=0.01652;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,5:17,4:6,1 +chr1 161728460 . C CA 0 PASS DP=53;GPV=1;SPV=0.014395;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:13,7:7,3 +chr1 162416406 . A AAGAG 0 PASS DP=57;GPV=1;SPV=0.047734;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:22,6:9,1 +chr1 163656351 . C CT 0 PASS DP=45;GPV=1;SPV=0.013096;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,7:9,4 +chr1 164229777 . C T 0 PASS DP=72;GPV=1;SPV=7.7636e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:9,10:12,4 +chr1 164435466 . C T 0 PASS DP=88;GPV=1;SPV=1.0563e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:31,24:13,10:18,14 +chr1 166285268 . A T 0 PASS DP=60;GPV=1;SPV=6.9014e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:5,9:7,10 +chr1 170585727 . T TAA 0 PASS DP=29;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,5:5,3 +chr1 171225139 . TTATATATA T 0 PASS DP=30;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,9:5,3:2,6 +chr1 171835883 . CAA C 0 PASS DP=36;GPV=1;SPV=0.054634;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:9,7:5,1 +chr1 172304206 . C CA 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,7:4,2 +chr1 172747690 . G A 0 PASS DP=39;GPV=1;SPV=0.012087;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,5:8,3 +chr1 172835631 . G A 0 PASS DP=70;GPV=1;SPV=1.2979e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,5:10,10 +chr1 172901636 . T A 0 PASS DP=77;GPV=1;SPV=6.6277e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,23:15,6:9,17 +chr1 173630818 . TA T 0 PASS DP=32;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:9,6:0,1 +chr1 175207798 . G A 0 PASS DP=77;GPV=1;SPV=2.5139e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:23,26:11,13:12,13 +chr1 176042270 . C CA 0 PASS DP=28;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,5:1,4:1,1 +chr1 176275360 . CAAAA C 0 PASS DP=39;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,9:8,7:3,2 +chr1 176300459 . T A 0 PASS DP=71;GPV=1;SPV=3.0582e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:11,7:8,13 +chr1 176836611 . C T 0 PASS DP=66;GPV=1;SPV=4.9689e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:11,9:6,10 +chr1 177075433 . A T 0 PASS DP=57;GPV=1;SPV=2.7744e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:7,12:11,8 +chr1 177402840 . G A 0 PASS DP=99;GPV=1;SPV=0.0037194;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:24,1:19,7 +chr1 177594049 . TA T 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,2:10,3 +chr1 178030248 . G A 0 PASS DP=76;GPV=1;SPV=2.8231e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:13,7:11,11 +chr1 178164504 . T TGTGC 0 PASS DP=69;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,7:11,4:22,3 +chr1 178590468 . A AT 0 PASS DP=43;GPV=1;SPV=0.022983;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,4:9,7 +chr1 178650426 . CTTTT C 0 PASS DP=37;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,5:1,1 +chr1 178695591 . T C 0 PASS DP=59;GPV=1;SPV=0.034818;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,6:8,2 +chr1 178695713 . T TA 0 PASS DP=55;GPV=1;SPV=0.26692;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,4:7,3:11,1 +chr1 179013365 . C CAA 0 PASS DP=47;GPV=1;SPV=0.010901;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,8:6,4 +chr1 179295966 . ATTTTTT A 0 PASS DP=34;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:7,2:6,2 +chr1 180559644 . A G 0 PASS DP=76;GPV=1;SPV=1.0858e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:9,12:15,10 +chr1 180575130 . TTTCTTTCTTTCTTTC T 0 PASS DP=58;GPV=1;SPV=0.020561;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,3:15,6 +chr1 180588706 . G GTTTTTT 0 PASS DP=44;GPV=1;SPV=0.059274;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:13,2:5,2 +chr1 180711722 . C G 0 PASS DP=73;GPV=1;SPV=1.3202e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:11,9:6,8 +chr1 181537106 . T C 0 PASS DP=42;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:8,2:3,2 +chr1 182109765 . CA C 0 PASS DP=41;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:4,6:3,3 +chr1 183156625 . CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1 +chr1 183624519 . C A 0 PASS DP=70;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,4:2,1:2,3 +chr1 184024655 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.012912;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,8:5,3 +chr1 185494559 . C CTT 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,4:12,2 +chr1 186652267 . T TTTTC 0 PASS DP=40;GPV=1;SPV=0.033264;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:2,3:11,3 +chr1 187257763 . A ATGTG 0 PASS DP=59;GPV=1;SPV=0.047467;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:14,5:10,6 +chr1 187303719 . T C 0 PASS DP=39;GPV=1;SPV=0.0074752;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:4,2:2,7 +chr1 187303763 . CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:3,1:11,4 +chr1 188985760 . A G 0 PASS DP=78;GPV=1;SPV=2.2273e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:20,24:7,6:13,18 +chr1 190260557 . T G 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,5:9,5 +chr1 190706678 . TC T 0 PASS DP=42;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,11:4,5:5,6 +chr1 190959631 . GTA G 0 PASS DP=59;GPV=1;SPV=0.038416;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,5:13,3:8,2 +chr1 191433483 . A C 0 PASS DP=24;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,3:2,1 +chr1 191703593 . A AT 0 PASS DP=38;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:5,3:5,2 +chr1 192223097 . GTGTA G 0 PASS DP=57;GPV=1;SPV=0.048788;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,8:10,5:14,3 +chr1 192320520 . G A 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:19,4:14,2 +chr1 193941137 . GTATATATATATA G 0 PASS DP=55;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:3,1:1,1 +chr1 194212699 . A AATATATAT 0 PASS DP=25;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,4:3,2 +chr1 194623934 . G T 0 PASS DP=73;GPV=1;SPV=5.4453e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,23:14,14:11,9 +chr1 194768659 . C T 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr1 195632162 . CTT C 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr1 195990677 . G A 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:2,2:5,6 +chr1 196638281 . AAAAAG A 0 PASS DP=30;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr1 196714597 . ATG A 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,7:6,2 +chr1 197951046 . CA C 0 PASS DP=39;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:2,6:2,2 +chr1 198660503 . G T 0 PASS DP=70;GPV=1;SPV=0.08973;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,1:20,4 +chr1 198660504 . T G 0 PASS DP=66;GPV=1;SPV=0.1268;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:15,1:21,3 +chr1 198983869 . C CTT 0 PASS DP=43;GPV=1;SPV=0.0018037;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:4,12:3,10:1,2 +chr1 200164867 . GT G 0 PASS DP=27;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2 +chr1 200938862 . TAAAA T 0 PASS DP=26;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1 +chr1 201007285 . CACAG C 0 PASS DP=45;GPV=1;SPV=0.39535;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr1 201178375 . CAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1 +chr1 201266373 . T TTTCC 0 PASS DP=30;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:1,0:13,4 +chr1 202971255 . CT C 0 PASS DP=34;GPV=1;SPV=0.086046;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:12,4:6,4 +chr1 203724118 . C T 0 PASS DP=80;GPV=1;SPV=6.4115e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:11,9:13,5 +chr1 204660581 . T A 0 PASS DP=72;GPV=1;SPV=0.013387;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:8,7:4,4:4,3 +chr1 206171646 . G A 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:3,5:0,2 +chr1 206255661 . C A 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1 +chr1 207057302 . CA C 0 PASS DP=46;GPV=1;SPV=0.017537;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:15,7:5,1 +chr1 209084697 . CTCACATGTTGTGAAGCTACCT C 0 PASS DP=58;GPV=1;SPV=0.036961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:9,6:14,4 +chr1 209215742 . A G 0 PASS DP=95;GPV=1;SPV=9.9977e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:28,27:19,15:9,12 +chr1 209827240 . CT C 0 PASS DP=53;GPV=1;SPV=0.4893;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,4:9,3:9,1 +chr1 212136772 . T TA 0 PASS DP=62;GPV=1;SPV=0.0036299;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,17:12,10:9,7 +chr1 212210698 . T C 0 PASS DP=49;GPV=1;SPV=0.016188;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7 +chr1 212771611 . C CAAA 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr1 212806856 . ATATG A 0 PASS DP=39;GPV=1;SPV=0.0055835;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,7:3,1 +chr1 212886042 . C CTT 0 PASS DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:7,7:7,1 +chr1 213319312 . C CAA 0 PASS DP=45;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,8:1,7:4,1 +chr1 214741429 . C T 0 PASS DP=69;GPV=1;SPV=1.5451e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,24:8,10:5,14 +chr1 214796417 . C CT 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:3,2:14,3 +chr1 215312157 . CATATAT C 0 PASS DP=17;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:1,3:1,2 +chr1 215764977 . T TA 0 PASS DP=78;GPV=1;SPV=3.1405e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,21:13,14:13,7 +chr1 216084534 . A G 0 PASS DP=71;GPV=1;SPV=0.00030969;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:13,9:17,7 +chr1 218720878 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,2:5,1 +chr1 219353072 . C T 0 PASS DP=79;GPV=1;SPV=3.1863e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:11,5:14,12 +chr1 219598196 . A G 0 PASS DP=80;GPV=1;SPV=0.013119;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:19,3:23,6 +chr1 219655529 . ATGATAGAT A 0 PASS DP=65;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:9,4:3,2:6,2 +chr1 219747368 . T G 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr1 220214946 . T TTATATATATA 0 PASS DP=28;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:4,3:1,3 +chr1 220311319 . CTTCTTTCTTTCTTTCT C 0 PASS DP=45;GPV=1;SPV=0.18323;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:23,3:6,2:17,1 +chr1 220965682 . C CAAAAAAAA 0 PASS DP=60;GPV=1;SPV=0.031574;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,7:9,4:20,3 +chr1 221279608 . C T 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:2,2:17,2 +chr1 221916527 . GAC G 0 PASS DP=63;GPV=1;SPV=0.032095;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,6:8,4:8,2 +chr1 221920288 . A G 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,2:2,3 +chr1 222308853 . C CT 0 PASS DP=37;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,8:5,2 +chr1 222480478 . C T 0 PASS DP=44;GPV=1;SPV=0.0066111;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,4:11,5 +chr1 222754232 . CAAAA C 0 PASS DP=37;GPV=1;SPV=0.0021846;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,11:5,8:3,3 +chr1 223692817 . T C 0 PASS DP=73;GPV=1;SPV=1.6283e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:8,5:13,12 +chr1 223855748 . T TA 0 PASS DP=44;GPV=1;SPV=0.059347;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,7:9,1 +chr1 223963079 . CA C 0 PASS DP=43;GPV=1;SPV=0.0013797;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,9:1,7:2,2 +chr1 224209064 . G A 0 PASS DP=67;GPV=1;SPV=0.013912;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,10:11,8:10,2 +chr1 226243695 . CA C 0 PASS DP=29;GPV=1;SPV=0.0015608;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,5:2,1 +chr1 226844827 . A G 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:5,8:6,6 +chr1 226845216 . T A 0 PASS DP=60;GPV=1;SPV=0.026716;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,8:10,7:7,1 +chr1 226960345 . G GTGGTGGTGCT 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,3:14,1 +chr1 226960383 . G GTGATGGTACT 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr1 230038337 . AGG A 0 PASS DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:26,3:10,1 +chr1 230626692 . A T 0 PASS DP=50;GPV=1;SPV=0.20263;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,5:11,2:10,3 +chr1 230986668 . ATTTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,3:4,1 +chr1 232314349 . T C 0 PASS DP=57;GPV=1;SPV=0.016158;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:12,6:14,1 +chr1 233285686 . C A 0 PASS DP=89;GPV=1;SPV=0.045641;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:31,5:19,2:12,3 +chr1 233400932 . C CA 0 PASS DP=62;GPV=1;SPV=0.018721;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,11:13,2 +chr1 234181071 . G A 0 PASS DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:15,7:7,12 +chr1 234995695 . A G 0 PASS DP=81;GPV=1;SPV=0.032711;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,10:17,8:12,2 +chr1 235353791 . T TGTTG 0 PASS DP=41;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:7,4:12,1 +chr1 235924946 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:5,4:5,3 +chr1 235924960 . CACACACAT C 0 PASS DP=42;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,7:1,3:3,4 +chr1 235961336 . C CT 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,7:7,1 +chr1 236106068 . G GT 0 PASS DP=49;GPV=1;SPV=0.00032973;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:6,7:10,5 +chr1 236279504 . C CAAAAA 0 PASS DP=53;GPV=1;SPV=0.043812;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,10:15,8:9,2 +chr1 237077437 . T C 0 PASS DP=62;GPV=1;SPV=0.031538;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,6:11,2 +chr1 237133924 . C CAAAAAA 0 PASS DP=49;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:8,9:6,8:2,1 +chr1 237536714 . C CAA 0 PASS DP=49;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,7:5,2 +chr1 237795838 . A G 0 PASS DP=64;GPV=1;SPV=0.026412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3 +chr1 237883979 . CACAA C 0 PASS DP=35;GPV=1;SPV=0.076601;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:7,5:5,2 +chr1 239563916 . A T 0 PASS DP=88;GPV=1;SPV=5.9535e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:30,24:16,12:14,12 +chr1 240708216 . C T 0 PASS DP=84;GPV=1;SPV=2.0574e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,25:8,19:12,6 +chr1 240916109 . C CA 0 PASS DP=44;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,6:5,3 +chr1 241562906 . G A 0 PASS DP=21;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:5,1:2,1 +chr1 241771945 . CAT C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:2,8:2,1 +chr1 243317319 . A AT 0 PASS DP=70;GPV=1;SPV=0.039035;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,13:17,6:14,7 +chr1 244479028 . C CA 0 PASS DP=30;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,3:5,1 +chr1 245281529 . C T 0 PASS DP=54;GPV=1;SPV=0.027239;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,8:11,1 +chr1 246825912 . T TTGTG 0 PASS DP=58;GPV=1;SPV=0.030728;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:8,1:8,4 +chr1 248170703 . G A 0 PASS DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,1:19,3 +chr1 248383360 . A C 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr1 248657457 . T TAC 0 PASS DP=99;GPV=1;SPV=0.034303;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:22,10:21,2 +chr1 248753485 . A C 0 PASS DP=32;GPV=1;SPV=0.029941;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2 +chr1 248753486 . CAT C 0 PASS DP=32;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2 +chr10 53793 . A C 0 PASS DP=73;GPV=1;SPV=0.0083305;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,6:9,3 +chr10 1159831 . T C 0 PASS DP=62;GPV=1;SPV=0.042775;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,2:11,4 +chr10 1499307 . C T 0 PASS DP=41;GPV=1;SPV=1.9296e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:3,14:2,10:1,4 +chr10 1777971 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:1,5:2,1 +chr10 2544339 . G T 0 PASS DP=77;GPV=1;SPV=3.7128e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:18,8:12,11 +chr10 2562056 . C T 0 PASS DP=68;GPV=1;SPV=7.8465e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:12,6:12,8 +chr10 3179629 . T TGTGTC 0 PASS DP=56;GPV=1;SPV=0.029934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:12,5:6,1 +chr10 3318475 . G C 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2 +chr10 3440844 . A G 0 PASS DP=76;GPV=1;SPV=0.049115;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,5:19,1 +chr10 3545930 . G GTTATTA 0 PASS DP=57;GPV=1;SPV=0.039741;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,2:10,6 +chr10 4513347 . A ATTT 0 PASS DP=54;GPV=1;SPV=0.0023616;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,13:6,2 +chr10 5249117 . A C 0 PASS DP=23;GPV=1;SPV=0.16149;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:6,1:4,2 +chr10 5428038 . CTTTTTTTT C 0 PASS DP=48;GPV=1;SPV=0.0027337;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,11:5,4:5,7 +chr10 5428047 . T C 0 PASS DP=31;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,9:5,4:3,5 +chr10 6115875 . A T 0 PASS DP=68;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:8,4:8,2:0,2 +chr10 6161643 . G T 0 PASS DP=56;GPV=1;SPV=0.018989;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,7:8,6 +chr10 6206367 . A G 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,3:5,1 +chr10 6345669 . C CCATCCATCCATCCATG 0 PASS DP=39;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:18,4:5,1 +chr10 6410976 . C CA 0 PASS DP=42;GPV=1;SPV=0.046544;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:14,8:3,1 +chr10 6819421 . T C 0 PASS DP=34;GPV=1;SPV=0.0017612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,5:4,4 +chr10 6819425 . CG C 0 PASS DP=36;GPV=1;SPV=0.0017841;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,5:4,4 +chr10 6911780 . CTT C 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr10 7113568 . A G 0 PASS DP=20;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,3:0,2 +chr10 8084592 . C CA 0 PASS DP=54;GPV=1;SPV=0.048243;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,7:12,5:8,2 +chr10 10759296 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:3,6:3,1 +chr10 10988298 . G T 0 PASS DP=70;GPV=1;SPV=7.0959e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,15:16,10:9,5 +chr10 11426859 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr10 11736399 . C G 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:13,3:3,1 +chr10 12007833 . AG A 0 PASS DP=52;GPV=1;SPV=0.041563;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:3,1:4,3 +chr10 12267997 . C CT 0 PASS DP=35;GPV=1;SPV=0.00030073;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:2,5:4,8 +chr10 12307313 . T C 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,3:5,2 +chr10 12333229 . A AAAAAAAAAC 0 PASS DP=54;GPV=1;SPV=0.030024;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,11:13,9:9,2 +chr10 12564155 . C CTGTCTG 0 PASS DP=49;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,6:10,3:8,3 +chr10 12644826 . A G 0 PASS DP=83;GPV=1;SPV=2.728e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:13,13:15,6 +chr10 13072859 . TTTTC T 0 PASS DP=34;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,2:7,5 +chr10 14039459 . T A 0 PASS DP=53;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,9:6,3:3,6 +chr10 14280982 . A AT 0 PASS DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,4:4,3 +chr10 14339933 . C T 0 PASS DP=88;GPV=1;SPV=2.3136e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,23:7,9:14,14 +chr10 14517750 . C G 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,2:16,2 +chr10 14690027 . G A 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:25,3:1,1 +chr10 15052729 . C CT 0 PASS DP=47;GPV=1;SPV=0.032;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,6:4,1 +chr10 15287091 . C CT 0 PASS DP=48;GPV=1;SPV=0.037022;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:13,7:5,1 +chr10 17404064 . CA C 0 PASS DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,9:4,2 +chr10 17507626 . A G 0 PASS DP=64;GPV=1;SPV=0.1396;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,5:12,3:12,2 +chr10 18107602 . C T 0 PASS DP=71;GPV=1;SPV=9.6406e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,7:9,7 +chr10 18137133 . C T 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,1:14,3 +chr10 18787462 . A C 0 PASS DP=45;GPV=1;SPV=0.0091605;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,3:8,3 +chr10 19334119 . G GTTT 0 PASS DP=29;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:3,3:6,4 +chr10 19695519 . CTT C 0 PASS DP=48;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,13:6,8:4,5 +chr10 19876601 . CAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1 +chr10 20217596 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,7:2,1 +chr10 20914969 . A ATTTT 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,6:7,4 +chr10 21408723 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:8,7:1,2 +chr10 21813165 . TCTCTCTCTCC T 0 PASS DP=29;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,1:9,3 +chr10 23136121 . C CAA 0 PASS DP=40;GPV=1;SPV=0.048713;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:10,9:3,1 +chr10 24018556 . A C 0 PASS DP=68;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:7,2:0,1:7,1 +chr10 24656407 . G C 0 PASS DP=41;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,3:17,1 +chr10 24829333 . CTTTCTTTCTT C 0 PASS DP=51;GPV=1;SPV=0.12909;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,1:23,5 +chr10 25403110 . C T 0 PASS DP=87;GPV=1;SPV=7.0452e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:11,13:17,7 +chr10 26240731 . C CA 0 PASS DP=49;GPV=1;SPV=0.0086905;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,7:7,5 +chr10 26245250 . G A 0 PASS DP=60;GPV=1;SPV=2.174e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,5:5,7 +chr10 28155598 . C CAAAAAAAAA 0 PASS DP=51;GPV=1;SPV=0.022459;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:10,4:3,1 +chr10 28347052 . C A 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,2:11,3 +chr10 29037896 . A ATTAT 0 PASS DP=84;GPV=1;SPV=0.015407;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,13:9,6:16,7 +chr10 30679362 . C A 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,3:11,1 +chr10 31670539 . C T 0 PASS DP=68;GPV=1;SPV=0.027747;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,7:15,3 +chr10 32061248 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,9:5,7:4,2 +chr10 32619910 . CTTTTTTTTTTT C 0 PASS DP=43;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,12:8,4:4,8 +chr10 33870971 . T TAAA 0 PASS DP=46;GPV=1;SPV=0.20486;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,3:17,2:4,1 +chr10 34492615 . C T 0 PASS DP=90;GPV=1;SPV=5.8377e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:25,28:15,17:10,11 +chr10 34851877 . CTT C 0 PASS DP=41;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,8:5,2:5,6 +chr10 35497726 . C CA 0 PASS DP=51;GPV=1;SPV=0.022827;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:18,10:1,2 +chr10 35514075 . C CA 0 PASS DP=28;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:8,3:1,1 +chr10 36768081 . T C 0 PASS DP=82;GPV=1;SPV=1.5203e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:10,7:18,8 +chr10 38112798 . G T 0 PASS DP=59;GPV=1;SPV=0.0082728;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,10:5,6:8,4 +chr10 38633095 . C A 0 PASS DP=116;GPV=1;SPV=1.6658e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:49,18:24,9:25,9 +chr10 38716636 . A AT 0 PASS DP=50;GPV=1;SPV=0.00099441;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:12,8:4,1 +chr10 38812968 . CCATTCCATTT C 0 PASS DP=62;GPV=1;SPV=0.026083;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:18,7:8,6 +chr10 38891590 . A T 0 PASS DP=33;GPV=1;SPV=0.021739;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:6,4:3,2 +chr10 38911635 . ACAGTGGAGTG A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr10 38920914 . C G 0 PASS DP=269;GPV=1;SPV=0.0065695;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:121,30:68,13:53,17 +chr10 38932039 . A AG 0 PASS DP=147;GPV=1;SPV=0.022433;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:46,8:32,7:14,1 +chr10 38966310 . C CACAA 0 PASS DP=363;GPV=1;SPV=0.038776;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:172,25:93,14:79,11 +chr10 38969377 . C G 0 PASS DP=111;GPV=1;SPV=0.00080513;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:24,9:15,7 +chr10 38973239 . CT C 0 PASS DP=51;GPV=1;SPV=0.00045089;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:7,8:10,3 +chr10 39691510 . C T 0 PASS DP=24;GPV=1;SPV=0.011374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,6:2,4 +chr10 39719987 . G A 0 PASS DP=71;GPV=1;SPV=0.046828;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:28,4:7,5 +chr10 39845077 . C A 0 PASS DP=100;GPV=1;SPV=0.049919;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:36,5:7,1 +chr10 40066085 . C T 0 PASS DP=451;GPV=1;SPV=0.028977;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:208,33:47,5:161,28 +chr10 40217971 . G A 0 PASS DP=64;GPV=1;SPV=0.040749;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:12,12:17,2 +chr10 40387974 . G C 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:19,1:2,3 +chr10 40408508 . C A 0 PASS DP=249;GPV=1;SPV=0.0081709;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:110,17:82,15:28,2 +chr10 40426686 . A G 0 PASS DP=160;GPV=1;SPV=0.0093405;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:18,4:48,4 +chr10 40484098 . G T 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:10,3:17,1 +chr10 40541808 . C T 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,2:6,2 +chr10 40547140 . A T 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr10 40854565 . T C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr10 40895085 . A C 0 PASS DP=108;GPV=1;SPV=0.046035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:30,5:19,4 +chr10 40963846 . T A 0 PASS DP=97;GPV=1;SPV=0.01835;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:4,5:31,5 +chr10 41117922 . T G 0 PASS DP=75;GPV=1;SPV=0.062923;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:18,4:21,1 +chr10 41222386 . G A 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4 +chr10 41228173 . A T 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr10 41232714 . G T 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:10,2:23,2 +chr10 41360989 . G C 0 PASS DP=68;GPV=1;SPV=0.01483;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:2,1:27,5 +chr10 41425052 . T C 0 PASS DP=61;GPV=1;SPV=0.017441;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:24,9:3,2 +chr10 41425419 . T G 0 PASS DP=219;GPV=1;SPV=0.028155;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,19:77,16:12,3 +chr10 41498689 . T A 0 PASS DP=78;GPV=1;SPV=0.090326;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:42,2:2,3 +chr10 41506033 . T G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr10 41509795 . G C 0 PASS DP=125;GPV=1;SPV=0.021029;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:27,1:25,6 +chr10 41527683 . G C 0 PASS DP=89;GPV=1;SPV=0.035034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:36,4:10,2 +chr10 41550590 . C T 0 PASS DP=219;GPV=1;SPV=0.0098271;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:40,4:58,9 +chr10 41563298 . G A 0 PASS DP=112;GPV=1;SPV=0.010615;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:57,8:14,1:43,7 +chr10 41571058 . G T 0 PASS DP=329;GPV=1;SPV=0.038805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:159,27:81,8:78,19 +chr10 41574180 . C G 0 PASS DP=156;GPV=1;SPV=0.028312;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:39,12:36,4 +chr10 41576085 . G A 0 PASS DP=184;GPV=1;SPV=0.00030758;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:83,29:39,22:44,7 +chr10 41705085 . T A 0 PASS DP=58;GPV=1;SPV=0.0093079;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,4:10,2 +chr10 41893643 . G T 0 PASS DP=128;GPV=1;SPV=0.0083873;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:62,20:31,8:31,12 +chr10 41895333 . A C 0 PASS DP=82;GPV=1;SPV=0.028327;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,12:19,5:16,7 +chr10 41912745 . G C 0 PASS DP=485;GPV=1;SPV=0.01458;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:289:259,30:136,15:123,15 +chr10 42070501 . G T 0 PASS DP=3887;GPV=1;SPV=0.038722;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2243:1978,262:1920,253:58,9 +chr10 42072684 . G C 0 PASS DP=572;GPV=1;SPV=0.044586;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:324:284,40:22,2:262,38 +chr10 42077623 . T A 0 PASS DP=873;GPV=1;SPV=0.017567;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:471:422,49:185,34:237,15 +chr10 42077625 . A G 0 PASS DP=807;GPV=1;SPV=0.036286;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:440:383,57:156,28:227,29 +chr10 42078977 . C A 0 PASS DP=900;GPV=1;SPV=0.022287;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:500:446,54:387,29:59,25 +chr10 42130128 . T G 0 PASS DP=468;GPV=1;SPV=0.0011696;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:210,51:113,25:97,26 +chr10 42142848 . A T 0 PASS DP=104;GPV=1;SPV=0.03082;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:29,4:21,12 +chr10 42146210 . C G 0 PASS DP=92;GPV=1;SPV=0.043589;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:17,4:22,7 +chr10 42182059 . G T 0 PASS DP=56;GPV=1;SPV=0.037023;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:23,7:1,1 +chr10 43493708 . AAATATATATATATAT A 0 PASS DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:4,4:4,3 +chr10 44202309 . TAAAAAAAAAAAAAAAAA T 0 PASS DP=23;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,5:1,5 +chr10 45784310 . AT A 0 PASS DP=25;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,2:0,6 +chr10 45794560 . A T 0 PASS DP=48;GPV=1;SPV=0.097509;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,5:10,1:9,4 +chr10 46726100 . T C 0 PASS DP=174;GPV=1;SPV=9.7584e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:70,29:29,13:41,16 +chr10 47230850 . G A 0 PASS DP=71;GPV=1;SPV=1.4139e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,25:11,10:8,15 +chr10 47526940 . G A 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,1:19,3 +chr10 47542263 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr10 47623839 . T A 0 PASS DP=66;GPV=1;SPV=2.0822e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:9,11:6,7 +chr10 47743405 . T A 0 PASS DP=22;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,5:2,1 +chr10 49096622 . C CGT 0 PASS DP=60;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,15:11,9:11,6 +chr10 49212799 . A AAG 0 PASS DP=42;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:9,4:3,1 +chr10 49968267 . G A 0 PASS DP=88;GPV=1;SPV=0.019572;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,9:21,6:19,3 +chr10 50006736 . C G 0 PASS DP=87;GPV=1;SPV=0.032391;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,6:18,3 +chr10 50012825 . G A 0 PASS DP=57;GPV=1;SPV=0.0037422;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:13,3:6,12 +chr10 50709797 . G A 0 PASS DP=43;GPV=1;SPV=0.038146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,2:9,6 +chr10 50748900 . T G 0 PASS DP=87;GPV=1;SPV=0.042021;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:19,2:20,5 +chr10 52244815 . A AAT 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,2:9,3 +chr10 52244825 . A G 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,2:8,3 +chr10 52244830 . AC A 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3 +chr10 52244836 . AT A 0 PASS DP=50;GPV=1;SPV=0.046386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3 +chr10 53469806 . G C 0 PASS DP=68;GPV=1;SPV=0.0030753;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,21:8,8:17,13 +chr10 53639326 . C T 0 PASS DP=17;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:0,0:6,2 +chr10 54155194 . G A 0 PASS DP=62;GPV=1;SPV=0.00016659;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,4:11,7 +chr10 54655302 . GAC G 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr10 55330870 . A G 0 PASS DP=48;GPV=1;SPV=0.073064;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:8,3:19,4 +chr10 55538966 . T C 0 PASS DP=23;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,2:1,1:4,1 +chr10 55802444 . G GT 0 PASS DP=57;GPV=1;SPV=0.00015814;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:11,9:9,9 +chr10 56247968 . A C 0 PASS DP=70;GPV=1;SPV=2.068e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:12,6:9,13 +chr10 56373261 . C CT 0 PASS DP=45;GPV=1;SPV=0.044964;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,10:8,2 +chr10 56402550 . A C 0 PASS DP=82;GPV=1;SPV=6.0445e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:11,9:13,9 +chr10 57173571 . T TAAA 0 PASS DP=55;GPV=1;SPV=0.0027704;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,10:12,4:4,6 +chr10 59067922 . G A 0 PASS DP=86;GPV=1;SPV=0.00030171;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:21,10:15,3 +chr10 59760440 . C T 0 PASS DP=64;GPV=1;SPV=1.2598e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:10,8:7,10 +chr10 60724209 . C CA 0 PASS DP=35;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,6:8,1 +chr10 62311289 . G C 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:21,2:7,2 +chr10 62556385 . G A 0 PASS DP=91;GPV=1;SPV=3.0481e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:34,22:19,11:15,11 +chr10 62947004 . GTCCCTC G 0 PASS DP=42;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:3,4:13,5 +chr10 63031081 . CTTTT C 0 PASS DP=29;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,4:3,2 +chr10 63309494 . C CA 0 PASS DP=42;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:9,7:5,1 +chr10 63500746 . A T 0 PASS DP=74;GPV=1;SPV=0.0082708;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,14:10,7:16,7 +chr10 63828472 . C T 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,7:6,2 +chr10 65221068 . C T 0 PASS DP=65;GPV=1;SPV=5.6124e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:12,13:5,7 +chr10 66050424 . AT A 0 PASS DP=67;GPV=1;SPV=0.00037324;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:8,6:15,4 +chr10 66840364 . TCTCTCTCTCACACA T 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,2:11,3 +chr10 68018900 . C CT 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,5:2,2 +chr10 68676257 . TATATATATATA T 0 PASS DP=24;GPV=1;SPV=0.05;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,3:0,1:0,2 +chr10 69434486 . T C 0 PASS DP=87;GPV=1;SPV=3.1322e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,23:11,13:10,10 +chr10 69804809 . CAAAAAAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:10,7:1,2 +chr10 70248467 . G GT 0 PASS DP=21;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:3,5:2,2 +chr10 70663953 . T TA 0 PASS DP=36;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:9,6:2,1 +chr10 70768302 . CAA C 0 PASS DP=40;GPV=1;SPV=0.0020704;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:4,6:3,2 +chr10 71689203 . TTGGTGGAGTCAGGGA T 0 PASS DP=44;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,6:11,3:7,3 +chr10 71759838 . CACACACACATAT C 0 PASS DP=33;GPV=1;SPV=0.0070729;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,4:4,6 +chr10 72805099 . TTC T 0 PASS DP=64;GPV=1;SPV=0.050167;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,5:4,1:26,4 +chr10 73188768 . A G 0 PASS DP=52;GPV=1;SPV=0.011153;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:6,3:6,1 +chr10 74052946 . A AT 0 PASS DP=54;GPV=1;SPV=0.0032284;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:14,4:7,5 +chr10 74136202 . A G 0 PASS DP=77;GPV=1;SPV=4.5725e-12;SS=2;SSC=113;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:12,33:6,15:6,18 +chr10 75048398 . C CT 0 PASS DP=37;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,7:6,5 +chr10 75159063 . C CTTTTTTT 0 PASS DP=48;GPV=1;SPV=0.0729;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:11,5:13,1 +chr10 77025240 . G GTATATA 0 PASS DP=30;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,4:2,2 +chr10 78138404 . G A 0 PASS DP=67;GPV=1;SPV=0.068312;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2 +chr10 78276605 . A ATT 0 PASS DP=52;GPV=1;SPV=0.0057333;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,5:8,5 +chr10 79063602 . C T 0 PASS DP=73;GPV=1;SPV=7.241e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:10,16:12,7 +chr10 79212197 . G A 0 PASS DP=80;GPV=1;SPV=9.9383e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:23,24:14,13:9,11 +chr10 79533787 . A AAACAACAACAAC 0 PASS DP=59;GPV=1;SPV=0.046347;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:17,1:6,5 +chr10 79755284 . A G 0 PASS DP=43;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,5:4,1 +chr10 79758480 . G A 0 PASS DP=30;GPV=1;SPV=0.39766;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:6,3:7,1 +chr10 80232305 . T TA 0 PASS DP=43;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,7:5,5:1,2 +chr10 80930787 . CCTAAATGTAAGAG C 0 PASS DP=64;GPV=1;SPV=0.00073638;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:17,6:10,8 +chr10 81693944 . A G 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,1:7,3 +chr10 81693976 . G A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr10 82968662 . A T 0 PASS DP=40;GPV=1;SPV=0.046139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:18,3:1,3 +chr10 83295063 . G A 0 PASS DP=60;GPV=1;SPV=6.9734e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:15,21:6,11:9,10 +chr10 83989626 . C CAGAAAGAA 0 PASS DP=41;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:12,4:8,1 +chr10 84600483 . CTT C 0 PASS DP=49;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,8:5,7:4,1 +chr10 85694558 . A G 0 PASS DP=21;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:3,2:0,1 +chr10 85745182 . G C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr10 86161139 . C T 0 PASS DP=78;GPV=1;SPV=4.8508e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:12,6:11,14 +chr10 86850612 . A G 0 PASS DP=60;GPV=1;SPV=0.00016135;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,5:10,7 +chr10 87063069 . G T 0 PASS DP=62;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,4:6,2:9,2 +chr10 87234735 . C T 0 PASS DP=62;GPV=1;SPV=0.014185;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:20,3:6,7 +chr10 87964537 . C A 0 PASS DP=74;GPV=1;SPV=0.026092;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,7:10,3:11,4 +chr10 88546974 . A AC 0 PASS DP=67;GPV=1;SPV=1.6102e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,10:13,5 +chr10 90050470 . T A 0 PASS DP=64;GPV=1;SPV=0.029089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,9:7,3:11,6 +chr10 90070613 . C CT 0 PASS DP=25;GPV=1;SPV=0.0038279;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:2,6:4,3 +chr10 91389230 . C CT 0 PASS DP=30;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,7:3,1 +chr10 91400009 . G A 0 PASS DP=79;GPV=1;SPV=2.5306e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:17,14:10,8 +chr10 91573283 . G GAA 0 PASS DP=45;GPV=1;SPV=0.040021;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:14,4:3,1 +chr10 91898698 . C CT 0 PASS DP=31;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:6,6:4,1 +chr10 92025810 . C CA 0 PASS DP=36;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:5,7:2,1 +chr10 92580171 . A G 0 PASS DP=63;GPV=1;SPV=4.4794e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:12,11:6,6 +chr10 93141921 . A ATGTG 0 PASS DP=31;GPV=1;SPV=0.23612;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1 +chr10 93369110 . C CT 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chr10 95365173 . A ATGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:4,2:9,2 +chr10 96142315 . T G 0 PASS DP=64;GPV=1;SPV=0.0092066;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:15,6:10,9 +chr10 96629930 . A G 0 PASS DP=24;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,4:4,3:0,1 +chr10 96663627 . C CA 0 PASS DP=32;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:6,6:3,1 +chr10 96676655 . T A 0 PASS DP=63;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:1,3:1,2:0,1 +chr10 99094551 . T A 0 PASS DP=23;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:1,4:4,3 +chr10 99669740 . G GT 0 PASS DP=26;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:8,1:3,5 +chr10 100111300 . AG A 0 PASS DP=46;GPV=1;SPV=0.044862;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:6,6:17,1 +chr10 100368998 . A T 0 PASS DP=84;GPV=1;SPV=4.3898e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,20:15,13:15,7 +chr10 100698242 . C T 0 PASS DP=109;GPV=1;SPV=6.3645e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:41,23:22,11:19,12 +chr10 101075616 . A T 0 PASS DP=56;GPV=1;SPV=0.31501;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,5:18,3:6,2 +chr10 101318994 . G A 0 PASS DP=34;GPV=1;SPV=0.27607;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,4:10,1:6,3 +chr10 101343299 . A T 0 PASS DP=90;GPV=1;SPV=6.3041e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:34,20:20,5:14,15 +chr10 102638179 . TA T 0 PASS DP=71;GPV=1;SPV=0.024526;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:22,5:16,3 +chr10 103251002 . T C 0 PASS DP=54;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,4:2,0:24,4 +chr10 105242432 . A ATATT 0 PASS DP=57;GPV=1;SPV=0.014077;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:1,1:10,5 +chr10 105242433 . C T 0 PASS DP=57;GPV=1;SPV=0.014077;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:1,1:10,5 +chr10 106342384 . T TTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr10 106764798 . C T 0 PASS DP=87;GPV=1;SPV=1.2829e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:22,31:13,19:9,12 +chr10 107220138 . A ACTCTCTCTCT 0 PASS DP=36;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:3,4:4,3 +chr10 107333064 . C CTT 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr10 108073020 . A AACACACAC 0 PASS DP=35;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:14,6:1,4 +chr10 108244394 . C CTG 0 PASS DP=56;GPV=1;SPV=0.037712;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,9:12,5:12,4 +chr10 108335624 . CT C 0 PASS DP=68;GPV=1;SPV=1.135e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:13,9:9,8 +chr10 108335629 . C G 0 PASS DP=72;GPV=1;SPV=3.7627e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:12,9:10,8 +chr10 109514597 . G A 0 PASS DP=65;GPV=1;SPV=1.5408e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:7,10:14,7 +chr10 110360446 . C T 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,1:14,3 +chr10 111631182 . C A 0 PASS DP=76;GPV=1;SPV=0.00024281;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:18,7:13,7 +chr10 111733716 . TATAG T 0 PASS DP=43;GPV=1;SPV=0.0036085;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,5:6,2 +chr10 111747465 . T G 0 PASS DP=77;GPV=1;SPV=2.2731e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:16,10:13,9 +chr10 112207705 . A G 0 PASS DP=75;GPV=1;SPV=9.2378e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:19,13:11,4 +chr10 113077858 . CTTATTTATTTATTTATTTAT C 0 PASS DP=58;GPV=1;SPV=0.015787;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:16,4:12,4 +chr10 115148744 . G GTT 0 PASS DP=31;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:4,5:7,1 +chr10 115310134 . A G 0 PASS DP=73;GPV=1;SPV=1.1571e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:14,8:12,13 +chr10 117305485 . C T 0 PASS DP=61;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,4:12,3:13,1 +chr10 124961033 . T A 0 PASS DP=83;GPV=1;SPV=2.4168e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:23,26:13,14:10,12 +chr10 125282185 . C T 0 PASS DP=77;GPV=1;SPV=2.1528e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:15,10:10,10 +chr10 125570181 . T A 0 PASS DP=89;GPV=1;SPV=2.4766e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:21,11:15,8 +chr10 125894933 . GC G 0 PASS DP=155;GPV=1;SPV=0.020645;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:70,21:34,11:36,10 +chr10 126645504 . C T 0 PASS DP=58;GPV=1;SPV=0.00011008;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,5:7,8 +chr10 126659528 . C T 0 PASS DP=91;GPV=1;SPV=4.2071e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:33,19:16,16:17,3 +chr10 127508738 . C A 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,1:11,3 +chr10 128961543 . C T 0 PASS DP=89;GPV=1;SPV=1.8449e-09;SS=2;SSC=87;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:23,28:12,15:11,13 +chr10 130129930 . T A 0 PASS DP=66;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,4:10,2:12,2 +chr10 130786522 . C A 0 PASS DP=65;GPV=1;SPV=2.1154e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,2:9,11 +chr10 131176620 . AC A 0 PASS DP=109;GPV=1;SPV=0.055387;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:69,8:37,2:32,6 +chr10 131346980 . CCTT C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr10 131540385 . CTT C 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,3:6,3 +chr10 132622891 . A ACCGT 0 PASS DP=38;GPV=1;SPV=0.0065388;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:12,7:2,1 +chr10 133011515 . GTGTGTTAGTGTGTGA G 0 PASS DP=127;GPV=1;SPV=0.01692;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:58,7:33,2:25,5 +chr10 133042047 . A T 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1 +chr10 133181833 . T TACACACACACACACAC 0 PASS DP=68;GPV=1;SPV=0.04979;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,13:18,7:12,6 +chr10 133431304 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr10 133658674 . C G 0 PASS DP=141;GPV=1;SPV=0.029612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:51,9:18,5 +chr11 128855 . G A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,1:6,3 +chr11 696767 . CAAAAA C 0 PASS DP=46;GPV=1;SPV=0.010948;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,11:7,6:5,5 +chr11 2938092 . GGTGTGAATATGCTTT G 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chr11 3206756 . A G 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:14,2:19,4 +chr11 3556345 . C T 0 PASS DP=78;GPV=1;SPV=0.045597;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:19,2:19,3 +chr11 4287898 . C T 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,2:8,3 +chr11 4290799 . C T 0 PASS DP=253;GPV=1;SPV=0.0087657;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:114,27:61,18:53,9 +chr11 5175771 . TCCC T 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2 +chr11 5537895 . T G 0 PASS DP=72;GPV=1;SPV=0.0033931;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,10:12,4 +chr11 5693189 . C CT 0 PASS DP=26;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,5:3,1 +chr11 6496505 . C CTT 0 PASS DP=26;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,4:2,2 +chr11 7694803 . C CTTT 0 PASS DP=48;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,9:10,7:9,2 +chr11 8434077 . G T 0 PASS DP=72;GPV=1;SPV=9.2295e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,25:11,18:8,7 +chr11 9229899 . C CT 0 PASS DP=26;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:2,4:4,1 +chr11 9419560 . AT A 0 PASS DP=43;GPV=1;SPV=0.063176;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:7,4:16,3 +chr11 9868366 . A AG 0 PASS DP=33;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:9,1:4,3 +chr11 10310651 . G C 0 PASS DP=63;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,4:10,1:8,3 +chr11 10680344 . GGAAA G 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr11 12010756 . A G 0 PASS DP=57;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,4:6,3:19,1 +chr11 12289556 . G T 0 PASS DP=40;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:9,1:1,4 +chr11 13002884 . CTCTCTCTGTG C 0 PASS DP=62;GPV=1;SPV=0.013277;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:11,4:15,5 +chr11 14425512 . C CA 0 PASS DP=55;GPV=1;SPV=0.00042977;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,9:10,6:5,3 +chr11 14779766 . A T 0 PASS DP=66;GPV=1;SPV=6.0898e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,5:9,9 +chr11 15422225 . A AT 0 PASS DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:20,9:11,8 +chr11 16389969 . T TAAAA 0 PASS DP=45;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:7,2:12,2 +chr11 16480645 . A AC 0 PASS DP=57;GPV=1;SPV=0.014699;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:5,2:17,13 +chr11 18512723 . A ATTT 0 PASS DP=41;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:10,8:5,2 +chr11 20275711 . C T 0 PASS DP=61;GPV=1;SPV=0.00012961;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:9,6:11,6 +chr11 21269378 . A T 0 PASS DP=70;GPV=1;SPV=0.0068563;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:14,5:19,4 +chr11 21501591 . G A 0 PASS DP=80;GPV=1;SPV=2.3315e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:13,8:11,8 +chr11 21697973 . A AATTGT 0 PASS DP=24;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,5:1,2 +chr11 22269541 . AAAGG A 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,1:3,3 +chr11 24745610 . G A 0 PASS DP=88;GPV=1;SPV=1.6713e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:13,10:9,10 +chr11 25651441 . C T 0 PASS DP=48;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,8:6,2:7,6 +chr11 25651442 . G T 0 PASS DP=49;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,8:7,2:7,6 +chr11 25680333 . C T 0 PASS DP=77;GPV=1;SPV=1.2783e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,25:9,14:13,11 +chr11 25902175 . CATATATACAT C 0 PASS DP=29;GPV=1;SPV=0.15556;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,3:11,1:1,2 +chr11 25902191 . C T 0 PASS DP=31;GPV=1;SPV=0.18154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:11,1:4,2 +chr11 25902197 . CAT C 0 PASS DP=33;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,1:4,3 +chr11 26150425 . G T 0 PASS DP=73;GPV=1;SPV=5.242e-11;SS=2;SSC=102;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:12,27:5,20:7,7 +chr11 26406676 . AGT A 0 PASS DP=29;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:4,7:3,3 +chr11 26418714 . G A 0 PASS DP=95;GPV=1;SPV=4.9538e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:38,24:19,13:19,11 +chr11 29476007 . T A 0 PASS DP=84;GPV=1;SPV=3.5765e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:14,13:13,11 +chr11 31294814 . G T 0 PASS DP=48;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,4:22,3:0,1 +chr11 31294820 . AAG A 0 PASS DP=45;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,4:17,3:1,1 +chr11 32755665 . A ATGTG 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:3,2:14,2 +chr11 33844928 . T C 0 PASS DP=68;GPV=1;SPV=0.051974;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,5:20,4:13,1 +chr11 33854868 . C CA 0 PASS DP=53;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,8:7,5:10,3 +chr11 34734637 . AT A 0 PASS DP=68;GPV=1;SPV=1.5134e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:7,4:15,12 +chr11 35100537 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:12,4:8,1 +chr11 36105240 . A T 0 PASS DP=75;GPV=1;SPV=0.13128;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:27,5:10,2:17,3 +chr11 36146773 . C CTTTATTTTATTTTATTTTAT 0 PASS DP=51;GPV=1;SPV=0.040883;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,2:14,4 +chr11 36158525 . C T 0 PASS DP=20;GPV=1;SPV=0.0625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:2,1:2,2 +chr11 37001487 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:4,6:2,2 +chr11 37190545 . AAG A 0 PASS DP=37;GPV=1;SPV=0.0060611;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:8,9:3,2 +chr11 37362759 . G GA 0 PASS DP=38;GPV=1;SPV=0.020833;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:12,7:3,1 +chr11 37515803 . T A 0 PASS DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:16,3:17,2 +chr11 37743824 . T A 0 PASS DP=31;GPV=1;SPV=0.18154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:5,1:10,2 +chr11 37743835 . G A 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,2:10,3 +chr11 38560483 . A C 0 PASS DP=31;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:6,8:0,1 +chr11 40544332 . C T 0 PASS DP=65;GPV=1;SPV=0.00019397;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,10:12,5 +chr11 40998503 . G A 0 PASS DP=75;GPV=1;SPV=0.0012979;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:11,6:18,3 +chr11 41834706 . GTA G 0 PASS DP=29;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:4,3:4,5 +chr11 42844486 . T A 0 PASS DP=34;GPV=1;SPV=0.092437;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:4,3:3,2 +chr11 43147196 . T C 0 PASS DP=81;GPV=1;SPV=1.6364e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:11,10:16,11 +chr11 43788690 . A C 0 PASS DP=45;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1 +chr11 44348165 . C T 0 PASS DP=64;GPV=1;SPV=3.1322e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,21:6,10:10,11 +chr11 45448674 . G A 0 PASS DP=100;GPV=1;SPV=4.122e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:18,10:12,7 +chr11 46625279 . T C 0 PASS DP=40;GPV=1;SPV=0.0092889;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,4:9,7 +chr11 47809759 . G A 0 PASS DP=32;GPV=1;SPV=0.0015312;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:1,1:4,9 +chr11 48199359 . C CACACATATAT 0 PASS DP=54;GPV=1;SPV=0.024218;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,8:11,6:10,2 +chr11 49035339 . ATTTTTTTTTTTTT A 0 PASS DP=31;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:10,5:2,1 +chr11 49743675 . C CAAAAAAAA 0 PASS DP=26;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1 +chr11 51411656 . G A 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:3,0:31,4 +chr11 51583228 . A C 0 PASS DP=56;GPV=1;SPV=0.064666;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:24,4:1,0 +chr11 51612622 . A T 0 PASS DP=58;GPV=1;SPV=0.0030535;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:8,1:14,7 +chr11 51687436 . C T 0 PASS DP=76;GPV=1;SPV=0.031539;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:8,1:18,6 +chr11 51770980 . A G 0 PASS DP=349;GPV=1;SPV=0.020319;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:159,20:94,13:65,7 +chr11 52556390 . A G 0 PASS DP=298;GPV=1;SPV=0.0015334;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:139,20:54,8:85,12 +chr11 52673774 . C T 0 PASS DP=43;GPV=1;SPV=0.039259;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr11 52721947 . G T 0 PASS DP=172;GPV=1;SPV=0.012324;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,18:61,11:21,7 +chr11 52780877 . C T 0 PASS DP=35;GPV=1;SPV=0.28552;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr11 53328021 . C G 0 PASS DP=73;GPV=1;SPV=0.036498;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:18,2:13,5 +chr11 53345622 . G C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr11 53411563 . A C 0 PASS DP=142;GPV=1;SPV=0.030597;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:59,10:51,9:8,1 +chr11 53602042 . A G 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0 +chr11 53704843 . C G 0 PASS DP=91;GPV=1;SPV=0.010491;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:9,5:27,9 +chr11 53728797 . A T 0 PASS DP=166;GPV=1;SPV=0.02839;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:83,14:49,12:34,2 +chr11 54385190 . A T 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,2:6,4 +chr11 54406711 . C A 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:27,4:0,0 +chr11 54421856 . G T 0 PASS DP=84;GPV=1;SPV=0.045374;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:13,9:22,2 +chr11 54424282 . C G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr11 54580932 . T G 0 PASS DP=59;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:2,2:1,1:1,1 +chr11 55299524 . G GATATAT 0 PASS DP=34;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:8,5:0,0 +chr11 55642650 . C T 0 PASS DP=82;GPV=1;SPV=1.5716e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:15,10:10,7 +chr11 55815761 . CTCTCTCTCTCTCTATATATATATA C 0 PASS DP=27;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,1:5,3 +chr11 55900224 . C CAAAAAAAAAAAAAA 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,3:5,1 +chr11 56049215 . TGCAC T 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,1:15,4 +chr11 57633376 . C CAA 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr11 57790542 . C CTG 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1 +chr11 58697156 . G C 0 PASS DP=83;GPV=1;SPV=0.013898;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,4:17,2 +chr11 58774870 . C G 0 PASS DP=84;GPV=1;SPV=1.1952e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:23,29:14,16:9,13 +chr11 59645024 . C CT 0 PASS DP=35;GPV=1;SPV=0.017806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:3,4:12,6 +chr11 61642075 . T C 0 PASS DP=81;GPV=1;SPV=0.05702;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,5:23,2:18,3 +chr11 61853239 . T C 0 PASS DP=36;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:0,0:7,2 +chr11 62043126 . C CTATT 0 PASS DP=79;GPV=1;SPV=0.015202;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:15,6:24,7 +chr11 62090839 . G A 0 PASS DP=116;GPV=1;SPV=2.1747e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:40,27:18,12:22,15 +chr11 62245854 . C CTT 0 PASS DP=28;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,1:3,3 +chr11 62697384 . C A 0 PASS DP=34;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:8,1:6,5 +chr11 63077873 . T G 0 PASS DP=75;GPV=1;SPV=7.8642e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:10,9:7,8 +chr11 63802379 . C T 0 PASS DP=31;GPV=1;SPV=0.019162;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,3:7,4 +chr11 64114356 . GA G 0 PASS DP=37;GPV=1;SPV=0.053977;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:10,1:6,4 +chr11 66009427 . C CA 0 PASS DP=37;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,12:3,9:2,3 +chr11 66704429 . G A 0 PASS DP=81;GPV=1;SPV=5.6577e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,22:10,8:12,14 +chr11 67583357 . A AAT 0 PASS DP=81;GPV=1;SPV=0.073271;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,5:22,2:10,3 +chr11 67839931 . A ATTTTTTTTT 0 PASS DP=21;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,7:0,1:2,6 +chr11 68639250 . TC T 0 PASS DP=38;GPV=1;SPV=0.019168;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:2,4:15,8 +chr11 68855739 . G A 0 PASS DP=85;GPV=1;SPV=8.9862e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:11,11:17,10 +chr11 68888058 . CTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:2,5:4,1 +chr11 69071114 . A C 0 PASS DP=23;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,2:0,1:0,1 +chr11 69153941 . GTTTT G 0 PASS DP=31;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:6,3:1,4 +chr11 70076964 . C G 0 PASS DP=55;GPV=1;SPV=0.05053;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:20,5:11,3 +chr11 70194328 . G GTGGA 0 PASS DP=36;GPV=1;SPV=0.27357;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:7,3:7,2 +chr11 70196380 . T A 0 PASS DP=65;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,4:6,3:7,1 +chr11 70579739 . G A 0 PASS DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:12,8:13,7 +chr11 70833124 . C T 0 PASS DP=102;GPV=1;SPV=2.1659e-11;SS=2;SSC=106;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:22,26:11,16:11,10 +chr11 71146373 . C T 0 PASS DP=83;GPV=1;SPV=0.030755;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:16,8:19,5 +chr11 71344357 . G A 0 PASS DP=96;GPV=1;SPV=0.0076145;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:17,3:21,3 +chr11 71460622 . C G 0 PASS DP=87;GPV=1;SPV=5.304e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:12,8:20,12 +chr11 71642221 . C T 0 PASS DP=79;GPV=1;SPV=0.048187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,1:20,4 +chr11 71642222 . A G 0 PASS DP=72;GPV=1;SPV=0.035875;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:14,1:19,4 +chr11 72297636 . GGT G 0 PASS DP=49;GPV=1;SPV=0.084115;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,6:13,3:11,3 +chr11 72475951 . A ATTT 0 PASS DP=75;GPV=1;SPV=0.0041742;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,9:12,4:13,5 +chr11 76110211 . C CATATATATATATATATAT 0 PASS DP=48;GPV=1;SPV=0.20161;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:15,2:13,2 +chr11 76401773 . C CA 0 PASS DP=43;GPV=1;SPV=0.030583;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:8,6:3,1 +chr11 77005992 . T TA 0 PASS DP=29;GPV=1;SPV=0.022269;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,12:0,5:1,7 +chr11 77098510 . C T 0 PASS DP=42;GPV=1;SPV=0.32127;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,1:18,3 +chr11 77578002 . CA C 0 PASS DP=56;GPV=1;SPV=0.10544;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:21,2:7,2 +chr11 79681739 . C T 0 PASS DP=86;GPV=1;SPV=1.2077e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:11,12:14,9 +chr11 79696275 . C CATAT 0 PASS DP=52;GPV=1;SPV=0.072331;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:14,1:12,4 +chr11 79791527 . G A 0 PASS DP=74;GPV=1;SPV=3.308e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:10,7:15,7 +chr11 79831170 . G C 0 PASS DP=95;GPV=1;SPV=1.6566e-09;SS=2;SSC=87;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:25,26:13,16:12,10 +chr11 80243161 . C G 0 PASS DP=68;GPV=1;SPV=0.0014229;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,1:10,7 +chr11 80406888 . C T 0 PASS DP=82;GPV=1;SPV=0.00024094;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,6:16,3 +chr11 80479358 . CT C 0 PASS DP=38;GPV=1;SPV=0.030888;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1 +chr11 82424826 . TA T 0 PASS DP=71;GPV=1;SPV=3.3095e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:12,13:11,9 +chr11 82483317 . C CGTGTGT 0 PASS DP=49;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:6,8:4,2 +chr11 83850123 . A AGTGT 0 PASS DP=52;GPV=1;SPV=0.025519;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:7,3:1,3 +chr11 84058504 . T TAAAATAATAATAATA 0 PASS DP=41;GPV=1;SPV=0.19205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:6,4:9,3 +chr11 85205140 . G A 0 PASS DP=72;GPV=1;SPV=0.15143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:24,4:21,1 +chr11 88253114 . C A 0 PASS DP=30;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,4:1,3:3,1 +chr11 89005694 . G T 0 PASS DP=70;GPV=1;SPV=1.5248e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:14,11:10,7 +chr11 90611083 . TA T 0 PASS DP=24;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:5,3:0,2 +chr11 92765789 . A AG 0 PASS DP=48;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,5:5,4 +chr11 93549615 . A ATTTG 0 PASS DP=56;GPV=1;SPV=0.00015682;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,1:7,6 +chr11 93549627 . T A 0 PASS DP=56;GPV=1;SPV=9.3131e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,2:8,10 +chr11 93912142 . T TC 0 PASS DP=37;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:6,2:12,3 +chr11 95704253 . CTGGATCTGCCCAG C 0 PASS DP=62;GPV=1;SPV=7.4864e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:13,13:6,7 +chr11 96199196 . CA C 0 PASS DP=36;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:13,5:3,1 +chr11 96790885 . G GT 0 PASS DP=69;GPV=1;SPV=0.0030987;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:12,7:10,9 +chr11 96914325 . GTCTC G 0 PASS DP=42;GPV=1;SPV=0.0029007;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:5,4:5,2 +chr11 96949996 . C T 0 PASS DP=91;GPV=1;SPV=6.569e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:22,11:17,7 +chr11 98354556 . A T 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr11 98406759 . C CTT 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr11 98425657 . C CAAAAAAAAAAAAAAAA 0 PASS DP=27;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:4,6:4,1 +chr11 98832036 . G A 0 PASS DP=76;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:19,5:12,4 +chr11 99193908 . T A 0 PASS DP=72;GPV=1;SPV=1.4655e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:2,17:1,10:1,7 +chr11 99523668 . A T 0 PASS DP=46;GPV=1;SPV=0.26877;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,4:4,2:9,2 +chr11 99747460 . CT C 0 PASS DP=26;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,5:3,1 +chr11 99819481 . C T 0 PASS DP=74;GPV=1;SPV=0.048301;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:27,10:3,1 +chr11 100176610 . T C 0 PASS DP=58;GPV=1;SPV=4.3946e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:5,8:6,6 +chr11 100502368 . C T 0 PASS DP=73;GPV=1;SPV=6.6438e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,4:10,9 +chr11 101041779 . G GA 0 PASS DP=56;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:8,10:8,3 +chr11 101144253 . TA T 0 PASS DP=58;GPV=1;SPV=5.0774e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:5,8:14,8 +chr11 101785493 . TTTC T 0 PASS DP=62;GPV=1;SPV=0.00086088;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:8,2:15,8 +chr11 103025629 . ATACG A 0 PASS DP=44;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:10,3:11,1 +chr11 103025635 . A G 0 PASS DP=44;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:8,3:13,1 +chr11 103224749 . C T 0 PASS DP=70;GPV=1;SPV=1.2255e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,27:8,20:13,7 +chr11 103233875 . TGTGG T 0 PASS DP=56;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,11:3,4:8,7 +chr11 104119550 . A AATAT 0 PASS DP=26;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,3:0,3 +chr11 105472804 . G A 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:17,3:4,1 +chr11 106335502 . T C 0 PASS DP=64;GPV=1;SPV=0.012658;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,6:17,4 +chr11 106668985 . GATATAT G 0 PASS DP=47;GPV=1;SPV=0.16794;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:17,3:9,1 +chr11 106671248 . C CT 0 PASS DP=30;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:13,4:1,0 +chr11 107231861 . GAT G 0 PASS DP=42;GPV=1;SPV=0.075461;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:9,5:14,2 +chr11 107231878 . G GAT 0 PASS DP=40;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:12,4:8,1 +chr11 107231884 . G C 0 PASS DP=40;GPV=1;SPV=0.12376;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,5:9,1 +chr11 108922243 . CA C 0 PASS DP=31;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:11,4:3,1 +chr11 111028911 . C CA 0 PASS DP=46;GPV=1;SPV=0.0060788;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,12:8,10:7,2 +chr11 111898788 . G A 0 PASS DP=58;GPV=1;SPV=1.6305e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:7,8:4,8 +chr11 112394177 . A C 0 PASS DP=87;GPV=1;SPV=1.6597e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:25,29:15,18:10,11 +chr11 113485600 . C CA 0 PASS DP=35;GPV=1;SPV=0.0045179;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,13:6,11:3,2 +chr11 115111632 . G GACAC 0 PASS DP=51;GPV=1;SPV=0.031923;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,4:6,4 +chr11 115685919 . C T 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:2,3:14,1 +chr11 115831750 . ACCCT A 0 PASS DP=42;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:9,3:12,1 +chr11 116630100 . C T 0 PASS DP=71;GPV=1;SPV=9.9186e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:8,8:9,11 +chr11 117138905 . C CTT 0 PASS DP=31;GPV=1;SPV=0.14706;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:2,5:5,3 +chr11 118432823 . A AT 0 PASS DP=44;GPV=1;SPV=0.011333;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,7:7,4 +chr11 118763838 . TA T 0 PASS DP=63;GPV=1;SPV=0.040748;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:16,1:10,6 +chr11 119330536 . C CTTTTT 0 PASS DP=38;GPV=1;SPV=0.065325;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:5,2:10,3 +chr11 119448941 . C CAAAAA 0 PASS DP=42;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2 +chr11 120174924 . A T 0 PASS DP=88;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:4,4:2,3:2,1 +chr11 120580196 . GTTCT G 0 PASS DP=79;GPV=1;SPV=0.00089081;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,15:10,6:11,9 +chr11 121919473 . ATTTT A 0 PASS DP=31;GPV=1;SPV=0.016809;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,2:4,4 +chr11 122761779 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chr11 125584229 . CAAAAAAAA C 0 PASS DP=33;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:5,4:9,1 +chr11 126296217 . C CAA 0 PASS DP=43;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:2,8:4,2 +chr11 126302359 . CT C 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,4:1,2 +chr11 126725332 . G A 0 PASS DP=86;GPV=1;SPV=3.5005e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:9,12:14,9 +chr11 127052937 . GTAGTAATAATAA G 0 PASS DP=54;GPV=1;SPV=0.02692;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:12,7:9,5 +chr11 127306776 . TC T 0 PASS DP=46;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,6:2,5:11,1 +chr11 127306787 . C CT 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:5,5:15,1 +chr11 127497143 . A AT 0 PASS DP=37;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:2,6:6,1 +chr11 128565061 . A T 0 PASS DP=91;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,5:20,2:20,3 +chr11 129642545 . A ATG 0 PASS DP=62;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,13:15,10:7,3 +chr11 130057831 . A ATT 0 PASS DP=42;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:7,5:6,2 +chr11 132213730 . C CT 0 PASS DP=36;GPV=1;SPV=0.024674;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,8:3,1 +chr11 132716416 . A ATCTG 0 PASS DP=74;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,4:15,1:11,3 +chr11 132818615 . TA T 0 PASS DP=46;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:9,3:19,1 +chr11 132928109 . A G 0 PASS DP=89;GPV=1;SPV=1.6289e-11;SS=2;SSC=107;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:18,41:16,25:2,16 +chr11 133498490 . G A 0 PASS DP=115;GPV=1;SPV=9.3652e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:56,20:23,9:33,11 +chr11 134138202 . A G 0 PASS DP=37;GPV=1;SPV=0.35962;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr11 134773486 . G GAGAA 0 PASS DP=64;GPV=1;SPV=0.15576;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,5:22,3:15,2 +chr11 134813424 . G GTA 0 PASS DP=72;GPV=1;SPV=0.02026;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,8:15,3:22,5 +chr11 134827657 . ATATG A 0 PASS DP=85;GPV=1;SPV=0.082972;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:28,5:23,1 +chr11 135055865 . T TA 0 PASS DP=44;GPV=1;SPV=0.087834;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:15,5:10,2 +chr12 16088 . AG A 0 PASS DP=107;GPV=1;SPV=0.0090346;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:9,5:44,3 +chr12 16321 . T A 0 PASS DP=79;GPV=1;SPV=0.0043285;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:11,3:16,11 +chr12 423473 . TTTTGTGTTTTTTTTTGTTTTG T 0 PASS DP=33;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,4:0,0:3,4 +chr12 2850653 . TTTTTG T 0 PASS DP=55;GPV=1;SPV=0.0053439;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,8:10,5 +chr12 4620474 . C CA 0 PASS DP=37;GPV=1;SPV=0.0024499;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,10:3,9:3,1 +chr12 5375449 . G A 0 PASS DP=81;GPV=1;SPV=2.1217e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:15,14:9,8 +chr12 5636605 . TAC T 0 PASS DP=49;GPV=1;SPV=0.036735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:16,6:5,3 +chr12 5931794 . C T 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1 +chr12 7137793 . T A 0 PASS DP=73;GPV=1;SPV=0.0012364;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,10:9,5:13,5 +chr12 7197123 . A AT 0 PASS DP=54;GPV=1;SPV=0.03797;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,3:14,4 +chr12 7389960 . T TTA 0 PASS DP=43;GPV=1;SPV=0.00072464;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:6,3:0,6 +chr12 7475097 . C CAA 0 PASS DP=38;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,8:7,7:1,1 +chr12 7924946 . T A 0 PASS DP=81;GPV=1;SPV=0.033043;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:23,10:12,4 +chr12 9513023 . T C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:9,1:16,3 +chr12 9607313 . CTTCT C 0 PASS DP=41;GPV=1;SPV=0.27439;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:8,1:16,2 +chr12 9953386 . C T 0 PASS DP=20;GPV=1;SPV=0.0098833;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:1,7:2,2 +chr12 10239453 . C CCTTATT 0 PASS DP=48;GPV=1;SPV=0.030593;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:2,2:17,6 +chr12 10239466 . C T 0 PASS DP=51;GPV=1;SPV=0.025768;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,1:16,7 +chr12 10239469 . C CCTTATT 0 PASS DP=51;GPV=1;SPV=0.036024;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,8:3,1:16,7 +chr12 10603313 . CA C 0 PASS DP=32;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1 +chr12 10610576 . G A 0 PASS DP=33;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:6,2:4,2 +chr12 10674873 . CCGCG C 0 PASS DP=46;GPV=1;SPV=0.0013983;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:5,8:9,8 +chr12 11168404 . G GGA 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,2:0,2 +chr12 12081456 . C CA 0 PASS DP=36;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:9,7:4,1 +chr12 13457272 . T C 0 PASS DP=25;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,4:0,0:7,4 +chr12 14246866 . CT C 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr12 14586568 . A G 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3 +chr12 17413201 . C T 0 PASS DP=63;GPV=1;SPV=0.023193;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,8:8,6:4,2 +chr12 17535950 . C CTG 0 PASS DP=42;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr12 18163528 . A ATATATAT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr12 18521510 . C A 0 PASS DP=97;GPV=1;SPV=4.7205e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:34,23:11,15:23,8 +chr12 19400856 . A AT 0 PASS DP=86;GPV=1;SPV=0.043302;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:25,2:21,4 +chr12 19518218 . C CT 0 PASS DP=32;GPV=1;SPV=0.0070941;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:5,9:3,3 +chr12 20711810 . A G 0 PASS DP=77;GPV=1;SPV=3.8087e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:16,13:10,7 +chr12 21592165 . G A 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:25,4:4,2 +chr12 22955726 . T C 0 PASS DP=75;GPV=1;SPV=5.0013e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:15,13:7,8 +chr12 23412257 . T A 0 PASS DP=53;GPV=1;SPV=0.097509;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,5:13,3:6,2 +chr12 23500259 . T A 0 PASS DP=28;GPV=1;SPV=0.055341;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:7,1:1,5 +chr12 23577193 . T A 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:3,1:10,3 +chr12 23779814 . T TACAC 0 PASS DP=45;GPV=1;SPV=0.0021316;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,10:7,5:0,5 +chr12 24505872 . TGC T 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,3:21,1 +chr12 24948481 . G A 0 PASS DP=90;GPV=1;SPV=1.4368e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:18,17:7,7 +chr12 25077330 . T G 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1 +chr12 25488234 . C A 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr12 27874093 . C T 0 PASS DP=32;GPV=1;SPV=0.005778;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4 +chr12 28508610 . C A 0 PASS DP=80;GPV=1;SPV=6.0159e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:13,11:15,8 +chr12 30138549 . G GA 0 PASS DP=37;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,10:4,9:1,1 +chr12 30399886 . G GA 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:15,8:1,2 +chr12 30540173 . TTTGTTTG T 0 PASS DP=45;GPV=1;SPV=0.057946;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,1:12,6 +chr12 31031571 . ACT A 0 PASS DP=28;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:1,2:10,3 +chr12 31613788 . C T 0 PASS DP=95;GPV=1;SPV=0.025551;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:18,12:20,2 +chr12 31840469 . G GAA 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,4:2,1 +chr12 32005190 . ATATATG A 0 PASS DP=44;GPV=1;SPV=0.019067;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,4:9,2 +chr12 32117709 . T TACAC 0 PASS DP=44;GPV=1;SPV=0.0044074;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,4:8,5 +chr12 32142467 . T G 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr12 32300631 . AT A 0 PASS DP=34;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,3:4,1 +chr12 32673869 . AT A 0 PASS DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr12 32959639 . A C 0 PASS DP=76;GPV=1;SPV=7.8387e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,27:11,9:10,18 +chr12 34141907 . C CA 0 PASS DP=50;GPV=1;SPV=0.02099;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,7:9,4 +chr12 34779934 . A T 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,6:1,2 +chr12 34880972 . C A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr12 34885476 . T A 0 PASS DP=90;GPV=1;SPV=0.047933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:33,9:8,4 +chr12 35012841 . C T 0 PASS DP=153;GPV=1;SPV=0.025566;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:26,8:37,6 +chr12 35058634 . T A 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:29,4:0,0 +chr12 35324342 . C A 0 PASS DP=107;GPV=1;SPV=0.046114;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:17,5:34,5 +chr12 35332845 . A G 0 PASS DP=81;GPV=1;SPV=0.014996;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:12,5:18,7 +chr12 35337682 . C A 0 PASS DP=183;GPV=1;SPV=0.018943;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:78,22:39,11:39,11 +chr12 35473953 . T G 0 PASS DP=37;GPV=1;SPV=0.16089;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chr12 35473959 . CT C 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1 +chr12 35473968 . G C 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1 +chr12 35500729 . C A 0 PASS DP=60;GPV=1;SPV=0.026864;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:18,4:10,2 +chr12 35538803 . A C 0 PASS DP=58;GPV=1;SPV=0.04568;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,1:12,6 +chr12 35541957 . G C 0 PASS DP=89;GPV=1;SPV=0.029881;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:8,4:35,5 +chr12 35544547 . G A 0 PASS DP=44;GPV=1;SPV=0.2649;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4 +chr12 35689053 . T C 0 PASS DP=264;GPV=1;SPV=0.010005;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:120,15:95,8:25,7 +chr12 35735880 . A T 0 PASS DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:3,8:5,3 +chr12 35788169 . T C 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,4:2,0 +chr12 35858401 . A G 0 PASS DP=86;GPV=1;SPV=0.0079898;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:8,1:21,4 +chr12 35974352 . C T 0 PASS DP=71;GPV=1;SPV=0.053889;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:29,4:2,0 +chr12 36704968 . T A 0 PASS DP=47;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,5:11,3 +chr12 36704970 . A G 0 PASS DP=46;GPV=1;SPV=0.035006;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:13,6:11,3 +chr12 36806763 . T A 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:14,1:28,5 +chr12 36881419 . C T 0 PASS DP=72;GPV=1;SPV=0.025704;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:18,4:11,6 +chr12 36939834 . T A 0 PASS DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1 +chr12 37007145 . A G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 37058953 . T G 0 PASS DP=275;GPV=1;SPV=0.017715;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:101,19:51,14:50,5 +chr12 37240035 . C G 0 PASS DP=81;GPV=1;SPV=0.037769;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,3:14,3 +chr12 37814669 . G A 0 PASS DP=33;GPV=1;SPV=0.032805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:6,4:5,6 +chr12 39712017 . TATGTATATATAC T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2 +chr12 42514901 . CT C 0 PASS DP=76;GPV=1;SPV=0.029043;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:13,6:17,3 +chr12 43421284 . A C 0 PASS DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,4:15,1 +chr12 43654565 . C A 0 PASS DP=69;GPV=1;SPV=1.1921e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:11,8:9,12 +chr12 43958795 . C CT 0 PASS DP=65;GPV=1;SPV=0.026443;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:16,4:8,3 +chr12 44461624 . AAG A 0 PASS DP=55;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:16,3:10,1 +chr12 44587284 . A AAAAAAAAATATAT 0 PASS DP=25;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,2:4,2 +chr12 44644623 . T TAC 0 PASS DP=40;GPV=1;SPV=0.38255;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:19,1:8,3 +chr12 44953896 . A G 0 PASS DP=30;GPV=1;SPV=0.009553;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,3:5,4 +chr12 44971251 . C CA 0 PASS DP=30;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:8,4:6,1 +chr12 45022298 . G GTT 0 PASS DP=24;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr12 45080147 . TAC T 0 PASS DP=50;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:17,2:8,2 +chr12 45711984 . G GCCTCCAAGGTGCTAGGATTACAGGTGT 0 PASS DP=66;GPV=1;SPV=0.015407;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,13:7,6:18,7 +chr12 48332596 . A ACC 0 PASS DP=61;GPV=1;SPV=0.054417;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,7:9,1:22,6 +chr12 49376709 . AT A 0 PASS DP=39;GPV=1;SPV=0.031941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:10,5:2,1 +chr12 49606486 . G GACAC 0 PASS DP=64;GPV=1;SPV=0.055299;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,6:15,2:9,4 +chr12 49908462 . CAAA C 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,6:1,1 +chr12 51046344 . A C 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:7,1:4,4 +chr12 51197147 . G T 0 PASS DP=61;GPV=1;SPV=0.046819;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,1:12,8 +chr12 51400785 . T C 0 PASS DP=24;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:2,4:4,3 +chr12 52633627 . C A 0 PASS DP=63;GPV=1;SPV=0.020689;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,5:7,1:8,4 +chr12 52633628 . C T 0 PASS DP=64;GPV=1;SPV=0.013669;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,5:7,1:7,4 +chr12 53645358 . TA T 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr12 53763982 . T TTATTTTATTTTTATA 0 PASS DP=53;GPV=1;SPV=0.0031185;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:14,4:4,3 +chr12 53763983 . TGAGGGGG T 0 PASS DP=58;GPV=1;SPV=0.0016215;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:16,4:4,4 +chr12 53763992 . G T 0 PASS DP=54;GPV=1;SPV=0.0021337;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:15,4:4,4 +chr12 55052474 . TTTTCTTTCTTTCTTTC T 0 PASS DP=46;GPV=1;SPV=0.11117;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,8:4,4:17,4 +chr12 55100164 . C A 0 PASS DP=53;GPV=1;SPV=0.011216;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:12,5:10,9 +chr12 56001118 . CTT C 0 PASS DP=28;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:3,2:7,2 +chr12 56102806 . T TAAA 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:4,4:2,2 +chr12 56429497 . CTT C 0 PASS DP=32;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:9,3:4,3 +chr12 57003174 . G A 0 PASS DP=96;GPV=1;SPV=8.3573e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:19,10:14,5 +chr12 57423808 . TA T 0 PASS DP=24;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:3,6:1,2 +chr12 57722695 . A G 0 PASS DP=46;GPV=1;SPV=0.033061;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr12 58032649 . CT C 0 PASS DP=48;GPV=1;SPV=3.4248e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:7,13:6,2 +chr12 58452126 . CTATCTAGATATATATGATA C 0 PASS DP=49;GPV=1;SPV=0.03159;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,8:7,1 +chr12 61279630 . C CAA 0 PASS DP=24;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,5:1,3:1,2 +chr12 62286937 . C CAA 0 PASS DP=51;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,10:9,8:1,2 +chr12 63737080 . A C 0 PASS DP=84;GPV=1;SPV=0.02185;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:22,4:14,7 +chr12 63763961 . C A 0 PASS DP=38;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,4:4,4:0,0 +chr12 64203996 . T C 0 PASS DP=99;GPV=1;SPV=0.041043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:21,4:17,5 +chr12 64204010 . CATTA C 0 PASS DP=100;GPV=1;SPV=0.017109;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,6:17,5 +chr12 64380125 . A C 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,5:5,6 +chr12 64772237 . C CA 0 PASS DP=35;GPV=1;SPV=0.02948;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:9,6:4,1 +chr12 64947767 . C G 0 PASS DP=79;GPV=1;SPV=2.2099e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:10,6:15,12 +chr12 65422388 . GTATATATATATATATATATATATATATATA G 0 PASS DP=25;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:4,6:1,5 +chr12 65661709 . C CA 0 PASS DP=47;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:10,5:4,3 +chr12 65793271 . AT A 0 PASS DP=37;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,6:4,2 +chr12 66006908 . G GAA 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:22,2:6,2 +chr12 66006919 . A G 0 PASS DP=63;GPV=1;SPV=0.046186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:23,2:7,3 +chr12 66173784 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.04741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,8:7,4:6,4 +chr12 66730701 . C CAAAAA 0 PASS DP=40;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:11,4:7,1 +chr12 67756548 . C CGTGTGTGTGTGT 0 PASS DP=64;GPV=1;SPV=0.030517;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,10:21,8:12,2 +chr12 67873271 . G GT 0 PASS DP=24;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:5,2:2,2 +chr12 68101180 . AACACACACACAC A 0 PASS DP=40;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,10:9,6:1,4 +chr12 69522190 . T TTG 0 PASS DP=56;GPV=1;SPV=0.016175;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:13,5:9,5 +chr12 70126484 . C CAAA 0 PASS DP=50;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:17,8:3,1 +chr12 71055549 . G GT 0 PASS DP=29;GPV=1;SPV=0.0028686;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,8:1,2 +chr12 71248746 . CTTTTTTTTTTTTTTTT C 0 PASS DP=24;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:3,4:1,4 +chr12 72496234 . G T 0 PASS DP=83;GPV=1;SPV=3.5163e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:23,24:9,11:14,13 +chr12 72955677 . C T 0 PASS DP=57;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,4:6,1:14,3 +chr12 73557031 . T TAAA 0 PASS DP=51;GPV=1;SPV=0.015231;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,6:5,3 +chr12 74319765 . G C 0 PASS DP=71;GPV=1;SPV=0.00010787;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:11,8:16,7 +chr12 74494246 . G A 0 PASS DP=64;GPV=1;SPV=6.152e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:8,11:7,5 +chr12 75490195 . T TCA 0 PASS DP=38;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:5,2:1,9 +chr12 76661923 . GTGTGTGTATATATATA G 0 PASS DP=43;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:3,1:1,1 +chr12 76855015 . G T 0 PASS DP=53;GPV=1;SPV=0.16725;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:10,4:8,1:2,3 +chr12 77279015 . C CTGTGTGTGTGTGTGTG 0 PASS DP=56;GPV=1;SPV=0.025527;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,4:10,3 +chr12 77539752 . A C 0 PASS DP=80;GPV=1;SPV=3.8544e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:11,9:12,10 +chr12 77976665 . TC T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,1:5,4 +chr12 78651145 . C CCTCTCTCT 0 PASS DP=45;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,5:11,4:6,1 +chr12 79204778 . CTT C 0 PASS DP=23;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,2:2,3 +chr12 79253483 . G GTCTCTC 0 PASS DP=43;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:3,2:4,3 +chr12 79568594 . C CA 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1 +chr12 79841051 . T TA 0 PASS DP=47;GPV=1;SPV=0.035086;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,4:6,2 +chr12 81242708 . A G 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,3:3,4 +chr12 81412335 . CA C 0 PASS DP=34;GPV=1;SPV=0.0094835;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,8:2,1 +chr12 81927189 . TCATA T 0 PASS DP=61;GPV=1;SPV=0.042363;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:14,3:7,4 +chr12 81927217 . T TCATA 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr12 83014769 . C T 0 PASS DP=69;GPV=1;SPV=6.3199e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,20:7,8:9,12 +chr12 83895039 . T TA 0 PASS DP=63;GPV=1;SPV=0.036677;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,5:15,4:13,1 +chr12 84514468 . A T 0 PASS DP=66;GPV=1;SPV=1.2636e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:11,14:11,6 +chr12 85221285 . A G 0 PASS DP=82;GPV=1;SPV=4.8137e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,22:11,12:8,10 +chr12 85659476 . CT C 0 PASS DP=32;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:3,4:4,1 +chr12 86426352 . C T 0 PASS DP=81;GPV=1;SPV=6.7524e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:17,11:8,9 +chr12 86502770 . T A 0 PASS DP=37;GPV=1;SPV=0.036036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr12 86566317 . G A 0 PASS DP=47;GPV=1;SPV=0.002293;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4 +chr12 87893158 . G A 0 PASS DP=88;GPV=1;SPV=1.06e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:23,7:9,10 +chr12 88595703 . C CA 0 PASS DP=42;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:13,3:4,1 +chr12 88665001 . A G 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,2:17,2 +chr12 89887113 . G GTTTTT 0 PASS DP=24;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:4,7:1,1 +chr12 91308224 . C CA 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:15,9:9,3 +chr12 91467146 . C CA 0 PASS DP=53;GPV=1;SPV=0.0011679;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:9,6:6,10 +chr12 92516137 . C CTGTGTG 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1 +chr12 92921866 . C CA 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:10,8:0,1 +chr12 92995012 . T TTG 0 PASS DP=36;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,14:8,11:2,3 +chr12 93291515 . G A 0 PASS DP=67;GPV=1;SPV=0.020137;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,9:15,1 +chr12 93514299 . T C 0 PASS DP=64;GPV=1;SPV=0.044908;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,6:16,3:16,3 +chr12 94516083 . G A 0 PASS DP=60;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,5:7,2:6,3 +chr12 94904262 . C T 0 PASS DP=52;GPV=1;SPV=4.3844e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:8,11:7,3 +chr12 95053681 . GT G 0 PASS DP=50;GPV=1;SPV=0.014414;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:14,5:6,6 +chr12 95599688 . TTA T 0 PASS DP=48;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,4:9,2:6,2 +chr12 95702858 . G T 0 PASS DP=47;GPV=1;SPV=0.030583;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:2,3:9,4 +chr12 96190492 . C CT 0 PASS DP=24;GPV=1;SPV=0.00070028;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,5:1,4:0,1 +chr12 96466181 . A G 0 PASS DP=81;GPV=1;SPV=3.3044e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:9,5:22,12 +chr12 96978485 . CTTTTTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,3:2,4 +chr12 97988353 . A G 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,2:1,2 +chr12 98334636 . T A 0 PASS DP=78;GPV=1;SPV=7.2341e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:12,7:6,10 +chr12 99532748 . C A 0 PASS DP=73;GPV=1;SPV=1.2103e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:8,13:11,8 +chr12 100012716 . G A 0 PASS DP=75;GPV=1;SPV=1.1661e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,8:14,5 +chr12 100385116 . C CTG 0 PASS DP=61;GPV=1;SPV=0.0052219;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:9,9:12,5 +chr12 100475124 . C CCTATCTATCTAT 0 PASS DP=61;GPV=1;SPV=0.0094816;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,14:16,6:10,8 +chr12 100483066 . C T 0 PASS DP=80;GPV=1;SPV=3.4647e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:19,7:10,8 +chr12 101040124 . G A 0 PASS DP=87;GPV=1;SPV=1.8133e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:25,28:14,13:11,15 +chr12 101193291 . A C 0 PASS DP=64;GPV=1;SPV=0.00031521;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:15,8:10,6 +chr12 101259836 . G A 0 PASS DP=56;GPV=1;SPV=2.0246e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:8,13:9,7 +chr12 101259878 . C CA 0 PASS DP=36;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,5:11,4:4,1 +chr12 102036362 . C CA 0 PASS DP=41;GPV=1;SPV=0.020315;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:9,8:4,2 +chr12 102228465 . T C 0 PASS DP=57;GPV=1;SPV=9.3791e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:11,25:5,8:6,17 +chr12 103404920 . G A 0 PASS DP=90;GPV=1;SPV=1.6819e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:37,22:15,12:22,10 +chr12 103775010 . C CA 0 PASS DP=58;GPV=1;SPV=0.013346;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,13:14,10:5,3 +chr12 104161217 . A AT 0 PASS DP=53;GPV=1;SPV=0.0075114;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,4:11,7 +chr12 104637392 . T C 0 PASS DP=27;GPV=1;SPV=0.0010679;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:6,11:0,1 +chr12 105619178 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.0091688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,8:2,7:1,1 +chr12 105631649 . A C 0 PASS DP=44;GPV=1;SPV=0.0066111;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,6:4,3 +chr12 105865663 . CA C 0 PASS DP=57;GPV=1;SPV=0.017221;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1 +chr12 106477891 . CTTTT C 0 PASS DP=36;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:7,4:3,2 +chr12 107482985 . T C 0 PASS DP=36;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:3,1:4,1 +chr12 107643752 . C CTTTTT 0 PASS DP=35;GPV=1;SPV=0.055718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2 +chr12 108490233 . T TA 0 PASS DP=34;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:3,4:1,2 +chr12 108757194 . TACACAC T 0 PASS DP=42;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:9,5:0,1 +chr12 109349658 . CA C 0 PASS DP=36;GPV=1;SPV=0.015123;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,9:6,3 +chr12 109354618 . T TTAAAAAAAAAA 0 PASS DP=62;GPV=1;SPV=0.033228;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,6:13,4:15,2 +chr12 109427316 . CA C 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,6:5,3 +chr12 109443214 . GTA G 0 PASS DP=59;GPV=1;SPV=0.115;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,4:19,1 +chr12 109443262 . GTA G 0 PASS DP=63;GPV=1;SPV=0.048762;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:18,5:17,2 +chr12 110595211 . C CA 0 PASS DP=44;GPV=1;SPV=0.0089009;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:11,4:4,2 +chr12 112713051 . CCTTCTTCTTCTTCTT C 0 PASS DP=21;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:0,3:5,1 +chr12 112739417 . G A 0 PASS DP=73;GPV=1;SPV=6.4011e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:15,16:10,5 +chr12 113491777 . G A 0 PASS DP=90;GPV=1;SPV=1.0232e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,23:13,9:11,14 +chr12 114357023 . G C 0 PASS DP=87;GPV=1;SPV=0.0082398;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:15,3:20,6 +chr12 114576263 . G A 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:1,0:18,4 +chr12 114781830 . T TAA 0 PASS DP=45;GPV=1;SPV=0.0044074;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:12,7:5,2 +chr12 115927160 . CA C 0 PASS DP=28;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,5:2,1 +chr12 117011127 . C CTTTTTTT 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,3:8,4 +chr12 117088680 . C CAAAA 0 PASS DP=44;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,7:10,4:6,3 +chr12 117215869 . CT C 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1 +chr12 117361858 . C T 0 PASS DP=56;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,3:2,2:4,1 +chr12 117893017 . AT A 0 PASS DP=66;GPV=1;SPV=4.5381e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:9,8:12,5 +chr12 117995993 . CA C 0 PASS DP=30;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,7:4,2 +chr12 118204255 . G GA 0 PASS DP=53;GPV=1;SPV=0.00054483;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:13,9:5,3 +chr12 118646576 . G GT 0 PASS DP=33;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,6:10,4:1,2 +chr12 119075497 . G C 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,2:17,2 +chr12 120528211 . T A 0 PASS DP=50;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,2:3,1:1,1 +chr12 120868474 . TTG T 0 PASS DP=64;GPV=1;SPV=0.05717;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:16,1:16,4 +chr12 121644589 . C CT 0 PASS DP=47;GPV=1;SPV=0.0058024;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,8:11,2 +chr12 124901888 . C CA 0 PASS DP=50;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:9,12:6,10:3,2 +chr12 127042467 . C G 0 PASS DP=85;GPV=1;SPV=4.2186e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,24:12,12:9,12 +chr12 127089069 . A T 0 PASS DP=61;GPV=1;SPV=0.037462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:13,4:16,6 +chr12 127225612 . TTTTC T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2 +chr12 127475365 . A ATTTT 0 PASS DP=37;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,8:2,5:2,3 +chr12 127590198 . T C 0 PASS DP=71;GPV=1;SPV=2.2826e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:8,3:12,13 +chr12 127697209 . GGTGATAGTGGTGATGATGGCA G 0 PASS DP=79;GPV=1;SPV=0.042786;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:22,3:13,4 +chr12 127736409 . C CTTTCT 0 PASS DP=22;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,3:3,2 +chr12 128060616 . G C 0 PASS DP=59;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:3,1:4,1 +chr12 128278750 . A ATG 0 PASS DP=50;GPV=1;SPV=0.036024;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:14,5:5,3 +chr12 128874102 . C T 0 PASS DP=37;GPV=1;SPV=0.15775;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,5:4,3:11,2 +chr12 129643513 . G T 0 PASS DP=72;GPV=1;SPV=2.0437e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,8:14,6 +chr12 130155274 . G A 0 PASS DP=49;GPV=1;SPV=0.037408;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,4:10,7 +chr12 130897372 . G GACACACACACACAC 0 PASS DP=38;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:5,6:2,2 +chr12 131259917 . G C 0 PASS DP=43;GPV=1;SPV=0.034956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,3:4,2 +chr12 131925532 . CT C 0 PASS DP=23;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,2:2,4 +chr12 132243194 . A C 0 PASS DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:20,2:10,2 +chr12 132321203 . A G 0 PASS DP=78;GPV=1;SPV=0.0069983;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,7:7,4:11,3 +chr12 132692569 . T TA 0 PASS DP=68;GPV=1;SPV=0.039528;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:22,2:15,5 +chr12 132742222 . A C 0 PASS DP=69;GPV=1;SPV=0.033476;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:13,8:9,5:4,3 +chr13 18174876 . T C 0 PASS DP=280;GPV=1;SPV=0.025123;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:144,16:72,6:72,10 +chr13 18194860 . C T 0 PASS DP=163;GPV=1;SPV=0.027244;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:35,12:40,5 +chr13 18320625 . A T 0 PASS DP=188;GPV=1;SPV=0.0020701;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:81,25:42,14:39,11 +chr13 19311248 . C CAAAA 0 PASS DP=31;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:2,8:3,1 +chr13 19779663 . G A 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,2:2,2 +chr13 19970600 . CA C 0 PASS DP=29;GPV=1;SPV=0.009224;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,7:3,2 +chr13 20063841 . T A 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,2:6,3 +chr13 20218615 . C CCT 0 PASS DP=44;GPV=1;SPV=0.01905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,8:6,1:10,7 +chr13 20394727 . C T 0 PASS DP=120;GPV=1;SPV=1.0869e-10;SS=2;SSC=99;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:33,28:18,16:15,12 +chr13 20958455 . C CA 0 PASS DP=23;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:2,7:2,3 +chr13 21081796 . C CA 0 PASS DP=35;GPV=1;SPV=0.067367;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:10,4:6,2 +chr13 21136300 . T G 0 PASS DP=76;GPV=1;SPV=9.5177e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:14,6:11,10 +chr13 21377451 . G T 0 PASS DP=105;GPV=1;SPV=0.0017334;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:52,20:27,3:25,17 +chr13 21946632 . C CTT 0 PASS DP=52;GPV=1;SPV=0.03366;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:11,8:13,5 +chr13 22314271 . TTTTTTG T 0 PASS DP=42;GPV=1;SPV=0.0090872;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,4:7,3 +chr13 22562413 . G A 0 PASS DP=68;GPV=1;SPV=8.7616e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,9:10,7 +chr13 22570106 . C T 0 PASS DP=56;GPV=1;SPV=0.00040437;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:7,8:13,4 +chr13 23065294 . C T 0 PASS DP=80;GPV=1;SPV=2.701e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:17,10:13,7 +chr13 23204617 . T C 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr13 23387468 . A G 0 PASS DP=63;GPV=1;SPV=0.10662;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:15,2:21,3 +chr13 23774784 . CTTT C 0 PASS DP=24;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:7,3:1,1 +chr13 23775127 . G A 0 PASS DP=57;GPV=1;SPV=0.0096412;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:7,5:14,4 +chr13 24163332 . G A 0 PASS DP=77;GPV=1;SPV=2.6678e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:23,25:14,9:9,16 +chr13 24424673 . C CTTTT 0 PASS DP=44;GPV=1;SPV=0.013499;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,8:8,4 +chr13 24472891 . GTT G 0 PASS DP=43;GPV=1;SPV=0.00037946;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,14:10,11:3,3 +chr13 24586838 . C G 0 PASS DP=74;GPV=1;SPV=0.047734;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:25,6:17,1 +chr13 25004051 . T C 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,3:8,1 +chr13 25081463 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:9,2:2,3 +chr13 25100046 . GTTTTT G 0 PASS DP=30;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:8,5:2,4 +chr13 26901899 . C CA 0 PASS DP=49;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:6,6:14,3 +chr13 27751173 . C CGAGAGA 0 PASS DP=46;GPV=1;SPV=0.055194;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:11,4:9,1 +chr13 27990755 . A G 0 PASS DP=51;GPV=1;SPV=0.10815;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:21,1:9,5 +chr13 29286668 . G GTCTATCTATCTATCTATCTATCTA 0 PASS DP=67;GPV=1;SPV=0.018147;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,10:16,4:12,6 +chr13 30146490 . TAAAAAAAAAAAAAAAAAAAAAAA T 0 PASS DP=31;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:4,5:5,3 +chr13 30688026 . A C 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,2:1,1:1,1 +chr13 30764285 . G A 0 PASS DP=98;GPV=1;SPV=1.8308e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:34,26:12,18:22,8 +chr13 30842612 . T G 0 PASS DP=32;GPV=1;SPV=0.24625;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,3:13,1 +chr13 30966432 . C CT 0 PASS DP=30;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,9:4,6:1,3 +chr13 31685958 . C CAAAA 0 PASS DP=36;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:7,5:8,1 +chr13 32523390 . C CA 0 PASS DP=59;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:9,8:13,7 +chr13 32799312 . CA C 0 PASS DP=27;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:2,6:2,1 +chr13 33296436 . G A 0 PASS DP=86;GPV=1;SPV=0.031483;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:21,7:12,1 +chr13 34713680 . C CT 0 PASS DP=44;GPV=1;SPV=0.0044505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:8,5:5,1 +chr13 35853771 . C T 0 PASS DP=69;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:5,10:12,7 +chr13 36010051 . C G 0 PASS DP=50;GPV=1;SPV=0.00071247;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,6:7,6 +chr13 39497293 . C A 0 PASS DP=77;GPV=1;SPV=3.3844e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:8,13:15,10 +chr13 39576811 . T A 0 PASS DP=81;GPV=1;SPV=0.023921;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,5:6,2:10,3 +chr13 40201734 . T C 0 PASS DP=22;GPV=1;SPV=0.010062;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,5:2,2 +chr13 40714439 . T C 0 PASS DP=87;GPV=1;SPV=0.031468;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:21,1:23,5 +chr13 41758392 . ACGCTAG A 0 PASS DP=31;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1 +chr13 42171828 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:4,7:0,1 +chr13 45958652 . T C 0 PASS DP=43;GPV=1;SPV=0.34103;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,4:6,3:11,1 +chr13 46515602 . A G 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr13 48080396 . C CA 0 PASS DP=41;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,8:7,2 +chr13 48110844 . GTATATATATATATATATATATATATATATATATATA G 0 PASS DP=30;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,10:1,5:2,5 +chr13 48110884 . A G 0 PASS DP=26;GPV=1;SPV=0.00059227;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:3,13:0,6:3,7 +chr13 50316876 . G GATAAATAAATAAATAAATAA 0 PASS DP=63;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,11:10,5:18,6 +chr13 50743178 . C A 0 PASS DP=64;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,7:7,4:13,3 +chr13 51825636 . T G 0 PASS DP=83;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:6,3:4,2:2,1 +chr13 53374580 . G A 0 PASS DP=77;GPV=1;SPV=6.5235e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:11,10:12,10 +chr13 53824645 . G A 0 PASS DP=66;GPV=1;SPV=5.7991e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:10,14:8,9 +chr13 54392755 . T TAA 0 PASS DP=63;GPV=1;SPV=0.0082887;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,4:15,6 +chr13 54963344 . T A 0 PASS DP=58;GPV=1;SPV=0.064151;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,6:9,4:10,2 +chr13 55338258 . A G 0 PASS DP=45;GPV=1;SPV=0.037194;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:11,5:5,2 +chr13 55388469 . AAG A 0 PASS DP=63;GPV=1;SPV=0.14744;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1 +chr13 56933829 . C G 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,4:5,4 +chr13 57959564 . T A 0 PASS DP=82;GPV=1;SPV=1.0555e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:10,7:16,7 +chr13 58465615 . C T 0 PASS DP=88;GPV=1;SPV=9.0336e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:14,12:12,10 +chr13 58857633 . C G 0 PASS DP=76;GPV=1;SPV=0.0011442;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,4:13,5 +chr13 59663665 . G GCACACACA 0 PASS DP=44;GPV=1;SPV=0.024807;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,7:5,2 +chr13 60776126 . T TTTTATTTATTTA 0 PASS DP=59;GPV=1;SPV=0.015078;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:17,7:7,3 +chr13 61260559 . T TAGAG 0 PASS DP=38;GPV=1;SPV=0.10927;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:8,3:7,4 +chr13 61864731 . C T 0 PASS DP=58;GPV=1;SPV=0.0030535;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,3:9,5 +chr13 61864743 . A ATTTACTTAATGAGAAATTAACT 0 PASS DP=63;GPV=1;SPV=0.039588;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,3:14,2 +chr13 63445366 . ATATAGATGAG A 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,1:5,3 +chr13 63534837 . CTT C 0 PASS DP=27;GPV=1;SPV=0.38182;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:3,1:2,1 +chr13 64354724 . C CA 0 PASS DP=39;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:12,7:1,1 +chr13 64633674 . T A 0 PASS DP=46;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,4:9,3:2,1 +chr13 64922205 . C CAA 0 PASS DP=35;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:10,7:1,1 +chr13 66873940 . C CT 0 PASS DP=26;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,1:3,5 +chr13 67557953 . A T 0 PASS DP=75;GPV=1;SPV=1.2509e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:12,9:12,15 +chr13 68070422 . G GAGAGAAGAA 0 PASS DP=59;GPV=1;SPV=0.0054674;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,10:7,3:4,7 +chr13 69542750 . A AT 0 PASS DP=37;GPV=1;SPV=0.097509;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2 +chr13 71291325 . G A 0 PASS DP=46;GPV=1;SPV=0.047958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,5:9,1 +chr13 71590875 . C CT 0 PASS DP=24;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,3:6,1 +chr13 72945581 . G T 0 PASS DP=84;GPV=1;SPV=3.5309e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:10,10:10,8 +chr13 72966941 . C CT 0 PASS DP=40;GPV=1;SPV=0.0010086;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:2,7:8,5 +chr13 73934950 . ATTAT A 0 PASS DP=60;GPV=1;SPV=0.0056474;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:14,7:8,3 +chr13 74814335 . C T 0 PASS DP=84;GPV=1;SPV=2.9228e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:18,13:8,9 +chr13 75142489 . C A 0 PASS DP=45;GPV=1;SPV=0.020376;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:6,3:5,4 +chr13 75157414 . A T 0 PASS DP=78;GPV=1;SPV=6.9612e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:8,15:12,5 +chr13 76318655 . C G 0 PASS DP=29;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,4:5,2:5,2 +chr13 76318660 . A ATG 0 PASS DP=32;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:5,2:5,2 +chr13 76457792 . A C 0 PASS DP=53;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,4:3,3:13,1 +chr13 82047149 . C A 0 PASS DP=57;GPV=1;SPV=0.0001126;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:5,11:9,8 +chr13 82082276 . G C 0 PASS DP=80;GPV=1;SPV=3.8837e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:9,15:12,7 +chr13 82084148 . G GGT 0 PASS DP=49;GPV=1;SPV=0.015511;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,8:15,4:7,4 +chr13 82392688 . TAAAAAAAAA T 0 PASS DP=43;GPV=1;SPV=0.010683;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:8,7:6,4 +chr13 85510720 . G A 0 PASS DP=83;GPV=1;SPV=4.5153e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:9,10:20,9 +chr13 87433344 . CACTTGAAACTAACAATATTTTAAAAG C 0 PASS DP=38;GPV=1;SPV=0.063556;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,4:10,4 +chr13 87860077 . A C 0 PASS DP=56;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:7,2:4,1:3,1 +chr13 89038023 . G GTA 0 PASS DP=39;GPV=1;SPV=0.17207;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,5:10,1 +chr13 90271648 . T A 0 PASS DP=58;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,7:0,1:1,6 +chr13 90314350 . CACAA C 0 PASS DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:10,2:15,2 +chr13 90314366 . TAC T 0 PASS DP=41;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:5,3:16,3 +chr13 90314394 . C CACT 0 PASS DP=46;GPV=1;SPV=0.12337;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,5:10,4:14,1 +chr13 90314398 . CT C 0 PASS DP=40;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:8,5:9,2 +chr13 90535531 . GT G 0 PASS DP=47;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,12:6,8:6,4 +chr13 93102644 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.069764;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:14,7:7,1 +chr13 93719694 . C A 0 PASS DP=57;GPV=1;SPV=2.9137e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:7,7:8,12 +chr13 93979319 . T G 0 PASS DP=45;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:2,4:14,3 +chr13 95350698 . G A 0 PASS DP=59;GPV=1;SPV=0.04524;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,8:10,3 +chr13 96242577 . T A 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,1:16,3 +chr13 96866641 . T A 0 PASS DP=45;GPV=1;SPV=0.042556;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,7:8,3:4,4 +chr13 96943450 . CT C 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,1:3,4 +chr13 97745962 . TAA T 0 PASS DP=65;GPV=1;SPV=9.1959e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:7,21:4,10:3,11 +chr13 98372081 . C CT 0 PASS DP=31;GPV=1;SPV=0.013375;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:9,8:1,1 +chr13 98488160 . G GACAC 0 PASS DP=37;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:3,7:3,1 +chr13 100067016 . G GTATA 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,3:11,1 +chr13 100348890 . TTTCC T 0 PASS DP=44;GPV=1;SPV=0.1043;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,2:14,4 +chr13 100524374 . C CGTGTGTGTGT 0 PASS DP=64;GPV=1;SPV=0.01504;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:5,3:18,7 +chr13 100609682 . C T 0 PASS DP=61;GPV=1;SPV=0.058759;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:13,4:20,2 +chr13 100812765 . G A 0 PASS DP=88;GPV=1;SPV=6.3369e-11;SS=2;SSC=101;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:19,30:12,17:7,13 +chr13 101256765 . C CT 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,8:7,1 +chr13 104361264 . C CT 0 PASS DP=60;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,12:9,9:5,3 +chr13 104467288 . G A 0 PASS DP=77;GPV=1;SPV=1.1402e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:14,9:11,6 +chr13 104934498 . C A 0 PASS DP=83;GPV=1;SPV=4.489e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:15,14:8,9 +chr13 105286843 . C CTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,3:7,8 +chr13 106169412 . T TAAA 0 PASS DP=37;GPV=1;SPV=0.0007996;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,14:5,9:2,5 +chr13 106281922 . AAAT A 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,1:14,3 +chr13 106395375 . G A 0 PASS DP=84;GPV=1;SPV=1.5832e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:14,11:11,11 +chr13 109392632 . G T 0 PASS DP=38;GPV=1;SPV=0.23992;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:8,2:13,1 +chr13 109670435 . G GT 0 PASS DP=73;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:2,4:1,2:1,2 +chr13 109765589 . A C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4 +chr13 110481218 . A T 0 PASS DP=35;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:5,4:13,1 +chr13 110516896 . C CT 0 PASS DP=35;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:3,4:13,2 +chr13 110603307 . C CA 0 PASS DP=52;GPV=1;SPV=0.00017215;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,10:4,8:4,2 +chr13 111680082 . AAG A 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:0,4:7,8 +chr13 112279249 . G A 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:15,1:4,3 +chr13 112292665 . A G 0 PASS DP=67;GPV=1;SPV=0.082314;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:23,4:19,4 +chr13 112300579 . C T 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chr13 112863264 . A C 0 PASS DP=40;GPV=1;SPV=0.028868;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,6:9,2 +chr13 113512746 . A G 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2 +chr13 113600427 . T C 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,3:7,2 +chr13 113640819 . T C 0 PASS DP=71;GPV=1;SPV=0.00023524;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:18,10:12,8 +chr13 114028232 . T C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr14 16032010 . T C 0 PASS DP=25;GPV=1;SPV=0.026087;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr14 18254190 . C T 0 PASS DP=53;GPV=1;SPV=0.048825;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,5:10,5 +chr14 18403011 . C A 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,3:4,2 +chr14 18631061 . T C 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,3:10,1 +chr14 18679857 . TA T 0 PASS DP=98;GPV=1;SPV=0.027603;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:24,9:17,6 +chr14 18951065 . G T 0 PASS DP=48;GPV=1;SPV=0.0054626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:5,3:12,9 +chr14 18953821 . A G 0 PASS DP=100;GPV=1;SPV=0.016516;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:20,2:30,5 +chr14 19115443 . A C 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:17,4:1,1 +chr14 19271533 . G A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr14 19339980 . T TC 0 PASS DP=55;GPV=1;SPV=0.028508;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:12,3:13,3 +chr14 19340017 . G A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,3:2,1 +chr14 19397645 . T A 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,1:14,4 +chr14 19475796 . C A 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:3,2:11,2 +chr14 19480483 . G A 0 PASS DP=85;GPV=1;SPV=0.047268;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:26,8:11,4 +chr14 19489756 . T G 0 PASS DP=145;GPV=1;SPV=0.03269;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:71,21:28,9:43,12 +chr14 19708740 . T C 0 PASS DP=73;GPV=1;SPV=0.14106;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:31,4:14,1 +chr14 19833665 . C T 0 PASS DP=82;GPV=1;SPV=6.6042e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:12,6:13,14 +chr14 20506338 . A T 0 PASS DP=30;GPV=1;SPV=0.0070965;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:1,3:6,11 +chr14 21460585 . C CAAA 0 PASS DP=28;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,7:3,2 +chr14 22782464 . A T 0 PASS DP=76;GPV=1;SPV=0.045689;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:22,3:21,4 +chr14 23016888 . AT A 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,3:14,1 +chr14 23129127 . G A 0 PASS DP=84;GPV=1;SPV=1.0826e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:13,10:13,8 +chr14 23779038 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:1,1:1,7 +chr14 24004269 . T TA 0 PASS DP=42;GPV=1;SPV=0.0048364;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:12,5:0,1 +chr14 25125164 . CA C 0 PASS DP=33;GPV=1;SPV=0.059881;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:13,5:2,1 +chr14 26941188 . C T 0 PASS DP=73;GPV=1;SPV=1.5607e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,23:10,12:7,11 +chr14 27112425 . C T 0 PASS DP=69;GPV=1;SPV=3.0511e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:9,12:3,7 +chr14 28392771 . C CT 0 PASS DP=72;GPV=1;SPV=1.3087e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,6:10,7 +chr14 28562095 . G A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3 +chr14 29466224 . TAAATATATAATATATAA T 0 PASS DP=42;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,5:6,3 +chr14 30434626 . AT A 0 PASS DP=30;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:5,2:5,2 +chr14 32056469 . CT C 0 PASS DP=41;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,12:1,3:10,9 +chr14 33541098 . T G 0 PASS DP=65;GPV=1;SPV=0.038751;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:20,5:15,2 +chr14 34371073 . A T 0 PASS DP=46;GPV=1;SPV=0.047958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,5:4,1 +chr14 34784368 . A C 0 PASS DP=37;GPV=1;SPV=0.037926;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,5:0,2:4,3 +chr14 34890002 . C CA 0 PASS DP=43;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,10:6,8:10,2 +chr14 35259993 . G GT 0 PASS DP=40;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,4:5,5 +chr14 35977406 . C T 0 PASS DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3 +chr14 37181064 . TTTTA T 0 PASS DP=62;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:9,8:10,3 +chr14 37200892 . GTGTGTGTA G 0 PASS DP=44;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,6:8,3 +chr14 37433616 . C T 0 PASS DP=67;GPV=1;SPV=2.7351e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:12,21:5,14:7,7 +chr14 38953429 . A AGTGTGTGTGTGTGT 0 PASS DP=26;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:4,5:2,1 +chr14 38989050 . AAAAGAAAG A 0 PASS DP=61;GPV=1;SPV=0.0023054;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,9:8,3:8,6 +chr14 40464959 . G A 0 PASS DP=86;GPV=1;SPV=2.4234e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:14,12:9,10 +chr14 41051835 . C CATTATTATTATTATTATTATT 0 PASS DP=41;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,5:3,5 +chr14 41494216 . C T 0 PASS DP=78;GPV=1;SPV=5.8335e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,23:9,14:12,9 +chr14 42157721 . TA T 0 PASS DP=40;GPV=1;SPV=0.070365;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:6,3:14,4 +chr14 44684892 . C T 0 PASS DP=49;GPV=1;SPV=0.0049228;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:16,5:3,3 +chr14 45757259 . G GGCTTGCTTGCTTGCTTGCTT 0 PASS DP=62;GPV=1;SPV=0.0015921;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,12:8,4:12,8 +chr14 46266489 . CAAACA C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,1:7,3 +chr14 46275141 . TAAAAAAAAAA T 0 PASS DP=32;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:6,3:6,1 +chr14 47361207 . C CTA 0 PASS DP=56;GPV=1;SPV=0.0018885;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,7:9,2 +chr14 49799207 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:11,6:4,1 +chr14 50239185 . AAAG A 0 PASS DP=41;GPV=1;SPV=0.0023885;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:7,8:4,3 +chr14 50585894 . C A 0 PASS DP=74;GPV=1;SPV=1.4733e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:10,16:17,5 +chr14 51068346 . CAAA C 0 PASS DP=96;GPV=1;SPV=0.035023;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:27,4:23,2 +chr14 51247352 . A AT 0 PASS DP=36;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:4,5:2,2 +chr14 51646318 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,4:3,1 +chr14 52107305 . CTT C 0 PASS DP=27;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:2,2:5,2 +chr14 52739632 . CT C 0 PASS DP=20;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1 +chr14 52762858 . TTTTC T 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1 +chr14 52779724 . T TAA 0 PASS DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:1,5:4,1 +chr14 54208438 . G A 0 PASS DP=70;GPV=1;SPV=0.00064075;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,6:16,4 +chr14 55099607 . G A 0 PASS DP=42;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,9:6,2:5,7 +chr14 55990192 . A G 0 PASS DP=41;GPV=1;SPV=0.069424;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,3:9,4 +chr14 56102549 . C CA 0 PASS DP=29;GPV=1;SPV=0.004119;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:4,6:3,2 +chr14 56546913 . AT A 0 PASS DP=76;GPV=1;SPV=9.0495e-07;SS=2;SSC=60;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:8,6:14,12 +chr14 56883287 . C CT 0 PASS DP=24;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:4,3:3,1 +chr14 57381058 . A AGAAG 0 PASS DP=55;GPV=1;SPV=0.070174;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:10,4:17,1 +chr14 57381064 . A G 0 PASS DP=53;GPV=1;SPV=0.028751;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,9:9,7:9,2 +chr14 58743217 . A T 0 PASS DP=77;GPV=1;SPV=0.023494;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:18,4:15,4 +chr14 58954563 . T C 0 PASS DP=97;GPV=1;SPV=0.00014931;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:46,20:25,12:21,8 +chr14 59289767 . G GATATATATATATATATATAT 0 PASS DP=41;GPV=1;SPV=0.018966;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:7,3:4,3 +chr14 59575505 . CTT C 0 PASS DP=43;GPV=1;SPV=0.00096036;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,12:9,6:0,6 +chr14 59749420 . C CTA 0 PASS DP=21;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:1,1:3,1 +chr14 60784179 . A ATTTTT 0 PASS DP=27;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,9:2,4:4,5 +chr14 61106104 . T A 0 PASS DP=63;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:0,6:0,3:0,3 +chr14 61607114 . G GGTGTGTGCGT 0 PASS DP=57;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,10:13,4:7,6 +chr14 62799573 . CA C 0 PASS DP=23;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,4:2,2 +chr14 63074461 . TATGTCA T 0 PASS DP=78;GPV=1;SPV=3.7204e-08;SS=2;SSC=74;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:13,6:4,11 +chr14 64716465 . CA C 0 PASS DP=49;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,6:3,3:3,3 +chr14 65436630 . A C 0 PASS DP=64;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:5,2:1,1:4,1 +chr14 67179340 . C T 0 PASS DP=86;GPV=1;SPV=3.0979e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:22,27:11,13:11,14 +chr14 67323261 . G A 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:20,3:11,1 +chr14 67389775 . C CT 0 PASS DP=56;GPV=1;SPV=0.00060405;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:12,4:4,4 +chr14 67655028 . C CA 0 PASS DP=35;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:6,9:3,1 +chr14 68388076 . G A 0 PASS DP=62;GPV=1;SPV=0.093861;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:21,1:10,3 +chr14 68635709 . C A 0 PASS DP=72;GPV=1;SPV=3.2589e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,8:14,5 +chr14 70659134 . A G 0 PASS DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:15,5:16,2 +chr14 71708015 . GT G 0 PASS DP=28;GPV=1;SPV=0.016908;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,5:5,1 +chr14 71845111 . T G 0 PASS DP=39;GPV=1;SPV=0.0051416;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,2:8,8 +chr14 71845125 . A T 0 PASS DP=29;GPV=1;SPV=0.026054;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,1:6,5 +chr14 71899692 . C A 0 PASS DP=70;GPV=1;SPV=1.637e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,13:9,3 +chr14 73258618 . T A 0 PASS DP=40;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:14,1:4,3 +chr14 73395037 . T TTG 0 PASS DP=30;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:4,5:0,2 +chr14 73401563 . AT A 0 PASS DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,4:9,3 +chr14 73834946 . A AGT 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,3:3,3 +chr14 73844185 . A C 0 PASS DP=50;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,4:10,2:8,2 +chr14 74335740 . A AT 0 PASS DP=52;GPV=1;SPV=0.034367;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,1:8,4 +chr14 76678199 . G A 0 PASS DP=80;GPV=1;SPV=6.0264e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:13,14:9,9 +chr14 77501593 . C CTT 0 PASS DP=27;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1 +chr14 77642878 . ATAAATGTGTGT A 0 PASS DP=45;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,10:9,5:1,5 +chr14 77648612 . GAAAGGAAAGAAGA G 0 PASS DP=51;GPV=1;SPV=0.024217;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3 +chr14 77657742 . CT C 0 PASS DP=24;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,4:4,1 +chr14 78073537 . C CT 0 PASS DP=42;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,3:8,4 +chr14 79284343 . CATATAT C 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:6,3:0,2 +chr14 79601040 . C CT 0 PASS DP=29;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,11:1,9:7,2 +chr14 79921819 . T TTC 0 PASS DP=51;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,0:0,2 +chr14 81807138 . TCAC T 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:5,6:15,2 +chr14 82885965 . C CAA 0 PASS DP=39;GPV=1;SPV=0.031249;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:14,7:2,1 +chr14 83298937 . G GT 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,4:8,3 +chr14 83759808 . C A 0 PASS DP=70;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:11,8:7,10 +chr14 84790356 . C T 0 PASS DP=38;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,1:0,1 +chr14 85109882 . ATACG A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,1:12,3 +chr14 85109901 . C CG 0 PASS DP=59;GPV=1;SPV=0.1672;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,4:17,1:16,3 +chr14 85504440 . CA C 0 PASS DP=25;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,12:2,10:3,2 +chr14 85598916 . G GTT 0 PASS DP=49;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:14,8:2,2 +chr14 87349200 . GTTTT G 0 PASS DP=31;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:8,4:8,1 +chr14 88205542 . C CT 0 PASS DP=41;GPV=1;SPV=0.02564;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:8,4:3,4 +chr14 88212109 . A AATATATATATATATATATAT 0 PASS DP=39;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:10,3:8,2 +chr14 88990751 . T TC 0 PASS DP=58;GPV=1;SPV=0.045802;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,2:12,4 +chr14 89336250 . T C 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:4,4:15,1 +chr14 90046237 . CTT C 0 PASS DP=17;GPV=1;SPV=0.38182;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1 +chr14 90144495 . C CTTTT 0 PASS DP=33;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,8:2,5:3,3 +chr14 90515076 . CT C 0 PASS DP=46;GPV=1;SPV=0.021743;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:16,4:3,2 +chr14 90675064 . C CCGGTGGTT 0 PASS DP=68;GPV=1;SPV=0.040958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,12:13,9:17,3 +chr14 90675068 . CCCCTA C 0 PASS DP=66;GPV=1;SPV=0.017517;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,14:13,9:14,5 +chr14 90675076 . A T 0 PASS DP=58;GPV=1;SPV=0.0067999;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,13:12,9:11,4 +chr14 90675077 . C G 0 PASS DP=66;GPV=1;SPV=0.012514;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:15,10:12,5 +chr14 91044346 . AGAAAGAAAGAAAGAAAGAGAAAGAAAGAAGGAAAGAAAGAAAGAAG A 0 PASS DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2 +chr14 91586577 . G A 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,1:13,3 +chr14 91586581 . G A 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chr14 94598852 . G A 0 PASS DP=75;GPV=1;SPV=8.9063e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:13,13:14,11 +chr14 94701786 . G GA 0 PASS DP=50;GPV=1;SPV=0.04269;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:10,3:7,5 +chr14 94740143 . G T 0 PASS DP=90;GPV=1;SPV=2.2394e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:29,23:19,14:10,9 +chr14 95578854 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:4,6:2,1 +chr14 95817827 . G A 0 PASS DP=74;GPV=1;SPV=1.9774e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:10,10:8,7 +chr14 95845501 . T TCA 0 PASS DP=74;GPV=1;SPV=0.00068033;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,20:13,5:12,15 +chr14 95943673 . A T 0 PASS DP=76;GPV=1;SPV=1.1682e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:10,11:13,8 +chr14 98014407 . C T 0 PASS DP=53;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,3:5,2:1,1 +chr14 98090703 . CTTT C 0 PASS DP=45;GPV=1;SPV=0.0062751;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,8:4,2 +chr14 98247482 . A AT 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1 +chr14 98430947 . C CA 0 PASS DP=78;GPV=1;SPV=0.0045584;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,8:20,6:12,2 +chr14 98656998 . TA T 0 PASS DP=48;GPV=1;SPV=0.0094013;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:13,3:4,3 +chr14 98667025 . C T 0 PASS DP=20;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr14 100100784 . C CA 0 PASS DP=39;GPV=1;SPV=0.093821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:11,6:10,1 +chr14 101724878 . CTA C 0 PASS DP=47;GPV=1;SPV=0.044153;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:12,4:13,4 +chr14 101765734 . AT A 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,1:7,3 +chr14 102198097 . CTTTATTTA C 0 PASS DP=64;GPV=1;SPV=0.026923;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:9,4:17,7 +chr14 102202372 . GT G 0 PASS DP=24;GPV=1;SPV=0.27668;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:8,1:5,2 +chr14 102463416 . C A 0 PASS DP=56;GPV=1;SPV=0.048842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:21,1:5,4 +chr14 102692768 . C CT 0 PASS DP=24;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,4:4,4 +chr14 103467674 . C CA 0 PASS DP=52;GPV=1;SPV=0.0729;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,6:16,5:8,1 +chr14 103683237 . C T 0 PASS DP=85;GPV=1;SPV=9.577e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:13,12:18,6 +chr14 105736712 . C T 0 PASS DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:1,6:16,4 +chr14 105744265 . T A 0 PASS DP=92;GPV=1;SPV=0.015261;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:24,5:24,3 +chr14 105763959 . C T 0 PASS DP=63;GPV=1;SPV=0.028667;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:22,5:8,1 +chr14 105992368 . CT C 0 PASS DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:5,1:17,6 +chr14 105992391 . T TCTTTCTTTCTTTC 0 PASS DP=43;GPV=1;SPV=0.24625;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:9,2:10,2 +chr14 106330206 . T C 0 PASS DP=91;GPV=1;SPV=0.04214;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:17,5:27,3 +chr15 17074312 . T A 0 PASS DP=106;GPV=1;SPV=0.035564;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:51,8:27,3:24,5 +chr15 17949032 . G A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:15,2:3,2 +chr15 19417458 . G A 0 PASS DP=155;GPV=1;SPV=0.042691;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:40,7:35,5 +chr15 19904285 . CT C 0 PASS DP=117;GPV=1;SPV=0.0080542;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:27,2:37,8 +chr15 19925520 . G A 0 PASS DP=228;GPV=1;SPV=0.021921;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:95,15:54,5:41,10 +chr15 20034110 . C T 0 PASS DP=77;GPV=1;SPV=0.077637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:19,1:23,4 +chr15 20104979 . T G 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:13,4:18,1 +chr15 20123651 . TA T 0 PASS DP=49;GPV=1;SPV=0.021168;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,2:13,4 +chr15 20141272 . G T 0 PASS DP=156;GPV=1;SPV=0.0033445;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:64,20:45,12:19,8 +chr15 20239156 . T C 0 PASS DP=113;GPV=1;SPV=0.012734;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:36,4:19,3 +chr15 20251534 . C T 0 PASS DP=194;GPV=1;SPV=0.021476;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:83,21:36,10:47,11 +chr15 20274409 . T C 0 PASS DP=165;GPV=1;SPV=0.018172;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:72,22:38,8:34,14 +chr15 20309052 . TGATGA T 0 PASS DP=109;GPV=1;SPV=0.023365;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:39,1:19,6 +chr15 20427360 . C G 0 PASS DP=43;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,5:8,1 +chr15 20495787 . T A 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,4:3,4 +chr15 20542554 . C G 0 PASS DP=94;GPV=1;SPV=0.001061;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,15:12,9:10,6 +chr15 20585598 . A G 0 PASS DP=75;GPV=1;SPV=0.012777;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:21,4:16,4 +chr15 20760843 . T C 0 PASS DP=27;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:7,2:0,0 +chr15 20940008 . A AGCGAGGCAAG 0 PASS DP=130;GPV=1;SPV=0.026673;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:62,14:33,7:29,7 +chr15 21112441 . TGGCTA T 0 PASS DP=93;GPV=1;SPV=0.059112;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:31,2:22,4 +chr15 21275609 . C CA 0 PASS DP=200;GPV=1;SPV=0.029691;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:88,21:43,10:45,11 +chr15 21355190 . A G 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,3:16,2 +chr15 21442268 . T A 0 PASS DP=77;GPV=1;SPV=0.015531;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:21,6:20,3 +chr15 21495301 . C T 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr15 21640770 . T C 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,6:8,1 +chr15 21642220 . T C 0 PASS DP=35;GPV=1;SPV=0.26383;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:5,2:15,3 +chr15 21917714 . G A 0 PASS DP=109;GPV=1;SPV=0.021811;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:49,14:19,10:30,4 +chr15 22421798 . A C 0 PASS DP=143;GPV=1;SPV=0.039392;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,17:26,9:36,8 +chr15 22597673 . G A 0 PASS DP=58;GPV=1;SPV=0.00014569;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,5:10,15 +chr15 22821649 . C G 0 PASS DP=42;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:1,1:0,1 +chr15 23041964 . G C 0 PASS DP=32;GPV=1;SPV=0.082337;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,1:7,5 +chr15 23043520 . T G 0 PASS DP=37;GPV=1;SPV=0.26573;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1 +chr15 23047926 . T C 0 PASS DP=28;GPV=1;SPV=0.013285;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr15 23149525 . T G 0 PASS DP=49;GPV=1;SPV=0.033582;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1 +chr15 23347821 . C A 0 PASS DP=71;GPV=1;SPV=0.057558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:24,1:12,4 +chr15 24262448 . T C 0 PASS DP=47;GPV=1;SPV=0.0060315;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,6:4,3 +chr15 24369770 . AT A 0 PASS DP=71;GPV=1;SPV=0.04773;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr15 25953441 . CTT C 0 PASS DP=50;GPV=1;SPV=0.086687;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:3,6:3,4 +chr15 25967006 . TTTATATATA T 0 PASS DP=31;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,2:3,4 +chr15 26355115 . C T 0 PASS DP=86;GPV=1;SPV=4.108e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:25,25:15,12:10,13 +chr15 26361251 . G A 0 PASS DP=32;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:4,2:9,2 +chr15 26665926 . G A 0 PASS DP=77;GPV=1;SPV=1.7527e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:8,8:11,9 +chr15 26760768 . G A 0 PASS DP=52;GPV=1;SPV=0.0027222;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,5:6,4 +chr15 26946807 . A G 0 PASS DP=86;GPV=1;SPV=4.2987e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,7:10,8 +chr15 27001888 . G GTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,5:2,4:4,1 +chr15 27306943 . TATATA T 0 PASS DP=48;GPV=1;SPV=0.058021;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:13,3:13,4 +chr15 27307407 . A ATG 0 PASS DP=45;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:11,3:13,1 +chr15 27602343 . G T 0 PASS DP=73;GPV=1;SPV=3.2072e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:6,11:14,9 +chr15 28472246 . T C 0 PASS DP=93;GPV=1;SPV=0.036691;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:24,4:20,1 +chr15 28488117 . G A 0 PASS DP=50;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,4:9,1:10,3 +chr15 28808374 . C T 0 PASS DP=96;GPV=1;SPV=0.011156;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,17:23,5:23,12 +chr15 29975228 . C CAAGA 0 PASS DP=41;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,12:9,9:5,3 +chr15 30150979 . G C 0 PASS DP=53;GPV=1;SPV=0.028132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:18,2:4,3 +chr15 30326364 . A G 0 PASS DP=35;GPV=1;SPV=0.19804;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,5:11,3:7,2 +chr15 30371006 . G C 0 PASS DP=87;GPV=1;SPV=0.036306;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:17,6:21,1 +chr15 30596779 . G A 0 PASS DP=50;GPV=1;SPV=0.033698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,1:11,6 +chr15 30652848 . C T 0 PASS DP=28;GPV=1;SPV=0.013375;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,2:6,7 +chr15 31199330 . T C 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr15 32387887 . G A 0 PASS DP=50;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:3,2:19,10 +chr15 32424950 . A T 0 PASS DP=200;GPV=1;SPV=0.01026;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:92,25:52,17:40,8 +chr15 32457303 . A G 0 PASS DP=82;GPV=1;SPV=0.042279;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:12,4:29,5 +chr15 32591731 . C T 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr15 32738083 . CAAAAAAAAAAAAAAAAAA C 0 PASS DP=28;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:7,3:1,1 +chr15 33271983 . ATT A 0 PASS DP=55;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,0:1,2 +chr15 33572654 . T A 0 PASS DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:23,3:5,1 +chr15 34181727 . C CAT 0 PASS DP=48;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,4:11,3:12,1 +chr15 34518917 . G GAA 0 PASS DP=55;GPV=1;SPV=0.03366;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,14:10,8:14,6 +chr15 34709673 . C CT 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:4,2:7,7 +chr15 36521645 . AGAAAAGAAAG A 0 PASS DP=36;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:8,4:1,3 +chr15 36521672 . A G 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,2:0,2 +chr15 37334425 . T TTATATA 0 PASS DP=34;GPV=1;SPV=0.0054438;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,7:3,1 +chr15 37402739 . T G 0 PASS DP=37;GPV=1;SPV=0.043422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,1:8,5 +chr15 38112415 . T C 0 PASS DP=76;GPV=1;SPV=0.046953;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:47:2,8:0,2:2,6 +chr15 38369233 . A T 0 PASS DP=52;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,4:3,1:1,3 +chr15 40073724 . CTTT C 0 PASS DP=54;GPV=1;SPV=0.035178;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,6:15,5 +chr15 40318685 . T TA 0 PASS DP=40;GPV=1;SPV=0.04741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,8:7,7:6,1 +chr15 40377313 . C CA 0 PASS DP=55;GPV=1;SPV=0.0019978;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:8,9:10,4 +chr15 41615216 . A AT 0 PASS DP=81;GPV=1;SPV=3.565e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:13,9:15,11 +chr15 42785115 . A AT 0 PASS DP=32;GPV=1;SPV=0.019162;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,6:9,1 +chr15 43261074 . GTGT G 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2 +chr15 43608459 . C A 0 PASS DP=42;GPV=1;SPV=0.071818;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,4:9,2 +chr15 44764928 . G A 0 PASS DP=73;GPV=1;SPV=3.7648e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:12,10:8,4 +chr15 46106874 . A G 0 PASS DP=86;GPV=1;SPV=0.03936;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:16,2:25,3 +chr15 46546000 . T C 0 PASS DP=70;GPV=1;SPV=4.3453e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:9,6:9,7 +chr15 47083875 . T TTG 0 PASS DP=42;GPV=1;SPV=0.045213;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:13,7:9,4 +chr15 47133961 . T C 0 PASS DP=42;GPV=1;SPV=0.0073228;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,9:4,2 +chr15 48568052 . G A 0 PASS DP=38;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,4:15,3:3,1 +chr15 50169282 . G A 0 PASS DP=82;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:22,5:9,1:13,4 +chr15 50615163 . CAAAAAA C 0 PASS DP=38;GPV=1;SPV=0.17207;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,5:8,1 +chr15 50772849 . T G 0 PASS DP=26;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,2:3,3 +chr15 51079855 . CAA C 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,5:2,3 +chr15 52697957 . ATTT A 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,3:7,1 +chr15 53135920 . A T 0 PASS DP=66;GPV=1;SPV=0.016315;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:16,9:6,2 +chr15 53703277 . T G 0 PASS DP=68;GPV=1;SPV=0.00011889;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:17,8:10,12 +chr15 54280745 . TAC T 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,3:7,4 +chr15 54475281 . TTTATTATTATTATTA T 0 PASS DP=61;GPV=1;SPV=0.0022329;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:8,20:5,9:3,11 +chr15 55119378 . C T 0 PASS DP=44;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,4:10,1 +chr15 55370885 . GAA G 0 PASS DP=34;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:13,8:1,2 +chr15 55428466 . TCTCA T 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:5,4:4,7 +chr15 58726567 . C CA 0 PASS DP=19;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,4:1,3:0,1 +chr15 60878343 . CAAA C 0 PASS DP=45;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,10:8,9:3,1 +chr15 61184986 . C CAAAAAA 0 PASS DP=27;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:2,4:4,1 +chr15 61277734 . T TC 0 PASS DP=50;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:9,8:6,2:3,6 +chr15 63158567 . ATT A 0 PASS DP=30;GPV=1;SPV=0.0015492;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,14:0,11:5,3 +chr15 64577230 . AATAC A 0 PASS DP=33;GPV=1;SPV=0.029832;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr15 65221802 . CT C 0 PASS DP=44;GPV=1;SPV=0.0022391;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:2,5:9,8 +chr15 65284337 . CT C 0 PASS DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,3:4,3 +chr15 65986793 . C CT 0 PASS DP=28;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,2:4,2 +chr15 66632730 . T C 0 PASS DP=47;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,9:5,6:5,3 +chr15 67244127 . T A 0 PASS DP=75;GPV=1;SPV=1.5575e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:13,12:10,7 +chr15 67875410 . CT C 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3 +chr15 68368877 . C T 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,2:11,2 +chr15 69808686 . A G 0 PASS DP=66;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,4:8,2:11,2 +chr15 71416711 . ATTTTG A 0 PASS DP=60;GPV=1;SPV=0.036162;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:13,6:11,4 +chr15 72151953 . TTTATTTA T 0 PASS DP=55;GPV=1;SPV=0.17271;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,1:17,3 +chr15 72436772 . C T 0 PASS DP=80;GPV=1;SPV=8.075e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:18,31:12,17:6,14 +chr15 72860754 . TATCTATCTATCTATCTATCTATCC T 0 PASS DP=53;GPV=1;SPV=0.0307;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:14,3:8,3 +chr15 72948523 . T TAAA 0 PASS DP=32;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:7,6:7,1 +chr15 74076151 . T G 0 PASS DP=104;GPV=1;SPV=0.041086;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:14,3:26,10 +chr15 74170093 . G A 0 PASS DP=61;GPV=1;SPV=0.049242;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:17,6:18,2 +chr15 74894039 . AGTGTGTGTGTGTGTGTGT A 0 PASS DP=21;GPV=1;SPV=0.10909;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,2:2,2:0,0 +chr15 75184978 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:3,9:6,1 +chr15 76475634 . G A 0 PASS DP=72;GPV=1;SPV=8.1043e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,6:11,9 +chr15 77378188 . T TTATATATATATA 0 PASS DP=60;GPV=1;SPV=0.013807;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,8:10,5 +chr15 77746207 . CAAA C 0 PASS DP=51;GPV=1;SPV=0.006848;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,10:11,8:5,2 +chr15 78920737 . T A 0 PASS DP=40;GPV=1;SPV=8.3675e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr15 78968262 . G C 0 PASS DP=75;GPV=1;SPV=0.030276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:22,3:15,3 +chr15 79273657 . A G 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,1:7,3 +chr15 80637342 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:11,7:1,1 +chr15 82108073 . C CTT 0 PASS DP=27;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,4:4,1 +chr15 82367272 . A G 0 PASS DP=43;GPV=1;SPV=0.0050719;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,1:9,7 +chr15 82367273 . T A 0 PASS DP=42;GPV=1;SPV=0.022726;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,1:8,7 +chr15 82367274 . G T 0 PASS DP=45;GPV=1;SPV=0.011329;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,2:8,7 +chr15 82520259 . A G 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,3:18,1 +chr15 82526543 . ATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAG A 0 PASS DP=52;GPV=1;SPV=0.012459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,10:12,5:10,5 +chr15 82902197 . A AT 0 PASS DP=63;GPV=1;SPV=0.00022489;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:14,15:8,11:6,4 +chr15 84426018 . G A 0 PASS DP=87;GPV=1;SPV=0.026626;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:24,7:17,6 +chr15 85293018 . ATT A 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,3:9,5 +chr15 85355163 . C A 0 PASS DP=34;GPV=1;SPV=0.035837;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,7:1,4:10,3 +chr15 85359195 . C CAAAAAAA 0 PASS DP=33;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:6,7:6,1 +chr15 85765636 . G A 0 PASS DP=39;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,4:3,1:4,3 +chr15 85896830 . G GTCTC 0 PASS DP=34;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:2,1:5,3 +chr15 86160099 . GT G 0 PASS DP=38;GPV=1;SPV=0.0028624;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:6,5:4,7 +chr15 86271043 . A ATTT 0 PASS DP=34;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,3:7,1 +chr15 86391640 . G GT 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr15 86724235 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:11,5:3,1 +chr15 89424577 . G GAATTAGAAAGGTTGCTTCTGCCACCCAGTCACTTCCCAAAGT 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,2:10,2 +chr15 89424578 . T G 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,2:10,2 +chr15 89541444 . A G 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,5:10,6 +chr15 91406849 . CAA C 0 PASS DP=31;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:5,7:0,1 +chr15 93463490 . C CAAAAAAAAAA 0 PASS DP=30;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:6,3:3,1 +chr15 94744908 . AGGAG A 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr15 95100648 . A T 0 PASS DP=68;GPV=1;SPV=0.00022188;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,7:12,3 +chr15 95620717 . T TA 0 PASS DP=34;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,5:3,3 +chr15 97186929 . G A 0 PASS DP=72;GPV=1;SPV=6.0344e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:16,26:6,11:10,15 +chr15 97466847 . GAA G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,2:9,2 +chr15 98367147 . A C 0 PASS DP=40;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,3:3,1:1,2 +chr15 98489320 . G GTA 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr15 98878663 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:8,4:0,1 +chr15 99750660 . A G 0 PASS DP=56;GPV=1;SPV=0.012427;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:17,3:10,6 +chr15 100356520 . C T 0 PASS DP=76;GPV=1;SPV=7.0704e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:10,14:10,8 +chr15 100535801 . C T 0 PASS DP=49;GPV=1;SPV=0.031065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,3:6,5 +chr15 101661101 . G A 0 PASS DP=78;GPV=1;SPV=0.090326;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,4:22,1 +chr15 101755793 . G C 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,1:4,3 +chr15 101759784 . C A 0 PASS DP=85;GPV=1;SPV=0.028059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:25,3:17,3 +chr15 101944808 . C T 0 PASS DP=223;GPV=1;SPV=0.0027971;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:98,29:52,19:46,10 +chr15 101951124 . T C 0 PASS DP=46;GPV=1;SPV=0.024579;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,4:9,2 +chr16 825460 . C T 0 PASS DP=95;GPV=1;SPV=1.1717e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:13,6:16,10 +chr16 858660 . G GC 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,3:14,2 +chr16 1092432 . A G 0 PASS DP=42;GPV=1;SPV=0.28111;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:7,3:20,1 +chr16 1511927 . G T 0 PASS DP=62;GPV=1;SPV=0.0012196;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,2:15,8 +chr16 2524524 . G A 0 PASS DP=73;GPV=1;SPV=4.1033e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:11,10:10,12 +chr16 2599069 . T A 0 PASS DP=94;GPV=1;SPV=4.0325e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:31,21:17,14:14,7 +chr16 3146294 . G GC 0 PASS DP=74;GPV=1;SPV=0.00017382;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:10,4:10,14 +chr16 3944592 . AAAGAAGAAGAAG A 0 PASS DP=41;GPV=1;SPV=0.0020704;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:7,6:0,2 +chr16 4227064 . A G 0 PASS DP=57;GPV=1;SPV=0.017118;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:12,3:8,7 +chr16 4237956 . G A 0 PASS DP=71;GPV=1;SPV=4.0661e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:13,7:13,10 +chr16 5202753 . T C 0 PASS DP=33;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,1:5,4 +chr16 5488566 . TG T 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:14,4:2,2 +chr16 6806836 . A ATATATATATATAT 0 PASS DP=27;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,1:4,4 +chr16 6861823 . G GTT 0 PASS DP=24;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,3:4,2 +chr16 6864991 . TTTTC T 0 PASS DP=42;GPV=1;SPV=0.062457;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,1:9,4 +chr16 7330510 . T G 0 PASS DP=51;GPV=1;SPV=0.013487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,6:4,2:6,4 +chr16 7508622 . C T 0 PASS DP=70;GPV=1;SPV=0.00037122;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,8:12,5 +chr16 8707353 . A ATTTTTTTTTT 0 PASS DP=57;GPV=1;SPV=0.0087781;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,7:8,4:15,3 +chr16 8773105 . TACAC T 0 PASS DP=78;GPV=1;SPV=0.0051611;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,16:12,12:9,4 +chr16 8990182 . C CA 0 PASS DP=57;GPV=1;SPV=0.0026611;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,9:15,7:7,2 +chr16 9193261 . T G 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,1:14,3 +chr16 9193263 . CTTTCTGTCTCTT C 0 PASS DP=40;GPV=1;SPV=0.040021;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,1:13,4 +chr16 9965116 . T A 0 PASS DP=85;GPV=1;SPV=9.2748e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:14,6:13,8 +chr16 10986012 . ATTTTTTTTT A 0 PASS DP=41;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:7,1:6,5 +chr16 11486257 . AGATGGATGGATGGAGG A 0 PASS DP=35;GPV=1;SPV=0.18237;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,5:13,1 +chr16 11520664 . CA C 0 PASS DP=34;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1 +chr16 11855946 . GTTTTTTTTTTTTTT G 0 PASS DP=38;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,9:7,6:4,3 +chr16 11893093 . G GT 0 PASS DP=83;GPV=1;SPV=9.5714e-08;SS=2;SSC=70;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:14,11:8,8 +chr16 12101301 . C CTTTTTTT 0 PASS DP=25;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:1,3:3,1 +chr16 12182189 . G GT 0 PASS DP=52;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,10:5,9:3,1 +chr16 12441089 . C CT 0 PASS DP=41;GPV=1;SPV=0.065489;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:11,3:6,1 +chr16 12619111 . GAAAAAAAAAAAAAAAAAAAAA G 0 PASS DP=30;GPV=1;SPV=0.0039295;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,7:2,1 +chr16 12970351 . GTGTATATA G 0 PASS DP=22;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:2,2:1,3 +chr16 13107472 . G GAC 0 PASS DP=44;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:6,5:1,1 +chr16 14435896 . T TCACA 0 PASS DP=63;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,14:18,12:0,2 +chr16 15263066 . C T 0 PASS DP=66;GPV=1;SPV=0.13506;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:23,2:19,4 +chr16 16324387 . C T 0 PASS DP=107;GPV=1;SPV=0.041457;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:11,4:39,9 +chr16 16468806 . G C 0 PASS DP=68;GPV=1;SPV=0.064494;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:20,5:18,1 +chr16 16473782 . G C 0 PASS DP=113;GPV=1;SPV=0.026432;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:14,4:28,9 +chr16 16508138 . GA G 0 PASS DP=44;GPV=1;SPV=0.15645;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,1:15,4 +chr16 16600714 . TC T 0 PASS DP=65;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:13,4:9,3:4,1 +chr16 16607270 . C T 0 PASS DP=80;GPV=1;SPV=0.0075808;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:10,3:14,9 +chr16 16663176 . T C 0 PASS DP=95;GPV=1;SPV=0.024133;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:20,9:24,3 +chr16 16936582 . A ATAT 0 PASS DP=24;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,3:0,0:0,3 +chr16 18683772 . G A 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,2:1,2 +chr16 19093031 . T C 0 PASS DP=50;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:14,6:2,2:12,4 +chr16 19363464 . CAA C 0 PASS DP=31;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,9:4,8:0,1 +chr16 20513554 . T A 0 PASS DP=71;GPV=1;SPV=0.00016294;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,5:11,6 +chr16 21244072 . TA T 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,2:17,4 +chr16 21921367 . C T 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr16 22042437 . A G 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:9,9:13,8 +chr16 22081064 . T TAA 0 PASS DP=90;GPV=1;SPV=0.036285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:19,7:18,4 +chr16 22234877 . C CT 0 PASS DP=28;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,7:1,1 +chr16 22955353 . C T 0 PASS DP=92;GPV=1;SPV=0.0014133;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:24,9:21,4 +chr16 23875562 . C CAT 0 PASS DP=72;GPV=1;SPV=0.040176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,9:19,7:10,2 +chr16 23875617 . CAT C 0 PASS DP=83;GPV=1;SPV=0.031193;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:22,7:12,5 +chr16 24396302 . CT C 0 PASS DP=42;GPV=1;SPV=0.0010413;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,4:7,7 +chr16 24420042 . A T 0 PASS DP=71;GPV=1;SPV=3.2196e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:13,4:12,12 +chr16 24440766 . C CT 0 PASS DP=33;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3 +chr16 24461423 . CTT C 0 PASS DP=32;GPV=1;SPV=0.00037161;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,7:3,3:1,4 +chr16 24482261 . CT C 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,6:2,3 +chr16 24830828 . ATT A 0 PASS DP=23;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr16 24888478 . CT C 0 PASS DP=21;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:3,2:0,0 +chr16 25182809 . A C 0 PASS DP=92;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:6,3:2,2:4,1 +chr16 26663859 . A G 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,1:11,3 +chr16 26737206 . CTT C 0 PASS DP=34;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:5,1:6,4 +chr16 27077403 . C CCTTCCTTCCTTCCTTCCTTTCTTTCTTT 0 PASS DP=47;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:4,1:15,3 +chr16 28819391 . CT C 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,7:4,1 +chr16 29057728 . G A 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr16 29495118 . A G 0 PASS DP=48;GPV=1;SPV=0.1625;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2 +chr16 29677012 . C CAA 0 PASS DP=37;GPV=1;SPV=0.029832;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:6,6:5,2 +chr16 30219035 . AACACACACACACACAC A 0 PASS DP=57;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,6:18,4:0,2 +chr16 30244853 . A AT 0 PASS DP=74;GPV=1;SPV=0.024615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,9:28,7:5,2 +chr16 30327682 . T C 0 PASS DP=68;GPV=1;SPV=0.0022268;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:13,8:12,13 +chr16 31027172 . ATT A 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,2:5,4 +chr16 31660065 . T G 0 PASS DP=88;GPV=1;SPV=4.4711e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:24,33:14,18:10,15 +chr16 32431415 . C CA 0 PASS DP=154;GPV=1;SPV=0.0046163;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:77,9:36,3:41,6 +chr16 32432148 . CTATTTT C 0 PASS DP=125;GPV=1;SPV=0.043374;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:22,2:35,12 +chr16 32742591 . T A 0 PASS DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,2:6,3 +chr16 32806184 . C A 0 PASS DP=241;GPV=1;SPV=0.037006;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:123,15:61,11:62,4 +chr16 32828383 . A G 0 PASS DP=163;GPV=1;SPV=0.0064393;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:79,18:33,11:46,7 +chr16 32840133 . T C 0 PASS DP=508;GPV=1;SPV=0.033921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:283:248,35:118,22:130,13 +chr16 32840428 . A G 0 PASS DP=331;GPV=1;SPV=0.0037718;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:149,32:56,7:93,25 +chr16 32924356 . T G 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3 +chr16 33066992 . G C 0 PASS DP=51;GPV=1;SPV=0.03297;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:11,2:13,4 +chr16 33336271 . G C 0 PASS DP=248;GPV=1;SPV=0.025434;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:133,22:74,15:59,7 +chr16 33337167 . T C 0 PASS DP=154;GPV=1;SPV=0.026253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:91,13:43,5:48,8 +chr16 33573794 . C T 0 PASS DP=130;GPV=1;SPV=4.2437e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:48,26:24,15:24,11 +chr16 33733280 . AC A 0 PASS DP=349;GPV=1;SPV=0.015777;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:153,21:81,11:72,10 +chr16 33737560 . G T 0 PASS DP=287;GPV=1;SPV=0.025573;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:137,20:45,8:92,12 +chr16 33913297 . G A 0 PASS DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,10:12,5 +chr16 34641277 . T TA 0 PASS DP=110;GPV=1;SPV=0.031989;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,7:31,2:16,5 +chr16 34641305 . C T 0 PASS DP=114;GPV=1;SPV=0.015177;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:52,6:30,2:22,4 +chr16 34790316 . A T 0 PASS DP=108;GPV=1;SPV=0.046508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:26,10:22,4 +chr16 34805509 . G A 0 PASS DP=186;GPV=1;SPV=0.0039048;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:83,13:61,9:22,4 +chr16 36108857 . A G 0 PASS DP=125;GPV=1;SPV=0.046237;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,6:22,1:26,5 +chr16 36121348 . C G 0 PASS DP=139;GPV=1;SPV=0.039594;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:30,4:43,8 +chr16 36122861 . G A 0 PASS DP=68;GPV=1;SPV=3.0806e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:14,7:8,7 +chr16 37816259 . A T 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr16 37852203 . G C 0 PASS DP=100;GPV=1;SPV=0.006543;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:17,7:30,1 +chr16 37852518 . C G 0 PASS DP=185;GPV=1;SPV=0.028777;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:94,14:13,5:81,9 +chr16 38280337 . T C 0 PASS DP=84;GPV=1;SPV=0.0076646;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:3,4:30,8 +chr16 47102417 . A T 0 PASS DP=93;GPV=1;SPV=1.0295e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:23,25:11,14:12,11 +chr16 48737570 . T TACAC 0 PASS DP=65;GPV=1;SPV=0.0088657;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,11:9,5:9,6 +chr16 48805638 . C CA 0 PASS DP=47;GPV=1;SPV=0.026903;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,7:10,6:5,1 +chr16 50116900 . CA C 0 PASS DP=35;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:9,4:4,2 +chr16 50761746 . A ATATCTATCTATCTATC 0 PASS DP=53;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:9,7:10,3 +chr16 51523034 . C T 0 PASS DP=68;GPV=1;SPV=3.9184e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:5,9:7,6 +chr16 52660470 . TAAAAAAA T 0 PASS DP=24;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,4:5,3 +chr16 52804555 . AT A 0 PASS DP=48;GPV=1;SPV=1.6121e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,13:2,6:2,7 +chr16 52991588 . CA C 0 PASS DP=56;GPV=1;SPV=0.052719;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,3:10,2 +chr16 54702775 . G A 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,6:4,2 +chr16 57030466 . GAAAA G 0 PASS DP=35;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:13,2:5,2 +chr16 57899327 . A T 0 PASS DP=87;GPV=1;SPV=2.0528e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:25,27:15,18:10,9 +chr16 57973361 . C CAA 0 PASS DP=40;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,6:7,3 +chr16 58478403 . G A 0 PASS DP=60;GPV=1;SPV=0.020668;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,4:7,1:4,3 +chr16 59284332 . A T 0 PASS DP=81;GPV=1;SPV=1.107e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:11,10:12,12 +chr16 59666520 . T TAC 0 PASS DP=58;GPV=1;SPV=0.01056;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:14,9:7,5 +chr16 60238853 . G A 0 PASS DP=60;GPV=1;SPV=6.2662e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,4:7,7 +chr16 62126371 . ATATATTCAG A 0 PASS DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2 +chr16 62471538 . T A 0 PASS DP=77;GPV=1;SPV=2.1631e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:14,9:10,9 +chr16 63421692 . A G 0 PASS DP=70;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:38:0,2:0,0:0,2 +chr16 64312021 . TA T 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,4:6,1 +chr16 65648766 . A C 0 PASS DP=52;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:3,3:2,2:1,1 +chr16 65690848 . T G 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,4:8,1 +chr16 66861200 . G A 0 PASS DP=54;GPV=1;SPV=0.047776;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:22,6:4,5 +chr16 66970863 . C T 0 PASS DP=71;GPV=1;SPV=9.6406e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:12,9:14,5 +chr16 68532521 . CTGTGTGTGTGTG C 0 PASS DP=58;GPV=1;SPV=0.0038666;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:12,7:10,7 +chr16 68583454 . CT C 0 PASS DP=26;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,8:0,7:3,1 +chr16 68922027 . TA T 0 PASS DP=82;GPV=1;SPV=3.5648e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:15,7:14,7 +chr16 69511409 . C A 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,1:20,3 +chr16 69665646 . G A 0 PASS DP=40;GPV=1;SPV=0.098151;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:7,2:15,4 +chr16 70090016 . A C 0 PASS DP=75;GPV=1;SPV=0.04939;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:18,4:18,4 +chr16 70125552 . C CA 0 PASS DP=59;GPV=1;SPV=0.050318;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,6:19,5:7,1 +chr16 70187410 . T C 0 PASS DP=67;GPV=1;SPV=0.048775;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:15,1:17,4 +chr16 70188113 . G A 0 PASS DP=56;GPV=1;SPV=0.022677;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,3:14,3 +chr16 70532357 . C CAAAAAAAAAAA 0 PASS DP=50;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,7:9,4:15,3 +chr16 70902823 . T A 0 PASS DP=31;GPV=1;SPV=0.067669;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:4,3:4,1 +chr16 70937669 . C CA 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,8:5,2 +chr16 71031199 . CA C 0 PASS DP=34;GPV=1;SPV=0.006391;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:3,4:5,1 +chr16 71092724 . A G 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,2:7,7 +chr16 71382155 . A AAGGAAGGAAGGAAGGAAG 0 PASS DP=43;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:10,5:5,1 +chr16 72195980 . AATGTGTGTGT A 0 PASS DP=62;GPV=1;SPV=0.093861;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,1:16,3 +chr16 72323845 . C CA 0 PASS DP=45;GPV=1;SPV=0.029259;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,7:13,6:6,1 +chr16 73155180 . C CAA 0 PASS DP=39;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:20,4:3,1 +chr16 73346634 . G A 0 PASS DP=79;GPV=1;SPV=4.699e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:19,26:12,16:7,10 +chr16 73534743 . G A 0 PASS DP=62;GPV=1;SPV=1.0995e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:7,9:8,7 +chr16 73606180 . TAAAAAAAAA T 0 PASS DP=29;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2 +chr16 74109717 . ATTTAAT A 0 PASS DP=54;GPV=1;SPV=0.075047;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4 +chr16 74138987 . T TACAC 0 PASS DP=41;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:4,6:1,2 +chr16 74512160 . C CTTTT 0 PASS DP=52;GPV=1;SPV=0.028446;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:6,8:16,2 +chr16 74882807 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:8,5:3,1 +chr16 75438992 . C CTT 0 PASS DP=55;GPV=1;SPV=0.037457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,9:13,8:4,1 +chr16 76056284 . CT C 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,7:12,4 +chr16 76092653 . C T 0 PASS DP=75;GPV=1;SPV=1.4245e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:10,7:10,8 +chr16 76518615 . T TG 0 PASS DP=62;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,4:9,1:8,3 +chr16 76974053 . A AT 0 PASS DP=87;GPV=1;SPV=8.9816e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,19:20,11:7,8 +chr16 77910158 . A C 0 PASS DP=84;GPV=1;SPV=1.6041e-09;SS=2;SSC=87;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:20,26:15,11:5,15 +chr16 78229508 . A G 0 PASS DP=65;GPV=1;SPV=0.005531;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:9,5:14,4 +chr16 78991600 . C CAAAAAAAA 0 PASS DP=30;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:7,9:4,1 +chr16 80723975 . G GAA 0 PASS DP=50;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,9:10,5:7,4 +chr16 81159638 . C T 0 PASS DP=100;GPV=1;SPV=1.1066e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:31,28:21,19:10,9 +chr16 82901364 . GTGTC G 0 PASS DP=63;GPV=1;SPV=0.040194;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,7:13,6 +chr16 83000574 . C CT 0 PASS DP=37;GPV=1;SPV=0.027005;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,5:5,5 +chr16 83191464 . T G 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,3:8,1 +chr16 83201744 . T TA 0 PASS DP=53;GPV=1;SPV=0.0017626;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:11,4:7,4 +chr16 83334363 . A T 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,3:16,1 +chr16 83405655 . C T 0 PASS DP=85;GPV=1;SPV=0.00046557;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,7:18,7 +chr16 83443717 . AAAAAAAAAAAAAAAAAAAATATAT A 0 PASS DP=31;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,15:4,7:4,8 +chr16 83460982 . A AACAC 0 PASS DP=40;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:7,6:1,2 +chr16 83843818 . G A 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:21,2:14,2 +chr16 85387996 . A G 0 PASS DP=36;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,5:1,4:5,1 +chr16 85443982 . C CTTT 0 PASS DP=18;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:1,3:2,2 +chr16 86040590 . G A 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chr16 86108465 . TTAC T 0 PASS DP=44;GPV=1;SPV=0.06862;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4 +chr16 86421862 . CA C 0 PASS DP=37;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,5:7,1 +chr16 86470758 . CAAAA C 0 PASS DP=43;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:7,8:3,1 +chr16 86720545 . T TCTCTCTCTCACACACACACACACACA 0 PASS DP=63;GPV=1;SPV=0.031293;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,8:20,2:6,6 +chr16 87814170 . CA C 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1 +chr16 88590564 . C CTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,5:6,1 +chr16 89634087 . T C 0 PASS DP=43;GPV=1;SPV=0.0055698;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,4:5,7 +chr17 118657 . T C 0 PASS DP=73;GPV=1;SPV=0.04316;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:21,2:14,12 +chr17 218207 . C T 0 PASS DP=68;GPV=1;SPV=0.035018;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,5:17,5 +chr17 232829 . CGTGT C 0 PASS DP=49;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,9:9,6:4,3 +chr17 234083 . G A 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,4:8,1 +chr17 242763 . A AC 0 PASS DP=47;GPV=1;SPV=0.15472;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:9,2:19,3 +chr17 489078 . T TG 0 PASS DP=32;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:9,3:1,3 +chr17 643595 . C A 0 PASS DP=59;GPV=1;SPV=0.0016056;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:19,12:0,6 +chr17 724675 . TA T 0 PASS DP=34;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,2:1,2:0,0 +chr17 790918 . C A 0 PASS DP=22;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:3,1:2,1 +chr17 994181 . T C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:1,1:8,3 +chr17 1121543 . TC T 0 PASS DP=81;GPV=1;SPV=0.033085;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:17,4:24,2 +chr17 1164351 . T C 0 PASS DP=54;GPV=1;SPV=0.03797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:23,2:5,5 +chr17 1404055 . GAGAGGGC G 0 PASS DP=65;GPV=1;SPV=0.01571;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,16:12,9:14,7 +chr17 1427030 . CAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,3:5,3 +chr17 1563700 . CA C 0 PASS DP=40;GPV=1;SPV=0.00066955;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,10:1,7:3,3 +chr17 1961983 . G A 0 PASS DP=50;GPV=1;SPV=0.0070131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,10:8,8:3,2 +chr17 1964788 . C CTT 0 PASS DP=32;GPV=1;SPV=0.00011908;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,8:0,6:1,2 +chr17 2352775 . T C 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,4:12,2 +chr17 2778007 . T G 0 PASS DP=29;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,6:2,1 +chr17 2889889 . A ATATATATATTT 0 PASS DP=36;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,5:8,4:6,1 +chr17 3240047 . TAAAA T 0 PASS DP=63;GPV=1;SPV=0.018621;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:15,5:6,6 +chr17 3649451 . CA C 0 PASS DP=37;GPV=1;SPV=0.0056346;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,8:4,4 +chr17 3966363 . GTTTTTTTTTTTTTTTTTTT G 0 PASS DP=26;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,4:4,2 +chr17 4564645 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:2,1:10,4 +chr17 4715726 . A C 0 PASS DP=50;GPV=1;SPV=0.083573;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,5:13,2 +chr17 4999797 . G C 0 PASS DP=89;GPV=1;SPV=3.0006e-10;SS=2;SSC=95;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:21,29:14,18:7,11 +chr17 5098508 . A C 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,2:10,3 +chr17 7005474 . CT C 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,4:3,1 +chr17 7664407 . CT C 0 PASS DP=71;GPV=1;SPV=0.041463;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:7,4:21,2 +chr17 8020089 . C CT 0 PASS DP=36;GPV=1;SPV=0.22175;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:8,3:9,2 +chr17 8044105 . G GAGGAAGGA 0 PASS DP=38;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:8,3:6,1 +chr17 9113937 . C T 0 PASS DP=71;GPV=1;SPV=6.884e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:8,10:10,6 +chr17 9887384 . C T 0 PASS DP=95;GPV=1;SPV=3.7963e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:32,22:18,16:14,6 +chr17 10162066 . C CAAAA 0 PASS DP=46;GPV=1;SPV=0.18543;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:21,4:6,1 +chr17 10846696 . C T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,3:7,1 +chr17 11200174 . A T 0 PASS DP=73;GPV=1;SPV=4.0799e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,10:13,4 +chr17 11435295 . A C 0 PASS DP=88;GPV=1;SPV=9.1893e-11;SS=2;SSC=100;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:4,13:10,6 +chr17 12743486 . CTTTT C 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1 +chr17 12807119 . G A 0 PASS DP=72;GPV=1;SPV=1.0952e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:6,7:11,11 +chr17 13396594 . C CT 0 PASS DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,2:11,2 +chr17 14522470 . GA G 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1 +chr17 14950148 . C CA 0 PASS DP=54;GPV=1;SPV=0.0029865;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,14:13,9:5,5 +chr17 15317992 . T C 0 PASS DP=37;GPV=1;SPV=0.022727;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,1:5,4 +chr17 18608787 . C A 0 PASS DP=107;GPV=1;SPV=0.018744;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:47,18:24,7:23,11 +chr17 18687312 . T TC 0 PASS DP=35;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:4,2:9,4 +chr17 18717186 . A ATG 0 PASS DP=45;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,9:5,1:6,8 +chr17 19587866 . T C 0 PASS DP=74;GPV=1;SPV=0.1063;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:24,2:19,3 +chr17 19951263 . A G 0 PASS DP=37;GPV=1;SPV=0.025931;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1 +chr17 20144182 . T C 0 PASS DP=42;GPV=1;SPV=0.022163;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1 +chr17 20780985 . A G 0 PASS DP=73;GPV=1;SPV=0.037131;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:17,7:11,2:6,5 +chr17 21324903 . T C 0 PASS DP=99;GPV=1;SPV=0.038797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:19,6:23,5 +chr17 21356979 . T C 0 PASS DP=57;GPV=1;SPV=0.00014725;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:8,4:12,11 +chr17 21694470 . T C 0 PASS DP=79;GPV=1;SPV=0.050308;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:22,5:21,1 +chr17 21754166 . A G 0 PASS DP=84;GPV=1;SPV=0.043039;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:17,5:19,7 +chr17 21776339 . C T 0 PASS DP=64;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,2:2,1:2,1 +chr17 21987969 . GTAATGTAATA G 0 PASS DP=83;GPV=1;SPV=0.013655;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,12:12,5:19,7 +chr17 22855727 . G A 0 PASS DP=273;GPV=1;SPV=0.041915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:133,15:56,4:77,11 +chr17 22930425 . G A 0 PASS DP=69;GPV=1;SPV=0.068138;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:30,4:2,0 +chr17 22945311 . G C 0 PASS DP=43;GPV=1;SPV=0.044156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:15,1:4,4 +chr17 23140593 . G A 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,1:0,3 +chr17 23145205 . T C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr17 26578449 . A G 0 PASS DP=302;GPV=1;SPV=0.046444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:131,23:74,12:57,11 +chr17 26597652 . G A 0 PASS DP=79;GPV=1;SPV=0.028065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:3,3:34,6 +chr17 26750493 . CA C 0 PASS DP=82;GPV=1;SPV=0.035593;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:22,5:12,4 +chr17 26950327 . C A 0 PASS DP=344;GPV=1;SPV=0.010726;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:151,17:70,11:81,6 +chr17 26950336 . T C 0 PASS DP=349;GPV=1;SPV=0.03988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:147,23:72,11:75,12 +chr17 26950372 . G A 0 PASS DP=341;GPV=1;SPV=0.0004366;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:142,25:73,16:69,9 +chr17 26958530 . C A 0 PASS DP=205;GPV=1;SPV=0.029729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:93,22:43,10:50,12 +chr17 26970947 . C T 0 PASS DP=203;GPV=1;SPV=0.041873;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:101,17:41,4:60,13 +chr17 27491304 . GGTGTGTGTGTGT G 0 PASS DP=40;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:6,7:5,1 +chr17 28503758 . CT C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1 +chr17 28553186 . C CT 0 PASS DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:13,4:1,0 +chr17 29602901 . G A 0 PASS DP=74;GPV=1;SPV=4.6208e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:10,12:10,6 +chr17 31200443 . C CA 0 PASS DP=80;GPV=1;SPV=2.5306e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,22:15,13:12,9 +chr17 31451458 . CA C 0 PASS DP=38;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,6:5,3 +chr17 32603522 . T A 0 PASS DP=56;GPV=1;SPV=0.0066111;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,9:16,6:2,3 +chr17 32632586 . T TAC 0 PASS DP=49;GPV=1;SPV=0.023915;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,9:14,8:4,1 +chr17 32893334 . T C 0 PASS DP=68;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:14,4:7,3:7,1 +chr17 33233620 . G T 0 PASS DP=62;GPV=1;SPV=6.4811e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,24:7,11:9,13 +chr17 33768011 . A AT 0 PASS DP=55;GPV=1;SPV=0.0041183;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:12,6:7,3 +chr17 33857486 . G A 0 PASS DP=74;GPV=1;SPV=1.8997e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,27:11,16:10,11 +chr17 34659136 . C T 0 PASS DP=105;GPV=1;SPV=1.1879e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:29,26:19,16:10,10 +chr17 34912446 . CT C 0 PASS DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:4,3:3,1 +chr17 36163680 . G A 0 PASS DP=87;GPV=1;SPV=0.010382;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:31,3:6,10 +chr17 36167665 . C T 0 PASS DP=85;GPV=1;SPV=0.016719;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:40,8:1,3 +chr17 36176137 . C G 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr17 36208207 . T TTATATATA 0 PASS DP=45;GPV=1;SPV=0.034394;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2 +chr17 36254409 . G A 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,3:2,1 +chr17 36337263 . G A 0 PASS DP=55;GPV=1;SPV=0.022245;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:18,6:2,1 +chr17 36350885 . C T 0 PASS DP=149;GPV=1;SPV=0.005383;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:61,22:36,11:25,11 +chr17 36448257 . A G 0 PASS DP=62;GPV=1;SPV=2.6735e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,12:8,4 +chr17 36789051 . CTG C 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,2:11,3 +chr17 36789063 . C CTT 0 PASS DP=52;GPV=1;SPV=0.0088503;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,2:9,5 +chr17 36854288 . CT C 0 PASS DP=44;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:6,6:2,2 +chr17 36877008 . A ATTTTTT 0 PASS DP=45;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,5:8,3 +chr17 37403368 . CT C 0 PASS DP=33;GPV=1;SPV=0.00028635;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,9:0,1 +chr17 37951297 . TAA T 0 PASS DP=55;GPV=1;SPV=0.0011038;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,10:4,2:7,8 +chr17 38192668 . G A 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr17 39037193 . A AC 0 PASS DP=53;GPV=1;SPV=0.0019978;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,6:5,7 +chr17 41301085 . CA C 0 PASS DP=49;GPV=1;SPV=0.015698;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:11,18:8,16:3,2 +chr17 41364916 . G A 0 PASS DP=99;GPV=1;SPV=2.876e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:29,30:13,20:16,10 +chr17 41561112 . T TAAA 0 PASS DP=40;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:5,6:2,1 +chr17 43349954 . ATCC A 0 PASS DP=84;GPV=1;SPV=1.0124e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:14,9:15,7 +chr17 43404625 . TA T 0 PASS DP=34;GPV=1;SPV=0.039921;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4 +chr17 44062221 . C CA 0 PASS DP=45;GPV=1;SPV=0.0061699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,9:12,8:3,1 +chr17 45586178 . C T 0 PASS DP=139;GPV=1;SPV=0.026276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:67,11:24,3:43,8 +chr17 45587450 . G A 0 PASS DP=31;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:2,3:7,1 +chr17 45835683 . T A 0 PASS DP=108;GPV=1;SPV=3.9119e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:35,35:17,13:18,22 +chr17 46096153 . C CT 0 PASS DP=54;GPV=1;SPV=0.013354;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:5,3:15,6 +chr17 46198422 . TAAA T 0 PASS DP=60;GPV=1;SPV=0.056363;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,8:19,7:9,1 +chr17 46245801 . AG A 0 PASS DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:29,3:7,1 +chr17 46298641 . G A 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,7:3,1 +chr17 46693693 . T C 0 PASS DP=48;GPV=1;SPV=0.04952;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:1,2:16,6 +chr17 46900162 . CATATACATATAT C 0 PASS DP=28;GPV=1;SPV=0.29464;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,5:3,3:5,2 +chr17 47340766 . AT A 0 PASS DP=34;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4 +chr17 47653271 . A ATTTTT 0 PASS DP=34;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,4:9,4 +chr17 48069374 . G T 0 PASS DP=79;GPV=1;SPV=8.4582e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:10,11:12,12 +chr17 48976580 . C T 0 PASS DP=76;GPV=1;SPV=0.010284;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,4:16,3 +chr17 49163751 . C T 0 PASS DP=48;GPV=1;SPV=0.00034194;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,9:9,2 +chr17 49288055 . C CA 0 PASS DP=52;GPV=1;SPV=0.083772;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,7:10,6:5,1 +chr17 49347740 . G T 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,3:3,1:2,2 +chr17 50093976 . CAA C 0 PASS DP=42;GPV=1;SPV=0.046847;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:9,5:2,1 +chr17 50645371 . CA C 0 PASS DP=27;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:6,3:4,1 +chr17 50864056 . C CAAAAAA 0 PASS DP=28;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,3:3,3 +chr17 50913604 . TTTTCTTTCTTTC T 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:5,1:14,5 +chr17 51026674 . CT C 0 PASS DP=37;GPV=1;SPV=0.0013501;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,6:6,3 +chr17 52259764 . C T 0 PASS DP=60;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:6,3:21,1 +chr17 53556009 . C T 0 PASS DP=56;GPV=1;SPV=1.4432e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:9,8:7,8 +chr17 55515086 . G T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr17 57062208 . T TG 0 PASS DP=58;GPV=1;SPV=0.064064;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:9,2:22,4 +chr17 57083097 . T A 0 PASS DP=67;GPV=1;SPV=0.033188;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:16,4:15,5 +chr17 57129427 . C CA 0 PASS DP=38;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:12,7:1,1 +chr17 57767301 . T TTCTCTCTCTC 0 PASS DP=42;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:11,1:4,3 +chr17 58629217 . G A 0 PASS DP=79;GPV=1;SPV=5.2697e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:16,7:10,10 +chr17 60978906 . C G 0 PASS DP=73;GPV=1;SPV=0.030816;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,1:17,5 +chr17 61113793 . G A 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr17 61670595 . GAT G 0 PASS DP=48;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,6:10,4:4,2 +chr17 61940990 . C CT 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,5:3,3 +chr17 62094937 . C A 0 PASS DP=46;GPV=1;SPV=0.089257;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,5:9,1:9,4 +chr17 62820819 . C CGTGTGT 0 PASS DP=69;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:13,13:8,10:5,3 +chr17 63500193 . C CTTT 0 PASS DP=31;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,6:4,2 +chr17 63890018 . C CT 0 PASS DP=48;GPV=1;SPV=0.0086905;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,6:9,6 +chr17 64360582 . C CTGTGTGTGTG 0 PASS DP=55;GPV=1;SPV=0.030329;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:18,7:11,4 +chr17 64909760 . G A 0 PASS DP=114;GPV=1;SPV=0.0018344;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:50,24:25,14:25,10 +chr17 64932791 . G A 0 PASS DP=83;GPV=1;SPV=0.065677;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:18,4:26,1 +chr17 65503063 . A T 0 PASS DP=51;GPV=1;SPV=0.00088893;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:9,6:10,6 +chr17 66554880 . C CTTTTTTTT 0 PASS DP=22;GPV=1;SPV=0.21212;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:2,3:2,1 +chr17 67391149 . G GA 0 PASS DP=59;GPV=1;SPV=0.0073681;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,15:11,4:10,11 +chr17 68381243 . G A 0 PASS DP=82;GPV=1;SPV=3.5193e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:23,26:11,14:12,12 +chr17 68455361 . C CA 0 PASS DP=52;GPV=1;SPV=0.001816;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,13:11,12:2,1 +chr17 68622246 . A G 0 PASS DP=42;GPV=1;SPV=0.024999;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:3,4:10,2 +chr17 69831580 . T A 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2 +chr17 70003024 . C CCTTCCTT 0 PASS DP=43;GPV=1;SPV=0.2416;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:5,2:16,2 +chr17 71469205 . T G 0 PASS DP=45;GPV=1;SPV=0.036342;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,4:11,2 +chr17 71610436 . CTA C 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,3:2,4 +chr17 71906247 . G T 0 PASS DP=41;GPV=1;SPV=0.015516;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,2:9,3 +chr17 72484836 . GA G 0 PASS DP=29;GPV=1;SPV=0.16126;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:9,4:4,1 +chr17 72590124 . C CA 0 PASS DP=54;GPV=1;SPV=0.038501;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:11,5:7,1 +chr17 72809202 . T C 0 PASS DP=71;GPV=1;SPV=0.043736;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:17,2:11,9 +chr17 73224263 . C A 0 PASS DP=31;GPV=1;SPV=0.0051869;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:3,5:5,4 +chr17 73963872 . T TAA 0 PASS DP=25;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,3:2,3 +chr17 75233385 . TTCTTTC T 0 PASS DP=52;GPV=1;SPV=0.017005;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:7,3:15,14 +chr17 75497344 . CT C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr17 75527167 . CA C 0 PASS DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:10,8:5,5 +chr17 75532079 . T C 0 PASS DP=37;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:8,1:10,3 +chr17 75630844 . G T 0 PASS DP=55;GPV=1;SPV=0.00032421;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,12:12,8:6,4 +chr17 76092335 . C T 0 PASS DP=95;GPV=1;SPV=1.6557e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:14,10:13,13 +chr17 76096511 . C CAA 0 PASS DP=41;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,8:10,6:3,2 +chr17 76600480 . G T 0 PASS DP=90;GPV=1;SPV=1.036e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:14,7:8,9 +chr17 77025779 . G A 0 PASS DP=81;GPV=1;SPV=3.472e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:19,24:8,13:11,11 +chr17 77485248 . A G 0 PASS DP=55;GPV=1;SPV=0.093318;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:22,4:8,1 +chr17 78382636 . G GT 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr17 79030319 . T TTGTGTGTG 0 PASS DP=64;GPV=1;SPV=0.048447;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,11:15,7:12,4 +chr17 80024394 . GAC G 0 PASS DP=94;GPV=1;SPV=0.022253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:19,5:25,4 +chr17 80634716 . G A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1 +chr17 80750079 . T A 0 PASS DP=100;GPV=1;SPV=2.5245e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:32,27:11,15:21,12 +chr17 81125044 . GTGA G 0 PASS DP=95;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:10,5:1,3:9,2 +chr17 81140904 . TGGGGCCGTG T 0 PASS DP=40;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:14,3:7,1 +chr17 81339604 . A G 0 PASS DP=87;GPV=1;SPV=0.029105;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:22,8:13,6:9,2 +chr17 82969411 . G A 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,1:7,3 +chr18 918966 . C CT 0 PASS DP=77;GPV=1;SPV=6.5169e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:17,7:12,8 +chr18 1572078 . G A 0 PASS DP=49;GPV=1;SPV=0.096176;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,3:12,3 +chr18 3028219 . C CT 0 PASS DP=40;GPV=1;SPV=0.00022883;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,10:1,6:4,4 +chr18 3422679 . T TG 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1 +chr18 4510860 . TA T 0 PASS DP=42;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,6:9,5:11,1 +chr18 4550743 . TC T 0 PASS DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,3:13,2 +chr18 5541252 . C CA 0 PASS DP=48;GPV=1;SPV=0.01776;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,9:18,8:2,1 +chr18 6090593 . TACACACAC T 0 PASS DP=64;GPV=1;SPV=0.0029068;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:13,8:10,10 +chr18 6594714 . C T 0 PASS DP=69;GPV=1;SPV=7.6418e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:10,4:9,15 +chr18 6841208 . C T 0 PASS DP=19;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:0,0:7,2 +chr18 6937623 . A AAAATAAATAAAT 0 PASS DP=55;GPV=1;SPV=0.011208;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,7:6,3:7,4 +chr18 6991389 . CT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr18 7269333 . TAGAG T 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,5:5,3 +chr18 8264794 . G A 0 PASS DP=46;GPV=1;SPV=0.23569;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,5:7,3:8,2 +chr18 8488955 . TTGAATTCTATAAAATGTTCATACCC T 0 PASS DP=59;GPV=1;SPV=0.020157;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:11,6:12,6 +chr18 9404353 . A T 0 PASS DP=98;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:4,3:3,1:1,2 +chr18 9444134 . A C 0 PASS DP=28;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,5:0,1:0,4 +chr18 9468342 . CAA C 0 PASS DP=33;GPV=1;SPV=0.26795;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:13,5:4,1 +chr18 9912048 . G A 0 PASS DP=86;GPV=1;SPV=1.171e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:29,21:10,13:19,8 +chr18 9913971 . CG C 0 PASS DP=103;GPV=1;SPV=1.5311e-09;SS=2;SSC=88;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:29,27:15,13:14,14 +chr18 10150832 . C G 0 PASS DP=52;GPV=1;SPV=0.10901;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,7:16,2:15,5 +chr18 11685540 . CA C 0 PASS DP=35;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:15,6:4,1 +chr18 12461571 . GTACATACA G 0 PASS DP=48;GPV=1;SPV=0.04952;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5 +chr18 12525276 . C CAA 0 PASS DP=38;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,8:3,1 +chr18 12671637 . ACTTT A 0 PASS DP=46;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,8:9,3 +chr18 13505735 . A G 0 PASS DP=69;GPV=1;SPV=0.0093359;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,5:11,6 +chr18 14672212 . A G 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,1:4,6 +chr18 14672475 . G A 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr18 15392253 . A G 0 PASS DP=108;GPV=1;SPV=0.018528;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:38,3:21,5 +chr18 15410300 . C A 0 PASS DP=209;GPV=1;SPV=0.023883;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:106,20:37,9:69,11 +chr18 15469770 . A C 0 PASS DP=103;GPV=1;SPV=0.024523;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:15,5:28,2 +chr18 15479572 . C T 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr18 15483374 . G A 0 PASS DP=24;GPV=1;SPV=0.027668;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr18 15520726 . A C 0 PASS DP=169;GPV=1;SPV=0.020742;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:77,10:43,5:34,5 +chr18 15580219 . G A 0 PASS DP=156;GPV=1;SPV=0.022036;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:71,10:17,2:54,8 +chr18 15584416 . G T 0 PASS DP=38;GPV=1;SPV=0.10722;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:17,5:4,1 +chr18 15609223 . A T 0 PASS DP=84;GPV=1;SPV=0.044122;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:24,2:10,6 +chr18 15637983 . A G 0 PASS DP=44;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr18 15646675 . G A 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,1:6,3 +chr18 15649309 . G T 0 PASS DP=101;GPV=1;SPV=0.037368;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:39,1:2,5 +chr18 15666055 . T A 0 PASS DP=43;GPV=1;SPV=0.027357;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:5,4:12,1 +chr18 15675677 . G T 0 PASS DP=79;GPV=1;SPV=0.033861;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:29,8:9,1 +chr18 15703657 . G T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr18 15727935 . A T 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr18 15737152 . C G 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr18 15737631 . A G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr18 16053308 . A C 0 PASS DP=42;GPV=1;SPV=0.021659;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,4:9,6 +chr18 16360743 . T A 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:1,1:11,7 +chr18 16697190 . C T 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr18 18318482 . G A 0 PASS DP=51;GPV=1;SPV=0.0048811;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:3,3:17,5 +chr18 18419373 . C A 0 PASS DP=85;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:20,7:12,2 +chr18 18730629 . G T 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr18 18892542 . G C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1 +chr18 19397249 . G A 0 PASS DP=36;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,1:8,6 +chr18 20724838 . C G 0 PASS DP=273;GPV=1;SPV=0.028926;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:106,21:48,8:58,13 +chr18 20835814 . C T 0 PASS DP=171;GPV=1;SPV=0.0060998;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:67,16:40,12:27,4 +chr18 22232784 . CCATA C 0 PASS DP=81;GPV=1;SPV=0.074196;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,5:23,2:18,3 +chr18 22425547 . CT C 0 PASS DP=35;GPV=1;SPV=2.2853e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,8:0,7:0,1 +chr18 22605099 . G A 0 PASS DP=46;GPV=1;SPV=4.8216e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,17:0,7:10,10 +chr18 23076959 . A ATT 0 PASS DP=46;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,11:6,7:2,4 +chr18 23218612 . G C 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,3:11,1 +chr18 23371945 . T TG 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,8:3,4:3,4 +chr18 23455398 . CT C 0 PASS DP=37;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:2,1:11,7 +chr18 24592034 . A G 0 PASS DP=42;GPV=1;SPV=0.005394;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,2:3,8 +chr18 26117056 . G A 0 PASS DP=81;GPV=1;SPV=2.8289e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:10,15:11,7 +chr18 26309245 . ATTTTTTTT A 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,2:4,2 +chr18 26715724 . C CTT 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,5:4,4 +chr18 27155106 . AG A 0 PASS DP=53;GPV=1;SPV=0.38182;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:3,1:2,1 +chr18 28947408 . T C 0 PASS DP=80;GPV=1;SPV=1.0855e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:20,24:6,13:14,11 +chr18 29511579 . T A 0 PASS DP=74;GPV=1;SPV=0.024272;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:13,5:22,1 +chr18 29511757 . C A 0 PASS DP=51;GPV=1;SPV=0.0076703;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,3:8,4 +chr18 30549168 . C A 0 PASS DP=63;GPV=1;SPV=4.5589e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:12,9:9,6 +chr18 31121482 . A AT 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2 +chr18 31459826 . C T 0 PASS DP=66;GPV=1;SPV=3.4255e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,6:7,8 +chr18 31712287 . ATTTTTTT A 0 PASS DP=33;GPV=1;SPV=0.038078;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:8,4:5,3 +chr18 31934960 . A AAATAAATT 0 PASS DP=65;GPV=1;SPV=8.1216e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,14:8,7:10,7 +chr18 31989079 . A ATTTT 0 PASS DP=37;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,9:3,5:2,4 +chr18 32482155 . C T 0 PASS DP=25;GPV=1;SPV=0.014884;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,7:2,3:1,4 +chr18 32874122 . A G 0 PASS DP=72;GPV=1;SPV=8.4103e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:14,26:4,10:10,16 +chr18 33593258 . C CT 0 PASS DP=36;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,4:8,1 +chr18 33719224 . C T 0 PASS DP=66;GPV=1;SPV=0.016636;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:18,3:15,5 +chr18 34400477 . T A 0 PASS DP=41;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,2:9,3 +chr18 35931434 . G GA 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr18 37385061 . A T 0 PASS DP=73;GPV=1;SPV=3.8286e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,6:13,9 +chr18 37515175 . A C 0 PASS DP=97;GPV=1;SPV=2.9231e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:28,30:11,13:17,17 +chr18 39190202 . ATCTC A 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:17,4:4,1 +chr18 40103686 . T C 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:15,1:8,4 +chr18 40957409 . G A 0 PASS DP=66;GPV=1;SPV=2.951e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,11:11,7 +chr18 46574388 . T TACACACACACACACACAC 0 PASS DP=46;GPV=1;SPV=0.046254;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,3:9,3 +chr18 47967316 . CTTTCTT C 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,5:9,1 +chr18 48635327 . C CT 0 PASS DP=26;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,4:4,1 +chr18 50449675 . G T 0 PASS DP=90;GPV=1;SPV=0.022974;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:20,2:22,7 +chr18 50521728 . G GTA 0 PASS DP=28;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,3:4,1 +chr18 51406764 . C A 0 PASS DP=40;GPV=1;SPV=0.010989;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,10:1,6:0,4 +chr18 52738745 . G GT 0 PASS DP=59;GPV=1;SPV=2.0088e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:12,12:6,4 +chr18 53762026 . C CTTTT 0 PASS DP=40;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:6,7:3,1 +chr18 53810350 . G GTA 0 PASS DP=24;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:7,4:2,2 +chr18 55278562 . G A 0 PASS DP=74;GPV=1;SPV=0.050563;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:23,3:17,3 +chr18 55387512 . C T 0 PASS DP=83;GPV=1;SPV=2.8608e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:23,25:8,13:15,12 +chr18 56754289 . A G 0 PASS DP=52;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,3:14,1 +chr18 57474702 . T A 0 PASS DP=76;GPV=1;SPV=6.3755e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:14,11:12,8 +chr18 57627205 . CT C 0 PASS DP=39;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,9:3,6:8,3 +chr18 57761122 . A AAT 0 PASS DP=76;GPV=1;SPV=0.086656;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,4:18,2:8,2 +chr18 59390195 . ATAT A 0 PASS DP=49;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,5:4,2:4,3 +chr18 59491827 . C T 0 PASS DP=73;GPV=1;SPV=0.049892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:19,4:17,1 +chr18 59758967 . T TACACACACACACACACAC 0 PASS DP=59;GPV=1;SPV=0.04108;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:16,6:4,1 +chr18 61136306 . T C 0 PASS DP=80;GPV=1;SPV=6.0159e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:11,10:17,9 +chr18 61629966 . G A 0 PASS DP=85;GPV=1;SPV=1.1361e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,25:16,17:10,8 +chr18 62640070 . C T 0 PASS DP=29;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:11,1:3,3 +chr18 63963071 . CTCTTTCTTTCTT C 0 PASS DP=56;GPV=1;SPV=0.0091926;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,11:1,3:14,8 +chr18 64148466 . G A 0 PASS DP=83;GPV=1;SPV=5.007e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:18,10:9,14 +chr18 65357014 . CAAAAA C 0 PASS DP=28;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:4,5:4,1 +chr18 65713628 . AGG A 0 PASS DP=40;GPV=1;SPV=0.017739;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,5:4,4 +chr18 66455795 . T G 0 PASS DP=52;GPV=1;SPV=0.0066378;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,1:16,6 +chr18 68007627 . T G 0 PASS DP=61;GPV=1;SPV=0.01632;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3 +chr18 68199591 . CT C 0 PASS DP=56;GPV=1;SPV=0.00029312;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,11:5,8:5,3 +chr18 68761432 . G A 0 PASS DP=82;GPV=1;SPV=7.8076e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:13,7:16,11 +chr18 70930266 . T C 0 PASS DP=36;GPV=1;SPV=0.025362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,1:4,6 +chr18 71592609 . C CAA 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,5:2,1 +chr18 71650624 . T TCAACAA 0 PASS DP=62;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:20,8:6,4 +chr18 72185919 . T TA 0 PASS DP=63;GPV=1;SPV=0.00094142;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,13:13,8:8,5 +chr18 72536935 . T C 0 PASS DP=57;GPV=1;SPV=0.00070139;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:14,8:9,7 +chr18 73293503 . C CA 0 PASS DP=41;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,10:4,9:2,1 +chr18 74569060 . C T 0 PASS DP=83;GPV=1;SPV=2.3533e-10;SS=2;SSC=96;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:17,25:8,9:9,16 +chr18 75999618 . G A 0 PASS DP=78;GPV=1;SPV=9.5082e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,14:11,4 +chr18 76611977 . G C 0 PASS DP=65;GPV=1;SPV=0.075;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:21,1:4,2 +chr18 76641242 . T C 0 PASS DP=79;GPV=1;SPV=0.047546;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,4:16,4 +chr18 76642774 . T TTTATTATTA 0 PASS DP=53;GPV=1;SPV=0.0059827;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,11:5,6:8,5 +chr18 77624277 . TAAAAAAAAAA T 0 PASS DP=28;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,3:4,2 +chr18 78321767 . G A 0 PASS DP=81;GPV=1;SPV=1.0069e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:20,23:11,10:9,13 +chr18 78416496 . T A 0 PASS DP=74;GPV=1;SPV=0.011905;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,3:0,2:0,1 +chr18 78599589 . A G 0 PASS DP=89;GPV=1;SPV=5.8873e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:24,26:8,11:16,15 +chr18 78917262 . T C 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr18 78953544 . A T 0 PASS DP=70;GPV=1;SPV=0.015361;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:16,5:19,3 +chr18 78953545 . A C 0 PASS DP=75;GPV=1;SPV=0.043461;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:15,6:22,3 +chr18 78995311 . G A 0 PASS DP=91;GPV=1;SPV=3.1431e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:13,8:12,13 +chr18 79482090 . T C 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:0,5:4,3 +chr18 79828951 . G A 0 PASS DP=29;GPV=1;SPV=0.0046784;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:4,6:2,5 +chr18 79831580 . A G 0 PASS DP=38;GPV=1;SPV=0.0065388;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,6:4,2 +chr19 108091 . A C 0 PASS DP=47;GPV=1;SPV=0.00060516;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:10,11:0,1 +chr19 720442 . G A 0 PASS DP=48;GPV=1;SPV=0.0050929;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:15,3:6,12 +chr19 760364 . C CT 0 PASS DP=28;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3 +chr19 1280915 . C T 0 PASS DP=99;GPV=1;SPV=3.4904e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:17,8:15,7 +chr19 1290639 . G A 0 PASS DP=100;GPV=1;SPV=3.4855e-12;SS=2;SSC=114;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:19,26:12,16:7,10 +chr19 1538695 . C T 0 PASS DP=35;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,5:3,3:2,2 +chr19 1727959 . G A 0 PASS DP=66;GPV=1;SPV=0.0017573;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:14,13:17,6 +chr19 2683486 . T C 0 PASS DP=63;GPV=1;SPV=8.8646e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:7,9:14,4 +chr19 3169661 . CT C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1 +chr19 3299611 . T TTTC 0 PASS DP=38;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,9:5,4:9,5 +chr19 3354209 . C CTT 0 PASS DP=24;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr19 3385570 . GTTGT G 0 PASS DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,6:5,1 +chr19 3719982 . G A 0 PASS DP=63;GPV=1;SPV=0.0006045;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:6,2:15,7 +chr19 4043725 . C A 0 PASS DP=28;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:0,0:7,2 +chr19 5057705 . G A 0 PASS DP=72;GPV=1;SPV=5.0971e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:12,9:5,11 +chr19 5162315 . G A 0 PASS DP=81;GPV=1;SPV=2.7433e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:13,10:14,9 +chr19 6235148 . A T 0 PASS DP=81;GPV=1;SPV=9.3033e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:15,9:10,10 +chr19 6814667 . C T 0 PASS DP=50;GPV=1;SPV=0.016212;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,2:12,6 +chr19 7060204 . T C 0 PASS DP=185;GPV=1;SPV=0.039151;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:44,9:50,10 +chr19 7202996 . G GT 0 PASS DP=41;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,8:2,7:4,1 +chr19 7229324 . G GGATA 0 PASS DP=33;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,6:6,4:1,2 +chr19 7457353 . CTT C 0 PASS DP=31;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,6:4,1 +chr19 8037374 . C T 0 PASS DP=47;GPV=1;SPV=0.03876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3 +chr19 8331980 . CTTTTTT C 0 PASS DP=31;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:8,3:4,3 +chr19 8767852 . C T 0 PASS DP=503;GPV=1;SPV=0.026761;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:285:243,42:131,22:112,20 +chr19 8777797 . C G 0 PASS DP=36;GPV=1;SPV=0.2538;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:1,0:21,4 +chr19 8781025 . A C 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr19 8988006 . ATT A 0 PASS DP=41;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:6,3:10,2 +chr19 9938034 . CT C 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr19 10190765 . AAAAATAAAAT A 0 PASS DP=56;GPV=1;SPV=0.038795;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,4:11,4 +chr19 12845411 . CA C 0 PASS DP=37;GPV=1;SPV=0.015249;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:12,9:4,1 +chr19 12981782 . CT C 0 PASS DP=40;GPV=1;SPV=0.019439;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,2:7,4 +chr19 13198576 . C T 0 PASS DP=32;GPV=1;SPV=0.028846;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:2,2:2,3 +chr19 13260331 . TA T 0 PASS DP=61;GPV=1;SPV=0.33319;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,4:11,2:15,2 +chr19 14314098 . A ACACACACAGTTTCACATTCACACCCCATACGCT 0 PASS DP=28;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4 +chr19 14759502 . TA T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1 +chr19 14866670 . C CAA 0 PASS DP=43;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,10:11,9:1,1 +chr19 15011734 . C CA 0 PASS DP=58;GPV=1;SPV=0.0087248;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,11:14,9:4,2 +chr19 15595616 . T C 0 PASS DP=83;GPV=1;SPV=5.007e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:13,13:14,11 +chr19 16341955 . C CA 0 PASS DP=53;GPV=1;SPV=0.0060117;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,14:8,12:9,2 +chr19 16352764 . CT C 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr19 16432591 . TACAAATAC T 0 PASS DP=63;GPV=1;SPV=0.05251;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,4:8,2:7,2 +chr19 16474897 . C CA 0 PASS DP=58;GPV=1;SPV=0.0083443;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,13:11,9:8,4 +chr19 16767167 . CTT C 0 PASS DP=27;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,7:2,2 +chr19 16888396 . G GTTTTTTTTTTT 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr19 16901298 . C T 0 PASS DP=102;GPV=1;SPV=5.3362e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:32,34:20,17:12,17 +chr19 17430632 . T G 0 PASS DP=34;GPV=1;SPV=0.0069381;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:3,5:9,3 +chr19 17430636 . T G 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,3:10,3 +chr19 17584067 . C T 0 PASS DP=66;GPV=1;SPV=2.5999e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:15,10:7,6 +chr19 17918501 . G A 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr19 18529091 . C CAA 0 PASS DP=49;GPV=1;SPV=0.013698;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,5:5,4 +chr19 18936313 . C CAAAA 0 PASS DP=52;GPV=1;SPV=0.0040291;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:11,4:6,3 +chr19 18960837 . A AT 0 PASS DP=41;GPV=1;SPV=0.02037;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:3,3:6,2 +chr19 19687492 . AATATTTATCTATTACATTAATAT A 0 PASS DP=51;GPV=1;SPV=0.042521;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr19 19790844 . A C 0 PASS DP=47;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:1,1:2,1 +chr19 20743548 . A AATAT 0 PASS DP=22;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,3:2,2 +chr19 20753022 . C T 0 PASS DP=90;GPV=1;SPV=2.6571e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:30,25:13,12:17,13 +chr19 21011659 . T TACACACAC 0 PASS DP=35;GPV=1;SPV=0.00095261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,9:1,6:1,3 +chr19 22040397 . G A 0 PASS DP=105;GPV=1;SPV=3.3634e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:32,29:20,20:12,9 +chr19 22107631 . T C 0 PASS DP=28;GPV=1;SPV=0.29579;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:11,2:5,1 +chr19 22763927 . G A 0 PASS DP=24;GPV=1;SPV=0.046664;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,3:7,4 +chr19 22881134 . C CTTTTTTT 0 PASS DP=44;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,9:6,4:11,5 +chr19 23004422 . T TAAAAAAA 0 PASS DP=37;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:8,3:7,2 +chr19 26881424 . G C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,1:6,3 +chr19 27440028 . T A 0 PASS DP=68;GPV=1;SPV=2.6364e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:14,10:6,8 +chr19 27605591 . A C 0 PASS DP=82;GPV=1;SPV=7.5907e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,20:15,9:15,11 +chr19 29059312 . TC T 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr19 29646926 . C CT 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr19 29744609 . AC A 0 PASS DP=72;GPV=1;SPV=0.04115;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:17,4:17,1 +chr19 30271299 . C CT 0 PASS DP=35;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:7,3:6,2 +chr19 31226977 . C CT 0 PASS DP=29;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:10,3:2,3 +chr19 31958446 . G A 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,4:11,1 +chr19 32019272 . A G 0 PASS DP=45;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,4:10,2:5,2 +chr19 32190561 . G GTCTCTC 0 PASS DP=44;GPV=1;SPV=0.0089185;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,9:7,3:10,6 +chr19 32515023 . C CT 0 PASS DP=59;GPV=1;SPV=0.035232;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:21,10:8,4 +chr19 33851187 . T G 0 PASS DP=52;GPV=1;SPV=0.0024472;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,6:5,4 +chr19 35374030 . AGAAGGAAGGAAGGAAG A 0 PASS DP=39;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:8,3:4,3 +chr19 35973022 . AACACAC A 0 PASS DP=44;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,10:11,5:7,5 +chr19 36391473 . T A 0 PASS DP=63;GPV=1;SPV=0.019656;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,5:9,3:4,2 +chr19 37269045 . T TC 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1 +chr19 37289000 . G C 0 PASS DP=276;GPV=1;SPV=0.016422;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:120,24:71,9:49,15 +chr19 37857275 . A G 0 PASS DP=68;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:1,4:0,2:1,2 +chr19 38138910 . A AAAAAAAAAAAAACAAAAAC 0 PASS DP=36;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:5,2:9,2 +chr19 38920950 . C T 0 PASS DP=61;GPV=1;SPV=0.097509;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,5:9,3:10,2 +chr19 39512009 . CTT C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr19 39775772 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,6:3,5:1,1 +chr19 40163148 . CGT C 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,3:5,3 +chr19 40692926 . C T 0 PASS DP=74;GPV=1;SPV=5.174e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:16,8:9,5 +chr19 40785791 . C T 0 PASS DP=79;GPV=1;SPV=6.3605e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,23:16,13:9,10 +chr19 40834261 . CCCAGCTACTCGGG C 0 PASS DP=63;GPV=1;SPV=0.0011495;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,7:13,6 +chr19 40834276 . G A 0 PASS DP=61;GPV=1;SPV=0.00035192;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,7:9,6 +chr19 40834279 . TGAG T 0 PASS DP=62;GPV=1;SPV=0.00057944;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,7:10,5 +chr19 40845531 . G T 0 PASS DP=83;GPV=1;SPV=2.1529e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:11,10:13,10 +chr19 43155799 . CA C 0 PASS DP=34;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,7:5,1 +chr19 43440230 . TA T 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,4:8,1 +chr19 44180086 . C CA 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,6:9,1 +chr19 44532564 . GA G 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:4,5:0,2 +chr19 45021573 . C CT 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,3:11,2 +chr19 45477031 . C CA 0 PASS DP=51;GPV=1;SPV=0.0016292;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,10:9,9:8,1 +chr19 46406261 . CTT C 0 PASS DP=37;GPV=1;SPV=0.009224;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,10:6,5:4,5 +chr19 46668014 . CAAA C 0 PASS DP=39;GPV=1;SPV=0.0058774;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,9:4,2 +chr19 47265987 . T C 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr19 47645942 . A T 0 PASS DP=82;GPV=1;SPV=6.6772e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:24,27:14,14:10,13 +chr19 47731785 . A AT 0 PASS DP=59;GPV=1;SPV=8.0727e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,14:11,10:8,4 +chr19 47748446 . C T 0 PASS DP=79;GPV=1;SPV=0.00041185;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:12,4:20,8 +chr19 47774924 . A AT 0 PASS DP=41;GPV=1;SPV=0.019715;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,5:9,4 +chr19 47824990 . A ATT 0 PASS DP=41;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:14,3:4,3 +chr19 47987760 . G A 0 PASS DP=69;GPV=1;SPV=4.9568e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,20:8,9:5,11 +chr19 48028497 . CTTTT C 0 PASS DP=25;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,6:3,3 +chr19 49346182 . A T 0 PASS DP=55;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:9,5:20,1 +chr19 49410486 . C CT 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:8,8:2,4 +chr19 49885451 . A C 0 PASS DP=52;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:3,1:4,1 +chr19 50078405 . G C 0 PASS DP=56;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:2,1:5,1 +chr19 50182988 . T TTCCCTCCCTCCC 0 PASS DP=23;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:0,0:8,4 +chr19 50520630 . G GA 0 PASS DP=58;GPV=1;SPV=0.0061831;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:10,8:5,3 +chr19 50816955 . T TAAA 0 PASS DP=36;GPV=1;SPV=0.090923;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,3:8,3 +chr19 50937767 . CTCCTTTCTTTCTT C 0 PASS DP=57;GPV=1;SPV=0.036807;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:7,3:16,4 +chr19 51189641 . T TATATATATATATATATAA 0 PASS DP=40;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:7,2:5,2 +chr19 51714695 . T TAAAAAAA 0 PASS DP=19;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:3,3:0,2 +chr19 51795508 . T C 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4 +chr19 53916342 . GGTACCAAGGCCCAGAATTGCATAGAGAGTTGCCCATAA G 0 PASS DP=65;GPV=1;SPV=0.033591;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:16,5:15,5 +chr19 53924195 . G T 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:3,7:5,6 +chr19 54002284 . G T 0 PASS DP=47;GPV=1;SPV=0.025884;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:13,4:7,9 +chr19 54012556 . C T 0 PASS DP=58;GPV=1;SPV=8.4872e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:9,9:4,7 +chr19 54848277 . G C 0 PASS DP=169;GPV=1;SPV=0.00012294;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:68,18:27,8:41,10 +chr19 54995148 . T TA 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,7:4,3 +chr19 55033047 . CGTGTT C 0 PASS DP=29;GPV=1;SPV=0.074501;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:3,4:11,3 +chr19 55547071 . C A 0 PASS DP=46;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,2:5,2 +chr19 55953792 . C CT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr19 55962955 . C T 0 PASS DP=90;GPV=1;SPV=1.9149e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:16,12:11,8 +chr19 56216585 . CTTCCTTTT C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr19 56710871 . G T 0 PASS DP=76;GPV=1;SPV=1.5354e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:15,12:13,8 +chr19 57505106 . T C 0 PASS DP=82;GPV=1;SPV=0.040948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:10,4:23,2 +chr19 58119844 . T G 0 PASS DP=46;GPV=1;SPV=0.011327;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,4:10,5 +chr2 837627 . G GTGTATATATATATA 0 PASS DP=56;GPV=1;SPV=0.079204;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:13,4:14,2 +chr2 914985 . A G 0 PASS DP=41;GPV=1;SPV=0.011343;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,8:9,2 +chr2 1009653 . T C 0 PASS DP=40;GPV=1;SPV=0.046139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,2:6,4 +chr2 1009654 . G A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,2:4,2 +chr2 1279081 . CCT C 0 PASS DP=62;GPV=1;SPV=0.13146;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,2:17,3 +chr2 1279091 . T C 0 PASS DP=61;GPV=1;SPV=0.14299;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,2:17,3 +chr2 1387475 . T A 0 PASS DP=83;GPV=1;SPV=2.046e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:12,8:16,12 +chr2 1480776 . G T 0 PASS DP=48;GPV=1;SPV=0.048386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:17,2:7,4 +chr2 2034291 . T C 0 PASS DP=38;GPV=1;SPV=0.21569;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:1,2:18,1 +chr2 2716686 . G A 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1 +chr2 3032681 . C T 0 PASS DP=78;GPV=1;SPV=2.7895e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:12,4:17,13 +chr2 3075648 . C CTT 0 PASS DP=46;GPV=1;SPV=0.020447;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,12:11,10:4,2 +chr2 3531025 . G GTAT 0 PASS DP=69;GPV=1;SPV=0.025567;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,11:19,8:9,3 +chr2 3550142 . T TAA 0 PASS DP=33;GPV=1;SPV=0.059881;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,2:7,4 +chr2 4260644 . TTA T 0 PASS DP=60;GPV=1;SPV=0.0087152;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,3:11,4 +chr2 4260661 . TTA T 0 PASS DP=58;GPV=1;SPV=0.059705;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:11,1:10,3 +chr2 4382243 . C T 0 PASS DP=71;GPV=1;SPV=2.2016e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:26,23:19,11:7,12 +chr2 4612518 . T TACACAC 0 PASS DP=32;GPV=1;SPV=0.069923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,5:5,3 +chr2 5774635 . C T 0 PASS DP=55;GPV=1;SPV=2.7562e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,21:9,12:5,9 +chr2 5989357 . C A 0 PASS DP=78;GPV=1;SPV=2.9573e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:18,26:9,15:9,11 +chr2 7240598 . TTTTA T 0 PASS DP=43;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,4:2,1:6,3 +chr2 7937979 . A G 0 PASS DP=55;GPV=1;SPV=0.37283;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,4:8,2:11,2 +chr2 7937980 . TC T 0 PASS DP=55;GPV=1;SPV=0.30799;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,4:7,2:11,2 +chr2 9183583 . GA G 0 PASS DP=57;GPV=1;SPV=0.24882;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:29,2:7,2 +chr2 9193871 . TTC T 0 PASS DP=51;GPV=1;SPV=0.013481;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,2:12,5 +chr2 10297146 . CTT C 0 PASS DP=27;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,3:3,3 +chr2 11463263 . TTAC T 0 PASS DP=76;GPV=1;SPV=1.2213e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:28,26:16,12:12,14 +chr2 13288665 . A C 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:8,10:5,4 +chr2 13891576 . C CT 0 PASS DP=20;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr2 14159206 . A C 0 PASS DP=63;GPV=1;SPV=3.969e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:2,11:12,5 +chr2 14686910 . G GAC 0 PASS DP=41;GPV=1;SPV=0.0034481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2 +chr2 14843581 . CA C 0 PASS DP=82;GPV=1;SPV=0.059869;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:28,3:14,2 +chr2 14852201 . T A 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:6,3:19,1 +chr2 15528880 . T A 0 PASS DP=29;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:2,1:4,1 +chr2 17622506 . AAAAGAAAGAAAG A 0 PASS DP=42;GPV=1;SPV=0.35366;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:11,1:16,2 +chr2 21808890 . G T 0 PASS DP=66;GPV=1;SPV=2.3942e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,23:9,9:3,14 +chr2 21816173 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:4,7:3,5 +chr2 23120689 . G A 0 PASS DP=83;GPV=1;SPV=0.0071577;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:18,10:13,8:5,2 +chr2 23881360 . CTT C 0 PASS DP=30;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,5:10,4:2,1 +chr2 25098831 . A ATT 0 PASS DP=41;GPV=1;SPV=0.025988;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,1:7,6 +chr2 26935691 . CA C 0 PASS DP=39;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:4,6:1,3 +chr2 26943540 . G C 0 PASS DP=78;GPV=1;SPV=7.2192e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:10,9:22,10 +chr2 27866737 . C G 0 PASS DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,4:9,11 +chr2 28100462 . C CA 0 PASS DP=46;GPV=1;SPV=0.021382;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,7:16,6:2,1 +chr2 28837742 . CT C 0 PASS DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,9:4,2 +chr2 28880560 . C CT 0 PASS DP=35;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:0,3:11,9 +chr2 29540592 . TAAA T 0 PASS DP=59;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:13,2:18,2 +chr2 30304930 . G C 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,3:3,4 +chr2 31190121 . C CTTTGT 0 PASS DP=40;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,4:9,4 +chr2 33064021 . T G 0 PASS DP=81;GPV=1;SPV=9.2047e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:14,11:12,10 +chr2 34482612 . G A 0 PASS DP=76;GPV=1;SPV=5.6651e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:12,11:11,11 +chr2 35126335 . C T 0 PASS DP=52;GPV=1;SPV=0.002136;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:5,5:16,6 +chr2 35865373 . A T 0 PASS DP=55;GPV=1;SPV=0.012866;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,7:8,4 +chr2 36165831 . T TTGTGTGTGTGTGTGTGTG 0 PASS DP=49;GPV=1;SPV=0.03159;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,6:6,3 +chr2 36209313 . A ATTTTTTT 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr2 36715554 . A T 0 PASS DP=73;GPV=1;SPV=6.2617e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:9,8:12,12 +chr2 43189854 . CA C 0 PASS DP=44;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,14:5,12:4,2 +chr2 43272623 . C CT 0 PASS DP=35;GPV=1;SPV=0.036457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,5:6,2 +chr2 43617891 . C CT 0 PASS DP=46;GPV=1;SPV=0.0012136;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:7,11:4,2 +chr2 43635551 . G A 0 PASS DP=65;GPV=1;SPV=0.03453;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:4,3:19,7 +chr2 43971485 . T TAAAAAAAAA 0 PASS DP=28;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:3,3:5,1 +chr2 44304813 . A AT 0 PASS DP=36;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:7,2:6,3 +chr2 44974693 . C CT 0 PASS DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,7:5,1 +chr2 45689901 . C CA 0 PASS DP=37;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,9:3,6:6,3 +chr2 45744576 . T TCC 0 PASS DP=52;GPV=1;SPV=0.0013497;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,10:6,3:7,7 +chr2 46203576 . CT C 0 PASS DP=32;GPV=1;SPV=0.19804;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:14,3:4,2 +chr2 46285615 . AT A 0 PASS DP=41;GPV=1;SPV=0.0023325;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,4:9,5 +chr2 47393498 . C T 0 PASS DP=65;GPV=1;SPV=0.00086667;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:18,8:10,6 +chr2 48800016 . A C 0 PASS DP=81;GPV=1;SPV=1.3321e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:14,5:11,13 +chr2 49779401 . C T 0 PASS DP=70;GPV=1;SPV=7.6188e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:10,13:9,5 +chr2 49868843 . A G 0 PASS DP=80;GPV=1;SPV=2.6281e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,24:15,13:13,11 +chr2 50093473 . G GA 0 PASS DP=29;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:5,6:3,3 +chr2 50516103 . T C 0 PASS DP=70;GPV=1;SPV=1.8015e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:10,9:15,12 +chr2 51495069 . ATGTG A 0 PASS DP=28;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:10,4:1,0 +chr2 51716479 . GTATATA G 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,1:3,3 +chr2 52782338 . G A 0 PASS DP=65;GPV=1;SPV=0.00087744;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,2:11,7 +chr2 54406048 . T C 0 PASS DP=70;GPV=1;SPV=9.7905e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,21:12,15:12,6 +chr2 55597623 . A AAAACAAAC 0 PASS DP=64;GPV=1;SPV=0.021526;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,13:12,8:14,5 +chr2 55619937 . C CA 0 PASS DP=27;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:8,4:4,2 +chr2 56519661 . C CAT 0 PASS DP=58;GPV=1;SPV=0.13128;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,5:13,3:14,2 +chr2 56976616 . AT A 0 PASS DP=74;GPV=1;SPV=2.086e-06;SS=2;SSC=56;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:14,9:9,10 +chr2 57330546 . G T 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,7:6,4 +chr2 59081779 . T A 0 PASS DP=66;GPV=1;SPV=0.028868;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:15,1:19,6 +chr2 59382419 . A T 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1 +chr2 60208082 . TC T 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,1:15,3 +chr2 60851863 . A C 0 PASS DP=64;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,2:2,1:1,1 +chr2 61515938 . C A 0 PASS DP=30;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,5:1,3:2,2 +chr2 61515940 . CA C 0 PASS DP=33;GPV=1;SPV=0.12308;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,7:2,3:3,4 +chr2 61799695 . A AAAAAAAAT 0 PASS DP=19;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,1:2,3 +chr2 62629632 . C T 0 PASS DP=25;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:8,3:2,1 +chr2 63204336 . C CT 0 PASS DP=31;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,4:5,2 +chr2 63338569 . AATATAT A 0 PASS DP=19;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,1:4,1 +chr2 63686847 . AGTGCTGAAAAAACTGTATATCCATATTCAGATCCACATTCT A 0 PASS DP=62;GPV=1;SPV=0.036677;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:12,3:16,2 +chr2 63951206 . C CT 0 PASS DP=51;GPV=1;SPV=0.035026;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4 +chr2 64025689 . TTATATATATATATATATATATATA T 0 PASS DP=46;GPV=1;SPV=0.0091605;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,4:11,2 +chr2 64191486 . CCTTTCTTT C 0 PASS DP=47;GPV=1;SPV=0.018961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:3,5:14,3 +chr2 64273188 . A T 0 PASS DP=73;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,6:11,4:10,2 +chr2 64376031 . C T 0 PASS DP=54;GPV=1;SPV=0.13783;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,1:13,4 +chr2 64376137 . T TACC 0 PASS DP=71;GPV=1;SPV=0.13649;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,5:18,4:24,1 +chr2 65119842 . A C 0 PASS DP=41;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,4:4,1:9,3 +chr2 65600861 . C A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,2:5,2 +chr2 66775102 . A T 0 PASS DP=50;GPV=1;SPV=0.022424;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:8,5:12,4 +chr2 67582657 . A G 0 PASS DP=51;GPV=1;SPV=0.030178;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,15:12,6:6,9 +chr2 68991108 . TAAAA T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chr2 68991113 . A C 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,3:13,1 +chr2 68998749 . AGAGATAGAGAGAGG A 0 PASS DP=50;GPV=1;SPV=0.0028455;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:10,7:5,3 +chr2 69433085 . GGTTGCAGTGAGCCGAGATC G 0 PASS DP=37;GPV=1;SPV=0.00053043;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:1,2:7,12 +chr2 69662992 . C CT 0 PASS DP=31;GPV=1;SPV=0.014049;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1 +chr2 69924748 . CT C 0 PASS DP=71;GPV=1;SPV=5.5219e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:20,9:7,9 +chr2 69924750 . C A 0 PASS DP=71;GPV=1;SPV=4.2622e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:15,9:8,11 +chr2 69941863 . TAC T 0 PASS DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,2:20,2 +chr2 70056604 . C CA 0 PASS DP=33;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,8:1,5:2,3 +chr2 70128634 . C CTTTTTTT 0 PASS DP=50;GPV=1;SPV=0.0057892;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,7:8,1 +chr2 70197453 . C CTTTT 0 PASS DP=30;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:6,2:8,2 +chr2 70338595 . ATATAT A 0 PASS DP=73;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,2:2,1:3,1 +chr2 71441110 . CT C 0 PASS DP=21;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,3:5,1 +chr2 72542962 . T C 0 PASS DP=76;GPV=1;SPV=1.9601e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:9,10:12,5 +chr2 73047219 . TAAAAAAAAAAAA T 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,3:10,1 +chr2 73978483 . C G 0 PASS DP=63;GPV=1;SPV=4.5589e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,6:13,9 +chr2 74474791 . C T 0 PASS DP=102;GPV=1;SPV=1.7519e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:32,26:17,9:15,17 +chr2 76332700 . G A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr2 77721081 . C T 0 PASS DP=85;GPV=1;SPV=1.9327e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:27,26:13,14:14,12 +chr2 77866354 . TA T 0 PASS DP=82;GPV=1;SPV=0.00022812;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:16,3:17,10 +chr2 77955960 . ATCT A 0 PASS DP=77;GPV=1;SPV=1.8089e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:13,8:10,9 +chr2 77955964 . A C 0 PASS DP=78;GPV=1;SPV=3.6545e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:13,9:11,7 +chr2 80075621 . T TTATAAAAA 0 PASS DP=30;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,5:3,1:5,4 +chr2 80123447 . G GA 0 PASS DP=38;GPV=1;SPV=0.0087276;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:10,8:1,1 +chr2 80192627 . A G 0 PASS DP=62;GPV=1;SPV=0.00016426;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:13,7:8,5 +chr2 80192628 . GCGATTCTC G 0 PASS DP=64;GPV=1;SPV=0.00038475;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:15,6:8,5 +chr2 80832317 . CT C 0 PASS DP=28;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:7,6:2,1 +chr2 80857039 . G A 0 PASS DP=81;GPV=1;SPV=1.6156e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:10,10:12,9 +chr2 81034978 . C A 0 PASS DP=72;GPV=1;SPV=4.405e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:16,7:8,15 +chr2 81962147 . CA C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1 +chr2 82952571 . C G 0 PASS DP=75;GPV=1;SPV=1.5282e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:5,9:19,13 +chr2 83217571 . C CTTTT 0 PASS DP=41;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:5,8:3,3:2,5 +chr2 84598187 . CT C 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:8,1:15,3 +chr2 85298191 . C CAAAAAAAAAAA 0 PASS DP=17;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,4:0,0 +chr2 85329996 . CT C 0 PASS DP=35;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,7:7,6:5,1 +chr2 85364804 . C CAT 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,3:3,1 +chr2 86041192 . C T 0 PASS DP=48;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,5:6,1:8,4 +chr2 86217684 . T TTTTTTTTTTC 0 PASS DP=58;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,4:11,1:12,3 +chr2 87345542 . G C 0 PASS DP=52;GPV=1;SPV=0.019537;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:15,4:7,7 +chr2 87366406 . C A 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:13,3:4,2 +chr2 87386273 . T A 0 PASS DP=201;GPV=1;SPV=0.032113;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:99,24:43,14:56,10 +chr2 87395392 . G T 0 PASS DP=64;GPV=1;SPV=0.011049;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:15,3:15,5 +chr2 87405081 . G A 0 PASS DP=92;GPV=1;SPV=0.0052983;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,13:19,9:23,4 +chr2 87414607 . A C 0 PASS DP=51;GPV=1;SPV=0.13285;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:23,3:9,4 +chr2 87415391 . G A 0 PASS DP=46;GPV=1;SPV=0.10396;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:18,3:7,2 +chr2 87419569 . T C 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3 +chr2 87515462 . T C 0 PASS DP=67;GPV=1;SPV=0.032693;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:17,4:16,2 +chr2 87551150 . T C 0 PASS DP=53;GPV=1;SPV=0.013346;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:9,5:10,8 +chr2 87650939 . T G 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr2 87737292 . G A 0 PASS DP=57;GPV=1;SPV=0.043188;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:6,3:17,7 +chr2 87865551 . C G 0 PASS DP=68;GPV=1;SPV=0.030755;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,3:14,7 +chr2 87960257 . A C 0 PASS DP=60;GPV=1;SPV=0.0044438;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,7:13,8 +chr2 88463345 . G A 0 PASS DP=30;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,3:0,1 +chr2 88487414 . AT A 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,7:5,2 +chr2 88625332 . TACAC T 0 PASS DP=50;GPV=1;SPV=0.0059827;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,11:5,4:8,7 +chr2 89760247 . C CTT 0 PASS DP=135;GPV=1;SPV=0.0026065;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:54,19:30,14:24,5 +chr2 89878508 . T A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,3:13,1 +chr2 89878509 . T TTTAC 0 PASS DP=66;GPV=1;SPV=0.028145;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,3:16,3 +chr2 90235961 . C T 0 PASS DP=93;GPV=1;SPV=0.065679;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:22,1:32,5 +chr2 90358675 . C G 0 PASS DP=93;GPV=1;SPV=0.04667;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:17,2:19,7 +chr2 90392157 . T C 0 PASS DP=3014;GPV=1;SPV=0.034818;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1677:1439,182:1214,142:225,40 +chr2 90397513 . G A 0 PASS DP=3904;GPV=1;SPV=0.018625;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2205:1942,262:1601,221:341,41 +chr2 90397514 . G A 0 PASS DP=4009;GPV=1;SPV=0.034286;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2234:1969,263:1596,229:373,34 +chr2 90397522 . T A 0 PASS DP=4450;GPV=1;SPV=0.0060816;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2458:2156,300:1717,251:439,49 +chr2 91472787 . TAAA T 0 PASS DP=291;GPV=1;SPV=0.031471;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:132,24:72,15:60,9 +chr2 91514668 . G T 0 PASS DP=115;GPV=1;SPV=0.023535;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:21,5:36,8 +chr2 91518504 . T C 0 PASS DP=72;GPV=1;SPV=0.12575;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:19,2:26,4 +chr2 91548974 . A AAC 0 PASS DP=139;GPV=1;SPV=0.0099619;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:57,17:23,9:34,8 +chr2 91659987 . G A 0 PASS DP=109;GPV=1;SPV=0.032622;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:25,2:30,7 +chr2 91675456 . A G 0 PASS DP=74;GPV=1;SPV=0.0039629;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:16,5:16,9 +chr2 91776604 . ATG A 0 PASS DP=36;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:5,5:4,3 +chr2 91872488 . A T 0 PASS DP=89;GPV=1;SPV=0.022683;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,10:18,2 +chr2 91988869 . GAA G 0 PASS DP=73;GPV=1;SPV=0.046336;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,11:17,9:11,2 +chr2 92111507 . C A 0 PASS DP=241;GPV=1;SPV=2.5363e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:123,19:76,12:47,7 +chr2 92199111 . G T 0 PASS DP=334;GPV=1;SPV=0.013223;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:172,20:97,9:75,11 +chr2 92233793 . G C 0 PASS DP=355;GPV=1;SPV=0.0015939;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:156,28:34,3:122,25 +chr2 92272955 . T G 0 PASS DP=50;GPV=1;SPV=0.15322;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,3:15,2 +chr2 92273398 . A G 0 PASS DP=173;GPV=1;SPV=0.017;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:89,10:52,9:37,1 +chr2 92308713 . C T 0 PASS DP=79;GPV=1;SPV=0.060821;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:28,1:13,4 +chr2 92396225 . G C 0 PASS DP=109;GPV=1;SPV=0.045403;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:6,2:46,8 +chr2 92416782 . C A 0 PASS DP=119;GPV=1;SPV=0.0089064;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:51,9:29,8:22,1 +chr2 92421752 . T C 0 PASS DP=267;GPV=1;SPV=0.046042;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:134,16:117,13:17,3 +chr2 92426580 . C G 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,3:7,1 +chr2 92443667 . A C 0 PASS DP=69;GPV=1;SPV=0.012509;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:16,4:19,5 +chr2 92545721 . G C 0 PASS DP=104;GPV=1;SPV=0.0080873;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:23,5:19,1 +chr2 92551876 . C A 0 PASS DP=464;GPV=1;SPV=0.0081141;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:215,48:189,43:26,5 +chr2 92588273 . A T 0 PASS DP=75;GPV=1;SPV=0.088876;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:36,2:6,3 +chr2 92619739 . C T 0 PASS DP=137;GPV=1;SPV=0.0016152;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:56,14:52,13:4,1 +chr2 92620212 . T C 0 PASS DP=137;GPV=1;SPV=0.0070779;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:53,10:12,9:41,1 +chr2 92622459 . TC T 0 PASS DP=61;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:33,4:3,0 +chr2 92750551 . G C 0 PASS DP=266;GPV=1;SPV=0.043608;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:124,24:70,12:54,12 +chr2 92771321 . C G 0 PASS DP=329;GPV=1;SPV=0.0041606;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:152,26:19,5:133,21 +chr2 92822653 . A T 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:25,3:3,1 +chr2 92866630 . C T 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,2:10,3 +chr2 92930378 . A G 0 PASS DP=222;GPV=1;SPV=0.046865;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:115,15:77,2:38,13 +chr2 92995470 . C A 0 PASS DP=67;GPV=1;SPV=0.011605;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,3:17,7 +chr2 93032963 . A T 0 PASS DP=63;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:1,4:23,2 +chr2 93039274 . G T 0 PASS DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:6,11:9,2 +chr2 93100868 . A T 0 PASS DP=201;GPV=1;SPV=0.026393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:91,20:26,5:65,15 +chr2 93138680 . C A 0 PASS DP=196;GPV=1;SPV=0.01151;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:90,16:65,11:25,5 +chr2 93312547 . A C 0 PASS DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:2,4:16,1 +chr2 93641680 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chr2 93753399 . G A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4 +chr2 93753410 . T C 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4 +chr2 93775972 . T G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:2,0:23,4 +chr2 94087365 . T C 0 PASS DP=79;GPV=1;SPV=0.01322;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:6,4:31,3 +chr2 94145947 . T G 0 PASS DP=171;GPV=1;SPV=0.034765;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:97,19:48,2:49,17 +chr2 94271661 . G C 0 PASS DP=295;GPV=1;SPV=0.020189;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:139,18:61,14:78,4 +chr2 94287043 . A G 0 PASS DP=315;GPV=1;SPV=0.044272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:162:144,18:81,6:63,12 +chr2 94646732 . A G 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1 +chr2 95791873 . G C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr2 96096278 . T TA 0 PASS DP=31;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:6,6:5,1 +chr2 97607287 . A G 0 PASS DP=29;GPV=1;SPV=0.026054;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,1:6,5 +chr2 97923628 . T TA 0 PASS DP=48;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,6:0,4:3,2 +chr2 98014637 . C G 0 PASS DP=45;GPV=1;SPV=0.026716;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:9,11:8,8 +chr2 99074351 . C CGTGTGTGTGTGTGTGT 0 PASS DP=32;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:3,6:3,1 +chr2 99534592 . CAA C 0 PASS DP=32;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,11:3,8:4,3 +chr2 100304790 . A ATTTT 0 PASS DP=46;GPV=1;SPV=0.080441;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,4:13,1 +chr2 101600527 . G A 0 PASS DP=72;GPV=1;SPV=4.8188e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,9:11,6 +chr2 101608339 . TC T 0 PASS DP=77;GPV=1;SPV=0.014944;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:7,5:32,3 +chr2 102958979 . GT G 0 PASS DP=30;GPV=1;SPV=0.0067079;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:3,6:0,4 +chr2 103589519 . A T 0 PASS DP=90;GPV=1;SPV=2.0095e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:23,26:12,17:11,9 +chr2 103666547 . G A 0 PASS DP=72;GPV=1;SPV=3.7941e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:8,11:15,8 +chr2 104002968 . A G 0 PASS DP=21;GPV=1;SPV=0.016968;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:2,4:2,2 +chr2 104916714 . C T 0 PASS DP=66;GPV=1;SPV=6.0898e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:13,7:5,7 +chr2 105110931 . TTTTC T 0 PASS DP=81;GPV=1;SPV=0.015393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:18,5:21,2 +chr2 106458682 . G A 0 PASS DP=40;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1 +chr2 107159048 . A G 0 PASS DP=44;GPV=1;SPV=0.03809;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:11,1:7,6 +chr2 107171493 . CTT C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3 +chr2 107629681 . C A 0 PASS DP=46;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,5:4,4:3,1 +chr2 108313079 . C A 0 PASS DP=64;GPV=1;SPV=0.077419;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,2:2,1:5,1 +chr2 108509733 . A ATTTTTT 0 PASS DP=42;GPV=1;SPV=0.047632;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:13,3:7,4 +chr2 110068906 . G A 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr2 111392237 . A C 0 PASS DP=61;GPV=1;SPV=0.068908;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,3:11,1 +chr2 111572997 . A AAGGG 0 PASS DP=27;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:11,4:0,0 +chr2 111583445 . C G 0 PASS DP=52;GPV=1;SPV=0.0076585;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:6,3:14,9 +chr2 111596205 . C T 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:11,4:0,2 +chr2 111755585 . GAC G 0 PASS DP=75;GPV=1;SPV=0.060731;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:22,3:12,1 +chr2 112132043 . A G 0 PASS DP=40;GPV=1;SPV=0.098383;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,5:3,4:6,1 +chr2 112753526 . C CTT 0 PASS DP=32;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:10,6:4,1 +chr2 113591192 . G C 0 PASS DP=199;GPV=1;SPV=0.043637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:94,20:63,15:31,5 +chr2 113620330 . C CAT 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,2:3,5 +chr2 114371220 . A ATAAATATATATTTATATATATTTC 0 PASS DP=35;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,2:0,2:0,0 +chr2 114497241 . A G 0 PASS DP=40;GPV=1;SPV=0.021089;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:9,3:6,10 +chr2 114697749 . C CA 0 PASS DP=45;GPV=1;SPV=0.0098611;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:6,7:6,3 +chr2 115044355 . CT C 0 PASS DP=67;GPV=1;SPV=2.7081e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,9:11,6 +chr2 115675665 . G T 0 PASS DP=84;GPV=1;SPV=0.0040654;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:18,5:18,3 +chr2 115827343 . A ATG 0 PASS DP=49;GPV=1;SPV=0.042462;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,5:16,1 +chr2 116030269 . AT A 0 PASS DP=57;GPV=1;SPV=0.00052096;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,5:8,4 +chr2 117508901 . T TATAG 0 PASS DP=67;GPV=1;SPV=0.049895;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:13,1:15,3 +chr2 117607686 . G T 0 PASS DP=79;GPV=1;SPV=1.6483e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:10,14:7,4 +chr2 118449070 . C A 0 PASS DP=79;GPV=1;SPV=1.0714e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,22:11,16:11,6 +chr2 119876897 . A ATGTGTGTG 0 PASS DP=40;GPV=1;SPV=0.23776;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,3:8,1 +chr2 121278029 . C CT 0 PASS DP=29;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:4,3:3,2 +chr2 121854393 . G GT 0 PASS DP=41;GPV=1;SPV=0.031253;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,7:11,2:7,5 +chr2 123610163 . C CA 0 PASS DP=50;GPV=1;SPV=0.0011832;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:15,7:0,5 +chr2 123749949 . C G 0 PASS DP=53;GPV=1;SPV=7.7086e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,14:0,8:5,6 +chr2 124149403 . C CAA 0 PASS DP=29;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:6,8:1,1 +chr2 124320037 . C T 0 PASS DP=80;GPV=1;SPV=8.6457e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:30,24:19,14:11,10 +chr2 124857550 . G A 0 PASS DP=85;GPV=1;SPV=2.8454e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:15,8:16,7 +chr2 125354392 . C G 0 PASS DP=85;GPV=1;SPV=2.1663e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:19,14:7,8 +chr2 125595779 . C T 0 PASS DP=69;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,4:11,2:8,2 +chr2 125946992 . A T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3 +chr2 126264772 . A G 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr2 126956722 . C T 0 PASS DP=85;GPV=1;SPV=1.2544e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:9,10:15,10 +chr2 127788709 . C A 0 PASS DP=69;GPV=1;SPV=0.044019;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:23,3:7,4 +chr2 127952452 . A T 0 PASS DP=62;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:2,1:2,1 +chr2 128766892 . C CTTCT 0 PASS DP=55;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,4:2,1:14,3 +chr2 128861947 . A G 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chr2 130064088 . T C 0 PASS DP=38;GPV=1;SPV=0.084679;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,4:12,1 +chr2 130090797 . T C 0 PASS DP=46;GPV=1;SPV=0.12395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,4:12,1 +chr2 130248523 . G C 0 PASS DP=106;GPV=1;SPV=0.032646;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:45,14:22,5:23,9 +chr2 130997863 . A C 0 PASS DP=66;GPV=1;SPV=0.0020091;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,4:11,10 +chr2 131112156 . A C 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr2 131253757 . A C 0 PASS DP=42;GPV=1;SPV=0.0088303;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,3:5,7 +chr2 131531493 . T C 0 PASS DP=70;GPV=1;SPV=0.047994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:11,6:22,2 +chr2 132492612 . ATC A 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2 +chr2 133128945 . ATT A 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,5:5,3 +chr2 133518344 . A AT 0 PASS DP=23;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr2 134871678 . G GACAC 0 PASS DP=68;GPV=1;SPV=0.0032857;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,12:13,8:9,4 +chr2 135837613 . T TAA 0 PASS DP=31;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,5:5,4:1,1 +chr2 136551498 . CT C 0 PASS DP=36;GPV=1;SPV=0.011208;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,2:5,6 +chr2 136964873 . C T 0 PASS DP=85;GPV=1;SPV=8.8207e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:22,24:10,14:12,10 +chr2 137200855 . AGATGGGGACTCCTATGTTGCCCAGACTG A 0 PASS DP=55;GPV=1;SPV=0.0072786;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,2:11,9 +chr2 138858850 . G GGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.069102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:11,3:7,3 +chr2 139088395 . G T 0 PASS DP=88;GPV=1;SPV=4.6939e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:9,8:12,9 +chr2 139966003 . CATCT C 0 PASS DP=69;GPV=1;SPV=0.0068367;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,8:16,4:12,4 +chr2 139982211 . A G 0 PASS DP=68;GPV=1;SPV=0.090639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,3:17,1 +chr2 139982216 . TAC T 0 PASS DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,2:16,2 +chr2 140228200 . T A 0 PASS DP=37;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:4,1:10,3 +chr2 140228419 . AATAT A 0 PASS DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,4:5,2 +chr2 141840257 . C CT 0 PASS DP=24;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:7,4:1,1 +chr2 142162559 . GA G 0 PASS DP=36;GPV=1;SPV=0.024305;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:13,7:3,1 +chr2 142418880 . A G 0 PASS DP=61;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,6:8,3:5,3 +chr2 144225024 . T A 0 PASS DP=73;GPV=1;SPV=1.3048e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:12,14:14,6 +chr2 147731214 . TA T 0 PASS DP=50;GPV=1;SPV=0.030049;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,4:12,4 +chr2 148294509 . T TTTTTTGTTTTTTTTTTTTTTTGTTTG 0 PASS DP=36;GPV=1;SPV=0.094639;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:9,1:8,4 +chr2 148667293 . A T 0 PASS DP=70;GPV=1;SPV=2.9466e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,8:8,8 +chr2 149507574 . C T 0 PASS DP=71;GPV=1;SPV=2.2798e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:11,9:11,11 +chr2 150648952 . CACACACACAG C 0 PASS DP=70;GPV=1;SPV=0.016864;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:11,9:13,3 +chr2 151010114 . TTTATTTTTA T 0 PASS DP=28;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,1:12,3 +chr2 152383273 . C CTTT 0 PASS DP=23;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:2,8:2,2 +chr2 152811407 . G GT 0 PASS DP=82;GPV=1;SPV=1.5471e-07;SS=2;SSC=68;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:10,9:13,11 +chr2 154007180 . C T 0 PASS DP=80;GPV=1;SPV=7.6126e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:13,10:8,10 +chr2 155372561 . C CA 0 PASS DP=30;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1 +chr2 158508389 . G A 0 PASS DP=38;GPV=1;SPV=0.026054;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,6:5,1:6,5 +chr2 158942780 . T C 0 PASS DP=47;GPV=1;SPV=7.3933e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,9:9,4 +chr2 159643876 . CA C 0 PASS DP=47;GPV=1;SPV=0.01088;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:17,9:4,1 +chr2 160120731 . G A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,4:4,6 +chr2 161661349 . C A 0 PASS DP=85;GPV=1;SPV=6.7963e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,25:14,12:8,13 +chr2 162345125 . G T 0 PASS DP=35;GPV=1;SPV=0.20321;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:15,1:3,2 +chr2 162689143 . C CTATTATTATTAT 0 PASS DP=46;GPV=1;SPV=0.049216;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,6:9,2 +chr2 163117432 . C CA 0 PASS DP=27;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,3:6,2 +chr2 163812960 . T TCGCG 0 PASS DP=69;GPV=1;SPV=0.101;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,1:18,3 +chr2 164374846 . A ATT 0 PASS DP=31;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,3:2,3 +chr2 165398055 . A T 0 PASS DP=75;GPV=1;SPV=0.012505;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:18,8:11,3 +chr2 166310918 . T TA 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,2:10,2 +chr2 167680549 . C G 0 PASS DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:6,5:15,6 +chr2 168520598 . CTT C 0 PASS DP=23;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,1:6,4 +chr2 168739052 . A AT 0 PASS DP=37;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:7,3:5,4 +chr2 168888924 . CGTGTGT C 0 PASS DP=46;GPV=1;SPV=0.016449;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,6:8,5 +chr2 169361352 . C CTCTCTCTG 0 PASS DP=61;GPV=1;SPV=0.0071736;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:5,3:23,6 +chr2 169463881 . C T 0 PASS DP=61;GPV=1;SPV=0.0020358;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:17,4:8,6 +chr2 169548420 . T TA 0 PASS DP=73;GPV=1;SPV=0.00094133;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:15,10:14,9 +chr2 170959821 . C CT 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3 +chr2 171973400 . C CAA 0 PASS DP=62;GPV=1;SPV=0.0029985;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:8,13:6,9:2,4 +chr2 171992121 . G GA 0 PASS DP=55;GPV=1;SPV=0.040919;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,9:15,8:4,1 +chr2 172107292 . ATTTTT A 0 PASS DP=30;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,8:5,2:3,6 +chr2 172622674 . CATATATT C 0 PASS DP=50;GPV=1;SPV=0.22736;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,3:17,1 +chr2 172622723 . T C 0 PASS DP=46;GPV=1;SPV=0.0058029;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:12,8:8,6 +chr2 173005520 . G GTTTTTT 0 PASS DP=42;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:16,3:5,2 +chr2 173166910 . G GTT 0 PASS DP=50;GPV=1;SPV=0.018977;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,11:8,7:5,4 +chr2 173657640 . G A 0 PASS DP=50;GPV=1;SPV=0.00028276;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,6:10,8 +chr2 176045337 . CAA C 0 PASS DP=58;GPV=1;SPV=0.0033584;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:13,13:6,3 +chr2 177351096 . C G 0 PASS DP=32;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,1:0,1 +chr2 177495917 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.0012916;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,10:2,8:1,2 +chr2 177622392 . T A 0 PASS DP=59;GPV=1;SPV=8.1411e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,5:9,10 +chr2 178747853 . T C 0 PASS DP=94;GPV=1;SPV=9.3895e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:12,13:13,9 +chr2 180013868 . G GTT 0 PASS DP=70;GPV=1;SPV=0.0039979;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,14:13,7:13,7 +chr2 181677112 . ATTTTTT A 0 PASS DP=22;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,1:2,3 +chr2 181948670 . T C 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,1:14,3 +chr2 182972246 . C A 0 PASS DP=43;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,3:2,2:3,1 +chr2 183144629 . A G 0 PASS DP=77;GPV=1;SPV=2.1861e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:10,10:6,12 +chr2 183283891 . CTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTCTT C 0 PASS DP=30;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:0,2:4,3 +chr2 183644763 . G A 0 PASS DP=61;GPV=1;SPV=1.4703e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:9,9:9,6 +chr2 184213659 . G T 0 PASS DP=25;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,2:5,1:0,1 +chr2 184531464 . GAT G 0 PASS DP=30;GPV=1;SPV=0.013487;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,4:7,2 +chr2 186276309 . T C 0 PASS DP=75;GPV=1;SPV=1.2056e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:15,7:10,9 +chr2 187053684 . G A 0 PASS DP=72;GPV=1;SPV=0.00027216;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:13,6:10,13 +chr2 187117005 . AT A 0 PASS DP=40;GPV=1;SPV=0.02948;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,7:7,6:6,1 +chr2 187261193 . A G 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:5,9:4,4 +chr2 187358530 . T C 0 PASS DP=31;GPV=1;SPV=0.23366;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:2,3:7,1 +chr2 188931860 . C T 0 PASS DP=79;GPV=1;SPV=6.3838e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:9,5:13,12 +chr2 189670190 . C CA 0 PASS DP=42;GPV=1;SPV=0.019042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,9:5,1 +chr2 189714972 . G A 0 PASS DP=25;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:2,1:3,1 +chr2 190823113 . T C 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,1:11,3 +chr2 190972816 . G GGT 0 PASS DP=65;GPV=1;SPV=0.0042171;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,13:10,7:10,6 +chr2 191017618 . G A 0 PASS DP=85;GPV=1;SPV=0.056479;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,6:21,1:26,5 +chr2 192995417 . T A 0 PASS DP=54;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,2:2,1:2,1 +chr2 194048674 . G T 0 PASS DP=43;GPV=1;SPV=0.072536;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,4:8,4 +chr2 194491933 . G A 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr2 196991764 . T G 0 PASS DP=67;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:3,2:2,1:1,1 +chr2 197034050 . T TAGAGAGAGAGAGAG 0 PASS DP=44;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,11:8,8:3,3 +chr2 197145312 . TA T 0 PASS DP=69;GPV=1;SPV=0.027216;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:17,2:16,4 +chr2 197608623 . CTT C 0 PASS DP=35;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,16:4,11:6,5 +chr2 197922935 . G A 0 PASS DP=38;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:9,4:4,3 +chr2 198732500 . AT A 0 PASS DP=62;GPV=1;SPV=0.00020368;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,12:13,6:8,6 +chr2 198811945 . C CT 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr2 199109602 . G A 0 PASS DP=86;GPV=1;SPV=9.3322e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,9:11,4 +chr2 199355348 . C A 0 PASS DP=53;GPV=1;SPV=0.00077002;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:1,11:1,4:0,7 +chr2 199489596 . CTT C 0 PASS DP=46;GPV=1;SPV=0.10396;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3 +chr2 200803621 . T TACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.0030624;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:7,4:12,6 +chr2 201409279 . C CT 0 PASS DP=54;GPV=1;SPV=0.00051722;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:15,8:5,5 +chr2 202405687 . CA C 0 PASS DP=33;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,9:4,7:4,2 +chr2 202803400 . CAA C 0 PASS DP=30;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:2,7:6,1 +chr2 202836812 . TATAG T 0 PASS DP=55;GPV=1;SPV=0.21643;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,1:14,3 +chr2 202836818 . T G 0 PASS DP=53;GPV=1;SPV=0.27503;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,5:17,2:14,3 +chr2 202885308 . G C 0 PASS DP=68;GPV=1;SPV=6.4027e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:12,7:9,10 +chr2 205017666 . C T 0 PASS DP=72;GPV=1;SPV=8.2813e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:12,13:13,9 +chr2 205037381 . T A 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr2 205127296 . C CAA 0 PASS DP=48;GPV=1;SPV=0.018809;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,8:13,6:6,2 +chr2 205188782 . TC T 0 PASS DP=48;GPV=1;SPV=0.16171;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,1:9,3 +chr2 205413674 . T C 0 PASS DP=74;GPV=1;SPV=2.1625e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:13,13:11,9 +chr2 205567304 . GTTTT G 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr2 207009049 . AGT A 0 PASS DP=54;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,14:7,8:6,6 +chr2 207409313 . C G 0 PASS DP=54;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,2:7,1:0,1 +chr2 207679413 . A T 0 PASS DP=71;GPV=1;SPV=4.1304e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:10,10:10,12 +chr2 208100923 . GTTTTTTTTTTT G 0 PASS DP=28;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,6:5,2 +chr2 208103138 . C CA 0 PASS DP=48;GPV=1;SPV=0.014419;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:11,7:9,1 +chr2 209164458 . A G 0 PASS DP=39;GPV=1;SPV=0.025393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,7:8,1 +chr2 210451039 . T C 0 PASS DP=77;GPV=1;SPV=2.9457e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:23,24:9,12:14,12 +chr2 210497893 . C CATATATATATAT 0 PASS DP=24;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:2,9:2,1 +chr2 211856366 . C CTATTTATTTATT 0 PASS DP=68;GPV=1;SPV=0.033424;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,13:17,7:11,6 +chr2 214511921 . C T 0 PASS DP=50;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,6:9,5:7,1 +chr2 215015169 . T A 0 PASS DP=68;GPV=1;SPV=0.03569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,4:7,3:9,1 +chr2 217295628 . T TA 0 PASS DP=33;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,4:2,2 +chr2 218202779 . C CT 0 PASS DP=42;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:11,8:5,2 +chr2 218408723 . T A 0 PASS DP=57;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:2,3:1,1:1,2 +chr2 220020588 . C CA 0 PASS DP=47;GPV=1;SPV=0.024817;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,5:12,2 +chr2 220818415 . C A 0 PASS DP=65;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,4:4,2:9,2 +chr2 223426084 . CT C 0 PASS DP=24;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:3,6:1,1 +chr2 223579690 . G A 0 PASS DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:8,7:12,8 +chr2 223832135 . CTGTG C 0 PASS DP=59;GPV=1;SPV=0.01205;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:9,17:4,10:5,7 +chr2 225053895 . A ATATATTTTT 0 PASS DP=57;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,8:9,4:10,4 +chr2 225204909 . C CT 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:5,1:6,4 +chr2 227599021 . C T 0 PASS DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,3:14,2 +chr2 227656632 . G A 0 PASS DP=66;GPV=1;SPV=0.024543;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:18,2:19,8 +chr2 228461502 . TTG T 0 PASS DP=50;GPV=1;SPV=0.00082127;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6 +chr2 229668522 . GTGTGTGTGTGTGTGTATATATATATATA G 0 PASS DP=27;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:1,4:6,2 +chr2 231451014 . CT C 0 PASS DP=38;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:2,1:2,5 +chr2 231826069 . CA C 0 PASS DP=39;GPV=1;SPV=0.19378;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:5,1:15,2 +chr2 231828108 . C G 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr2 231830216 . AG A 0 PASS DP=40;GPV=1;SPV=0.12376;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:16,1:7,5 +chr2 231847018 . G A 0 PASS DP=38;GPV=1;SPV=0.32176;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,1:12,3 +chr2 231940065 . CA C 0 PASS DP=48;GPV=1;SPV=0.00793;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,7:8,2 +chr2 232694003 . C CT 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,7:6,1 +chr2 232734109 . C CT 0 PASS DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1 +chr2 233218804 . A C 0 PASS DP=69;GPV=1;SPV=8.6672e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,22:9,11:8,11 +chr2 233567231 . T G 0 PASS DP=125;GPV=1;SPV=0.043553;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,16:29,9:36,7 +chr2 234408303 . CT C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr2 236344992 . G A 0 PASS DP=82;GPV=1;SPV=0.069887;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:21,2:23,3 +chr2 238196072 . T G 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,1:2,4 +chr2 240284281 . G A 0 PASS DP=68;GPV=1;SPV=7.2998e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:13,8:9,11 +chr2 240850366 . T C 0 PASS DP=84;GPV=1;SPV=0.037048;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:28,5:15,1 +chr2 240881091 . C A 0 PASS DP=60;GPV=1;SPV=1.9498e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:8,7:10,8 +chr2 241338945 . TTA T 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2 +chr2 241338962 . A AT 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr2 241338967 . AAATAT A 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,3:4,2 +chr2 242181823 . C T 0 PASS DP=81;GPV=1;SPV=0.049592;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:20,6:17,1 +chr2 242182971 . C T 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2 +chr20 833025 . A G 0 PASS DP=41;GPV=1;SPV=0.03726;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,2:10,5 +chr20 1559135 . G GTATATATATATA 0 PASS DP=50;GPV=1;SPV=0.062277;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:16,2:8,3 +chr20 3696133 . C T 0 PASS DP=72;GPV=1;SPV=0.10963;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:17,4:25,1 +chr20 3746301 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,3:5,1 +chr20 3818084 . C CA 0 PASS DP=37;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,8:8,6:6,2 +chr20 3887307 . T C 0 PASS DP=68;GPV=1;SPV=0.050247;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,1:17,3 +chr20 5479327 . G A 0 PASS DP=71;GPV=1;SPV=9.8644e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:12,7:8,6 +chr20 5542922 . AGT A 0 PASS DP=84;GPV=1;SPV=0.063538;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:29,2:19,4 +chr20 5542926 . AT A 0 PASS DP=77;GPV=1;SPV=0.045288;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:26,2:15,4 +chr20 5701011 . ACCTGGAATCATTCAACAGTGAAAACCTATGAACTTTATTTACT A 0 PASS DP=46;GPV=1;SPV=0.063391;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:6,1:18,5 +chr20 5871836 . GGAA G 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr20 6198774 . C A 0 PASS DP=67;GPV=1;SPV=3.5855e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:11,5:9,13 +chr20 7224002 . GT G 0 PASS DP=33;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:8,3:4,2 +chr20 8704984 . C CTTTTTTTTTT 0 PASS DP=29;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,10:1,9:3,1 +chr20 9203777 . GTTTTT G 0 PASS DP=34;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,6:4,4 +chr20 10453318 . G A 0 PASS DP=82;GPV=1;SPV=0.036717;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:18,3:14,5 +chr20 11100141 . G A 0 PASS DP=88;GPV=1;SPV=2.1422e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:36,21:23,13:13,8 +chr20 12653895 . A T 0 PASS DP=88;GPV=1;SPV=1.423e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:25,27:14,12:11,15 +chr20 12963109 . G C 0 PASS DP=77;GPV=1;SPV=5.0503e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:10,13:10,9 +chr20 13951296 . A G 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,3:13,1 +chr20 14210364 . C T 0 PASS DP=73;GPV=1;SPV=1.7288e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:15,9:9,6 +chr20 16200995 . ATTTT A 0 PASS DP=33;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:5,2:5,5 +chr20 16259183 . TC T 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:5,4:0,1 +chr20 16347575 . T A 0 PASS DP=74;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:19,4:9,1:10,3 +chr20 16514585 . A G 0 PASS DP=53;GPV=1;SPV=0.057842;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,4:7,2:5,2 +chr20 17335857 . G GGTGTGT 0 PASS DP=51;GPV=1;SPV=0.00093746;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:14,6:4,6 +chr20 17347787 . CGAAAGAAAGAAAGAAA C 0 PASS DP=41;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:8,3:7,1 +chr20 17483028 . A ATTT 0 PASS DP=75;GPV=1;SPV=0.00016659;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,7:10,4 +chr20 17851390 . A T 0 PASS DP=80;GPV=1;SPV=0.0061141;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:24,7:12,1 +chr20 17851402 . CT C 0 PASS DP=70;GPV=1;SPV=0.090639;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,4:23,3:11,1 +chr20 18054782 . AG A 0 PASS DP=52;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1 +chr20 18184062 . C T 0 PASS DP=78;GPV=1;SPV=8.9729e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,23:12,13:13,10 +chr20 18250697 . TAA T 0 PASS DP=63;GPV=1;SPV=0.060214;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:17,3:9,1 +chr20 18579211 . GTTTTTT G 0 PASS DP=31;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,6:8,4:2,2 +chr20 19116484 . CT C 0 PASS DP=31;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,5:4,1 +chr20 19147598 . C CT 0 PASS DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:13,5:2,1 +chr20 19187357 . G A 0 PASS DP=73;GPV=1;SPV=0.00031092;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:16,4:14,10 +chr20 19322981 . C A 0 PASS DP=84;GPV=1;SPV=1.8934e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,24:18,16:8,8 +chr20 19513736 . T TAAAA 0 PASS DP=47;GPV=1;SPV=0.045605;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,7:11,3 +chr20 19696971 . AAGGGAGGGAGGG A 0 PASS DP=24;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,5:1,2 +chr20 21012812 . C T 0 PASS DP=103;GPV=1;SPV=5.4427e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:31,27:11,11:20,16 +chr20 22836039 . G A 0 PASS DP=79;GPV=1;SPV=2.1617e-10;SS=2;SSC=96;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,20:3,5:10,15 +chr20 23803669 . A G 0 PASS DP=36;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:1,1:4,1 +chr20 26270392 . C CA 0 PASS DP=87;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:22,1:19,7 +chr20 26441655 . C A 0 PASS DP=708;GPV=1;SPV=0.013532;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:420:376,44:161,25:215,19 +chr20 26542186 . A T 0 PASS DP=1421;GPV=1;SPV=0.0048167;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:768:678,87:337,50:341,37 +chr20 26603057 . AG A 0 PASS DP=252;GPV=1;SPV=0.01924;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:117,23:29,5:88,18 +chr20 27655384 . G A 0 PASS DP=85;GPV=1;SPV=0.0028871;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,9:25,3:4,6 +chr20 27765802 . C G 0 PASS DP=551;GPV=1;SPV=0.021477;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:314:264,50:219,45:45,5 +chr20 27962669 . G A 0 PASS DP=32;GPV=1;SPV=0.017734;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,4:7,6 +chr20 28514774 . A T 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:2,3:20,2 +chr20 28516630 . G A 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:19,2:3,2 +chr20 28624228 . C T 0 PASS DP=341;GPV=1;SPV=0.028401;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:162,27:97,18:65,9 +chr20 28642942 . A AAT 0 PASS DP=125;GPV=1;SPV=0.040321;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:53,10:28,5:25,5 +chr20 28777653 . T C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,2:5,3 +chr20 28839112 . G C 0 PASS DP=286;GPV=1;SPV=0.015773;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:145,17:139,15:6,2 +chr20 28900911 . C A 0 PASS DP=310;GPV=1;SPV=0.038337;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:151,26:68,14:83,12 +chr20 28959558 . T C 0 PASS DP=87;GPV=1;SPV=0.048243;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:25,1:11,7 +chr20 29030826 . G A 0 PASS DP=79;GPV=1;SPV=9.0569e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,8:13,11 +chr20 29072931 . G C 0 PASS DP=421;GPV=1;SPV=0.020403;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:201,27:85,14:116,13 +chr20 29222612 . G A 0 PASS DP=235;GPV=1;SPV=0.044307;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:110,23:56,14:54,9 +chr20 29242240 . CA C 0 PASS DP=303;GPV=1;SPV=0.037913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:155,24:82,7:73,17 +chr20 29242274 . A C 0 PASS DP=316;GPV=1;SPV=0.0092047;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:154,24:85,8:69,16 +chr20 29508233 . G A 0 PASS DP=253;GPV=1;SPV=0.027818;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:130,16:69,9:61,7 +chr20 29882272 . G A 0 PASS DP=622;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:350:300,50:118,22:182,28 +chr20 29974817 . T A 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:8,4:0,5 +chr20 29988308 . C G 0 PASS DP=32;GPV=1;SPV=0.037959;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,3:9,1 +chr20 30105925 . G C 0 PASS DP=74;GPV=1;SPV=0.040005;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:21,2:11,8 +chr20 30105984 . G T 0 PASS DP=106;GPV=1;SPV=0.029347;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:22,3:32,3 +chr20 30114859 . TC T 0 PASS DP=121;GPV=1;SPV=0.028807;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:51,16:34,10:17,6 +chr20 30258827 . T G 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,3:7,1 +chr20 30258829 . T G 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:0,3:5,1 +chr20 30356428 . A T 0 PASS DP=149;GPV=1;SPV=0.049484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:30,2:43,10 +chr20 30394669 . A G 0 PASS DP=143;GPV=1;SPV=0.027216;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:34,6:30,11 +chr20 30507298 . AAGAAAGAG A 0 PASS DP=53;GPV=1;SPV=0.044305;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,5:13,4 +chr20 30861112 . C T 0 PASS DP=243;GPV=1;SPV=0.004446;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:104,27:57,20:47,7 +chr20 31055552 . G T 0 PASS DP=463;GPV=1;SPV=0.021878;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:240,29:135,13:105,16 +chr20 31063384 . G T 0 PASS DP=104;GPV=1;SPV=0.095044;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:27,5:8,3:19,2 +chr20 31075736 . C A 0 PASS DP=907;GPV=1;SPV=0.043392;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:592:454,69:121,26:333,43 +chr20 31096487 . C CAATGG 0 PASS DP=49;GPV=1;SPV=0.12446;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,3:15,2 +chr20 31096524 . T C 0 PASS DP=50;GPV=1;SPV=0.13133;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2 +chr20 31346990 . C CAA 0 PASS DP=39;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,9:4,7:6,2 +chr20 31957819 . TATATATATATATATATATTCTGTA T 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,1:4,3 +chr20 32850549 . C CT 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr20 33536358 . T A 0 PASS DP=28;GPV=1;SPV=0.0054348;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,5:7,2 +chr20 33557004 . C CT 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr20 33910437 . CTTT C 0 PASS DP=29;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,4:5,1 +chr20 34375696 . AT A 0 PASS DP=30;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr20 35090180 . T TAA 0 PASS DP=54;GPV=1;SPV=0.0021067;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,6:9,8 +chr20 35153833 . G A 0 PASS DP=61;GPV=1;SPV=0.17513;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,2:19,2 +chr20 35186566 . CA C 0 PASS DP=41;GPV=1;SPV=0.015482;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:14,9:4,1 +chr20 35214688 . C CA 0 PASS DP=57;GPV=1;SPV=0.0053306;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,14:13,11:13,3 +chr20 36014118 . G A 0 PASS DP=60;GPV=1;SPV=1.3402e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,17:3,7:9,10 +chr20 36763885 . C CA 0 PASS DP=38;GPV=1;SPV=0.069923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,8:9,7:7,1 +chr20 37126314 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr20 37908680 . G C 0 PASS DP=96;GPV=1;SPV=3.085e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:31,33:18,18:13,15 +chr20 38379162 . A G 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr20 38640174 . T C 0 PASS DP=54;GPV=1;SPV=0.13137;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,5:13,3:18,2 +chr20 38708430 . A AAT 0 PASS DP=47;GPV=1;SPV=0.011329;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:9,5:5,4 +chr20 39135065 . C CT 0 PASS DP=59;GPV=1;SPV=0.012896;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,15:13,6:12,9 +chr20 39203388 . G T 0 PASS DP=82;GPV=1;SPV=5.1055e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:17,10:8,10 +chr20 40161346 . T G 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,6:7,4 +chr20 41019977 . T TTGTG 0 PASS DP=38;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,12:5,7:2,5 +chr20 41227191 . T TG 0 PASS DP=72;GPV=1;SPV=8.9762e-07;SS=2;SSC=60;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:6,8:12,7 +chr20 41787546 . G GTTTT 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr20 41876054 . C CA 0 PASS DP=43;GPV=1;SPV=0.009224;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:9,7:1,2 +chr20 42850389 . G A 0 PASS DP=82;GPV=1;SPV=2.1303e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:15,9:13,12 +chr20 43287842 . C T 0 PASS DP=66;GPV=1;SPV=3.9117e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:6,8:11,12 +chr20 44680826 . T A 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2 +chr20 45697379 . A ATTT 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,4:15,2 +chr20 45738910 . CTATATATAGTTA C 0 PASS DP=28;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr20 47450571 . G A 0 PASS DP=88;GPV=1;SPV=3.2073e-10;SS=2;SSC=94;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:21,32:13,16:8,16 +chr20 47490809 . A C 0 PASS DP=46;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,2:2,1:4,1 +chr20 47593334 . A AT 0 PASS DP=36;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:8,3:3,1 +chr20 48412456 . C T 0 PASS DP=43;GPV=1;SPV=0.00098758;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,1:8,6 +chr20 48512118 . T C 0 PASS DP=24;GPV=1;SPV=0.27668;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,2:6,1 +chr20 50667286 . CT C 0 PASS DP=35;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:5,4:2,2 +chr20 51241063 . C CT 0 PASS DP=46;GPV=1;SPV=0.0083603;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:11,10:6,4 +chr20 51472629 . CTT C 0 PASS DP=32;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:6,4:6,1 +chr20 51961764 . TA T 0 PASS DP=29;GPV=1;SPV=0.011401;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:2,5:4,2 +chr20 52077167 . CTTTTT C 0 PASS DP=52;GPV=1;SPV=0.019351;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,8:7,4 +chr20 52113592 . C CTTT 0 PASS DP=34;GPV=1;SPV=0.013278;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:7,7:3,3 +chr20 52922077 . C CAA 0 PASS DP=29;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:2,3:2,1 +chr20 53096927 . C A 0 PASS DP=76;GPV=1;SPV=0.023594;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,2:12,3 +chr20 54564919 . C G 0 PASS DP=80;GPV=1;SPV=1.6327e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:21,26:13,12:8,14 +chr20 56302246 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0058029;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,12:7,10:13,2 +chr20 58122733 . CA C 0 PASS DP=32;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,7:5,1 +chr20 58466125 . C CAAA 0 PASS DP=45;GPV=1;SPV=0.018356;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:10,6:3,1 +chr20 58798661 . C CTT 0 PASS DP=37;GPV=1;SPV=0.0017432;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,17:2,7:1,10 +chr20 59443486 . TACACAC T 0 PASS DP=40;GPV=1;SPV=0.037674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:15,4:3,6 +chr20 60647654 . CTCTCTGTGTGTG C 0 PASS DP=54;GPV=1;SPV=0.043024;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:13,6:7,3 +chr20 61071639 . C T 0 PASS DP=92;GPV=1;SPV=2.8402e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:15,13:12,11 +chr20 61383296 . ATG A 0 PASS DP=57;GPV=1;SPV=0.030521;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:11,3:16,3 +chr20 61383377 . GGAT G 0 PASS DP=54;GPV=1;SPV=0.008813;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,3:11,4 +chr20 61383394 . T TATG 0 PASS DP=62;GPV=1;SPV=0.019947;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:13,2:14,4 +chr20 62325123 . G A 0 PASS DP=61;GPV=1;SPV=0.18255;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,3:19,2 +chr20 62593036 . TGTGTGCATGTGTGA T 0 PASS DP=69;GPV=1;SPV=0.028542;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,9:15,2:11,7 +chr20 63101758 . C T 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:15,2:3,2 +chr20 63221532 . C T 0 PASS DP=63;GPV=1;SPV=0.015574;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,11:11,7:9,4 +chr20 63257805 . T C 0 PASS DP=46;GPV=1;SPV=0.043618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:16,4:0,3 +chr20 63257807 . A G 0 PASS DP=43;GPV=1;SPV=0.022502;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:17,4:0,3 +chr20 63257808 . T A 0 PASS DP=54;GPV=1;SPV=0.030049;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,8:19,5:1,3 +chr20 63257828 . AGGACAGTGAT A 0 PASS DP=58;GPV=1;SPV=0.096448;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:23,2:6,2 +chr20 63492639 . ACAAT A 0 PASS DP=35;GPV=1;SPV=0.028934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,8:3,1 +chr20 63609857 . CT C 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,2:9,2 +chr20 63847301 . G GAGACACACACAGACACTGACACACAC 0 PASS DP=42;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:4,6:7,1 +chr21 5225998 . A G 0 PASS DP=349;GPV=1;SPV=0.02483;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:162,26:68,14:94,12 +chr21 5226679 . T C 0 PASS DP=509;GPV=1;SPV=0.030746;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:274:238,36:116,13:122,23 +chr21 5231730 . C G 0 PASS DP=208;GPV=1;SPV=0.010705;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:90,21:38,9:52,12 +chr21 5251434 . T G 0 PASS DP=220;GPV=1;SPV=0.045679;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:36,8:67,13 +chr21 6376086 . G A 0 PASS DP=354;GPV=1;SPV=0.023376;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:185,21:106,12:79,9 +chr21 7254538 . T G 0 PASS DP=79;GPV=1;SPV=0.024408;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:26,5:17,3 +chr21 7281326 . T C 0 PASS DP=193;GPV=1;SPV=0.0072587;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:86,25:55,15:31,10 +chr21 7958662 . T C 0 PASS DP=512;GPV=1;SPV=0.00091737;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:294:239,55:121,34:118,21 +chr21 7958780 . T A 0 PASS DP=487;GPV=1;SPV=0.022966;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:222,44:101,16:121,28 +chr21 7966316 . G C 0 PASS DP=274;GPV=1;SPV=0.0021228;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:117,28:57,15:60,13 +chr21 7995998 . A T 0 PASS DP=163;GPV=1;SPV=0.0018624;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:63,19:37,7:26,12 +chr21 8035866 . T G 0 PASS DP=63;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:22,2:12,2 +chr21 8039154 . A T 0 PASS DP=90;GPV=1;SPV=0.048393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,12:24,8:12,4 +chr21 8419850 . A ACTGT 0 PASS DP=1226;GPV=1;SPV=0.011035;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:781:664,106:356,77:308,29 +chr21 8440697 . G A 0 PASS DP=3237;GPV=1;SPV=0.0067114;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2059:1834,224:1141,168:693,56 +chr21 8536809 . T C 0 PASS DP=250;GPV=1;SPV=0.035525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:129,18:65,8:64,10 +chr21 8546996 . C T 0 PASS DP=242;GPV=1;SPV=0.028437;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:124,16:72,7:52,9 +chr21 8554722 . AATG A 0 PASS DP=112;GPV=1;SPV=0.042156;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:37,12:18,2:19,10 +chr21 8625901 . A T 0 PASS DP=88;GPV=1;SPV=0.0099066;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:6,2:37,6 +chr21 8660444 . G A 0 PASS DP=134;GPV=1;SPV=0.048236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:28,3:29,13 +chr21 8675401 . G A 0 PASS DP=50;GPV=1;SPV=0.036877;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,6:4,2 +chr21 8682330 . A G 0 PASS DP=65;GPV=1;SPV=0.024897;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,8:14,1 +chr21 8769953 . C T 0 PASS DP=235;GPV=1;SPV=0.046124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:110,14:49,8:61,6 +chr21 8779016 . C A 0 PASS DP=282;GPV=1;SPV=0.024803;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:137,21:63,16:74,5 +chr21 8787009 . TGTC T 0 PASS DP=284;GPV=1;SPV=0.015842;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:133,31:64,20:69,11 +chr21 8795779 . A G 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0 +chr21 8799600 . A G 0 PASS DP=108;GPV=1;SPV=0.020858;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:26,10:19,2 +chr21 8816612 . A G 0 PASS DP=204;GPV=1;SPV=0.012785;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:96,19:73,12:23,7 +chr21 8818460 . G T 0 PASS DP=68;GPV=1;SPV=0.0059499;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:7,1:17,5 +chr21 8830956 . CA C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,4:2,0 +chr21 8832637 . G A 0 PASS DP=119;GPV=1;SPV=0.028559;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:54,16:37,14:17,2 +chr21 8834266 . A C 0 PASS DP=523;GPV=1;SPV=0.026699;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:270:227,43:113,23:114,20 +chr21 8846751 . A G 0 PASS DP=646;GPV=1;SPV=0.010371;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:368:325,43:158,14:167,29 +chr21 8853664 . G A 0 PASS DP=583;GPV=1;SPV=0.0061804;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:305:267,38:128,13:139,25 +chr21 8857552 . A G 0 PASS DP=464;GPV=1;SPV=0.027757;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:248:221,27:79,7:142,20 +chr21 8863068 . C T 0 PASS DP=612;GPV=1;SPV=0.044801;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:340:297,43:161,20:136,23 +chr21 8865457 . A T 0 PASS DP=583;GPV=1;SPV=0.001813;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:318:280,38:175,27:105,11 +chr21 8885938 . G C 0 PASS DP=585;GPV=1;SPV=0.0065017;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:319:283,36:131,17:152,19 +chr21 9006958 . G C 0 PASS DP=378;GPV=1;SPV=0.046043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:177,24:94,12:83,12 +chr21 9010439 . C T 0 PASS DP=356;GPV=1;SPV=0.027572;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:183,22:105,7:78,15 +chr21 9015907 . G A 0 PASS DP=373;GPV=1;SPV=0.019314;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:175,23:88,12:87,11 +chr21 9018769 . C T 0 PASS DP=362;GPV=1;SPV=0.0016674;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:159,37:81,23:78,14 +chr21 9030012 . T C 0 PASS DP=288;GPV=1;SPV=0.029096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:150,24:69,13:81,11 +chr21 9030013 . G A 0 PASS DP=284;GPV=1;SPV=0.014282;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:145,23:68,13:77,10 +chr21 9058265 . T G 0 PASS DP=354;GPV=1;SPV=0.044755;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:182,30:86,18:96,12 +chr21 9059947 . G A 0 PASS DP=331;GPV=1;SPV=0.027458;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:161,22:72,11:89,11 +chr21 9070503 . G A 0 PASS DP=405;GPV=1;SPV=0.036246;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:197,26:94,12:103,14 +chr21 9073841 . C T 0 PASS DP=300;GPV=1;SPV=0.041439;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:150,20:59,5:91,15 +chr21 9076389 . A G 0 PASS DP=304;GPV=1;SPV=0.0013819;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:145,33:88,14:57,19 +chr21 9091122 . C T 0 PASS DP=405;GPV=1;SPV=0.010665;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:178,39:112,20:66,19 +chr21 9101789 . A G 0 PASS DP=57;GPV=1;SPV=0.045802;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,3:12,3 +chr21 9102555 . TTTTG T 0 PASS DP=256;GPV=1;SPV=0.0082606;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:70,10:54,5 +chr21 9110288 . A T 0 PASS DP=636;GPV=1;SPV=0.034218;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:346:308,38:180,18:128,20 +chr21 9110896 . T C 0 PASS DP=574;GPV=1;SPV=0.0023613;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:325:285,40:132,13:153,27 +chr21 9123920 . T A 0 PASS DP=521;GPV=1;SPV=0.016704;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:295:263,32:146,18:117,14 +chr21 9126698 . C G 0 PASS DP=553;GPV=1;SPV=0.029204;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:243,36:154,18:89,18 +chr21 9126790 . C T 0 PASS DP=604;GPV=1;SPV=0.007596;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:312:274,38:159,18:115,20 +chr21 9141392 . T A 0 PASS DP=580;GPV=1;SPV=0.026096;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:315:266,49:137,26:129,23 +chr21 9151734 . G T 0 PASS DP=452;GPV=1;SPV=0.043814;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:205,37:107,28:98,9 +chr21 9151776 . A G 0 PASS DP=435;GPV=1;SPV=0.031767;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:199,32:124,22:75,10 +chr21 9174854 . G A 0 PASS DP=391;GPV=1;SPV=0.0016586;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:182,28:97,12:85,16 +chr21 9175241 . A C 0 PASS DP=435;GPV=1;SPV=0.019887;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:191,35:124,19:67,16 +chr21 9183135 . C T 0 PASS DP=479;GPV=1;SPV=0.034094;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:268:225,43:110,24:115,19 +chr21 9186837 . G C 0 PASS DP=511;GPV=1;SPV=0.016891;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:280:233,47:104,19:129,28 +chr21 9186947 . A C 0 PASS DP=474;GPV=1;SPV=0.031342;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:268:240,28:123,18:117,10 +chr21 9194375 . G A 0 PASS DP=898;GPV=1;SPV=0.025909;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:483:433,50:246,39:187,11 +chr21 9259601 . G A 0 PASS DP=586;GPV=1;SPV=0.00027813;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:342:285,57:144,33:141,24 +chr21 9266003 . A G 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,1:6,4 +chr21 9274388 . G A 0 PASS DP=147;GPV=1;SPV=0.039332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:67,16:64,13:3,3 +chr21 9297708 . G A 0 PASS DP=453;GPV=1;SPV=0.012951;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:250:224,26:103,10:121,16 +chr21 9304507 . G A 0 PASS DP=610;GPV=1;SPV=0.040493;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:355:319,36:153,12:166,24 +chr21 9309334 . C T 0 PASS DP=476;GPV=1;SPV=0.028189;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:219,25:129,18:90,7 +chr21 9315263 . T C 0 PASS DP=530;GPV=1;SPV=0.024312;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:298:266,32:133,15:133,17 +chr21 9333403 . A T 0 PASS DP=441;GPV=1;SPV=0.010601;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:259:231,28:116,14:115,14 +chr21 9340796 . T C 0 PASS DP=385;GPV=1;SPV=0.048947;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:191,22:136,12:55,10 +chr21 9340825 . T C 0 PASS DP=438;GPV=1;SPV=0.0060631;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:250:222,28:133,18:89,10 +chr21 9343680 . T G 0 PASS DP=416;GPV=1;SPV=0.046557;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:219,25:107,12:112,13 +chr21 9346068 . C G 0 PASS DP=615;GPV=1;SPV=0.049783;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:333:287,46:141,9:146,37 +chr21 9350207 . A AT 0 PASS DP=488;GPV=1;SPV=0.031053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:265:227,38:107,9:120,29 +chr21 9354669 . G C 0 PASS DP=399;GPV=1;SPV=0.0263;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:243:218,25:129,12:89,13 +chr21 9355187 . G T 0 PASS DP=560;GPV=1;SPV=0.023377;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:329:276,53:147,24:129,29 +chr21 9362484 . T G 0 PASS DP=384;GPV=1;SPV=0.040314;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:194,26:96,16:98,10 +chr21 9527333 . C T 0 PASS DP=117;GPV=1;SPV=0.018462;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:54,15:43,11:11,4 +chr21 9551000 . ACT A 0 PASS DP=191;GPV=1;SPV=0.022332;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:91,18:39,11:52,7 +chr21 9551005 . T TGAGGTCAGGA 0 PASS DP=195;GPV=1;SPV=0.023467;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:90,19:37,12:53,7 +chr21 9628624 . A G 0 PASS DP=203;GPV=1;SPV=0.00071048;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:78,30:41,13:37,17 +chr21 9657307 . C CAA 0 PASS DP=105;GPV=1;SPV=0.014457;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:22,13:14,10:8,3 +chr21 9664360 . C T 0 PASS DP=299;GPV=1;SPV=0.037377;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:139,28:67,11:72,17 +chr21 9675117 . G A 0 PASS DP=201;GPV=1;SPV=0.009354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:106,19:51,11:55,8 +chr21 9676168 . C T 0 PASS DP=218;GPV=1;SPV=0.044993;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:42,5:55,16 +chr21 9680606 . G A 0 PASS DP=219;GPV=1;SPV=0.048526;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:49,13:54,8 +chr21 9687709 . G A 0 PASS DP=229;GPV=1;SPV=0.024684;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:103,19:62,8:41,11 +chr21 9694189 . G A 0 PASS DP=228;GPV=1;SPV=0.043687;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:107,21:50,11:57,10 +chr21 9705739 . G C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,1:6,3 +chr21 9817080 . G T 0 PASS DP=3580;GPV=1;SPV=0.014742;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2013:1779,234:674,75:1105,159 +chr21 9818669 . G A 0 PASS DP=790;GPV=1;SPV=0.020873;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:445:386,49:298,37:88,12 +chr21 9843165 . A G 0 PASS DP=188;GPV=1;SPV=0.0047134;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:84,24:47,15:37,9 +chr21 9908583 . C T 0 PASS DP=181;GPV=1;SPV=0.018498;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:74,18:39,14:35,4 +chr21 9909302 . G A 0 PASS DP=206;GPV=1;SPV=0.007021;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:87,24:55,11:32,13 +chr21 9909505 . G T 0 PASS DP=312;GPV=1;SPV=0.04634;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:139,26:71,13:68,13 +chr21 9909534 . C T 0 PASS DP=276;GPV=1;SPV=0.033658;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:114,21:53,12:61,9 +chr21 9941161 . T C 0 PASS DP=250;GPV=1;SPV=0.01166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:115,22:61,11:54,11 +chr21 9951540 . G A 0 PASS DP=242;GPV=1;SPV=0.010745;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:104,24:62,11:42,13 +chr21 9956562 . T C 0 PASS DP=204;GPV=1;SPV=0.036658;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:86,20:41,12:45,8 +chr21 9967057 . G C 0 PASS DP=191;GPV=1;SPV=2.8573e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:40,9:47,7 +chr21 10074081 . T A 0 PASS DP=252;GPV=1;SPV=0.0070661;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:108,30:57,11:51,19 +chr21 10163368 . G A 0 PASS DP=206;GPV=1;SPV=0.040113;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:105,25:53,14:52,11 +chr21 10343994 . C T 0 PASS DP=323;GPV=1;SPV=6.3894e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:152,22:67,6:85,16 +chr21 10358499 . C T 0 PASS DP=298;GPV=1;SPV=0.027824;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:146,23:68,15:78,8 +chr21 10359428 . G A 0 PASS DP=317;GPV=1;SPV=0.00076568;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:156,27:76,17:80,10 +chr21 10361076 . G C 0 PASS DP=623;GPV=1;SPV=0.020065;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:340:259,48:130,24:129,24 +chr21 10361114 . C G 0 PASS DP=698;GPV=1;SPV=0.0029897;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:366:308,58:165,24:143,34 +chr21 10403331 . C T 0 PASS DP=276;GPV=1;SPV=0.017765;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:133,22:47,3:86,19 +chr21 10422921 . G A 0 PASS DP=250;GPV=1;SPV=0.036589;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:119,15:83,11:36,4 +chr21 10460505 . T C 0 PASS DP=399;GPV=1;SPV=0.021557;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:224:197,27:108,13:89,14 +chr21 10469718 . G A 0 PASS DP=389;GPV=1;SPV=0.015551;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:185,33:109,21:76,12 +chr21 10473424 . C T 0 PASS DP=362;GPV=1;SPV=0.0071959;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:172,25:61,13:111,12 +chr21 10488409 . A G 0 PASS DP=178;GPV=1;SPV=0.018334;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:86,14:57,8:29,6 +chr21 10488554 . G T 0 PASS DP=200;GPV=1;SPV=0.012581;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:98,18:61,11:37,7 +chr21 10663986 . C T 0 PASS DP=233;GPV=1;SPV=0.0045943;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:109,31:51,18:58,13 +chr21 10716321 . T G 0 PASS DP=174;GPV=1;SPV=0.0050663;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:96,21:56,8:40,13 +chr21 10746406 . C T 0 PASS DP=475;GPV=1;SPV=0.025619;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:287:254,33:128,15:126,18 +chr21 10756286 . G C 0 PASS DP=414;GPV=1;SPV=0.015409;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:216:190,26:91,10:99,16 +chr21 10798012 . T A 0 PASS DP=606;GPV=1;SPV=0.041582;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:340:302,38:155,25:147,13 +chr21 10808909 . G A 0 PASS DP=290;GPV=1;SPV=0.042499;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:147,26:67,12:80,14 +chr21 12976028 . G T 0 PASS DP=160;GPV=1;SPV=7.0417e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:33,7:36,11 +chr21 13027223 . C CA 0 PASS DP=98;GPV=1;SPV=0.035746;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,15:22,2:23,13 +chr21 13100149 . C T 0 PASS DP=83;GPV=1;SPV=0.032357;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:24,5:10,4 +chr21 13139744 . C A 0 PASS DP=44;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1 +chr21 13139745 . C A 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,4:15,1 +chr21 13225211 . C CA 0 PASS DP=52;GPV=1;SPV=0.005596;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,7:16,6:2,1 +chr21 13485001 . C T 0 PASS DP=79;GPV=1;SPV=4.6629e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:14,7:10,8 +chr21 13490606 . ATATATTT A 0 PASS DP=18;GPV=1;SPV=0.13333;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:1,1:1,1 +chr21 13550568 . A G 0 PASS DP=90;GPV=1;SPV=0.045262;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:33,5:23,4 +chr21 13612108 . C CAT 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3 +chr21 13810187 . AGGGG A 0 PASS DP=67;GPV=1;SPV=0.083854;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,5:16,3:20,2 +chr21 14061959 . C A 0 PASS DP=36;GPV=1;SPV=0.004133;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:3,6:7,7 +chr21 15239757 . CTATA C 0 PASS DP=51;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:10,12:6,9:4,3 +chr21 16145996 . ATGTGAGCCAGCAAAGTAATGTGAGGAGTTGCCTTGGGCCTGGGAGAATC A 0 PASS DP=61;GPV=1;SPV=0.022393;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:19,6:7,3 +chr21 16420345 . T C 0 PASS DP=66;GPV=1;SPV=6.9776e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,19:8,11:9,8 +chr21 17057769 . AGTAAAAGT A 0 PASS DP=76;GPV=1;SPV=0.00016727;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:12,6:18,8 +chr21 17530114 . A AT 0 PASS DP=24;GPV=1;SPV=0.026224;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,3:2,3 +chr21 18070027 . C T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr21 18174120 . GGT G 0 PASS DP=32;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,3:4,3 +chr21 19524779 . C CAA 0 PASS DP=53;GPV=1;SPV=0.0021328;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,16:9,11:8,5 +chr21 20144940 . A C 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,2:15,2 +chr21 20349991 . C T 0 PASS DP=87;GPV=1;SPV=2.6597e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:22,26:6,19:16,7 +chr21 22562732 . ATTTT A 0 PASS DP=18;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,2:2,2 +chr21 25193617 . C A 0 PASS DP=70;GPV=1;SPV=1.6179e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:11,13:7,8 +chr21 25621758 . CTTTTT C 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,6:5,2 +chr21 26226543 . A T 0 PASS DP=68;GPV=1;SPV=6.2936e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,6:9,8 +chr21 27627381 . T A 0 PASS DP=163;GPV=1;SPV=0.028841;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:77,15:33,5:44,10 +chr21 27879185 . A AT 0 PASS DP=77;GPV=1;SPV=0.00074156;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:4,22:2,12:2,10 +chr21 30490177 . A T 0 PASS DP=78;GPV=1;SPV=2.9336e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:8,8:13,10 +chr21 30562390 . T TAC 0 PASS DP=39;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,2:2,1:1,1 +chr21 31473429 . CAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.19205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,4:4,1 +chr21 31735263 . GAAAAAAAAAAAAAAAA G 0 PASS DP=25;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,7:2,1 +chr21 31770100 . GTT G 0 PASS DP=32;GPV=1;SPV=0.0027123;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:2,4:2,5 +chr21 32030655 . C T 0 PASS DP=68;GPV=1;SPV=0.22736;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,4:18,2:13,2 +chr21 32255498 . C G 0 PASS DP=48;GPV=1;SPV=0.016338;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:5,2:13,7 +chr21 33876219 . T TTC 0 PASS DP=35;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr21 34135346 . G GT 0 PASS DP=34;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,11:5,8:5,3 +chr21 35769468 . AATATAT A 0 PASS DP=38;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:3,4:3,3 +chr21 35793297 . CT C 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,3:9,1 +chr21 36115398 . A AT 0 PASS DP=30;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,5:9,1 +chr21 36436742 . C CAAAAA 0 PASS DP=55;GPV=1;SPV=0.0081568;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,16:15,12:7,4 +chr21 37212564 . A T 0 PASS DP=35;GPV=1;SPV=0.055341;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,6:3,2:5,4 +chr21 38201730 . GTCTA G 0 PASS DP=29;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:5,3:5,1 +chr21 38358110 . A G 0 PASS DP=82;GPV=1;SPV=0.16972;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,4:20,1:8,3 +chr21 39682186 . TA T 0 PASS DP=56;GPV=1;SPV=0.00057614;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:13,8:9,7 +chr21 40353480 . G A 0 PASS DP=80;GPV=1;SPV=1.2902e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:21,30:11,17:10,13 +chr21 40818102 . CAAA C 0 PASS DP=39;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:4,8:5,1 +chr21 40875087 . A G 0 PASS DP=59;GPV=1;SPV=0.060214;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:18,2:8,2 +chr21 41311236 . CA C 0 PASS DP=35;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,3:6,1 +chr21 41655939 . C CCACACACA 0 PASS DP=39;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:7,7:2,3 +chr21 41671014 . C CT 0 PASS DP=61;GPV=1;SPV=0.05944;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:8,1:22,4 +chr21 41726529 . C CTCT 0 PASS DP=71;GPV=1;SPV=0.21337;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,4:12,2:11,2 +chr21 41733013 . T TACACACACACACACAC 0 PASS DP=47;GPV=1;SPV=0.034981;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:11,5:8,5 +chr21 41745315 . C T 0 PASS DP=79;GPV=1;SPV=1.1955e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:16,14:9,6 +chr21 42008571 . G A 0 PASS DP=38;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,2:2,1:4,1 +chr21 42212707 . T A 0 PASS DP=59;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,2:1,1:1,1 +chr21 42311322 . GGCAGGCAGCGCTCACAGGAGGCCCAA G 0 PASS DP=59;GPV=1;SPV=0.013462;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:18,6:7,5 +chr21 42362097 . C T 0 PASS DP=87;GPV=1;SPV=0.027692;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:17,2:26,4 +chr21 42883098 . C CA 0 PASS DP=58;GPV=1;SPV=0.0031186;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,12:10,10:4,2 +chr21 43337398 . C CCACCAT 0 PASS DP=53;GPV=1;SPV=0.0090365;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,11:7,8:8,3 +chr21 44257696 . ATAAAT A 0 PASS DP=56;GPV=1;SPV=0.026312;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,6:8,5 +chr21 44345311 . C T 0 PASS DP=98;GPV=1;SPV=1.0398e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:16,10:15,12 +chr21 44598534 . A C 0 PASS DP=88;GPV=1;SPV=1.8098e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,24:11,11:17,13 +chr21 44789384 . C CA 0 PASS DP=37;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,6:4,1 +chr21 45610068 . C T 0 PASS DP=70;GPV=1;SPV=1.637e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,9:10,7 +chr21 46321901 . CT C 0 PASS DP=31;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:13,4:3,1 +chr21 46446680 . G GTT 0 PASS DP=45;GPV=1;SPV=0.040363;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,8:13,4:9,4 +chr22 10527469 . G A 0 PASS DP=50;GPV=1;SPV=0.025076;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:3,1:17,4 +chr22 10531809 . TGA T 0 PASS DP=172;GPV=1;SPV=0.010226;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:75,13:49,8:26,5 +chr22 10612761 . T C 0 PASS DP=148;GPV=1;SPV=0.015286;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:34,1:40,9 +chr22 10641581 . TGA T 0 PASS DP=90;GPV=1;SPV=0.041309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,9:27,5:18,4 +chr22 10650005 . G GAA 0 PASS DP=175;GPV=1;SPV=0.00037634;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:73,18:47,12:26,6 +chr22 10690286 . T C 0 PASS DP=190;GPV=1;SPV=0.021635;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:92,16:32,2:60,14 +chr22 10698681 . A G 0 PASS DP=228;GPV=1;SPV=0.010064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:98,14:62,9:36,5 +chr22 10733640 . G A 0 PASS DP=622;GPV=1;SPV=0.035246;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:356:319,37:157,19:162,18 +chr22 10737705 . A G 0 PASS DP=376;GPV=1;SPV=0.016527;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:191,28:91,13:100,15 +chr22 10760350 . G A 0 PASS DP=207;GPV=1;SPV=0.0066425;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:96,15:64,12:32,3 +chr22 10760366 . T TTA 0 PASS DP=213;GPV=1;SPV=0.0088568;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:100,12:73,10:27,2 +chr22 10760379 . T A 0 PASS DP=220;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:105,14:79,11:26,3 +chr22 10765864 . A G 0 PASS DP=269;GPV=1;SPV=0.0048919;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:111,28:43,11:68,17 +chr22 10767229 . C T 0 PASS DP=239;GPV=1;SPV=0.038719;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:101,17:56,8:45,9 +chr22 10771026 . C T 0 PASS DP=328;GPV=1;SPV=0.024823;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:152,31:79,14:73,17 +chr22 10951034 . C T 0 PASS DP=171;GPV=1;SPV=0.041605;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:80,11:33,4:47,7 +chr22 11033002 . G A 0 PASS DP=361;GPV=1;SPV=0.048903;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:203:182,21:80,8:102,13 +chr22 11047586 . T TAC 0 PASS DP=333;GPV=1;SPV=0.029758;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:162:88,12:41,8:47,4 +chr22 11054290 . G A 0 PASS DP=470;GPV=1;SPV=0.038644;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:226,28:123,17:103,11 +chr22 11056829 . G T 0 PASS DP=350;GPV=1;SPV=0.032197;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:171,28:108,15:63,13 +chr22 11057590 . C A 0 PASS DP=215;GPV=1;SPV=0.016529;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:99,17:43,8:56,9 +chr22 11059377 . C T 0 PASS DP=286;GPV=1;SPV=0.034641;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:140,20:54,12:86,8 +chr22 11061247 . C T 0 PASS DP=333;GPV=1;SPV=0.046295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:162,20:93,12:69,8 +chr22 11062802 . G A 0 PASS DP=352;GPV=1;SPV=0.035925;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:162,24:80,13:82,11 +chr22 11064460 . C G 0 PASS DP=266;GPV=1;SPV=0.047192;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:123,19:41,10:82,9 +chr22 11337982 . T TTTA 0 PASS DP=307;GPV=1;SPV=0.0075827;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:146,17:86,10:60,7 +chr22 11358586 . T C 0 PASS DP=216;GPV=1;SPV=0.0025746;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:106,23:45,13:61,10 +chr22 11359091 . T C 0 PASS DP=155;GPV=1;SPV=0.001598;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:63,26:41,11:22,15 +chr22 11455564 . G C 0 PASS DP=156;GPV=1;SPV=0.011593;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:63,18:21,6:42,12 +chr22 11681998 . TA T 0 PASS DP=181;GPV=1;SPV=0.014807;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:90,16:31,5:59,11 +chr22 11703850 . G T 0 PASS DP=92;GPV=1;SPV=0.027799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:28,5:15,7 +chr22 11705259 . T C 0 PASS DP=83;GPV=1;SPV=0.0092558;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:6,2:36,7 +chr22 11714754 . G T 0 PASS DP=266;GPV=1;SPV=0.020188;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:120,15:46,3:74,12 +chr22 11791237 . G A 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,2:17,2 +chr22 11793951 . C T 0 PASS DP=133;GPV=1;SPV=0.015938;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:66,10:61,8:5,2 +chr22 11797775 . G A 0 PASS DP=265;GPV=1;SPV=0.048875;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:123,19:59,15:64,4 +chr22 11832943 . A G 0 PASS DP=144;GPV=1;SPV=0.030878;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:67,15:41,6:26,9 +chr22 11833156 . T G 0 PASS DP=201;GPV=1;SPV=0.034567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:95,21:37,15:58,6 +chr22 11834671 . T G 0 PASS DP=224;GPV=1;SPV=0.034547;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:105,13:20,5:85,8 +chr22 11841442 . A T 0 PASS DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr22 11845146 . G A 0 PASS DP=131;GPV=1;SPV=0.00082342;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:35,6:28,6 +chr22 11865156 . G A 0 PASS DP=188;GPV=1;SPV=0.048415;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:83,15:47,9:36,6 +chr22 11871637 . T C 0 PASS DP=606;GPV=1;SPV=0.026301;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:350:306,44:200,29:106,15 +chr22 11884747 . T C 0 PASS DP=137;GPV=1;SPV=0.00064121;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:55,23:44,16:11,7 +chr22 11885181 . C T 0 PASS DP=106;GPV=1;SPV=0.048436;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:16,3:34,4 +chr22 11891373 . G A 0 PASS DP=184;GPV=1;SPV=0.015085;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:90,12:40,3:50,9 +chr22 11895984 . C A 0 PASS DP=521;GPV=1;SPV=0.010284;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:306:266,40:87,13:179,27 +chr22 11906163 . C T 0 PASS DP=260;GPV=1;SPV=0.045317;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:131,16:27,2:104,14 +chr22 11909971 . C T 0 PASS DP=250;GPV=1;SPV=0.00094504;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:123,18:66,14:57,4 +chr22 11923710 . C T 0 PASS DP=169;GPV=1;SPV=0.018527;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:57,10:18,2 +chr22 11935953 . C T 0 PASS DP=383;GPV=1;SPV=0.015369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:187,28:119,24:68,4 +chr22 12033044 . A G 0 PASS DP=569;GPV=1;SPV=0.011073;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:308:271,37:126,8:145,29 +chr22 12039706 . T C 0 PASS DP=288;GPV=1;SPV=0.025824;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:123,27:56,9:67,18 +chr22 12043443 . G A 0 PASS DP=175;GPV=1;SPV=0.012671;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:80,19:46,11:34,8 +chr22 12069675 . T C 0 PASS DP=338;GPV=1;SPV=0.047797;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:177,21:118,7:59,14 +chr22 12088827 . A T 0 PASS DP=196;GPV=1;SPV=0.037554;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:96,17:52,10:44,7 +chr22 12118834 . G A 0 PASS DP=440;GPV=1;SPV=0.044889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:229:198,31:115,15:83,16 +chr22 12146047 . C A 0 PASS DP=156;GPV=1;SPV=0.0017936;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:64,26:38,23:26,3 +chr22 12149864 . AGAG A 0 PASS DP=183;GPV=1;SPV=0.044501;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:50,12:42,3 +chr22 12156454 . G A 0 PASS DP=196;GPV=1;SPV=0.042675;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:36,5:56,10 +chr22 12195122 . T G 0 PASS DP=230;GPV=1;SPV=0.01993;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:98,24:66,14:32,10 +chr22 12219625 . A T 0 PASS DP=290;GPV=1;SPV=0.035918;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:135,24:64,14:71,10 +chr22 12220317 . A G 0 PASS DP=348;GPV=1;SPV=0.028848;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:166,27:72,11:94,16 +chr22 12297193 . A G 0 PASS DP=222;GPV=1;SPV=0.00066193;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:105,18:47,7:58,11 +chr22 12351292 . A C 0 PASS DP=111;GPV=1;SPV=0.038942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:42,6:18,4 +chr22 12352794 . G A 0 PASS DP=169;GPV=1;SPV=0.049836;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:83,17:46,8:37,9 +chr22 12361039 . T A 0 PASS DP=19;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:6,3:0,0 +chr22 12387088 . C T 0 PASS DP=194;GPV=1;SPV=0.0074262;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:90,24:42,16:48,8 +chr22 12427862 . T G 0 PASS DP=173;GPV=1;SPV=0.037363;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:73,17:35,10:38,7 +chr22 12525510 . T C 0 PASS DP=79;GPV=1;SPV=0.018465;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:21,2:18,5 +chr22 12575901 . G T 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,3:12,1 +chr22 12605667 . CT C 0 PASS DP=44;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,5:9,3:8,2 +chr22 12695078 . T A 0 PASS DP=226;GPV=1;SPV=0.0035609;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:95,18:50,5:45,13 +chr22 12696778 . T TG 0 PASS DP=235;GPV=1;SPV=0.017206;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:124,16:61,4:63,12 +chr22 12710410 . C T 0 PASS DP=204;GPV=1;SPV=0.021079;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:100,19:44,7:56,12 +chr22 12721426 . CACATAAAA C 0 PASS DP=455;GPV=1;SPV=0.020099;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:249:223,26:98,10:125,16 +chr22 12799629 . C T 0 PASS DP=95;GPV=1;SPV=0.0094855;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:31,2:11,8 +chr22 12803331 . T A 0 PASS DP=93;GPV=1;SPV=0.0099003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:22,7:15,4 +chr22 12805364 . T A 0 PASS DP=278;GPV=1;SPV=0.014734;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:123,19:67,9:56,10 +chr22 12817911 . C T 0 PASS DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:0,0:31,4 +chr22 12882421 . G C 0 PASS DP=468;GPV=1;SPV=0.0005702;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:232,29:152,10:80,19 +chr22 12882822 . G A 0 PASS DP=573;GPV=1;SPV=0.035159;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:308:264,44:130,22:134,22 +chr22 12904103 . T A 0 PASS DP=110;GPV=1;SPV=0.029313;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:14,4:22,8 +chr22 13409654 . G C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 13409657 . C A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 15238702 . CAAAAAAAAAAAAAAAAAA C 0 PASS DP=45;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,9:6,5:5,4 +chr22 15525972 . A G 0 PASS DP=52;GPV=1;SPV=0.032993;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:6,2:14,9 +chr22 15535592 . T A 0 PASS DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,1:19,3 +chr22 15554048 . G A 0 PASS DP=226;GPV=1;SPV=0.042965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:115,20:42,4:73,16 +chr22 15567784 . T C 0 PASS DP=169;GPV=1;SPV=0.0096848;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:66,19:47,10:19,9 +chr22 15571833 . G A 0 PASS DP=34;GPV=1;SPV=0.01441;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,6:6,1 +chr22 15575357 . G C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr22 15628399 . C T 0 PASS DP=205;GPV=1;SPV=0.004149;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:91,23:56,17:35,6 +chr22 15670174 . C T 0 PASS DP=183;GPV=1;SPV=0.04729;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:80,17:32,9:48,8 +chr22 15713197 . T C 0 PASS DP=129;GPV=1;SPV=0.04126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:33,4:25,7 +chr22 15737153 . C T 0 PASS DP=50;GPV=1;SPV=0.31172;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:21,3:12,1 +chr22 15741615 . A G 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,5:3,4 +chr22 15745113 . CT C 0 PASS DP=101;GPV=1;SPV=0.029717;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,6:27,1:21,5 +chr22 15747068 . C T 0 PASS DP=145;GPV=1;SPV=0.01536;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:59,18:30,10:29,8 +chr22 15787990 . A G 0 PASS DP=128;GPV=1;SPV=0.012601;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:52,12:27,8:25,4 +chr22 15790824 . T A 0 PASS DP=52;GPV=1;SPV=0.0027222;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,3:11,6 +chr22 15821211 . G A 0 PASS DP=99;GPV=1;SPV=0.021168;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:26,4:21,9 +chr22 15829890 . G A 0 PASS DP=118;GPV=1;SPV=0.025801;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:50,17:25,3:25,14 +chr22 15833829 . ATTTTC A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,1:6,3 +chr22 15880948 . A C 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr22 15917376 . AAAAG A 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr22 15940680 . A G 0 PASS DP=75;GPV=1;SPV=0.055772;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:16,4:22,1 +chr22 15940780 . C T 0 PASS DP=89;GPV=1;SPV=0.038714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:16,3:24,7 +chr22 16367520 . G T 0 PASS DP=49;GPV=1;SPV=0.057853;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,7:12,5:10,2 +chr22 16523138 . CAT C 0 PASS DP=26;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,7:2,3:0,4 +chr22 16558307 . C CA 0 PASS DP=72;GPV=1;SPV=0.1382;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,5:7,1:23,4 +chr22 16622614 . GACACAC G 0 PASS DP=38;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:18,5:1,2 +chr22 16887739 . TATATATATATATAG T 0 PASS DP=50;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr22 17756436 . T C 0 PASS DP=33;GPV=1;SPV=0.22398;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:6,1:7,3 +chr22 17757402 . C CA 0 PASS DP=35;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:4,5:3,3 +chr22 18226222 . A G 0 PASS DP=39;GPV=1;SPV=0.037417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,4:4,2 +chr22 18517964 . G A 0 PASS DP=22;GPV=1;SPV=0.036364;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr22 18525675 . T C 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr22 18570148 . A ATTTTT 0 PASS DP=33;GPV=1;SPV=0.0021989;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:7,6:0,1 +chr22 18652609 . G A 0 PASS DP=128;GPV=1;SPV=0.028852;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:25,2:36,6 +chr22 18656144 . C CT 0 PASS DP=30;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:4,1:6,4 +chr22 18791976 . C T 0 PASS DP=167;GPV=1;SPV=0.035784;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:81,18:39,9:42,9 +chr22 18846493 . G T 0 PASS DP=118;GPV=1;SPV=0.0098534;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:10,5:40,1 +chr22 18911395 . A G 0 PASS DP=88;GPV=1;SPV=0.025848;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:18,4:20,10 +chr22 19341452 . A C 0 PASS DP=61;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,2:2,1:3,1 +chr22 19586736 . AAAAAACAAAAAAAAAAAAC A 0 PASS DP=71;GPV=1;SPV=0.0094582;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:17,10:13,8 +chr22 20333103 . A C 0 PASS DP=50;GPV=1;SPV=0.02099;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,9:10,8 +chr22 20357187 . G A 0 PASS DP=51;GPV=1;SPV=0.029113;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:6,6:12,4 +chr22 20358112 . G A 0 PASS DP=39;GPV=1;SPV=0.095133;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,6:10,2 +chr22 20360105 . G C 0 PASS DP=50;GPV=1;SPV=0.033698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:16,4:9,3 +chr22 20689430 . C T 0 PASS DP=73;GPV=1;SPV=0.072303;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:11,4:28,1 +chr22 21164570 . CAG C 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3 +chr22 21164577 . T G 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:10,1:15,3 +chr22 21209601 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr22 21216501 . A G 0 PASS DP=105;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:30,2:22,9 +chr22 21247741 . AT A 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,4:1,0 +chr22 21274288 . T C 0 PASS DP=73;GPV=1;SPV=0.03902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:25,4:12,2 +chr22 21283959 . C A 0 PASS DP=103;GPV=1;SPV=0.048426;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,13:18,4:24,9 +chr22 21333348 . G A 0 PASS DP=109;GPV=1;SPV=0.011133;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:23,9:21,7 +chr22 21690957 . CT C 0 PASS DP=36;GPV=1;SPV=0.10638;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:13,3:7,4 +chr22 21912604 . C CT 0 PASS DP=23;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,2:3,2 +chr22 22543000 . A C 0 PASS DP=85;GPV=1;SPV=3.9315e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:16,13:11,9 +chr22 23597502 . C CAAAAAA 0 PASS DP=50;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,6:15,5:6,1 +chr22 23980515 . T C 0 PASS DP=33;GPV=1;SPV=0.027219;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2 +chr22 23990220 . T C 0 PASS DP=82;GPV=1;SPV=0.02269;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,2:15,7 +chr22 23990273 . GA G 0 PASS DP=97;GPV=1;SPV=0.011902;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:16,2:19,9 +chr22 24257335 . C T 0 PASS DP=94;GPV=1;SPV=0.033817;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:17,6:24,1 +chr22 24659196 . C G 0 PASS DP=116;GPV=1;SPV=0.048394;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:21,2:24,10 +chr22 24675083 . T C 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,5:10,1 +chr22 25230922 . G A 0 PASS DP=60;GPV=1;SPV=3.7944e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:7,13:10,7 +chr22 25491699 . T TTC 0 PASS DP=46;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:7,2:10,2 +chr22 25491711 . G T 0 PASS DP=47;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,4:8,2:6,2 +chr22 26047125 . A AT 0 PASS DP=72;GPV=1;SPV=0.00039513;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,4:13,7 +chr22 26542240 . T TA 0 PASS DP=49;GPV=1;SPV=0.0032973;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,6:9,5 +chr22 26634592 . T C 0 PASS DP=55;GPV=1;SPV=0.049619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:13,3:6,4 +chr22 26679647 . C G 0 PASS DP=83;GPV=1;SPV=0.00019573;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:21,9:9,2 +chr22 26772544 . ACTT A 0 PASS DP=83;GPV=1;SPV=0.058975;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:22,3:21,2 +chr22 27441102 . C T 0 PASS DP=89;GPV=1;SPV=1.2532e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,5:15,8 +chr22 27501803 . C T 0 PASS DP=92;GPV=1;SPV=1.2145e-10;SS=2;SSC=99;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:21,28:13,11:8,17 +chr22 28883207 . A G 0 PASS DP=60;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,8:7,6:7,2 +chr22 28883208 . G GA 0 PASS DP=76;GPV=1;SPV=0.025745;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,6:8,5:11,1 +chr22 28883210 . G GAA 0 PASS DP=80;GPV=1;SPV=0.029606;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:15,5:15,1 +chr22 29280862 . GTTTTTTT G 0 PASS DP=43;GPV=1;SPV=0.022726;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:8,5:7,3 +chr22 29437953 . A ATT 0 PASS DP=44;GPV=1;SPV=0.0018443;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,6:5,3 +chr22 30313550 . AT A 0 PASS DP=37;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:9,3:3,2 +chr22 30497989 . A G 0 PASS DP=74;GPV=1;SPV=3.3065e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:10,8:12,8 +chr22 31145349 . G A 0 PASS DP=90;GPV=1;SPV=1.0538e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:15,7:18,10 +chr22 33203101 . C G 0 PASS DP=69;GPV=1;SPV=0.04108;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,6:16,5:19,1 +chr22 33309850 . G A 0 PASS DP=79;GPV=1;SPV=5.7731e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:11,6:7,16 +chr22 33661840 . C A 0 PASS DP=66;GPV=1;SPV=1.0577e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,7:9,7 +chr22 34073523 . C T 0 PASS DP=35;GPV=1;SPV=0.11785;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,7:7,3:6,4 +chr22 34155855 . C CTTTCTTTTCTTTTCT 0 PASS DP=45;GPV=1;SPV=0.057946;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:6,1:18,6 +chr22 34357060 . CAA C 0 PASS DP=36;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,8:3,1 +chr22 35498150 . C T 0 PASS DP=68;GPV=1;SPV=1.974e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:7,10:16,7 +chr22 35977727 . T G 0 PASS DP=30;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:5,2:3,2 +chr22 36347820 . C A 0 PASS DP=57;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,4:7,1:9,3 +chr22 37138061 . C T 0 PASS DP=76;GPV=1;SPV=3.6194e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:15,15:7,6 +chr22 37894264 . CT C 0 PASS DP=42;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4 +chr22 38923747 . C G 0 PASS DP=42;GPV=1;SPV=0.090553;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:5,1:18,5 +chr22 40982177 . CT C 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,3:4,1 +chr22 41063290 . AAG A 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,1:13,3 +chr22 41785906 . T TA 0 PASS DP=51;GPV=1;SPV=0.010406;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,11:4,4:11,7 +chr22 42407903 . CT C 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:13,4:5,1 +chr22 42839124 . A G 0 PASS DP=58;GPV=1;SPV=0.043976;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,9:4,7:14,2 +chr22 42863309 . CAAA C 0 PASS DP=40;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,8:5,1 +chr22 42896400 . T G 0 PASS DP=44;GPV=1;SPV=0.23178;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2 +chr22 43334660 . TCAC T 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,2:15,2 +chr22 43579419 . T C 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr22 43579420 . G C 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2 +chr22 43836404 . A C 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr22 44066804 . C T 0 PASS DP=41;GPV=1;SPV=0.0075858;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,2:8,5 +chr22 44763802 . C T 0 PASS DP=46;GPV=1;SPV=0.30409;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,5:8,2:4,3 +chr22 44774518 . A ATT 0 PASS DP=38;GPV=1;SPV=0.076179;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:11,4:8,2 +chr22 45670438 . CT C 0 PASS DP=29;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:3,2:4,4 +chr22 46940716 . A AC 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,2:9,3 +chr22 46940879 . T G 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,8:4,2 +chr22 47414330 . CAA C 0 PASS DP=35;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:1,3:6,3 +chr22 47467579 . G GT 0 PASS DP=62;GPV=1;SPV=0.00032526;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,15:12,9:6,6 +chr22 48636614 . C T 0 PASS DP=46;GPV=1;SPV=0.078605;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:7,3:18,3 +chr22 49091116 . G C 0 PASS DP=60;GPV=1;SPV=0.10738;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2 +chr22 49149156 . G GAGCTCTGCTGGGTGCTGGTGAGTCGGGAGCCCTGACTC 0 PASS DP=27;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:1,3:4,6 +chr22 50638443 . T C 0 PASS DP=74;GPV=1;SPV=0.035742;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:21,4:13,1 +chr22 50748762 . T A 0 PASS DP=32;GPV=1;SPV=0.017734;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,8:3,1 +chr3 996388 . GT G 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr3 1210425 . GA G 0 PASS DP=45;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,8:8,5:4,3 +chr3 1997735 . T C 0 PASS DP=24;GPV=1;SPV=0.092437;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,4:3,1 +chr3 2394784 . G GTTT 0 PASS DP=36;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:6,8:0,2 +chr3 2920420 . C T 0 PASS DP=52;GPV=1;SPV=0.00050514;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,11:7,4 +chr3 3270834 . AAAG A 0 PASS DP=55;GPV=1;SPV=0.015065;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:9,3:11,9 +chr3 5353098 . C CTT 0 PASS DP=33;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:3,6:4,2 +chr3 5914126 . A G 0 PASS DP=77;GPV=1;SPV=1.0802e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:10,12:7,8 +chr3 7385289 . ATTT A 0 PASS DP=32;GPV=1;SPV=0.0018037;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,9:3,7:1,2 +chr3 7566111 . T G 0 PASS DP=46;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:4,1:5,3 +chr3 7634478 . C T 0 PASS DP=39;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1 +chr3 8542002 . C CTT 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr3 9824737 . CT C 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,4:3,2 +chr3 10072523 . C T 0 PASS DP=87;GPV=1;SPV=1.3344e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:6,6:19,14 +chr3 11103903 . C CT 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,4:4,6 +chr3 11171123 . C CTTT 0 PASS DP=54;GPV=1;SPV=0.011263;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:9,7:11,6 +chr3 11487352 . T C 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,2:5,4 +chr3 11649895 . ATTTGGTTTGGTTTGGTTTGGTTTGG A 0 PASS DP=53;GPV=1;SPV=0.047106;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,4:11,3 +chr3 12221298 . CTT C 0 PASS DP=32;GPV=1;SPV=0.04308;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,3:1,2 +chr3 13682077 . CACGCATGTGTGTGTGAGT C 0 PASS DP=78;GPV=1;SPV=0.032693;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,6:20,1:13,5 +chr3 13682097 . T C 0 PASS DP=80;GPV=1;SPV=0.046535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:28,1:15,5 +chr3 13907950 . ATTTTTT A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,1:8,3 +chr3 14062633 . G A 0 PASS DP=81;GPV=1;SPV=4.6832e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:19,23:7,11:12,12 +chr3 14965522 . C CA 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,8:4,7:0,1 +chr3 16095206 . GTT G 0 PASS DP=40;GPV=1;SPV=0.01162;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:7,4:3,5 +chr3 17263366 . CAA C 0 PASS DP=38;GPV=1;SPV=0.02776;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:15,8:3,2 +chr3 17705338 . T G 0 PASS DP=33;GPV=1;SPV=0.033902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,6:6,3 +chr3 18798204 . CTTT C 0 PASS DP=31;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:10,3:1,1 +chr3 20756723 . G A 0 PASS DP=77;GPV=1;SPV=6.934e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:9,10:13,8 +chr3 21512145 . C CAA 0 PASS DP=47;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:7,7:5,1 +chr3 21600115 . A T 0 PASS DP=77;GPV=1;SPV=4.2818e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,6:9,5 +chr3 21855465 . C T 0 PASS DP=88;GPV=1;SPV=7.0946e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:10,8:17,10 +chr3 22164216 . CTTTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.024799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3 +chr3 22181697 . CA C 0 PASS DP=34;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,6:9,3 +chr3 22329076 . C CAA 0 PASS DP=57;GPV=1;SPV=0.02761;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,11:18,9:5,2 +chr3 23179213 . C CT 0 PASS DP=22;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:4,5:2,1 +chr3 24843900 . T TACACACAC 0 PASS DP=49;GPV=1;SPV=0.043967;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:14,8:7,1 +chr3 25210558 . T G 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,4:7,2 +chr3 26152563 . T G 0 PASS DP=62;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,2:3,1:1,1 +chr3 26512253 . C CCTTT 0 PASS DP=26;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:6,3:5,1 +chr3 27407111 . T C 0 PASS DP=45;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,2:1,1:1,1 +chr3 27965073 . CA C 0 PASS DP=28;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,4:4,1 +chr3 29498188 . T C 0 PASS DP=68;GPV=1;SPV=9.067e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,4:12,11 +chr3 29514650 . C CATATATATAT 0 PASS DP=50;GPV=1;SPV=0.048897;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:9,5:10,2 +chr3 30631621 . CT C 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,4:6,1 +chr3 34214669 . C CATATGTGTGTGT 0 PASS DP=36;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:7,4:8,1 +chr3 34417100 . C A 0 PASS DP=52;GPV=1;SPV=2.5198e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:6,10:7,2 +chr3 35635040 . A G 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,2:11,2 +chr3 36793773 . C CT 0 PASS DP=43;GPV=1;SPV=0.01472;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,8:8,3 +chr3 37407353 . C CT 0 PASS DP=41;GPV=1;SPV=0.01132;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,6:4,2 +chr3 37518093 . C CGTGTGTGTGTGTGTGTGTGT 0 PASS DP=52;GPV=1;SPV=0.029072;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:10,4:15,3 +chr3 39438589 . G A 0 PASS DP=24;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1 +chr3 39441101 . T G 0 PASS DP=33;GPV=1;SPV=0.00086785;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:7,9:2,2 +chr3 39469386 . T C 0 PASS DP=63;GPV=1;SPV=0.030856;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:9,2:12,6 +chr3 39674718 . TAAA T 0 PASS DP=34;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,10:4,2 +chr3 40377077 . AAAGGG A 0 PASS DP=24;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:8,4:0,0 +chr3 42029324 . A G 0 PASS DP=75;GPV=1;SPV=2.679e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,25:11,13:8,12 +chr3 43508943 . T TA 0 PASS DP=69;GPV=1;SPV=1.6009e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,6:7,6 +chr3 44033758 . G A 0 PASS DP=39;GPV=1;SPV=0.018593;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,7:8,3:0,4 +chr3 45427825 . C CT 0 PASS DP=42;GPV=1;SPV=0.039341;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,13:0,8:4,5 +chr3 47049323 . A G 0 PASS DP=24;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:3,1:4,1 +chr3 48056114 . G A 0 PASS DP=114;GPV=1;SPV=0.011836;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:61,9:36,3:25,6 +chr3 48074676 . T TTG 0 PASS DP=47;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,8:9,3:3,5 +chr3 49202495 . TTGTGTGTGTG T 0 PASS DP=36;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,7:7,2:5,5 +chr3 49243757 . C CA 0 PASS DP=30;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:6,3:8,1 +chr3 50010900 . C CA 0 PASS DP=38;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:5,8:5,1 +chr3 51599746 . A C 0 PASS DP=58;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:3,2:2,1:1,1 +chr3 52832750 . GT G 0 PASS DP=60;GPV=1;SPV=0.046922;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,4:10,3 +chr3 53898962 . G GTATATATATA 0 PASS DP=31;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,3:8,3 +chr3 54554870 . CTTT C 0 PASS DP=39;GPV=1;SPV=0.010266;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,8:4,3 +chr3 55388459 . TTTTG T 0 PASS DP=40;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1 +chr3 55876778 . G A 0 PASS DP=72;GPV=1;SPV=5.8531e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:13,10:7,9 +chr3 61172717 . TCTAAAATTCACTGACACTGGAGCTTAAATCCACGTGCCTAGAATGCTC T 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,3:9,6 +chr3 61748425 . G A 0 PASS DP=95;GPV=1;SPV=0.016027;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:21,2:26,5 +chr3 62819407 . C CGT 0 PASS DP=55;GPV=1;SPV=0.0081996;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:14,6:5,4 +chr3 63245680 . TGAGA T 0 PASS DP=31;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:5,3:7,2 +chr3 63314068 . CATAT C 0 PASS DP=30;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:0,4:0,2:0,2 +chr3 65023977 . T TA 0 PASS DP=25;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,2:2,3 +chr3 65109719 . G A 0 PASS DP=59;GPV=1;SPV=0.036993;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:16,2:15,5 +chr3 65957520 . C CA 0 PASS DP=37;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,10:9,9:3,1 +chr3 67197014 . C G 0 PASS DP=79;GPV=1;SPV=0.073242;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:21,3:25,3 +chr3 67782428 . T TTTTTTTG 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:0,4:8,2 +chr3 68084950 . C T 0 PASS DP=70;GPV=1;SPV=8.7132e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:13,8:10,10 +chr3 68127751 . CGGT C 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr3 68193747 . C CA 0 PASS DP=76;GPV=1;SPV=1.513e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7 +chr3 68479229 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:5,7:4,1 +chr3 68900083 . A C 0 PASS DP=49;GPV=1;SPV=0.033054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,7:4,3:5,4 +chr3 71343554 . A ATTT 0 PASS DP=39;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,11:4,8:1,3 +chr3 72183638 . CA C 0 PASS DP=62;GPV=1;SPV=0.017354;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,7:7,7 +chr3 72183640 . A G 0 PASS DP=70;GPV=1;SPV=0.0256;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,7:13,5 +chr3 75146049 . A G 0 PASS DP=41;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,2:11,3 +chr3 75637216 . A G 0 PASS DP=237;GPV=1;SPV=0.025503;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:115,17:50,8:65,9 +chr3 75645127 . G C 0 PASS DP=144;GPV=1;SPV=0.0146;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:66,21:34,12:32,9 +chr3 76910745 . G A 0 PASS DP=21;GPV=1;SPV=0.014569;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:1,6:0,2:1,4 +chr3 76962638 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.029259;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:16,6:3,1 +chr3 76977752 . C T 0 PASS DP=90;GPV=1;SPV=1.2353e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:14,11:13,5 +chr3 77126782 . C T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr3 77132923 . T A 0 PASS DP=69;GPV=1;SPV=3.6189e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:13,11:8,7 +chr3 79226543 . CT C 0 PASS DP=41;GPV=1;SPV=0.0024454;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,6:6,5 +chr3 79848847 . TCC T 0 PASS DP=18;GPV=1;SPV=0.10606;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:1,1:2,3 +chr3 81082161 . C T 0 PASS DP=74;GPV=1;SPV=0.00020455;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,4:15,7 +chr3 81990993 . T TG 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:3,3:7,3 +chr3 83025863 . G A 0 PASS DP=69;GPV=1;SPV=4.4433e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:8,9:14,11 +chr3 86171357 . C CA 0 PASS DP=39;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:10,6:3,1 +chr3 88540939 . T C 0 PASS DP=64;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:38:0,2:0,2:0,0 +chr3 89415467 . A AATATATATATATATAT 0 PASS DP=41;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,6:7,2:8,4 +chr3 89540948 . GT G 0 PASS DP=31;GPV=1;SPV=0.01458;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,5:6,4 +chr3 90172561 . T C 0 PASS DP=54;GPV=1;SPV=0.0015434;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:4,5:14,8 +chr3 90789318 . C A 0 PASS DP=103;GPV=1;SPV=0.0053729;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:10,9:39,4 +chr3 90789415 . G A 0 PASS DP=47;GPV=1;SPV=0.25039;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:1,2:26,1 +chr3 90793448 . A T 0 PASS DP=128;GPV=1;SPV=0.043644;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:33,6:26,3 +chr3 90835792 . C T 0 PASS DP=172;GPV=1;SPV=0.0015408;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:88,22:80,21:8,1 +chr3 90836180 . G A 0 PASS DP=66;GPV=1;SPV=0.07265;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,2:12,2 +chr3 90888861 . T C 0 PASS DP=598;GPV=1;SPV=0.028125;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:315:280,35:4,1:276,34 +chr3 90900911 . A C 0 PASS DP=34;GPV=1;SPV=0.2364;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,1:9,4 +chr3 90938510 . A C 0 PASS DP=100;GPV=1;SPV=0.017081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:35,4:13,6 +chr3 90951588 . G T 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:12,6:1,0 +chr3 90992803 . A G 0 PASS DP=80;GPV=1;SPV=0.034293;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:28,4:9,8 +chr3 91000939 . A G 0 PASS DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4 +chr3 91007033 . G C 0 PASS DP=131;GPV=1;SPV=0.041014;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:53,6:13,2 +chr3 91074842 . G A 0 PASS DP=62;GPV=1;SPV=0.035048;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:4,1:19,5 +chr3 91094421 . C G 0 PASS DP=123;GPV=1;SPV=0.035994;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:56,7:33,2:23,5 +chr3 91094508 . G A 0 PASS DP=132;GPV=1;SPV=0.016038;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:62,9:21,7:41,2 +chr3 91141286 . C G 0 PASS DP=169;GPV=1;SPV=0.037488;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:86,14:51,8:35,6 +chr3 91146787 . T C 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,2:3,1 +chr3 91165899 . G T 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,3:10,2 +chr3 91165902 . GA G 0 PASS DP=34;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:6,3:10,4 +chr3 91195210 . G T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr3 91226160 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr3 91283652 . C T 0 PASS DP=67;GPV=1;SPV=0.026247;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:3,10:26,3 +chr3 91557056 . C A 0 PASS DP=66;GPV=1;SPV=0.036466;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:21,4:4,2 +chr3 91740664 . G A 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1 +chr3 91764104 . T A 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:1,1:15,5 +chr3 91876564 . A T 0 PASS DP=134;GPV=1;SPV=0.037726;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:11,2:47,13 +chr3 91933099 . T C 0 PASS DP=80;GPV=1;SPV=0.034293;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:18,2:19,10 +chr3 92303938 . G A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr3 92777906 . A G 0 PASS DP=139;GPV=1;SPV=0.039121;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:38,7:36,2 +chr3 93117036 . A G 0 PASS DP=68;GPV=1;SPV=0.019617;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:27,4:8,4 +chr3 93342330 . A T 0 PASS DP=177;GPV=1;SPV=0.031855;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:76,10:58,9:18,1 +chr3 93647998 . C T 0 PASS DP=76;GPV=1;SPV=0.01904;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:7,3:28,7 +chr3 93925821 . T TA 0 PASS DP=44;GPV=1;SPV=0.0042621;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:6,6:8,5 +chr3 94553985 . A G 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,3:13,1 +chr3 94628188 . T TCTTC 0 PASS DP=27;GPV=1;SPV=0.0058824;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,13:0,2:0,11 +chr3 95317090 . T TGAGAGAGA 0 PASS DP=45;GPV=1;SPV=0.0089185;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,10:11,8:7,2 +chr3 96004721 . AT A 0 PASS DP=54;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,8:15,5:5,3 +chr3 96004740 . T TAA 0 PASS DP=50;GPV=1;SPV=0.20188;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,4:14,2:12,2 +chr3 96114203 . TAA T 0 PASS DP=63;GPV=1;SPV=0.015259;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:16,6:9,6 +chr3 96580477 . C CA 0 PASS DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:9,4:5,1 +chr3 97451743 . C T 0 PASS DP=68;GPV=1;SPV=0.00018662;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5 +chr3 98074420 . C A 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,5:3,3 +chr3 99696976 . AT A 0 PASS DP=44;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,4:15,2:3,2 +chr3 101843020 . TA T 0 PASS DP=37;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:15,3:3,2 +chr3 103756573 . T A 0 PASS DP=78;GPV=1;SPV=2.9336e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:11,10:10,8 +chr3 104653635 . GTGTGTGTA G 0 PASS DP=38;GPV=1;SPV=0.045954;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:7,5:10,5 +chr3 106707369 . T TA 0 PASS DP=54;GPV=1;SPV=0.031077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3 +chr3 107196510 . G A 0 PASS DP=52;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,4:0,1:5,3 +chr3 108955590 . TAAAAAAAAAAAA T 0 PASS DP=30;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1 +chr3 109137637 . G GTGTGTATATATATATATATA 0 PASS DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:1,1:3,3 +chr3 109333349 . CAAAA C 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,6:1,2 +chr3 109421529 . T C 0 PASS DP=43;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,1:1,3 +chr3 109529342 . G GT 0 PASS DP=46;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:15,1:13,3 +chr3 109552628 . C CT 0 PASS DP=46;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:15,9:5,1 +chr3 111149459 . A ATGTGTGTG 0 PASS DP=39;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,6:16,4:4,2 +chr3 113260686 . AC A 0 PASS DP=41;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,4:12,2 +chr3 113504571 . C CA 0 PASS DP=36;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,6:5,1 +chr3 113843049 . G GT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,5:4,1 +chr3 113849994 . G A 0 PASS DP=53;GPV=1;SPV=0.042976;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:7,5:18,11 +chr3 114426337 . CAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:4,5:1,3 +chr3 116086758 . A G 0 PASS DP=64;GPV=1;SPV=2.5592e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:4,9:18,12 +chr3 117163885 . A C 0 PASS DP=48;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,4:5,2:6,2 +chr3 118133474 . GAAAAAGAA G 0 PASS DP=51;GPV=1;SPV=0.14555;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:21,2:4,2 +chr3 118917790 . C T 0 PASS DP=81;GPV=1;SPV=0.059869;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:18,4:24,1 +chr3 119837945 . T C 0 PASS DP=52;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,2:3,1:1,1 +chr3 120201184 . G GTTTTTTTTTTTTTTTTT 0 PASS DP=18;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,3:4,2 +chr3 120649139 . CTT C 0 PASS DP=39;GPV=1;SPV=0.035343;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,2:5,3 +chr3 121395164 . T C 0 PASS DP=76;GPV=1;SPV=4.9772e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:12,9:9,9 +chr3 122281880 . A G 0 PASS DP=73;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:22,4:12,2:10,2 +chr3 122346941 . C CT 0 PASS DP=32;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,4:8,1 +chr3 122773303 . GTT G 0 PASS DP=45;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,9:7,8:3,1 +chr3 124347274 . C CTGTGTGTGTG 0 PASS DP=38;GPV=1;SPV=0.050669;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:9,2:6,5 +chr3 125215920 . GTT G 0 PASS DP=23;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1 +chr3 125897872 . C G 0 PASS DP=99;GPV=1;SPV=0.0095826;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,2:19,4 +chr3 126086407 . T TG 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:1,6:8,3 +chr3 126086417 . T G 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:2,10:7,2 +chr3 126333527 . A C 0 PASS DP=70;GPV=1;SPV=0.041993;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:17,6:10,2 +chr3 126949585 . C T 0 PASS DP=49;GPV=1;SPV=0.12446;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:14,2:14,3 +chr3 128600310 . C CT 0 PASS DP=39;GPV=1;SPV=0.0096036;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,8:5,4 +chr3 128639455 . G GA 0 PASS DP=38;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,3:4,1 +chr3 129094505 . C CT 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:2,1:3,1 +chr3 129400120 . CTTTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.01971;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:9,7:1,1 +chr3 130566811 . G T 0 PASS DP=76;GPV=1;SPV=1.1797e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,23:12,11:9,12 +chr3 130680060 . CA C 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,8:5,3 +chr3 131653446 . C A 0 PASS DP=74;GPV=1;SPV=1.1423e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:12,10:10,9 +chr3 131717874 . TTTTC T 0 PASS DP=41;GPV=1;SPV=0.18479;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:6,2:11,3 +chr3 131953239 . TAA T 0 PASS DP=61;GPV=1;SPV=3.1287e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,17:8,12:3,5 +chr3 132052774 . A C 0 PASS DP=87;GPV=1;SPV=0.02327;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:22,7:15,7 +chr3 132812112 . A C 0 PASS DP=35;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,8:5,1 +chr3 134090006 . G T 0 PASS DP=104;GPV=1;SPV=6.3104e-11;SS=2;SSC=101;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:27,33:14,15:13,18 +chr3 134204596 . C G 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1 +chr3 134204597 . A C 0 PASS DP=55;GPV=1;SPV=0.06964;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1 +chr3 134249918 . T G 0 PASS DP=62;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,5:9,4:18,1 +chr3 134399017 . T C 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4 +chr3 135099322 . C T 0 PASS DP=71;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,4:17,1:12,3 +chr3 135599612 . A G 0 PASS DP=22;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1 +chr3 135814821 . A G 0 PASS DP=49;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:11,4:9,1 +chr3 136041250 . G T 0 PASS DP=51;GPV=1;SPV=0.0019499;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:9,3:10,7 +chr3 136061920 . CTA C 0 PASS DP=34;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:12,6:3,3 +chr3 136290671 . G GTTTTTTTTTTT 0 PASS DP=27;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,2:6,2 +chr3 136447596 . AT A 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:10,5:1,2 +chr3 138051047 . A G 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,4:14,1 +chr3 138154119 . T C 0 PASS DP=49;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:10,2:11,2 +chr3 138815162 . A AATAT 0 PASS DP=40;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,9:10,4:2,5 +chr3 139257745 . A G 0 PASS DP=65;GPV=1;SPV=8.8092e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:6,7:15,5 +chr3 140251584 . G GTTCCTTTCCT 0 PASS DP=46;GPV=1;SPV=0.0023885;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:5,4:6,7 +chr3 140367515 . A C 0 PASS DP=52;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:7,4:4,3:3,1 +chr3 141421278 . C CT 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:10,4:2,2 +chr3 141973093 . G GTA 0 PASS DP=53;GPV=1;SPV=0.017005;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,12:14,7:8,5 +chr3 142391750 . ATAT A 0 PASS DP=53;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,4:9,2:7,2 +chr3 143071596 . G C 0 PASS DP=87;GPV=1;SPV=4.8163e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:26,26:14,10:12,16 +chr3 143748692 . CT C 0 PASS DP=28;GPV=1;SPV=0.0033344;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:7,7:1,3 +chr3 144825127 . C CA 0 PASS DP=43;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:15,8:3,3 +chr3 145425313 . A ATTT 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,1:5,3 +chr3 146337911 . G GAAA 0 PASS DP=49;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,14:9,11:3,3 +chr3 146797543 . C T 0 PASS DP=63;GPV=1;SPV=4.0121e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,23:8,15:8,8 +chr3 146952504 . T C 0 PASS DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,3:5,1 +chr3 147156572 . C CAAAAA 0 PASS DP=39;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,7:2,1 +chr3 148892856 . T TAGTCCCGGCTACTTGGGAGGCTG 0 PASS DP=44;GPV=1;SPV=0.022983;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,11:7,5:10,6 +chr3 148964030 . A T 0 PASS DP=65;GPV=1;SPV=0.064935;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:4,1:0,1 +chr3 149380455 . C G 0 PASS DP=66;GPV=1;SPV=0.035909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:25,4:8,2 +chr3 149625100 . C CT 0 PASS DP=30;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,5:7,2 +chr3 149696112 . C CAA 0 PASS DP=50;GPV=1;SPV=0.016771;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,9:8,8:3,1 +chr3 150028648 . C T 0 PASS DP=64;GPV=1;SPV=0.025979;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:17,3:13,3 +chr3 150428595 . A T 0 PASS DP=68;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:4,3:3,1:1,2 +chr3 151198345 . T G 0 PASS DP=77;GPV=1;SPV=0.077637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:19,3:23,2 +chr3 151423014 . A AATAT 0 PASS DP=51;GPV=1;SPV=0.0018554;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,13:8,10:8,3 +chr3 152880189 . T A 0 PASS DP=68;GPV=1;SPV=0.001166;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:10,5:20,8 +chr3 153175616 . G GT 0 PASS DP=79;GPV=1;SPV=2.9143e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:11,10:13,6 +chr3 154099718 . C CA 0 PASS DP=38;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,9:4,1 +chr3 155119742 . A T 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,2:11,2 +chr3 155125444 . CT C 0 PASS DP=50;GPV=1;SPV=0.021468;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:9,4:11,6 +chr3 156982909 . G A 0 PASS DP=48;GPV=1;SPV=0.22668;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,6:5,4:13,2 +chr3 158330838 . G A 0 PASS DP=63;GPV=1;SPV=2.4608e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,7:6,8 +chr3 159553967 . CGT C 0 PASS DP=56;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:6,6:8,3 +chr3 160008042 . C CA 0 PASS DP=30;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,5:2,3 +chr3 160018031 . A AAG 0 PASS DP=36;GPV=1;SPV=0.19205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,5:8,3:7,2 +chr3 161300205 . CA C 0 PASS DP=51;GPV=1;SPV=0.012432;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:14,8:6,4 +chr3 161841078 . G A 0 PASS DP=65;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,5:9,2:12,3 +chr3 161969282 . AT A 0 PASS DP=50;GPV=1;SPV=0.022687;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,11:10,8:10,3 +chr3 163502251 . G A 0 PASS DP=87;GPV=1;SPV=0.0047113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:5,9:1,7:4,2 +chr3 163945200 . T C 0 PASS DP=60;GPV=1;SPV=0.0012277;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,7:10,3 +chr3 164574495 . AT A 0 PASS DP=78;GPV=1;SPV=1.6008e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:11,9:14,11 +chr3 165422609 . ATATATATACATGTATATATATACATGTATATATACTG A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr3 165488881 . G GTT 0 PASS DP=16;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:4,1:0,1 +chr3 166231536 . A G 0 PASS DP=66;GPV=1;SPV=0.0003763;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:8,7:17,5 +chr3 166826852 . G A 0 PASS DP=47;GPV=1;SPV=0.0003327;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,10:7,2 +chr3 167726114 . GTTT G 0 PASS DP=48;GPV=1;SPV=0.038682;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,17:15,9:5,8 +chr3 168037064 . A ATCTATGAATGCCCATTCATAGATGGGCATTTGT 0 PASS DP=81;GPV=1;SPV=0.094604;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,7:23,4:23,3 +chr3 168515447 . C T 0 PASS DP=84;GPV=1;SPV=1.5475e-10;SS=2;SSC=98;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:18,37:7,13:11,24 +chr3 169663474 . GTCTCTCTCTCTCTC G 0 PASS DP=55;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:14,12:7,8:7,4 +chr3 170126525 . TA T 0 PASS DP=57;GPV=1;SPV=0.23136;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:14,1:22,3 +chr3 171145090 . T C 0 PASS DP=70;GPV=1;SPV=0.083322;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:25,2:18,5 +chr3 171562723 . CCTTCTTCTTCTTCTT C 0 PASS DP=42;GPV=1;SPV=0.3532;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,6:5,5:18,1 +chr3 171599827 . C CA 0 PASS DP=38;GPV=1;SPV=0.0048942;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,6:5,1 +chr3 171866586 . C CTT 0 PASS DP=32;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:7,2:7,3 +chr3 172229084 . AAC A 0 PASS DP=65;GPV=1;SPV=0.0072008;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,17:17,12:4,5 +chr3 172701449 . C CTTTTTTTTTTT 0 PASS DP=48;GPV=1;SPV=0.10315;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:11,4:16,2 +chr3 174066516 . G GTC 0 PASS DP=50;GPV=1;SPV=0.20188;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,4:21,3:5,1 +chr3 174234985 . CTTTTTTT C 0 PASS DP=31;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:9,3:6,2 +chr3 174816415 . T C 0 PASS DP=76;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,4:14,2:11,2 +chr3 174989937 . T C 0 PASS DP=84;GPV=1;SPV=0.00021276;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:15,11:20,3 +chr3 175013099 . T TATGTA 0 PASS DP=35;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,14:4,4:7,10 +chr3 175013145 . A T 0 PASS DP=38;GPV=1;SPV=0.0050131;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,1:6,8 +chr3 175173321 . T TA 0 PASS DP=91;GPV=1;SPV=0.010542;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:17,11:17,8:0,3 +chr3 176627669 . AAG A 0 PASS DP=52;GPV=1;SPV=0.032319;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:15,7:8,3 +chr3 176844403 . A AT 0 PASS DP=40;GPV=1;SPV=0.00081261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,6:3,9 +chr3 177248298 . GC G 0 PASS DP=43;GPV=1;SPV=0.25496;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,0:27,4 +chr3 179120075 . G A 0 PASS DP=83;GPV=1;SPV=3.9119e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:30,31:21,15:9,16 +chr3 179359596 . C CT 0 PASS DP=35;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,5:7,3 +chr3 179457921 . T A 0 PASS DP=79;GPV=1;SPV=0.075976;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:22,4:21,1 +chr3 179836955 . T TG 0 PASS DP=101;GPV=1;SPV=0.00032758;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,15:22,8:24,7 +chr3 179836957 . C A 0 PASS DP=99;GPV=1;SPV=4.9433e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:43,19:20,10:23,9 +chr3 180010225 . G A 0 PASS DP=64;GPV=1;SPV=0.00047641;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:13,8:14,10 +chr3 180062134 . C CTGTGTGTG 0 PASS DP=50;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,11:8,7:7,4 +chr3 180695723 . T TA 0 PASS DP=68;GPV=1;SPV=0.098102;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:18,1:23,5 +chr3 180695725 . A T 0 PASS DP=68;GPV=1;SPV=0.055212;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:18,1:21,6 +chr3 181150490 . A G 0 PASS DP=71;GPV=1;SPV=0.075107;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:20,5:23,2 +chr3 181787646 . A AT 0 PASS DP=55;GPV=1;SPV=0.049356;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:12,2:9,7 +chr3 181984974 . TTCTTTCTC T 0 PASS DP=68;GPV=1;SPV=0.019606;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:23,17:8,7:15,10 +chr3 182099491 . C CAT 0 PASS DP=35;GPV=1;SPV=0.0779;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:11,5:6,3 +chr3 182263268 . G GAA 0 PASS DP=55;GPV=1;SPV=0.23571;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,4:21,3:11,1 +chr3 182338370 . A AT 0 PASS DP=104;GPV=1;SPV=1.167e-05;SS=2;SSC=49;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:45,23:27,15:18,8 +chr3 182495384 . C T 0 PASS DP=111;GPV=1;SPV=0.00010432;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:56,28:23,15:33,13 +chr3 183608422 . G A 0 PASS DP=69;GPV=1;SPV=0.15023;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:23,5:22,1 +chr3 184067796 . T A 0 PASS DP=119;GPV=1;SPV=0.00038454;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:62,18:33,10:29,8 +chr3 185256601 . T A 0 PASS DP=106;GPV=1;SPV=1.6584e-12;SS=2;SSC=117;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:24,35:11,17:13,18 +chr3 185522636 . G GAGAGAAAGAA 0 PASS DP=61;GPV=1;SPV=0.079204;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,6:22,5:5,1 +chr3 185522654 . G GA 0 PASS DP=73;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:15,7:12,5:3,2 +chr3 186353690 . ATATCTATATCTATAT A 0 PASS DP=61;GPV=1;SPV=0.032726;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:22,4:8,9 +chr3 186353705 . T TCTA 0 PASS DP=71;GPV=1;SPV=0.17137;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:21,4:16,2:5,2 +chr3 186597603 . TTTTCTTTC T 0 PASS DP=74;GPV=1;SPV=0.0034102;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,20:5,4:19,16 +chr3 186836730 . GT G 0 PASS DP=36;GPV=1;SPV=0.029368;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,6:5,1 +chr3 186868037 . C CTT 0 PASS DP=32;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:6,7:2,1 +chr3 187402484 . T C 0 PASS DP=52;GPV=1;SPV=0.047306;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,11:17,8:7,3 +chr3 187411083 . G A 0 PASS DP=96;GPV=1;SPV=7.827e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:29,36:17,22:12,14 +chr3 187845993 . T C 0 PASS DP=51;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:0,0:5,2 +chr3 190244160 . C CA 0 PASS DP=81;GPV=1;SPV=0.020615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,11:21,7:18,4 +chr3 190729296 . A T 0 PASS DP=106;GPV=1;SPV=1.6289e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:46,21:18,11:28,10 +chr3 191661498 . TA T 0 PASS DP=40;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,12:6,8:6,4 +chr3 192378026 . T TTTCTCTCTC 0 PASS DP=55;GPV=1;SPV=0.0069124;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,10:1,3:13,7 +chr3 193706986 . C T 0 PASS DP=60;GPV=1;SPV=0.0053523;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,8:7,5:5,3 +chr3 194752055 . C CTTTTTT 0 PASS DP=63;GPV=1;SPV=0.013927;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,14:12,9:12,5 +chr3 195487344 . G C 0 PASS DP=75;GPV=1;SPV=0.050324;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:32,6:11,1 +chr3 195487359 . G T 0 PASS DP=67;GPV=1;SPV=0.12651;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:31,4:9,1 +chr3 195489448 . T C 0 PASS DP=105;GPV=1;SPV=0.033858;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:62,8:29,1:33,7 +chr3 195489724 . T A 0 PASS DP=58;GPV=1;SPV=0.0172;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:12,6:19,9 +chr3 195498073 . T G 0 PASS DP=59;GPV=1;SPV=0.036993;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,4:18,3 +chr3 195505012 . A G 0 PASS DP=79;GPV=1;SPV=0.090326;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,5:18,1:26,4 +chr3 195598434 . C CTGTGTG 0 PASS DP=51;GPV=1;SPV=0.03159;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:7,3:10,6 +chr3 195631851 . A G 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2 +chr3 195657804 . G C 0 PASS DP=128;GPV=1;SPV=0.026777;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:24,5:24,4 +chr3 195677199 . G T 0 PASS DP=60;GPV=1;SPV=0.0034858;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:11,7:10,11 +chr3 195680645 . A C 0 PASS DP=74;GPV=1;SPV=0.02191;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:18,8:15,1 +chr3 195682065 . C T 0 PASS DP=111;GPV=1;SPV=0.020173;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:31,4:19,7 +chr3 195775470 . T C 0 PASS DP=35;GPV=1;SPV=0.13206;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:0,3:20,4 +chr3 195783015 . G C 0 PASS DP=51;GPV=1;SPV=0.12909;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:17,4:14,2 +chr3 195788323 . G C 0 PASS DP=57;GPV=1;SPV=0.057459;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:20,7:14,6 +chr3 195872007 . A C 0 PASS DP=73;GPV=1;SPV=0.01451;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:26,5:15,7 +chr3 195872008 . T C 0 PASS DP=65;GPV=1;SPV=0.012454;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,11:23,5:10,6 +chr3 195913045 . G A 0 PASS DP=79;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:7,5:4,2:3,3 +chr3 195969825 . T C 0 PASS DP=123;GPV=1;SPV=0.0048554;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:58,22:25,17:33,5 +chr3 196006432 . T C 0 PASS DP=120;GPV=1;SPV=0.04515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:58,13:35,3:23,10 +chr3 196337050 . TC T 0 PASS DP=39;GPV=1;SPV=0.39982;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:15,1:11,2 +chr3 196531298 . T C 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:2,0:24,4 +chr3 196768484 . T TTATG 0 PASS DP=90;GPV=1;SPV=0.00031868;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:38,21:18,12:20,9 +chr3 196973207 . T G 0 PASS DP=100;GPV=1;SPV=0.11021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:46,8:26,4:20,4 +chr3 197384162 . C T 0 PASS DP=139;GPV=1;SPV=0.001321;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:72,19:27,12:45,7 +chr3 197623199 . A G 0 PASS DP=50;GPV=1;SPV=0.12257;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:16,4:14,2 +chr3 197897937 . A ATTTT 0 PASS DP=74;GPV=1;SPV=0.094543;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:20,4:21,3 +chr4 36988 . C T 0 PASS DP=346;GPV=1;SPV=0.035617;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:156,25:84,13:72,12 +chr4 679239 . T C 0 PASS DP=73;GPV=1;SPV=0.016027;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:17,5:9,4 +chr4 1350766 . T TA 0 PASS DP=72;GPV=1;SPV=0.0020039;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,15:9,10:12,5 +chr4 1590955 . CAT C 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr4 1687805 . C CT 0 PASS DP=25;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:1,6:4,1 +chr4 1951443 . TACACACACACACACACAC T 0 PASS DP=52;GPV=1;SPV=0.018839;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,8:9,6:6,2 +chr4 1951462 . A C 0 PASS DP=39;GPV=1;SPV=0.015939;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:13,6:3,1 +chr4 2728896 . C CT 0 PASS DP=32;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,7:3,1 +chr4 3310033 . GA G 0 PASS DP=42;GPV=1;SPV=0.19941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:9,2:18,5 +chr4 3673057 . G A 0 PASS DP=81;GPV=1;SPV=1.9248e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:13,7:16,9 +chr4 4266332 . G A 0 PASS DP=74;GPV=1;SPV=3.2558e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:11,11:17,8 +chr4 4581663 . C CA 0 PASS DP=20;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,3:0,1 +chr4 5053994 . A AATAAATAAATAAATAAATAAAT 0 PASS DP=55;GPV=1;SPV=0.013256;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:14,7:7,2 +chr4 5358700 . T C 0 PASS DP=54;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,6:5,3:1,3 +chr4 5602291 . T TA 0 PASS DP=37;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,3:7,2 +chr4 6043111 . C T 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,10:14,7 +chr4 6353413 . T C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr4 6570167 . GAA G 0 PASS DP=63;GPV=1;SPV=0.0053947;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:18,6:4,3 +chr4 6742478 . AAACG A 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,1:18,3 +chr4 6742485 . G T 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr4 6947661 . C CA 0 PASS DP=60;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,9:13,4:7,5 +chr4 7175997 . GTTT G 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,2:7,4 +chr4 7178846 . T C 0 PASS DP=37;GPV=1;SPV=0.0050388;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,6:3,3 +chr4 7373478 . ATTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.24265;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,4:4,2 +chr4 7803190 . G A 0 PASS DP=81;GPV=1;SPV=1.4682e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:12,12:7,8 +chr4 7900336 . TAGCACATTTAGCATTTAGCACATTTAG T 0 PASS DP=59;GPV=1;SPV=0.04524;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,2:11,9 +chr4 8608649 . C T 0 PASS DP=70;GPV=1;SPV=0.0065243;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,4:8,7 +chr4 8632069 . G A 0 PASS DP=174;GPV=1;SPV=0.0064202;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,22:47,5:33,17 +chr4 8657494 . C T 0 PASS DP=84;GPV=1;SPV=8.9472e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:11,7:12,13 +chr4 8765599 . C CAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=70;GPV=1;SPV=0.039878;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,10:11,9:14,1 +chr4 8829432 . G A 0 PASS DP=81;GPV=1;SPV=1.6364e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:16,11:11,10 +chr4 9038283 . C T 0 PASS DP=92;GPV=1;SPV=6.1538e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:10,5:12,15 +chr4 9272438 . C A 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr4 9416977 . GTTTT G 0 PASS DP=25;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:3,4:4,1 +chr4 11662604 . GA G 0 PASS DP=56;GPV=1;SPV=0.00049102;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:5,8:16,5 +chr4 12327953 . G A 0 PASS DP=80;GPV=1;SPV=1.011e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:14,11:12,11 +chr4 12913820 . C T 0 PASS DP=82;GPV=1;SPV=9.0328e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:14,12:12,8 +chr4 14731562 . C CA 0 PASS DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,6:2,5:3,1 +chr4 15471628 . C CA 0 PASS DP=61;GPV=1;SPV=1.2848e-08;SS=2;SSC=78;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:3,20:3,17:0,3 +chr4 16522285 . T C 0 PASS DP=72;GPV=1;SPV=0.032545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:17,5:13,5 +chr4 16919903 . G GTGTGTGTGTGTGTGTATATATA 0 PASS DP=45;GPV=1;SPV=0.097509;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,5:13,2:6,3 +chr4 17696814 . A AAATG 0 PASS DP=61;GPV=1;SPV=0.0051175;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:9,2:15,10 +chr4 17751306 . CAA C 0 PASS DP=42;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,6:5,2 +chr4 17751823 . G A 0 PASS DP=33;GPV=1;SPV=0.30409;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,4:10,1:2,3 +chr4 18534789 . A C 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,3:4,7 +chr4 18764359 . A C 0 PASS DP=57;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:0,1:1,1 +chr4 18883082 . G GTATA 0 PASS DP=26;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1 +chr4 19400971 . T C 0 PASS DP=39;GPV=1;SPV=0.041455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,1:13,3 +chr4 19541224 . G GTA 0 PASS DP=54;GPV=1;SPV=0.0040779;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,10:11,7:11,3 +chr4 25315712 . GTT G 0 PASS DP=53;GPV=1;SPV=0.032993;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,5:8,6 +chr4 26279785 . C CT 0 PASS DP=26;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:6,3:0,4 +chr4 27253614 . G A 0 PASS DP=64;GPV=1;SPV=0.005919;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:18,3:11,6 +chr4 27348730 . A ATCTCTC 0 PASS DP=32;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:1,3:12,5 +chr4 31549953 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.0032809;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,6:3,2 +chr4 31784181 . CA C 0 PASS DP=51;GPV=1;SPV=0.00025582;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,6:5,4 +chr4 31967319 . C G 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,2:11,3 +chr4 32399582 . TATATAC T 0 PASS DP=30;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr4 32829767 . A ATTTATATATTAT 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:1,2:5,2 +chr4 33419054 . CT C 0 PASS DP=45;GPV=1;SPV=9.4025e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:7,5:5,7 +chr4 34198775 . C CA 0 PASS DP=59;GPV=1;SPV=0.00046785;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,13:13,6:9,7 +chr4 34506607 . C T 0 PASS DP=85;GPV=1;SPV=1.6644e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,22:11,9:11,13 +chr4 36226988 . G C 0 PASS DP=86;GPV=1;SPV=2.4234e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:14,9:9,13 +chr4 36804353 . C G 0 PASS DP=70;GPV=1;SPV=0.00025351;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:9,5:18,8 +chr4 37604776 . G C 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:25,3:10,1 +chr4 39187419 . C CA 0 PASS DP=33;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,10:9,8:3,2 +chr4 39208303 . AT A 0 PASS DP=43;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,13:10,9:3,4 +chr4 39693657 . C CA 0 PASS DP=31;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:1,5:5,1 +chr4 40295271 . C T 0 PASS DP=78;GPV=1;SPV=0.11287;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:27,2:22,4 +chr4 40424981 . A C 0 PASS DP=74;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:1,2:1,2:0,0 +chr4 40900454 . G GT 0 PASS DP=55;GPV=1;SPV=0.0045922;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,14:10,10:7,4 +chr4 41625846 . C T 0 PASS DP=57;GPV=1;SPV=0.00019536;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,6:5,4 +chr4 41900589 . T A 0 PASS DP=69;GPV=1;SPV=1.1624e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:11,7:11,9 +chr4 41963752 . C A 0 PASS DP=23;GPV=1;SPV=0.27368;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,3:5,1:6,2 +chr4 42096568 . CT C 0 PASS DP=30;GPV=1;SPV=0.17677;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:10,3:4,2 +chr4 43996437 . T C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2 +chr4 44868702 . C CTT 0 PASS DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr4 45102348 . G GGAAAGAAAGAAA 0 PASS DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:15,3:2,3 +chr4 46439449 . T C 0 PASS DP=40;GPV=1;SPV=0.035509;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,7:10,3 +chr4 46853356 . A T 0 PASS DP=64;GPV=1;SPV=0.0014413;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:20,7:9,8 +chr4 48651289 . C CTG 0 PASS DP=26;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:6,2:3,3 +chr4 48969828 . A C 0 PASS DP=70;GPV=1;SPV=4.7047e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:6,8:11,8 +chr4 49077969 . A C 0 PASS DP=72;GPV=1;SPV=5.6435e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:9,13:15,7 +chr4 49166427 . C T 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,2:15,2 +chr4 49168066 . C A 0 PASS DP=216;GPV=1;SPV=0.043396;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:106,16:59,12:47,4 +chr4 49186951 . G A 0 PASS DP=145;GPV=1;SPV=0.040226;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:69,12:35,4:34,8 +chr4 49186952 . G A 0 PASS DP=149;GPV=1;SPV=0.017173;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:72,12:34,4:38,8 +chr4 49191933 . TTC T 0 PASS DP=292;GPV=1;SPV=0.048091;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:146,23:76,14:70,9 +chr4 49200136 . A C 0 PASS DP=87;GPV=1;SPV=0.028346;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:25,10:7,2 +chr4 49237985 . T A 0 PASS DP=86;GPV=1;SPV=0.0067584;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:30,2:14,8 +chr4 49240739 . AC A 0 PASS DP=237;GPV=1;SPV=0.041341;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:110,17:67,10:43,7 +chr4 49261063 . T C 0 PASS DP=380;GPV=1;SPV=0.032451;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:185,27:71,14:114,13 +chr4 49272511 . T A 0 PASS DP=447;GPV=1;SPV=0.048344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:255:215,40:140,18:75,22 +chr4 49493061 . A AT 0 PASS DP=607;GPV=1;SPV=0.043452;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:316:278,38:110,20:168,18 +chr4 49496659 . A G 0 PASS DP=131;GPV=1;SPV=0.042287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:56,12:22,7:34,5 +chr4 49509541 . A T 0 PASS DP=518;GPV=1;SPV=0.0062804;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:226,43:160,30:66,13 +chr4 49523914 . G C 0 PASS DP=198;GPV=1;SPV=0.027531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:83,19:47,4:36,15 +chr4 49529857 . C T 0 PASS DP=302;GPV=1;SPV=0.0063826;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:163,19:65,5:98,14 +chr4 49531294 . C T 0 PASS DP=112;GPV=1;SPV=0.041135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:25,11:23,2 +chr4 49535901 . T G 0 PASS DP=397;GPV=1;SPV=2.2475e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:167,53:87,27:80,26 +chr4 49555605 . T A 0 PASS DP=262;GPV=1;SPV=0.006048;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:132,17:77,8:55,9 +chr4 49563245 . G T 0 PASS DP=49;GPV=1;SPV=0.010338;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:10,5:10,2 +chr4 49569166 . T C 0 PASS DP=368;GPV=1;SPV=0.043105;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:200,23:108,13:92,10 +chr4 49570692 . C G 0 PASS DP=187;GPV=1;SPV=0.014016;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:81,14:26,2:55,12 +chr4 49573600 . C T 0 PASS DP=640;GPV=1;SPV=0.037546;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:376:325,51:174,32:151,19 +chr4 49575935 . G A 0 PASS DP=617;GPV=1;SPV=0.0064767;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:349:290,59:141,27:149,32 +chr4 49579650 . C A 0 PASS DP=374;GPV=1;SPV=0.022186;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:181,24:107,18:74,6 +chr4 49579667 . T C 0 PASS DP=423;GPV=1;SPV=0.021503;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:207,24:120,18:87,6 +chr4 49616846 . G A 0 PASS DP=145;GPV=1;SPV=0.044458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:67,11:43,8:24,3 +chr4 49628414 . A C 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:9,3:20,1 +chr4 49643728 . G C 0 PASS DP=591;GPV=1;SPV=0.045671;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:343:296,47:178,25:118,22 +chr4 49807936 . C T 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2 +chr4 49851921 . A C 0 PASS DP=35;GPV=1;SPV=0.023879;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1 +chr4 50599090 . T G 0 PASS DP=120;GPV=1;SPV=0.029897;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:48,13:9,1 +chr4 50660768 . T A 0 PASS DP=89;GPV=1;SPV=0.038371;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:18,1:32,6 +chr4 50839265 . G T 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,3:14,1 +chr4 50839266 . A T 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:7,4:14,1 +chr4 51247605 . T A 0 PASS DP=188;GPV=1;SPV=0.00038175;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:96,14:54,6:42,8 +chr4 51300765 . T G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr4 51454069 . C T 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr4 52465363 . C T 0 PASS DP=38;GPV=1;SPV=0.017846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,4:5,6 +chr4 52820939 . C A 0 PASS DP=89;GPV=1;SPV=0.029435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:10,3:30,2 +chr4 53254030 . A T 0 PASS DP=59;GPV=1;SPV=3.7005e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:6,8:13,8 +chr4 53857209 . C A 0 PASS DP=60;GPV=1;SPV=0.0099003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:18,8:10,1 +chr4 54458417 . T C 0 PASS DP=53;GPV=1;SPV=0.01291;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,3:8,8 +chr4 55510630 . A T 0 PASS DP=60;GPV=1;SPV=0.015123;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:12,12:7,6:5,6 +chr4 55565973 . GTT G 0 PASS DP=33;GPV=1;SPV=0.0023112;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,6:2,2 +chr4 56567442 . GT G 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,5:4,4 +chr4 59160279 . A T 0 PASS DP=77;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,4:10,2:11,2 +chr4 59396458 . A C 0 PASS DP=72;GPV=1;SPV=5.6435e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:11,10:13,10 +chr4 59594998 . C CT 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1 +chr4 60337595 . C CA 0 PASS DP=44;GPV=1;SPV=0.0060382;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:10,8:2,3 +chr4 60595364 . A G 0 PASS DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,5:11,5 +chr4 62219080 . T A 0 PASS DP=52;GPV=1;SPV=0.037815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,3:12,2 +chr4 62980196 . GA G 0 PASS DP=49;GPV=1;SPV=0.00010467;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:11,10:3,2 +chr4 63096250 . TGAGAGA T 0 PASS DP=49;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,14:8,8:3,6 +chr4 63306618 . C T 0 PASS DP=63;GPV=1;SPV=1.2971e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:5,9:15,9 +chr4 64457238 . C A 0 PASS DP=66;GPV=1;SPV=0.0001695;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,6:10,6 +chr4 64746293 . T G 0 PASS DP=54;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,2:3,1:2,1 +chr4 64888261 . TAAAAAAAAAAAAAAAA T 0 PASS DP=33;GPV=1;SPV=0.013393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:8,3:0,5 +chr4 65620108 . G GTATATATATA 0 PASS DP=41;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,7:7,6:8,1 +chr4 65640279 . T TTTTC 0 PASS DP=68;GPV=1;SPV=0.0047357;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,12:11,4:12,8 +chr4 67336359 . C A 0 PASS DP=69;GPV=1;SPV=0.022078;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,6:7,5:11,1 +chr4 67584098 . GAA G 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,4:2,3 +chr4 67590745 . A ATTTT 0 PASS DP=44;GPV=1;SPV=0.019045;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,4:5,3 +chr4 68115356 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr4 68531882 . G GTTTT 0 PASS DP=28;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,5:2,3 +chr4 68796080 . GA G 0 PASS DP=40;GPV=1;SPV=0.020314;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:17,7:1,1 +chr4 69223356 . G A 0 PASS DP=76;GPV=1;SPV=6.9241e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:11,13:12,8 +chr4 69584226 . T TAAAA 0 PASS DP=24;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,8:1,7:0,1 +chr4 69593977 . G T 0 PASS DP=60;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,4:14,2:9,2 +chr4 70363897 . C T 0 PASS DP=94;GPV=1;SPV=3.2034e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:14,9:15,10 +chr4 71011232 . CT C 0 PASS DP=34;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,6:10,1 +chr4 71443116 . C A 0 PASS DP=36;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:6,2:6,2 +chr4 71812954 . TA T 0 PASS DP=29;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,11:1,8:3,3 +chr4 71867311 . ATGTGTGTGTGTGTGTGTG A 0 PASS DP=25;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:3,5:6,2 +chr4 73035627 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:1,8:6,2 +chr4 73378217 . C A 0 PASS DP=74;GPV=1;SPV=1.7348e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:7,9:10,7 +chr4 74782763 . T C 0 PASS DP=90;GPV=1;SPV=1.2489e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:28,23:15,9:13,14 +chr4 75098906 . C CTT 0 PASS DP=59;GPV=1;SPV=0.00055962;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,25:7,13:12,12 +chr4 75487692 . CAT C 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,2:9,2 +chr4 75599548 . C CAA 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,7:3,1 +chr4 76552011 . G A 0 PASS DP=34;GPV=1;SPV=0.064336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:6,2:11,5 +chr4 76720151 . GT G 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chr4 76756417 . C CT 0 PASS DP=62;GPV=1;SPV=0.001437;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,11:11,5:14,6 +chr4 77559921 . C CAA 0 PASS DP=46;GPV=1;SPV=0.014733;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:11,9:5,2 +chr4 79009542 . G GTT 0 PASS DP=25;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:5,3:2,1 +chr4 80390934 . T C 0 PASS DP=59;GPV=1;SPV=0.041156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:13,3:11,4 +chr4 80447132 . T G 0 PASS DP=43;GPV=1;SPV=0.039556;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:6,3:12,2 +chr4 82375523 . C CA 0 PASS DP=48;GPV=1;SPV=0.0010246;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,10:10,9:5,1 +chr4 82730585 . C CT 0 PASS DP=31;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:4,7:4,1 +chr4 83020773 . C CT 0 PASS DP=44;GPV=1;SPV=0.0079526;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,10:10,8:1,2 +chr4 84894947 . C CA 0 PASS DP=48;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:8,7:5,4 +chr4 85643234 . GTTTTTTTTTTT G 0 PASS DP=30;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:12,1:3,3 +chr4 87157514 . A C 0 PASS DP=57;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,3:1,2:0,1 +chr4 87306905 . T TA 0 PASS DP=34;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:11,4:6,1 +chr4 89108575 . G A 0 PASS DP=57;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:12,1:16,3 +chr4 89600378 . A G 0 PASS DP=47;GPV=1;SPV=1.0522e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,18:1,8:6,10 +chr4 90870190 . C G 0 PASS DP=90;GPV=1;SPV=1.2773e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,25:10,17:12,8 +chr4 92131666 . T A 0 PASS DP=36;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,6:2,1:11,5 +chr4 97078479 . CATATATAT C 0 PASS DP=24;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:5,4:1,1 +chr4 99237399 . CT C 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,4:2,2 +chr4 99506397 . C T 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:2,1:20,4 +chr4 100648830 . A T 0 PASS DP=74;GPV=1;SPV=8.5814e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:7,10:14,8 +chr4 100702053 . A AC 0 PASS DP=36;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,4:6,3:0,1 +chr4 101124725 . GAGAAAGAA G 0 PASS DP=39;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:10,6:1,1 +chr4 103329256 . G A 0 PASS DP=89;GPV=1;SPV=3.9835e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:38,21:19,11:19,10 +chr4 104745124 . C T 0 PASS DP=69;GPV=1;SPV=8.5538e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:15,13:7,4 +chr4 105756582 . A G 0 PASS DP=70;GPV=1;SPV=0.054281;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,6:6,1:13,5 +chr4 105898328 . GTCTC G 0 PASS DP=37;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:10,4:7,1 +chr4 106412538 . TA T 0 PASS DP=57;GPV=1;SPV=3.4463e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,5:8,9 +chr4 107447368 . G GT 0 PASS DP=39;GPV=1;SPV=0.019168;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5 +chr4 107478346 . T TAA 0 PASS DP=62;GPV=1;SPV=0.0033619;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,9:13,6:6,3 +chr4 108694191 . C T 0 PASS DP=66;GPV=1;SPV=8.8825e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:15,9:10,9 +chr4 108781537 . A ATTTTTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,2:4,4 +chr4 109569497 . C CT 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,3:4,5 +chr4 110884300 . CAT C 0 PASS DP=21;GPV=1;SPV=0.030702;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:1,1:2,3 +chr4 111127550 . A T 0 PASS DP=84;GPV=1;SPV=1.8683e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:30,27:16,11:14,16 +chr4 111253923 . C T 0 PASS DP=25;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,3:3,2 +chr4 113567168 . C CT 0 PASS DP=23;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr4 113605019 . T C 0 PASS DP=78;GPV=1;SPV=8.0013e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:9,9:9,13 +chr4 114754988 . G GT 0 PASS DP=85;GPV=1;SPV=6.8419e-08;SS=2;SSC=71;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:13,8:10,12 +chr4 114760198 . G A 0 PASS DP=48;GPV=1;SPV=7.4178e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:3,7:6,9 +chr4 118238155 . A G 0 PASS DP=44;GPV=1;SPV=0.042556;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,7:7,5:5,2 +chr4 118627860 . T A 0 PASS DP=100;GPV=1;SPV=0.041297;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:30,9:14,6 +chr4 118701183 . G GTT 0 PASS DP=64;GPV=1;SPV=0.012614;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,10:13,5:8,5 +chr4 118712619 . CA C 0 PASS DP=45;GPV=1;SPV=0.013751;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:14,7:3,4 +chr4 119260950 . CTTTTTT C 0 PASS DP=38;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:7,3:2,4 +chr4 119505921 . TCTC T 0 PASS DP=73;GPV=1;SPV=3.883e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:13,6:14,11 +chr4 120075462 . G C 0 PASS DP=77;GPV=1;SPV=2.6543e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,9:12,6 +chr4 122444130 . C CT 0 PASS DP=31;GPV=1;SPV=0.074501;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:12,6:2,2 +chr4 124351183 . C CTTT 0 PASS DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr4 125828134 . A C 0 PASS DP=62;GPV=1;SPV=0.0053999;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:19,10:4,7 +chr4 127088245 . T TAAA 0 PASS DP=34;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,6:4,2 +chr4 127288170 . G GACACACACAC 0 PASS DP=64;GPV=1;SPV=0.045253;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,8:10,4:13,4 +chr4 127895565 . G A 0 PASS DP=50;GPV=1;SPV=0.017316;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:9,4:12,11 +chr4 128166930 . TTCTCTCTC T 0 PASS DP=47;GPV=1;SPV=0.022587;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:5,5:8,2 +chr4 128264482 . C T 0 PASS DP=97;GPV=1;SPV=1.662e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:29,25:12,11:17,14 +chr4 128616674 . C CAAAAAAAAAA 0 PASS DP=23;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:5,4:1,1 +chr4 130999757 . C CT 0 PASS DP=23;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,4:3,2 +chr4 131155329 . C CACACACACACACACACACACAT 0 PASS DP=46;GPV=1;SPV=0.092279;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,5:12,3:8,2 +chr4 131980985 . C T 0 PASS DP=62;GPV=1;SPV=0.00021002;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,5:14,9 +chr4 133214730 . CTTT C 0 PASS DP=31;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,6:9,3:4,3 +chr4 134257697 . A G 0 PASS DP=73;GPV=1;SPV=0.026469;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,7:9,4:5,3 +chr4 135352112 . C CT 0 PASS DP=42;GPV=1;SPV=0.013612;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:14,3:5,7 +chr4 135539116 . AT A 0 PASS DP=43;GPV=1;SPV=0.0033813;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:12,6:3,2 +chr4 136752910 . T C 0 PASS DP=66;GPV=1;SPV=0.00019465;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,6:12,10 +chr4 137904686 . C T 0 PASS DP=78;GPV=1;SPV=9.5082e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:11,7:12,11 +chr4 138368321 . A T 0 PASS DP=82;GPV=1;SPV=3.4968e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:7,5:13,14 +chr4 138582710 . G A 0 PASS DP=71;GPV=1;SPV=6.5042e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:9,11:14,7 +chr4 139114561 . T TCCAGTCTCACACACACACACA 0 PASS DP=55;GPV=1;SPV=0.011519;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,12:13,4:8,8 +chr4 139579034 . CTTTCTTT C 0 PASS DP=53;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,4:6,3:7,1 +chr4 140083969 . G C 0 PASS DP=43;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1 +chr4 140083971 . G C 0 PASS DP=43;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1 +chr4 140835726 . T A 0 PASS DP=61;GPV=1;SPV=0.17513;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:25,1:11,3 +chr4 140852408 . TTTATTATTA T 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,1:8,9 +chr4 141539521 . T C 0 PASS DP=54;GPV=1;SPV=3.777e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:4,10:6,5 +chr4 143109062 . CT C 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,3:7,5 +chr4 143335243 . C CTTTT 0 PASS DP=26;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:4,4:1,2 +chr4 144323307 . A AATTTGAGGATAATATCCTCAAATAT 0 PASS DP=66;GPV=1;SPV=0.043916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,11:13,4:9,7 +chr4 144473366 . C CA 0 PASS DP=50;GPV=1;SPV=0.016244;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:13,6:4,4 +chr4 144681421 . CTT C 0 PASS DP=26;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:2,6:4,3 +chr4 146172129 . CT C 0 PASS DP=39;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:6,2:11,2 +chr4 146286200 . G A 0 PASS DP=56;GPV=1;SPV=0.021517;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,6:13,3 +chr4 147358353 . A G 0 PASS DP=39;GPV=1;SPV=0.24893;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,3:15,1 +chr4 148457975 . AT A 0 PASS DP=73;GPV=1;SPV=3.4813e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,15:18,7:7,8 +chr4 148807689 . T G 0 PASS DP=57;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,4:12,3:1,1 +chr4 149331280 . CT C 0 PASS DP=32;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,8:8,7:2,1 +chr4 150674297 . A G 0 PASS DP=64;GPV=1;SPV=2.6188e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:13,12:9,8 +chr4 154530741 . TA T 0 PASS DP=32;GPV=1;SPV=0.059881;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:14,5:1,1 +chr4 157202962 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:7,5:2,1 +chr4 157248567 . G A 0 PASS DP=20;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1 +chr4 157248568 . T C 0 PASS DP=20;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1 +chr4 157274921 . T C 0 PASS DP=47;GPV=1;SPV=0.048897;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:16,3:3,4 +chr4 157486670 . T G 0 PASS DP=82;GPV=1;SPV=0.012653;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:26,3:15,5 +chr4 157486679 . A G 0 PASS DP=81;GPV=1;SPV=0.047685;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:25,3:15,2 +chr4 158529245 . TTG T 0 PASS DP=73;GPV=1;SPV=0.016036;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:17,2:20,6 +chr4 158964157 . C A 0 PASS DP=74;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,4:15,1:7,3 +chr4 162223330 . C CA 0 PASS DP=73;GPV=1;SPV=0.004173;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,13:21,10:4,3 +chr4 164514816 . C T 0 PASS DP=75;GPV=1;SPV=8.0734e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:20,23:9,14:11,9 +chr4 164873353 . AG A 0 PASS DP=19;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:4,1:0,1 +chr4 166195617 . C T 0 PASS DP=79;GPV=1;SPV=9.0569e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:14,9:10,10 +chr4 166665288 . A AT 0 PASS DP=52;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:14,2:7,2 +chr4 166856811 . G T 0 PASS DP=50;GPV=1;SPV=0.053858;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,1:14,6 +chr4 166856812 . A C 0 PASS DP=70;GPV=1;SPV=0.053838;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:19,1:19,5 +chr4 168767542 . A AT 0 PASS DP=56;GPV=1;SPV=0.0087537;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,9:12,5 +chr4 168971437 . T A 0 PASS DP=44;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,2:2,1:3,1 +chr4 169428351 . G GATATATATATATATAT 0 PASS DP=43;GPV=1;SPV=0.23453;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:12,3:13,1 +chr4 169720526 . T TTCTCTCTCTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.064412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,8:11,4:14,4 +chr4 170478430 . G T 0 PASS DP=42;GPV=1;SPV=0.017818;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:12,3:6,4 +chr4 170478449 . TAG T 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,1:6,4 +chr4 170478480 . G T 0 PASS DP=32;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,1:7,3 +chr4 170581068 . CTTTTTTTT C 0 PASS DP=38;GPV=1;SPV=0.020124;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:4,5:3,3 +chr4 170915196 . A AAG 0 PASS DP=37;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,7:6,5:2,2 +chr4 173399546 . G T 0 PASS DP=59;GPV=1;SPV=0.079081;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:14,3:21,4 +chr4 174273323 . TA T 0 PASS DP=42;GPV=1;SPV=0.0041286;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,2:4,4 +chr4 174909366 . T C 0 PASS DP=52;GPV=1;SPV=0.11497;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:16,3:16,4 +chr4 175680388 . T A 0 PASS DP=65;GPV=1;SPV=0.0059953;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:16,4:12,4 +chr4 178559825 . CAAAAAAAAAAA C 0 PASS DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,4:2,1 +chr4 180245137 . C T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,3:14,4 +chr4 180818931 . C CTTTTT 0 PASS DP=22;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:2,3:5,1 +chr4 181605480 . GAGAAAGAAAGAAAGAA G 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr4 181953298 . G C 0 PASS DP=55;GPV=1;SPV=0.045792;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,7:6,5:6,2 +chr4 182030528 . T C 0 PASS DP=84;GPV=1;SPV=1.0729e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:19,10:11,7 +chr4 182098963 . C T 0 PASS DP=31;GPV=1;SPV=0.0023306;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,1:1,5 +chr4 182220384 . A C 0 PASS DP=45;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,2:2,1:1,1 +chr4 182456905 . C A 0 PASS DP=76;GPV=1;SPV=9.9016e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:17,21:8,10:9,11 +chr4 183045502 . A G 0 PASS DP=103;GPV=1;SPV=7.6151e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:36,20:18,9:18,11 +chr4 183198789 . T TAA 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:4,8:3,4 +chr4 183341967 . CTT C 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,2:4,4 +chr4 185216513 . GT G 0 PASS DP=40;GPV=1;SPV=0.01327;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:11,7:6,3 +chr4 185877871 . AAAC A 0 PASS DP=44;GPV=1;SPV=0.017166;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,4:10,3 +chr4 186446583 . C A 0 PASS DP=77;GPV=1;SPV=4.2952e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:11,6:17,9 +chr4 186475348 . GAA G 0 PASS DP=48;GPV=1;SPV=0.073845;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:20,5:6,1 +chr4 186478438 . A C 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,2:11,2 +chr4 186651039 . TTTA T 0 PASS DP=62;GPV=1;SPV=0.058259;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,4:14,1 +chr4 187055034 . A T 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,3:16,1 +chr4 187630481 . A C 0 PASS DP=73;GPV=1;SPV=2.0618e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:13,9:9,9 +chr4 188780081 . CAAAAA C 0 PASS DP=34;GPV=1;SPV=0.0050575;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:8,5:0,1 +chr4 188936870 . G A 0 PASS DP=47;GPV=1;SPV=0.013649;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,3:11,5 +chr4 188974270 . T C 0 PASS DP=32;GPV=1;SPV=0.1371;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:9,1:5,2 +chr4 189490834 . C G 0 PASS DP=33;GPV=1;SPV=0.20894;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,2:8,1 +chr4 189743894 . G A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,1:18,3 +chr4 189836362 . ACACCAT A 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:12,3:19,1 +chr4 189881455 . A C 0 PASS DP=476;GPV=1;SPV=0.014385;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:299:254,45:98,23:156,22 +chr4 190025179 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,1:4,5 +chr4 190044812 . A G 0 PASS DP=76;GPV=1;SPV=0.031895;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,2:13,2 +chr4 190054909 . CCTGTA C 0 PASS DP=61;GPV=1;SPV=0.027384;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,5:10,3 +chr4 190095436 . C G 0 PASS DP=198;GPV=1;SPV=0.0085394;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:96,13:47,6:49,7 +chr4 190118950 . G A 0 PASS DP=162;GPV=1;SPV=0.0039489;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:74,11:32,5:42,6 +chr5 59933 . TGTA T 0 PASS DP=42;GPV=1;SPV=0.0052836;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,9:7,3:6,6 +chr5 328255 . A AT 0 PASS DP=28;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,3:4,1 +chr5 436256 . GAGGGACCCACCACCCCT G 0 PASS DP=100;GPV=1;SPV=0.03948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:17,1:24,5 +chr5 608766 . TGTGGGAGCGTGCGCTGGGATGGGGAGGGGTCACTGTGAGCACGGTGCGTC T 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:8,1:18,5 +chr5 629839 . C T 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr5 629945 . G GT 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,2:7,8 +chr5 710921 . T TGA 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,1:9,4 +chr5 1042652 . GTGAGTTAGTGAA G 0 PASS DP=37;GPV=1;SPV=0.35726;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,4:9,2:9,2 +chr5 2794836 . A T 0 PASS DP=64;GPV=1;SPV=8.3106e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:3,6:16,10 +chr5 2798125 . G T 0 PASS DP=63;GPV=1;SPV=2.1412e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,23:9,10:12,13 +chr5 2940178 . A T 0 PASS DP=70;GPV=1;SPV=1.2005e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:7,5:14,9 +chr5 3324107 . T A 0 PASS DP=111;GPV=1;SPV=0.044728;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:53,10:16,6:37,4 +chr5 3751219 . C T 0 PASS DP=62;GPV=1;SPV=8.063e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:10,8:8,8 +chr5 4009290 . TGATA T 0 PASS DP=54;GPV=1;SPV=0.10265;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,2:13,3 +chr5 4583580 . C T 0 PASS DP=99;GPV=1;SPV=1.3648e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:32,22:13,14:19,8 +chr5 5305111 . CCACA C 0 PASS DP=28;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:6,3:7,1 +chr5 5305356 . C CAG 0 PASS DP=49;GPV=1;SPV=0.16972;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,3:10,1 +chr5 5817171 . TAGATAGATGATA T 0 PASS DP=55;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,4:12,3:8,1 +chr5 7016947 . CA C 0 PASS DP=48;GPV=1;SPV=0.028009;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,8:7,6:3,2 +chr5 7112066 . G A 0 PASS DP=82;GPV=1;SPV=1.9746e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:17,8:14,10 +chr5 7989144 . C T 0 PASS DP=73;GPV=1;SPV=2.3827e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:16,11:10,6 +chr5 9704363 . GA G 0 PASS DP=58;GPV=1;SPV=1.4592e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,10:6,6 +chr5 9796721 . GA G 0 PASS DP=57;GPV=1;SPV=0.00086785;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:9,11:5,9:4,2 +chr5 10758417 . T C 0 PASS DP=62;GPV=1;SPV=0.0076062;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,7:10,7 +chr5 12333595 . A ATATATG 0 PASS DP=53;GPV=1;SPV=0.0050975;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,9:10,4:5,5 +chr5 12628150 . T TA 0 PASS DP=38;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,5:4,4:2,1 +chr5 13347332 . CA C 0 PASS DP=52;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:15,9:3,2 +chr5 13379088 . CAT C 0 PASS DP=59;GPV=1;SPV=0.011905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:0,6:0,2:0,4 +chr5 13422513 . T TA 0 PASS DP=24;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:7,3:2,2 +chr5 14116340 . CT C 0 PASS DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr5 14793007 . A AAAAT 0 PASS DP=27;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr5 14975431 . C CTTTTTT 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2 +chr5 15188580 . T C 0 PASS DP=65;GPV=1;SPV=1.1848e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:10,10:8,10 +chr5 15662852 . G T 0 PASS DP=59;GPV=1;SPV=8.4091e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:7,10:10,7 +chr5 15664469 . CT C 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,3:10,2 +chr5 15942324 . CA C 0 PASS DP=43;GPV=1;SPV=0.018839;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,5:4,3 +chr5 16299826 . G A 0 PASS DP=78;GPV=1;SPV=1.6639e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:11,7:13,11 +chr5 16792110 . TACAC T 0 PASS DP=54;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:21,3:10,1 +chr5 17137530 . C CT 0 PASS DP=62;GPV=1;SPV=0.00013176;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:7,8:15,9 +chr5 17583646 . T C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr5 17849095 . CTTCCTTCCTTCCTTCCTTCT C 0 PASS DP=21;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:0,1:2,4 +chr5 17899698 . TTATC T 0 PASS DP=58;GPV=1;SPV=0.057437;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:21,4:10,2 +chr5 17899720 . A G 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,4:7,1 +chr5 18149172 . A C 0 PASS DP=68;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:38:0,2:0,0:0,2 +chr5 18507863 . G A 0 PASS DP=70;GPV=1;SPV=2.7295e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:8,12:14,9 +chr5 18976341 . ATG A 0 PASS DP=52;GPV=1;SPV=0.065377;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:9,1:17,4 +chr5 20056680 . C CT 0 PASS DP=27;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,11:6,10:0,1 +chr5 20271560 . G A 0 PASS DP=74;GPV=1;SPV=1.0865e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:8,8:12,8 +chr5 20757924 . C A 0 PASS DP=104;GPV=1;SPV=0.025831;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:21,3:22,6 +chr5 20881099 . G GTT 0 PASS DP=25;GPV=1;SPV=0.0060573;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,2:1,5 +chr5 21489456 . TA T 0 PASS DP=105;GPV=1;SPV=0.04801;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:55,9:33,5:22,4 +chr5 22036158 . A G 0 PASS DP=75;GPV=1;SPV=3.5059e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:17,28:10,9:7,19 +chr5 23521237 . G A 0 PASS DP=77;GPV=1;SPV=2.7585e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:10,6:13,10 +chr5 23965892 . G A 0 PASS DP=79;GPV=1;SPV=1.9236e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:13,8:5,7 +chr5 24563597 . C CAAAAAA 0 PASS DP=37;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:5,8:1,1 +chr5 24651517 . C T 0 PASS DP=75;GPV=1;SPV=3.9467e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:11,12:14,8 +chr5 25020096 . ATCCCTTAAAAAATGT A 0 PASS DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr5 25235811 . CAT C 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr5 25576719 . CCTTT C 0 PASS DP=50;GPV=1;SPV=0.00019727;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,11:8,2:6,9 +chr5 26606116 . A G 0 PASS DP=81;GPV=1;SPV=1.1801e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:15,13:9,4 +chr5 26955604 . C G 0 PASS DP=63;GPV=1;SPV=0.15343;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,1:20,3 +chr5 27968898 . T C 0 PASS DP=53;GPV=1;SPV=0.00751;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,5:11,9 +chr5 28251892 . AAG A 0 PASS DP=58;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,4:5,3:3,1 +chr5 28972704 . G C 0 PASS DP=71;GPV=1;SPV=0.00058098;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:11,9:21,9 +chr5 29013269 . G C 0 PASS DP=87;GPV=1;SPV=2.6556e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:6,12:17,9 +chr5 29429312 . G GAAAAAAAA 0 PASS DP=49;GPV=1;SPV=0.013474;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,10:8,9:8,1 +chr5 29862401 . G A 0 PASS DP=91;GPV=1;SPV=1.1225e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,22:13,10:11,12 +chr5 30153936 . C T 0 PASS DP=83;GPV=1;SPV=0.0005395;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:20,7:15,5 +chr5 30707695 . C CA 0 PASS DP=36;GPV=1;SPV=0.074026;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:11,3:4,1 +chr5 31777926 . G A 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,2:13,2 +chr5 32281899 . C CAA 0 PASS DP=54;GPV=1;SPV=0.022955;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,8:9,4 +chr5 32499604 . T TTTCTTTCTTTCTTTC 0 PASS DP=66;GPV=1;SPV=0.046405;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,8:19,3:11,5 +chr5 32551720 . T C 0 PASS DP=71;GPV=1;SPV=6.6375e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,18:10,10:3,8 +chr5 33097535 . G A 0 PASS DP=85;GPV=1;SPV=6.9536e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:18,9:9,11 +chr5 34087880 . G C 0 PASS DP=93;GPV=1;SPV=0.033526;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,6:20,3 +chr5 35014452 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:6,7:3,1 +chr5 35433032 . G T 0 PASS DP=61;GPV=1;SPV=8.0199e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:9,10:8,5 +chr5 35824242 . G A 0 PASS DP=70;GPV=1;SPV=2.5343e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:9,8:15,8 +chr5 36322414 . T C 0 PASS DP=55;GPV=1;SPV=0.0035678;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:10,7:8,9 +chr5 36738638 . T C 0 PASS DP=44;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:15,1:10,4 +chr5 38333916 . GT G 0 PASS DP=27;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,3:3,2 +chr5 39781530 . C CAA 0 PASS DP=52;GPV=1;SPV=0.00083905;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,14:3,12:1,2 +chr5 40023602 . C CT 0 PASS DP=29;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,8:6,6:2,2 +chr5 42310527 . CT C 0 PASS DP=16;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:4,1:0,1 +chr5 42579128 . TA T 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,1:11,3 +chr5 42650578 . C CATAT 0 PASS DP=66;GPV=1;SPV=0.00030514;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:11,18:7,11:4,7 +chr5 42739692 . C T 0 PASS DP=18;GPV=1;SPV=0.0018511;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,9:1,4:0,5 +chr5 42900260 . T A 0 PASS DP=73;GPV=1;SPV=2.9862e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:18,24:2,14:16,10 +chr5 42902678 . ATTT A 0 PASS DP=25;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,6:5,1 +chr5 43198209 . C T 0 PASS DP=48;GPV=1;SPV=0.20154;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,6:3,4:23,2 +chr5 43560061 . A T 0 PASS DP=51;GPV=1;SPV=0.1439;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,2:15,2 +chr5 44060310 . C G 0 PASS DP=85;GPV=1;SPV=5.8369e-10;SS=2;SSC=92;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:12,11:6,12 +chr5 44451477 . TTG T 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr5 45890883 . T G 0 PASS DP=51;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:19,3:9,1 +chr5 46582296 . G A 0 PASS DP=246;GPV=1;SPV=0.027768;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:126,16:36,4:90,12 +chr5 46667716 . G T 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chr5 46672473 . C A 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4 +chr5 46721513 . T G 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:4,3:28,1 +chr5 46746519 . T G 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,7:2,1 +chr5 47115870 . C A 0 PASS DP=248;GPV=1;SPV=0.033326;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:110,19:39,14:71,5 +chr5 47119711 . C T 0 PASS DP=90;GPV=1;SPV=0.017792;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:22,6:28,3 +chr5 47143865 . C A 0 PASS DP=107;GPV=1;SPV=0.017331;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,15:37,11:11,4 +chr5 47210350 . T A 0 PASS DP=174;GPV=1;SPV=0.008825;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:55,11:19,9 +chr5 47210473 . T A 0 PASS DP=214;GPV=1;SPV=0.031909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:92,21:42,4:50,17 +chr5 49661142 . C T 0 PASS DP=337;GPV=1;SPV=0.016263;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:159,37:77,19:82,18 +chr5 50621975 . A AAAAGAAAGAAAGAAAG 0 PASS DP=46;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,10:12,9:4,1 +chr5 50905586 . G A 0 PASS DP=95;GPV=1;SPV=1.6642e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:31,23:19,15:12,8 +chr5 50913028 . C A 0 PASS DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:6,8:10,7 +chr5 51991814 . T A 0 PASS DP=82;GPV=1;SPV=1.0109e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:11,5:9,17 +chr5 54092047 . A AACACACACACACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.022251;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:9,6:10,2 +chr5 54549504 . A G 0 PASS DP=90;GPV=1;SPV=2.9279e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,9:14,7 +chr5 54925925 . CT C 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,6:1,2 +chr5 55372892 . ATGTG A 0 PASS DP=43;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,10:5,9:4,1 +chr5 56173541 . CCTCT C 0 PASS DP=25;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,7:1,4:5,3 +chr5 57138557 . T C 0 PASS DP=34;GPV=1;SPV=0.094639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,2:10,3 +chr5 59806844 . C T 0 PASS DP=79;GPV=1;SPV=5.5655e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:10,8:15,16 +chr5 61942589 . A G 0 PASS DP=16;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,3:0,3:0,0 +chr5 62236304 . A G 0 PASS DP=70;GPV=1;SPV=0.041472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,3:18,2 +chr5 62248035 . C T 0 PASS DP=70;GPV=1;SPV=0.022833;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:18,1:19,7 +chr5 64937921 . C CT 0 PASS DP=35;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2 +chr5 65707395 . T TAC 0 PASS DP=62;GPV=1;SPV=0.03548;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,8:17,4:9,4 +chr5 67049035 . A ACACG 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chr5 67339629 . C CCTTTCTTCCTTCCTTCTTTCCTTCCTTCCTTT 0 PASS DP=47;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,7:5,3:9,4 +chr5 68237131 . C T 0 PASS DP=94;GPV=1;SPV=1.5429e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,25:11,18:13,7 +chr5 68240687 . C T 0 PASS DP=70;GPV=1;SPV=2.6883e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:7,8:14,10 +chr5 69377612 . TAC T 0 PASS DP=37;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:11,3:9,1 +chr5 69515608 . G A 0 PASS DP=44;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,1:13,4 +chr5 69610330 . A G 0 PASS DP=57;GPV=1;SPV=0.20823;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,3:13,1 +chr5 69906805 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr5 70503142 . G C 0 PASS DP=50;GPV=1;SPV=0.15614;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:0,0:28,4 +chr5 70678178 . G A 0 PASS DP=171;GPV=1;SPV=0.046569;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:74,13:34,9:40,4 +chr5 70755720 . C CACAA 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr5 72130276 . T A 0 PASS DP=91;GPV=1;SPV=5.6452e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:28,25:12,14:16,11 +chr5 72522028 . TTATATA T 0 PASS DP=19;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2 +chr5 74111166 . A AAT 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,2:3,4 +chr5 74702067 . CTTT C 0 PASS DP=24;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,3:3,2 +chr5 75200297 . C CT 0 PASS DP=39;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:5,6:8,3 +chr5 76503174 . C CTT 0 PASS DP=26;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,5:2,2:4,3 +chr5 77945005 . A AG 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:16,3:17,2 +chr5 77948482 . C CA 0 PASS DP=43;GPV=1;SPV=0.039653;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:8,5:6,1 +chr5 78455041 . AT A 0 PASS DP=76;GPV=1;SPV=0.052957;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:44,7:18,2:26,5 +chr5 78455090 . C G 0 PASS DP=67;GPV=1;SPV=0.044064;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:13,2:24,5 +chr5 78749499 . A C 0 PASS DP=47;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:0,0:1,2 +chr5 78753391 . T C 0 PASS DP=64;GPV=1;SPV=0.10395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,1:15,3 +chr5 78848273 . A T 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,1:3,7 +chr5 79138859 . T TTATATATATA 0 PASS DP=57;GPV=1;SPV=0.0016175;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,11:9,7:13,4 +chr5 79456145 . C CA 0 PASS DP=34;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,9:3,6:0,3 +chr5 79606106 . CA C 0 PASS DP=41;GPV=1;SPV=0.032529;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:18,6:2,2 +chr5 79782528 . T C 0 PASS DP=37;GPV=1;SPV=0.032095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,2:7,4 +chr5 79842655 . G A 0 PASS DP=84;GPV=1;SPV=1.467e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:11,11:21,8 +chr5 80388623 . C CT 0 PASS DP=33;GPV=1;SPV=0.010143;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,14:4,11:4,3 +chr5 80602612 . G GATATAT 0 PASS DP=45;GPV=1;SPV=0.013474;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:11,8:5,2 +chr5 80654917 . C G 0 PASS DP=64;GPV=1;SPV=0.10395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1 +chr5 81296613 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr5 82059664 . G T 0 PASS DP=81;GPV=1;SPV=0.042579;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:18,3:18,4 +chr5 82592361 . TCCTCC T 0 PASS DP=33;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,3:12,1 +chr5 83550887 . C CAAAA 0 PASS DP=25;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1 +chr5 83854054 . C CT 0 PASS DP=29;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:6,3:1,2 +chr5 84160742 . TTTCTTTCCTTTCC T 0 PASS DP=44;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:4,3:5,3 +chr5 84340548 . A C 0 PASS DP=21;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:4,1:3,1 +chr5 84800768 . A AGAAGGAAGGAAG 0 PASS DP=32;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,3:1,1 +chr5 85167738 . GGTTT G 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1 +chr5 86206231 . A AT 0 PASS DP=43;GPV=1;SPV=0.024795;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr5 86348377 . T TA 0 PASS DP=79;GPV=1;SPV=0.043401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:15,5:17,1 +chr5 88079405 . A G 0 PASS DP=64;GPV=1;SPV=0.03619;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:14,3:20,4 +chr5 88215877 . T C 0 PASS DP=95;GPV=1;SPV=7.5915e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,22:17,11:12,11 +chr5 88702983 . T TAA 0 PASS DP=48;GPV=1;SPV=0.018961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:16,6:1,2 +chr5 89568337 . ATT A 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2 +chr5 90114719 . AAT A 0 PASS DP=64;GPV=1;SPV=0.0031357;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:13,8:10,9 +chr5 90281470 . C T 0 PASS DP=70;GPV=1;SPV=8.5986e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,20:9,12:5,8 +chr5 91014136 . C CCACACACACACACACA 0 PASS DP=33;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:10,5:6,1 +chr5 91179947 . A AG 0 PASS DP=30;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:7,3:1,4 +chr5 92113985 . GTATATATA G 0 PASS DP=24;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,2:2,2 +chr5 92346045 . C T 0 PASS DP=36;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:6,1:0,1 +chr5 92717487 . T C 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3 +chr5 93040928 . CTT C 0 PASS DP=40;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,7:11,4:6,3 +chr5 93080862 . C CT 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2 +chr5 93123893 . G A 0 PASS DP=66;GPV=1;SPV=1.6554e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:9,12:13,6 +chr5 93793239 . A ATTTTTTT 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,3:4,3 +chr5 95134992 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:10,4:0,0 +chr5 95326965 . GT G 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr5 96579179 . C T 0 PASS DP=81;GPV=1;SPV=1.4707e-10;SS=2;SSC=98;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:16,26:8,12:8,14 +chr5 96648728 . G C 0 PASS DP=75;GPV=1;SPV=0.019526;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:20,7:13,2 +chr5 97614899 . CAG C 0 PASS DP=25;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,3:5,4 +chr5 98103764 . T C 0 PASS DP=98;GPV=1;SPV=2.915e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:32,31:12,13:20,18 +chr5 99470884 . A C 0 PASS DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,3:13,1 +chr5 99523793 . T C 0 PASS DP=61;GPV=1;SPV=0.020202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:19,7:13,2 +chr5 99535107 . C CTTT 0 PASS DP=37;GPV=1;SPV=0.017445;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,5:8,1 +chr5 100006299 . TA T 0 PASS DP=38;GPV=1;SPV=0.00018181;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,5:4,7 +chr5 103754429 . CTTTTTTT C 0 PASS DP=33;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:0,6:4,2 +chr5 105144833 . AT A 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,1:1,3 +chr5 105331051 . T A 0 PASS DP=70;GPV=1;SPV=1.3543e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:9,9:8,10 +chr5 105366838 . T A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr5 106254272 . C T 0 PASS DP=60;GPV=1;SPV=7.0453e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,6:11,4 +chr5 107013991 . CAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=23;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:4,5:3,2 +chr5 107097634 . AT A 0 PASS DP=48;GPV=1;SPV=0.016427;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,3:6,7 +chr5 107435315 . C CT 0 PASS DP=30;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:3,3:3,1 +chr5 107766518 . C CT 0 PASS DP=43;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,10:2,7:4,3 +chr5 110102154 . C T 0 PASS DP=71;GPV=1;SPV=0.00046953;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:20,6:11,10 +chr5 111410285 . G C 0 PASS DP=63;GPV=1;SPV=1.9448e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:10,8:7,4 +chr5 111413801 . C T 0 PASS DP=78;GPV=1;SPV=1.0268e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:11,9:9,10 +chr5 113333838 . T C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr5 113776664 . G GA 0 PASS DP=60;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,9:14,7 +chr5 115725800 . C CT 0 PASS DP=65;GPV=1;SPV=1.9869e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:15,10:6,6 +chr5 117993358 . C G 0 PASS DP=81;GPV=1;SPV=0.01943;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,4:17,8 +chr5 118087859 . C T 0 PASS DP=64;GPV=1;SPV=0.00012866;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:15,8:9,8 +chr5 118438416 . A C 0 PASS DP=34;GPV=1;SPV=0.17119;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,1:13,5 +chr5 119880334 . C CAT 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,2:8,3 +chr5 120737307 . GTTTTTTT G 0 PASS DP=33;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,6:7,5:5,1 +chr5 120829860 . CTTT C 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,3:5,1 +chr5 122329262 . C CA 0 PASS DP=52;GPV=1;SPV=0.002076;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:11,3:7,5 +chr5 123053488 . T A 0 PASS DP=53;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,2:0,0:4,2 +chr5 124559310 . C CA 0 PASS DP=43;GPV=1;SPV=0.0080824;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,10:8,3 +chr5 125130486 . T A 0 PASS DP=40;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,2:0,1:1,1 +chr5 126163846 . CAT C 0 PASS DP=24;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:2,1:7,4 +chr5 126481221 . A G 0 PASS DP=36;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:7,2:10,2 +chr5 126536120 . CAA C 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:24,2:9,2 +chr5 126688340 . G GT 0 PASS DP=34;GPV=1;SPV=0.31269;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,5:6,1 +chr5 126973879 . ATTTTT A 0 PASS DP=37;GPV=1;SPV=0.0082825;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,4:5,4 +chr5 127119095 . C CA 0 PASS DP=42;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:12,4:4,2 +chr5 131523279 . CT C 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1 +chr5 131820074 . C CT 0 PASS DP=47;GPV=1;SPV=0.025884;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:13,9:7,4 +chr5 137076608 . A T 0 PASS DP=72;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:5,3:4,1:1,2 +chr5 138756027 . CTTAT C 0 PASS DP=51;GPV=1;SPV=0.011669;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,6:11,6 +chr5 140052681 . G A 0 PASS DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:6,9:10,6 +chr5 140636480 . T A 0 PASS DP=85;GPV=1;SPV=0.00046416;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,20:10,10:11,10 +chr5 142075636 . G A 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,2:10,2 +chr5 143254319 . C CAA 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1 +chr5 144590836 . C T 0 PASS DP=89;GPV=1;SPV=6.0795e-10;SS=2;SSC=92;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:21,26:11,11:10,15 +chr5 146496869 . GT G 0 PASS DP=35;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:14,6:3,1 +chr5 146509492 . C CT 0 PASS DP=54;GPV=1;SPV=0.00011224;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:4,5:9,4 +chr5 146580713 . A T 0 PASS DP=63;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,2:17,2 +chr5 148588529 . T C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,1:5,3 +chr5 149354836 . C CTTTT 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,4:5,1 +chr5 149784560 . CTTTT C 0 PASS DP=29;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:6,4:2,2 +chr5 150463069 . CT C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr5 150493168 . A AT 0 PASS DP=28;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,2:2,2 +chr5 152277161 . C T 0 PASS DP=74;GPV=1;SPV=8.5814e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:10,7:11,11 +chr5 152847763 . C T 0 PASS DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:13,8:14,2 +chr5 153163069 . G A 0 PASS DP=73;GPV=1;SPV=8.605e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:8,8:8,9 +chr5 154003178 . T C 0 PASS DP=46;GPV=1;SPV=0.015873;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,4:5,4 +chr5 154064160 . CT C 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,6:3,1 +chr5 155443463 . C CTGTGTGTGTGTGTGTG 0 PASS DP=56;GPV=1;SPV=0.036581;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,3:12,8 +chr5 156009081 . G A 0 PASS DP=83;GPV=1;SPV=1.6252e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:10,6:17,13 +chr5 158226194 . ATATATATATATATATATTTTT A 0 PASS DP=27;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,6:3,4 +chr5 160092013 . G GATATATATATATATAT 0 PASS DP=27;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,8:3,4:1,4 +chr5 160233880 . A G 0 PASS DP=43;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,4:6,2:11,2 +chr5 162160353 . C T 0 PASS DP=85;GPV=1;SPV=3.9315e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:9,12:18,10 +chr5 163131669 . T C 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,4:4,5 +chr5 163143077 . C CTT 0 PASS DP=25;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,5:3,4:3,1 +chr5 164790169 . GTA G 0 PASS DP=56;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,13:3,7:4,6 +chr5 166418120 . T C 0 PASS DP=83;GPV=1;SPV=5.9527e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:13,10:10,12 +chr5 166892730 . C CT 0 PASS DP=23;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:3,4:1,1 +chr5 167597162 . TTTC T 0 PASS DP=48;GPV=1;SPV=0.00057702;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:8,8:8,3 +chr5 168777109 . C A 0 PASS DP=59;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,8:6,2:7,6 +chr5 170316063 . C CT 0 PASS DP=27;GPV=1;SPV=0.0055835;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,12:1,4:4,8 +chr5 170860295 . TAA T 0 PASS DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:12,2:2,3 +chr5 171415713 . C CTTTT 0 PASS DP=43;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:4,7:5,3 +chr5 172348653 . TC T 0 PASS DP=68;GPV=1;SPV=0.025658;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,6:9,5:9,1 +chr5 172978676 . A G 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:20,1:4,3 +chr5 173166560 . GATATATATAT G 0 PASS DP=45;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:7,4:1,4 +chr5 173302768 . A AGT 0 PASS DP=69;GPV=1;SPV=0.0016605;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,2:12,6 +chr5 173622113 . CT C 0 PASS DP=35;GPV=1;SPV=0.0070885;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,4:3,3 +chr5 174272340 . T A 0 PASS DP=86;GPV=1;SPV=1.8504e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:16,13:11,11 +chr5 174426387 . G GCTCGCTCACTCA 0 PASS DP=70;GPV=1;SPV=0.010954;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,12:15,9:11,3 +chr5 174837994 . A C 0 PASS DP=84;GPV=1;SPV=1.9011e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:30,28:23,13:7,15 +chr5 175313714 . CCTCT C 0 PASS DP=24;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,3:3,2 +chr5 175650718 . T C 0 PASS DP=76;GPV=1;SPV=0.074196;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:14,1:27,4 +chr5 175650720 . TC T 0 PASS DP=71;GPV=1;SPV=0.073933;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:11,1:27,4 +chr5 175958254 . G A 0 PASS DP=72;GPV=1;SPV=0.0025282;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:13,2:15,6 +chr5 176048461 . A AG 0 PASS DP=79;GPV=1;SPV=0.008914;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:22,9:14,3 +chr5 177480969 . T TA 0 PASS DP=34;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:6,3:5,7 +chr5 177672070 . A G 0 PASS DP=61;GPV=1;SPV=0.028928;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:19,6:12,1 +chr5 177749020 . T C 0 PASS DP=36;GPV=1;SPV=0.21475;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1 +chr5 177767877 . T G 0 PASS DP=37;GPV=1;SPV=0.26573;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,3:10,1 +chr5 177885544 . C T 0 PASS DP=34;GPV=1;SPV=0.011208;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,6:8,2 +chr5 177920547 . A G 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,8:4,2 +chr5 177988854 . G T 0 PASS DP=48;GPV=1;SPV=0.16401;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,3:8,1:13,2 +chr5 178025459 . G A 0 PASS DP=75;GPV=1;SPV=0.03318;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:16,5:14,7 +chr5 179004688 . C CAA 0 PASS DP=40;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:12,5:5,2 +chr5 179376012 . A C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 179479049 . CTTT C 0 PASS DP=43;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:10,3:5,5 +chr5 179642093 . G T 0 PASS DP=71;GPV=1;SPV=0.0076491;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:11,9:17,5 +chr5 179674561 . C CTT 0 PASS DP=33;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr5 180015736 . GA G 0 PASS DP=40;GPV=1;SPV=0.37843;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,4:19,3:4,1 +chr5 180174491 . C CGT 0 PASS DP=52;GPV=1;SPV=0.046386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:18,2:5,3 +chr5 180228444 . T C 0 PASS DP=25;GPV=1;SPV=0.017149;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:1,5:5,5 +chr6 1948483 . T A 0 PASS DP=67;GPV=1;SPV=7.8657e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:9,12:5,5 +chr6 4247407 . GT G 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:7,3:2,1 +chr6 4923902 . A C 0 PASS DP=49;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,2:3,1:4,1 +chr6 5493209 . CA C 0 PASS DP=44;GPV=1;SPV=0.0042621;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,7:4,4 +chr6 5503405 . CAGAGAG C 0 PASS DP=65;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:5,4:2,1:3,3 +chr6 6046596 . A AAT 0 PASS DP=30;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr6 6722660 . CA C 0 PASS DP=22;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:5,3:1,1 +chr6 7000651 . G A 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:10,8:0,1 +chr6 7117388 . GTTTTTTTTTTTTTT G 0 PASS DP=32;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,9:8,7:1,2 +chr6 7286916 . C CA 0 PASS DP=41;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:9,6:4,3 +chr6 7838974 . G C 0 PASS DP=66;GPV=1;SPV=8.258e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:4,3:14,17 +chr6 8853685 . CACACACACACACACAG C 0 PASS DP=31;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,4:3,2:4,2 +chr6 9146089 . TATAG T 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,1:11,3 +chr6 9303915 . C T 0 PASS DP=63;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,0:1,2 +chr6 10993857 . AT A 0 PASS DP=41;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,8:6,7:6,1 +chr6 10994483 . A AAGAAAAG 0 PASS DP=47;GPV=1;SPV=0.003663;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,10:0,6:1,4 +chr6 11501455 . G A 0 PASS DP=67;GPV=1;SPV=1.2608e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,20:10,10:6,10 +chr6 11855203 . T TTGTG 0 PASS DP=38;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,6:4,3:1,3 +chr6 12348035 . CTTTCTTTCTT C 0 PASS DP=44;GPV=1;SPV=0.062457;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:3,2:17,3 +chr6 13458757 . CAAAAAAA C 0 PASS DP=37;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,13:14,11:1,2 +chr6 13507347 . T A 0 PASS DP=57;GPV=1;SPV=0.038274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,4:7,3:8,1 +chr6 13793125 . CA C 0 PASS DP=41;GPV=1;SPV=0.0044521;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,10:3,9:2,1 +chr6 13926792 . T TG 0 PASS DP=62;GPV=1;SPV=0.00018595;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,16:10,9:13,7 +chr6 13926794 . T G 0 PASS DP=62;GPV=1;SPV=0.00016529;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,17:11,10:12,7 +chr6 14754524 . ATTTTTTTT A 0 PASS DP=45;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:8,7:2,2 +chr6 14998417 . ATTTTTTTTTTT A 0 PASS DP=22;GPV=1;SPV=0.001935;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,3:2,4 +chr6 15818956 . A AC 0 PASS DP=32;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,6:0,2:2,4 +chr6 16391161 . CA C 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1 +chr6 18290629 . C CTTTATTTATTTATTTA 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,1:16,4 +chr6 18749571 . G GCGCGCA 0 PASS DP=40;GPV=1;SPV=0.18176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:16,3:6,1 +chr6 18769079 . G A 0 PASS DP=26;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,3:1,2:2,1 +chr6 18939913 . T G 0 PASS DP=41;GPV=1;SPV=0.030216;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,1:5,3 +chr6 19567413 . G A 0 PASS DP=65;GPV=1;SPV=6.6453e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:6,12:8,7 +chr6 19894547 . C T 0 PASS DP=82;GPV=1;SPV=1.2173e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:13,9:14,12 +chr6 21889339 . C CT 0 PASS DP=16;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:0,5:2,1 +chr6 23667897 . C G 0 PASS DP=20;GPV=1;SPV=0.002997;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,5:0,2:0,3 +chr6 23797596 . A T 0 PASS DP=35;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,3:2,2:0,1 +chr6 23971680 . A G 0 PASS DP=71;GPV=1;SPV=1.8775e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:10,9:6,7 +chr6 25031699 . TTATATATATATA T 0 PASS DP=21;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,2:4,2 +chr6 27105858 . C T 0 PASS DP=75;GPV=1;SPV=3.3508e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:10,9:11,11 +chr6 27777967 . CT C 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,4:2,3 +chr6 29462079 . T C 0 PASS DP=75;GPV=1;SPV=6.5219e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:10,9:11,9 +chr6 31854578 . T C 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,4:9,3 +chr6 32027543 . A G 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr6 32135286 . T TAAAAA 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,3:4,1 +chr6 32238597 . T TA 0 PASS DP=47;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,3:3,6 +chr6 33154868 . CTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,2:3,2 +chr6 33481609 . T TA 0 PASS DP=48;GPV=1;SPV=0.22017;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,2:16,3 +chr6 34192501 . T A 0 PASS DP=33;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:2,5:5,3 +chr6 34416799 . C CA 0 PASS DP=38;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:7,7:5,1 +chr6 34428911 . TA T 0 PASS DP=40;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:10,1:6,4 +chr6 38328564 . CGT C 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,6:6,3 +chr6 39149355 . TCACACACA T 0 PASS DP=42;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,6:11,2 +chr6 39149365 . A T 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,6:9,2 +chr6 39152883 . A C 0 PASS DP=55;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:1,2:0,0:1,2 +chr6 40113988 . T G 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3 +chr6 40113989 . G A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3 +chr6 40491504 . G GTC 0 PASS DP=58;GPV=1;SPV=0.00058463;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,7:9,8 +chr6 40583202 . A ATATATACACTATATACATATATAG 0 PASS DP=67;GPV=1;SPV=0.0030487;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,10:12,6:5,4 +chr6 41415989 . A T 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,2:16,2 +chr6 41730964 . G A 0 PASS DP=83;GPV=1;SPV=8.0594e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:12,7:16,9 +chr6 42636180 . TTG T 0 PASS DP=47;GPV=1;SPV=0.043779;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,4:10,3 +chr6 42990699 . CT C 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,4:6,2 +chr6 43870747 . T TTTCCTTCC 0 PASS DP=30;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:3,3:4,1 +chr6 44182285 . C CCA 0 PASS DP=64;GPV=1;SPV=0.043302;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,13:22,7:5,6 +chr6 44492865 . C CTTTT 0 PASS DP=36;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:12,3:5,2 +chr6 45180518 . A C 0 PASS DP=65;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,4:15,3:7,1 +chr6 45831858 . G A 0 PASS DP=60;GPV=1;SPV=0.002743;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,27:9,11:12,16 +chr6 46263477 . G GTA 0 PASS DP=60;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:7,7:2,5:5,2 +chr6 47056841 . CA C 0 PASS DP=35;GPV=1;SPV=0.0059539;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:6,8:2,1 +chr6 47582786 . TTTTG T 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,1:10,3 +chr6 47775858 . T C 0 PASS DP=87;GPV=1;SPV=2.5416e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:32,24:19,11:13,13 +chr6 48261664 . T A 0 PASS DP=60;GPV=1;SPV=0.065169;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:15,5:18,1 +chr6 48993875 . G GATATATAT 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr6 49073002 . A ACG 0 PASS DP=49;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,6:9,3:2,3 +chr6 49349888 . CAA C 0 PASS DP=39;GPV=1;SPV=0.058443;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:17,3:1,2 +chr6 50609954 . C T 0 PASS DP=55;GPV=1;SPV=0.0010173;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,6:11,7 +chr6 51975626 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.035782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,4:5,2 +chr6 52810109 . A T 0 PASS DP=88;GPV=1;SPV=1.3687e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:9,13:15,11 +chr6 53707006 . CTGTG C 0 PASS DP=63;GPV=1;SPV=0.001804;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,15:9,6:5,9 +chr6 54414560 . GGTGTGT G 0 PASS DP=48;GPV=1;SPV=0.015549;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:8,6:10,4 +chr6 55539859 . G GAAGAAAGA 0 PASS DP=36;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:9,3:2,1 +chr6 55853195 . A G 0 PASS DP=32;GPV=1;SPV=0.031813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,1:3,3 +chr6 56053862 . A AGT 0 PASS DP=41;GPV=1;SPV=0.15275;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,5:15,3:4,2 +chr6 56260876 . G GTGTGTGTGTGTGTGTA 0 PASS DP=34;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:13,3:3,1 +chr6 59006644 . G C 0 PASS DP=118;GPV=1;SPV=0.00019944;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:26,7:29,8 +chr6 59643763 . C T 0 PASS DP=59;GPV=1;SPV=0.2008;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:10,2:26,2 +chr6 59707692 . T C 0 PASS DP=132;GPV=1;SPV=0.041603;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:11,1:53,9 +chr6 61309829 . G A 0 PASS DP=77;GPV=1;SPV=3.4806e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:6,5:12,14 +chr6 63505553 . C CA 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1 +chr6 63973297 . C T 0 PASS DP=73;GPV=1;SPV=1.8722e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:13,9:13,9 +chr6 64085342 . A G 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,1:7,3 +chr6 64094733 . T A 0 PASS DP=73;GPV=1;SPV=5.7856e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:14,10:11,12 +chr6 64643112 . T TCC 0 PASS DP=45;GPV=1;SPV=0.01327;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,10:8,5:9,5 +chr6 64758447 . A T 0 PASS DP=72;GPV=1;SPV=1.339e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,6:11,9 +chr6 65268336 . A G 0 PASS DP=78;GPV=1;SPV=8.8931e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:14,11:10,9 +chr6 66020600 . G A 0 PASS DP=84;GPV=1;SPV=1.0729e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:18,8:12,9 +chr6 67213948 . GATAT G 0 PASS DP=55;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:9,4:13,1 +chr6 67291667 . G A 0 PASS DP=79;GPV=1;SPV=5.5655e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:15,19:10,5 +chr6 67368956 . C CAAAA 0 PASS DP=45;GPV=1;SPV=0.0088608;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:11,8:1,1 +chr6 67432489 . CTATATATAGGT C 0 PASS DP=27;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2 +chr6 68139482 . A G 0 PASS DP=68;GPV=1;SPV=0.0065845;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,7:13,2 +chr6 68453959 . GATATATATATATATAT G 0 PASS DP=24;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:2,2:1,4 +chr6 68511146 . G GTATATATATATATATA 0 PASS DP=23;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:7,4:0,0 +chr6 68643438 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.32759;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:8,1:10,2 +chr6 68903992 . G GA 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:10,6:3,1 +chr6 71386851 . G GTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:3,5:6,1 +chr6 71788649 . C T 0 PASS DP=74;GPV=1;SPV=6.1955e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:15,10:13,6 +chr6 72500207 . AAG A 0 PASS DP=49;GPV=1;SPV=0.32898;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,3:23,2:4,1 +chr6 73197580 . TAC T 0 PASS DP=37;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,7:7,5:3,2 +chr6 73777119 . T TG 0 PASS DP=41;GPV=1;SPV=0.02457;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:4,8:12,4 +chr6 73839726 . G A 0 PASS DP=48;GPV=1;SPV=0.044913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3 +chr6 74207299 . C CATATATATATAT 0 PASS DP=21;GPV=1;SPV=0.016983;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:1,4:0,0 +chr6 75620082 . C CA 0 PASS DP=44;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,9:3,8:6,1 +chr6 75965626 . G T 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:2,3:15,1 +chr6 77485758 . A ATC 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3 +chr6 77603242 . T G 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,3:15,1 +chr6 78679138 . C CA 0 PASS DP=40;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:11,6:4,2 +chr6 80625694 . CA C 0 PASS DP=34;GPV=1;SPV=0.0062662;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,8:3,1 +chr6 81549622 . CAAAAAA C 0 PASS DP=43;GPV=1;SPV=0.02948;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,7:9,6:4,1 +chr6 81622692 . C A 0 PASS DP=74;GPV=1;SPV=2.3613e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:15,6:12,12 +chr6 82560513 . C A 0 PASS DP=74;GPV=1;SPV=0.023055;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:9,1:20,6 +chr6 82727946 . C CTT 0 PASS DP=27;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:4,3:5,1 +chr6 85837908 . G GCTCTCC 0 PASS DP=52;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,6:20,2:6,4 +chr6 87128528 . G A 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr6 87576511 . C CAA 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,2:9,3 +chr6 87673155 . T A 0 PASS DP=34;GPV=1;SPV=0.36477;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,4:12,1:3,3 +chr6 88817749 . AT A 0 PASS DP=27;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,4:5,2 +chr6 89226316 . G A 0 PASS DP=46;GPV=1;SPV=0.0083603;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:14,2:3,12 +chr6 90100726 . CAG C 0 PASS DP=60;GPV=1;SPV=0.039826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:16,3:16,4 +chr6 90869070 . A T 0 PASS DP=27;GPV=1;SPV=0.0022624;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:2,6:0,2:2,4 +chr6 92362251 . C T 0 PASS DP=89;GPV=1;SPV=3.2304e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:33,22:13,8:20,14 +chr6 93972375 . T A 0 PASS DP=67;GPV=1;SPV=1.8499e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:13,10:10,9 +chr6 93972376 . G T 0 PASS DP=63;GPV=1;SPV=2.4089e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:13,10:8,8 +chr6 94734298 . T TATA 0 PASS DP=29;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,3:2,3 +chr6 95206300 . T C 0 PASS DP=48;GPV=1;SPV=0.2103;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2 +chr6 95222683 . C CTTTATTTA 0 PASS DP=47;GPV=1;SPV=0.011012;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:1,4:7,3 +chr6 95486213 . CAT C 0 PASS DP=86;GPV=1;SPV=0.033212;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:19,5:18,8 +chr6 95986165 . C CA 0 PASS DP=42;GPV=1;SPV=0.00023962;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,14:8,13:1,1 +chr6 97518133 . A G 0 PASS DP=45;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,5:0,1:1,4 +chr6 97752884 . GTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=28;GPV=1;SPV=0.0042363;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:2,9:3,6 +chr6 99194841 . G A 0 PASS DP=76;GPV=1;SPV=1.5862e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:19,26:8,12:11,14 +chr6 99536268 . CT C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr6 99854166 . T TCTTTCTTTCTTG 0 PASS DP=51;GPV=1;SPV=0.18054;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,7:11,1:14,6 +chr6 100278030 . C T 0 PASS DP=52;GPV=1;SPV=6.7064e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:6,8:10,7 +chr6 101006187 . C T 0 PASS DP=69;GPV=1;SPV=7.6418e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:10,11:9,8 +chr6 101464501 . T C 0 PASS DP=26;GPV=1;SPV=0.020362;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:4,3:0,2 +chr6 101478574 . C T 0 PASS DP=69;GPV=1;SPV=3.1349e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,23:7,6:9,17 +chr6 101920016 . A T 0 PASS DP=78;GPV=1;SPV=1.1925e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:13,8:11,11 +chr6 102592586 . TAC T 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2 +chr6 103119646 . C A 0 PASS DP=77;GPV=1;SPV=1.6846e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:29,21:17,11:12,10 +chr6 104416698 . G T 0 PASS DP=47;GPV=1;SPV=9.9525e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,6:6,6 +chr6 106471817 . GAA G 0 PASS DP=34;GPV=1;SPV=0.013986;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,3:0,2:0,1 +chr6 106542608 . CATTTTATTTT C 0 PASS DP=54;GPV=1;SPV=0.012393;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:2,4:10,3 +chr6 106946765 . AAT A 0 PASS DP=57;GPV=1;SPV=0.0037028;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,1:8,4 +chr6 107464075 . T TTA 0 PASS DP=27;GPV=1;SPV=7.6853e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:2,6:0,4 +chr6 108179492 . CTG C 0 PASS DP=30;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,12:2,6:2,6 +chr6 108194201 . G C 0 PASS DP=53;GPV=1;SPV=1.1416e-12;SS=2;SSC=119;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:2,20:1,9:1,11 +chr6 110963703 . C CTT 0 PASS DP=29;GPV=1;SPV=0.00027326;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,9:3,7:0,2 +chr6 111100952 . TTCTCTCCC T 0 PASS DP=25;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:4,3:0,1 +chr6 111523087 . T C 0 PASS DP=53;GPV=1;SPV=0.01202;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,2:6,4 +chr6 111526908 . A G 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr6 111532656 . G GTTTTTTTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.015851;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1 +chr6 112273188 . G GT 0 PASS DP=22;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:2,3:1,2 +chr6 112340122 . A T 0 PASS DP=38;GPV=1;SPV=0.0098578;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,4:1,3:0,1 +chr6 112815220 . G T 0 PASS DP=42;GPV=1;SPV=1.1468e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:1,6:3,6 +chr6 113143734 . C CA 0 PASS DP=41;GPV=1;SPV=0.00012036;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:1,3:4,3 +chr6 113647950 . CTTTTTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,6:3,2 +chr6 113855010 . CTTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,5:3,1 +chr6 114744473 . A G 0 PASS DP=59;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:2,2:2,2:0,0 +chr6 114872481 . C T 0 PASS DP=46;GPV=1;SPV=0.035975;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,1:8,3 +chr6 114957420 . ATCTCTC A 0 PASS DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:1,5:3,4 +chr6 115030939 . T A 0 PASS DP=29;GPV=1;SPV=0.00074646;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,7:2,3:0,4 +chr6 118540758 . A T 0 PASS DP=70;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:6,3:3,1:3,2 +chr6 118567249 . GTATATATATATATA G 0 PASS DP=35;GPV=1;SPV=0.05;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,3:0,1:0,2 +chr6 118638207 . C CA 0 PASS DP=38;GPV=1;SPV=0.00027194;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,4:3,3 +chr6 118746433 . T G 0 PASS DP=38;GPV=1;SPV=0.00090356;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3 +chr6 122703941 . T G 0 PASS DP=37;GPV=1;SPV=0.030207;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,2:3,2 +chr6 122799961 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:1,5:3,1 +chr6 124716810 . T A 0 PASS DP=29;GPV=1;SPV=0.0014706;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,3:0,1:0,2 +chr6 125140009 . T G 0 PASS DP=39;GPV=1;SPV=0.00019367;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:1,3:5,6 +chr6 125946953 . GTTTTT G 0 PASS DP=41;GPV=1;SPV=0.0024264;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2 +chr6 127538842 . G A 0 PASS DP=37;GPV=1;SPV=0.000258;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:0,6:0,2:0,4 +chr6 127543935 . T A 0 PASS DP=24;GPV=1;SPV=0.0001754;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,7:1,5:0,2 +chr6 128658432 . T C 0 PASS DP=58;GPV=1;SPV=6.0551e-13;SS=2;SSC=122;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:3,21:2,12:1,9 +chr6 129256763 . C CAT 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1 +chr6 130154695 . GAAAAAAAA G 0 PASS DP=19;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:0,3:1,1 +chr6 131367234 . TA T 0 PASS DP=36;GPV=1;SPV=0.00027385;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,3:3,7 +chr6 131669655 . CA C 0 PASS DP=32;GPV=1;SPV=0.0019985;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,7:4,1 +chr6 131701894 . A AAAAG 0 PASS DP=106;GPV=1;SPV=0.018284;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,13:32,4:16,9 +chr6 132717180 . G A 0 PASS DP=44;GPV=1;SPV=0.026298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,2:6,4 +chr6 137107283 . TTTCCTTCC T 0 PASS DP=25;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:0,4:3,3 +chr6 137684774 . T G 0 PASS DP=41;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,2:0,1:6,1 +chr6 139152418 . A ATGTGTGTGTGTGTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:3,5:0,1 +chr6 139391578 . A AATAT 0 PASS DP=29;GPV=1;SPV=0.00055741;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:2,3:2,3 +chr6 139423756 . A ATT 0 PASS DP=30;GPV=1;SPV=0.0085588;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr6 140681966 . TAC T 0 PASS DP=20;GPV=1;SPV=0.0032151;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,5:0,2 +chr6 141236493 . TC T 0 PASS DP=55;GPV=1;SPV=3.2572e-11;SS=2;SSC=104;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:3,16:1,6:2,10 +chr6 142862557 . C T 0 PASS DP=68;GPV=1;SPV=0.033752;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,6:13,3 +chr6 144030254 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.00027871;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:2,6:2,1 +chr6 144854279 . TG T 0 PASS DP=55;GPV=1;SPV=0.012218;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,4:7,1 +chr6 145079334 . T A 0 PASS DP=60;GPV=1;SPV=0.017294;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,5:7,1 +chr6 145390563 . T TTCTCTCTCTCTC 0 PASS DP=31;GPV=1;SPV=1.6227e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,11:0,6:1,5 +chr6 147113553 . G GT 0 PASS DP=30;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,5:4,3 +chr6 148310424 . G GA 0 PASS DP=49;GPV=1;SPV=8.7675e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,12:0,8:3,4 +chr6 148368774 . A G 0 PASS DP=21;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr6 148429385 . TAAA T 0 PASS DP=29;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:4,8:0,2 +chr6 148482688 . A ATTTTTTTTTT 0 PASS DP=34;GPV=1;SPV=0.028937;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,1:5,3 +chr6 148510995 . CAA C 0 PASS DP=32;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:3,8:2,3 +chr6 148537776 . CTGTGTGTGTGTGTG C 0 PASS DP=35;GPV=1;SPV=0.0012276;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:3,6:4,3 +chr6 149182971 . C CA 0 PASS DP=62;GPV=1;SPV=1.6076e-11;SS=2;SSC=107;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:6,21:2,12:4,9 +chr6 149253940 . AAG A 0 PASS DP=43;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:5,1:5,3 +chr6 149498307 . C CA 0 PASS DP=33;GPV=1;SPV=0.013155;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:4,4:2,2 +chr6 149711255 . T A 0 PASS DP=70;GPV=1;SPV=0.00035303;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:32:1,5:0,1:1,4 +chr6 150494265 . T C 0 PASS DP=69;GPV=1;SPV=0.004329;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,2:0,1:0,1 +chr6 150547198 . T TGAAATAAAAGCAAACAGGCAGACTC 0 PASS DP=27;GPV=1;SPV=7.4322e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:1,4:2,4 +chr6 150806223 . CTT C 0 PASS DP=25;GPV=1;SPV=0.016601;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr6 151374930 . T TA 0 PASS DP=37;GPV=1;SPV=0.00041113;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,7:3,1 +chr6 153229197 . C CTG 0 PASS DP=45;GPV=1;SPV=4.1725e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,13:6,8:2,5 +chr6 154572176 . T A 0 PASS DP=53;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,1:0,1 +chr6 154955391 . C CA 0 PASS DP=27;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,3:1,1 +chr6 155112125 . C CT 0 PASS DP=30;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,4:3,3 +chr6 157010640 . T C 0 PASS DP=41;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,3:0,1:1,2 +chr6 157062708 . T A 0 PASS DP=40;GPV=1;SPV=0.040303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3 +chr6 158260824 . CT C 0 PASS DP=38;GPV=1;SPV=0.012255;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,3:2,1:0,2 +chr6 158365881 . T C 0 PASS DP=24;GPV=1;SPV=0.006993;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,4:0,0:1,4 +chr6 158438604 . A T 0 PASS DP=58;GPV=1;SPV=0.00037527;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:2,6:1,4:1,2 +chr6 158957669 . C CAA 0 PASS DP=19;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:2,4:0,1 +chr6 159010668 . C T 0 PASS DP=23;GPV=1;SPV=9.8367e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,11:1,8:0,3 +chr6 160000728 . GTT G 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,3:1,2 +chr6 160399614 . T A 0 PASS DP=66;GPV=1;SPV=2.8199e-13;SS=2;SSC=125;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:5,23:2,10:3,13 +chr6 160584170 . TTTCTTCTTCTTCTTCTTCTTC T 0 PASS DP=38;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:2,2:7,6 +chr6 161859610 . C CAAAA 0 PASS DP=31;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,5:2,1 +chr6 163603806 . CTT C 0 PASS DP=30;GPV=1;SPV=0.018062;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr6 165128078 . C T 0 PASS DP=39;GPV=1;SPV=0.0090498;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,5:3,2:0,3 +chr6 166005467 . C T 0 PASS DP=63;GPV=1;SPV=1.3223e-11;SS=2;SSC=108;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:4,16:3,7:1,9 +chr6 166449922 . C G 0 PASS DP=35;GPV=1;SPV=0.0017012;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2 +chr6 166449945 . A G 0 PASS DP=23;GPV=1;SPV=0.0032306;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:0,5:5,2 +chr6 167338868 . T C 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4 +chr6 167671652 . T C 0 PASS DP=39;GPV=1;SPV=0.008228;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,1:6,5 +chr6 168309421 . G A 0 PASS DP=47;GPV=1;SPV=0.032849;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr6 168311597 . T C 0 PASS DP=30;GPV=1;SPV=0.023923;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,3:1,1:1,2 +chr6 168714925 . G T 0 PASS DP=32;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,2:0,0:1,2 +chr6 169024831 . T TCGG 0 PASS DP=20;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,2:0,0:2,2 +chr6 169032514 . GA G 0 PASS DP=30;GPV=1;SPV=0.00084958;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:2,2:3,8 +chr6 169186616 . T TGCCATGAGCTCAATAAACCCCACTACGCCCTC 0 PASS DP=38;GPV=1;SPV=0.00048033;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:2,2:1,4 +chr6 169923874 . C T 0 PASS DP=22;GPV=1;SPV=2.8145e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,8:0,2:0,6 +chr6 170394572 . C T 0 PASS DP=48;GPV=1;SPV=0.014432;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:3,4:16,2 +chr6 170398819 . G T 0 PASS DP=255;GPV=1;SPV=0.004943;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:96,11:60,5:36,6 +chr6 170453100 . AGTGTAT A 0 PASS DP=44;GPV=1;SPV=0.018737;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:16,3:0,2 +chr6 170453117 . G GT 0 PASS DP=54;GPV=1;SPV=0.034379;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:14,2:4,4 +chr6 170743352 . T C 0 PASS DP=80;GPV=1;SPV=0.076398;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:22,4:25,2 +chr7 1258930 . A ATTTTTTTTT 0 PASS DP=25;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,6:2,3:0,3 +chr7 1504780 . C CTAATAATAATAA 0 PASS DP=61;GPV=1;SPV=0.035377;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:20,4:15,6 +chr7 2515047 . T C 0 PASS DP=50;GPV=1;SPV=0.022502;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:14,5:3,2 +chr7 2519556 . C T 0 PASS DP=77;GPV=1;SPV=3.7206e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:17,8:8,10 +chr7 3147626 . CTT C 0 PASS DP=30;GPV=1;SPV=0.0025203;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:5,17:4,14:1,3 +chr7 3485683 . G GTTTT 0 PASS DP=23;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:6,2:1,3 +chr7 3655485 . ATATATATATATATATATATG A 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr7 5097841 . C G 0 PASS DP=29;GPV=1;SPV=0.1839;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:5,1:7,4 +chr7 5364459 . GA G 0 PASS DP=44;GPV=1;SPV=0.029599;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:13,5:8,3 +chr7 5886635 . CT C 0 PASS DP=33;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:7,5:3,5 +chr7 5942560 . A G 0 PASS DP=50;GPV=1;SPV=0.0064122;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,9:8,2 +chr7 6049645 . C T 0 PASS DP=29;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,5:3,1:3,4 +chr7 6174539 . G GTT 0 PASS DP=40;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:4,3:4,5 +chr7 6372792 . C CT 0 PASS DP=37;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:9,5:4,2 +chr7 6807540 . A G 0 PASS DP=115;GPV=1;SPV=0.045587;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:24,7:25,8 +chr7 7649158 . C CAA 0 PASS DP=37;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:13,3:6,1 +chr7 7673310 . TAGCAGC T 0 PASS DP=73;GPV=1;SPV=0.012896;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,15:17,7:8,8 +chr7 8739171 . TA T 0 PASS DP=32;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:8,2:5,3 +chr7 9322189 . G A 0 PASS DP=50;GPV=1;SPV=0.00025134;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,10:9,5 +chr7 11248413 . GTGTGTGTGTGTGTGTGTGTA G 0 PASS DP=63;GPV=1;SPV=0.0052504;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,15:9,10:17,5 +chr7 12946653 . ATTTTTTTTT A 0 PASS DP=28;GPV=1;SPV=0.087294;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,5:2,2 +chr7 13213807 . C A 0 PASS DP=36;GPV=1;SPV=0.030651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:5,1:6,4 +chr7 13778320 . CAAAAAAA C 0 PASS DP=33;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:3,5:5,1 +chr7 14265318 . C CT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr7 14340159 . CTT C 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,3:0,2 +chr7 15356953 . C CA 0 PASS DP=34;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:11,11:1,1 +chr7 16342820 . C CATATATAG 0 PASS DP=19;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:4,2:1,2 +chr7 16732383 . T C 0 PASS DP=44;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:6,2:15,2 +chr7 17540920 . A ATT 0 PASS DP=37;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2 +chr7 17751092 . T G 0 PASS DP=55;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:13,9:3,4 +chr7 18257118 . A G 0 PASS DP=53;GPV=1;SPV=0.048962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,5:4,2:7,3 +chr7 18783838 . T C 0 PASS DP=68;GPV=1;SPV=1.5134e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:14,8:8,8 +chr7 18980778 . C T 0 PASS DP=37;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3 +chr7 21179338 . C G 0 PASS DP=70;GPV=1;SPV=7.6188e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,10:7,8 +chr7 22000749 . A AAAAGAAAGAAAG 0 PASS DP=33;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,4:4,1:0,3 +chr7 22615614 . A T 0 PASS DP=84;GPV=1;SPV=1.07e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:11,11:8,8 +chr7 23243947 . C CA 0 PASS DP=30;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:9,3:6,1 +chr7 23382894 . C CAA 0 PASS DP=30;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:6,4:3,1 +chr7 23937962 . G C 0 PASS DP=61;GPV=1;SPV=1.5717e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,18:4,13:9,5 +chr7 24503296 . G A 0 PASS DP=72;GPV=1;SPV=9.863e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:13,6:6,10 +chr7 24599525 . T TTTTTTTG 0 PASS DP=45;GPV=1;SPV=0.098151;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,6:11,2:11,4 +chr7 25018615 . C G 0 PASS DP=34;GPV=1;SPV=0.25735;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:8,2:11,1 +chr7 26252693 . GA G 0 PASS DP=67;GPV=1;SPV=0.11245;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:30,4:9,1 +chr7 27100382 . C CA 0 PASS DP=74;GPV=1;SPV=0.00020455;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:10,5:16,6 +chr7 27288061 . C CAA 0 PASS DP=55;GPV=1;SPV=0.0021594;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,11:2,9:6,2 +chr7 27613171 . A AT 0 PASS DP=43;GPV=1;SPV=0.014917;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,4:9,3 +chr7 28608123 . T A 0 PASS DP=35;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:2,7:5,1 +chr7 28974605 . C CT 0 PASS DP=36;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:14,4:5,3 +chr7 30393033 . C T 0 PASS DP=39;GPV=1;SPV=0.076981;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:14,3:7,4 +chr7 31124226 . T G 0 PASS DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,1:15,4 +chr7 34309486 . G GTTTT 0 PASS DP=60;GPV=1;SPV=0.013646;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,8:17,2:11,6 +chr7 34427902 . GTA G 0 PASS DP=23;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:2,3:1,3 +chr7 35115753 . A G 0 PASS DP=55;GPV=1;SPV=0.048842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,2:11,3 +chr7 35115757 . A AGAGAAAAG 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,1:11,3 +chr7 35579561 . A AT 0 PASS DP=71;GPV=1;SPV=0.0036289;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:13,2:16,6 +chr7 36650136 . C T 0 PASS DP=78;GPV=1;SPV=0.012702;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:17,5:16,1 +chr7 36757915 . A C 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:3,6:4,6 +chr7 37449431 . C CAAAAAAAAA 0 PASS DP=26;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:4,3:1,2 +chr7 37847824 . G A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr7 38855210 . A C 0 PASS DP=45;GPV=1;SPV=0.017857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,3:0,0:2,3 +chr7 38944891 . C CAAAAAAAAAAAA 0 PASS DP=28;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,4:2,3:1,1 +chr7 39057163 . C T 0 PASS DP=72;GPV=1;SPV=2.2151e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:20,24:11,15:9,9 +chr7 39820298 . CA C 0 PASS DP=44;GPV=1;SPV=0.007794;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:9,8:3,3 +chr7 39871439 . G A 0 PASS DP=69;GPV=1;SPV=2.7292e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:10,6:13,9 +chr7 39939877 . T A 0 PASS DP=50;GPV=1;SPV=0.029742;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4 +chr7 40089725 . T A 0 PASS DP=45;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:5,1:5,3 +chr7 41260472 . G GTGTGTGTGTGTGTGTGTT 0 PASS DP=64;GPV=1;SPV=0.025589;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,9:13,4:14,5 +chr7 41369105 . CTTT C 0 PASS DP=45;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,2:13,2 +chr7 42114991 . C T 0 PASS DP=82;GPV=1;SPV=1.0851e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:18,24:8,8:10,16 +chr7 42166650 . CT C 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,2:6,4 +chr7 43483547 . C CTTTTTT 0 PASS DP=27;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:10,2:4,2 +chr7 45283429 . G A 0 PASS DP=50;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,5:3,2:6,3 +chr7 45283430 . A G 0 PASS DP=55;GPV=1;SPV=0.0040786;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,6:3,4:5,2 +chr7 46926730 . C CA 0 PASS DP=26;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:5,4:0,0 +chr7 47586408 . TC T 0 PASS DP=59;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,4:10,2:9,2 +chr7 48001522 . G GT 0 PASS DP=48;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:15,2:5,2 +chr7 49059558 . CAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:3,2:6,2 +chr7 49588796 . ATATT A 0 PASS DP=30;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:8,4:1,2 +chr7 50843129 . CA C 0 PASS DP=43;GPV=1;SPV=0.0034446;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:6,5:4,1 +chr7 51566510 . T A 0 PASS DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:6,12:16,7 +chr7 52185078 . G T 0 PASS DP=80;GPV=1;SPV=1.5863e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:16,12:10,8 +chr7 52299337 . CA C 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:7,10:1,1 +chr7 52652664 . G A 0 PASS DP=66;GPV=1;SPV=1.2103e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,9:9,6 +chr7 53369483 . T C 0 PASS DP=49;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:0,1:1,1 +chr7 54761973 . A C 0 PASS DP=44;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,2:5,1:0,1 +chr7 56813424 . C T 0 PASS DP=38;GPV=1;SPV=0.031941;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:2,3:10,3 +chr7 56815916 . A G 0 PASS DP=80;GPV=1;SPV=0.025226;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:28,6:9,3 +chr7 56816060 . T A 0 PASS DP=114;GPV=1;SPV=0.030972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:49,14:19,3:30,11 +chr7 56823993 . C G 0 PASS DP=43;GPV=1;SPV=0.12337;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2 +chr7 56826427 . C G 0 PASS DP=180;GPV=1;SPV=0.020375;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:97,14:20,2:77,12 +chr7 56881387 . T C 0 PASS DP=87;GPV=1;SPV=0.018549;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:14,4:26,2 +chr7 57078312 . A C 0 PASS DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:0,1:11,4 +chr7 57690906 . G GCTTT 0 PASS DP=74;GPV=1;SPV=0.017404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,5:11,3 +chr7 58057572 . G A 0 PASS DP=78;GPV=1;SPV=1.4146e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:11,9:12,8 +chr7 58093136 . A G 0 PASS DP=195;GPV=1;SPV=0.04915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:102,19:45,11:57,8 +chr7 59144468 . G C 0 PASS DP=115;GPV=1;SPV=0.034705;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:55,14:15,4:40,10 +chr7 60997686 . G T 0 PASS DP=202;GPV=1;SPV=0.0472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:95,22:57,15:38,7 +chr7 61383935 . G A 0 PASS DP=74;GPV=1;SPV=0.11838;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:19,1:25,4 +chr7 61420012 . G T 0 PASS DP=112;GPV=1;SPV=0.031766;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:62,7:32,6:30,1 +chr7 61450357 . G A 0 PASS DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:2,0:31,4 +chr7 61458212 . A G 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr7 61499553 . T A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr7 61519323 . T C 0 PASS DP=74;GPV=1;SPV=0.038105;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:9,2:29,4 +chr7 62208143 . G T 0 PASS DP=81;GPV=1;SPV=0.05493;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,3:14,1 +chr7 62247650 . C A 0 PASS DP=85;GPV=1;SPV=2.4132e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:24,26:10,13:14,13 +chr7 63108831 . A AAAT 0 PASS DP=46;GPV=1;SPV=0.00043157;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,12:5,7:0,5 +chr7 63125260 . G GTTT 0 PASS DP=51;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:2,5:3,5 +chr7 63266483 . C CAA 0 PASS DP=59;GPV=1;SPV=0.042019;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:18,5:6,5 +chr7 63420340 . C CAA 0 PASS DP=26;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:8,1:3,3 +chr7 63493980 . C G 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr7 63499197 . CA C 0 PASS DP=46;GPV=1;SPV=0.00024591;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:13,6:0,5 +chr7 63538726 . T C 0 PASS DP=45;GPV=1;SPV=0.046254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,1:12,5 +chr7 63635885 . A G 0 PASS DP=53;GPV=1;SPV=0.025864;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,3:11,3 +chr7 63764777 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr7 64083704 . G A 0 PASS DP=68;GPV=1;SPV=0.0005577;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,5:14,6 +chr7 64238898 . G A 0 PASS DP=79;GPV=1;SPV=2.8395e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:10,15:14,9 +chr7 64955977 . CTT C 0 PASS DP=34;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:7,5:4,1 +chr7 65123739 . A G 0 PASS DP=67;GPV=1;SPV=0.088082;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:19,1:18,4 +chr7 65536082 . C T 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,1:8,4 +chr7 65553140 . T C 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:20,4:5,1 +chr7 66109180 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,2:3,3 +chr7 66223987 . T C 0 PASS DP=83;GPV=1;SPV=2.3652e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,8:7,10 +chr7 66296676 . G GTTTT 0 PASS DP=26;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:5,4:0,1 +chr7 66687113 . CT C 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr7 66874154 . T TA 0 PASS DP=35;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr7 66983916 . A ATT 0 PASS DP=44;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,6:10,4:5,2 +chr7 67853945 . C CAAA 0 PASS DP=45;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,8:4,7:1,1 +chr7 67938498 . G C 0 PASS DP=68;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:9,4:3,1:6,3 +chr7 68959639 . GAAAGAAAGAAAGAAAGAAAGAA G 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,3:2,5 +chr7 69434282 . T C 0 PASS DP=80;GPV=1;SPV=7.0303e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:26,27:13,13:13,14 +chr7 70990521 . TTC T 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,1:15,3 +chr7 70990543 . C T 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,1:9,5 +chr7 71451878 . C T 0 PASS DP=74;GPV=1;SPV=1.9774e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,8:11,9 +chr7 72046709 . TA T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2 +chr7 73040521 . ATT A 0 PASS DP=31;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:2,3:5,6 +chr7 73369923 . C CT 0 PASS DP=36;GPV=1;SPV=0.048713;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:6,6:7,4 +chr7 73588509 . T TA 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr7 73609236 . C CT 0 PASS DP=40;GPV=1;SPV=0.057585;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,7:9,6:9,1 +chr7 73857461 . C T 0 PASS DP=43;GPV=1;SPV=0.028792;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:3,1:10,5 +chr7 74311933 . G A 0 PASS DP=52;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,4:3,2:6,2 +chr7 74792229 . G A 0 PASS DP=83;GPV=1;SPV=0.0039384;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:17,10:17,6 +chr7 74960681 . A AT 0 PASS DP=45;GPV=1;SPV=0.12042;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,7:13,4:3,3 +chr7 75616584 . G GGGAGGAGGA 0 PASS DP=78;GPV=1;SPV=0.039954;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:14,6:16,3 +chr7 75798478 . G A 0 PASS DP=89;GPV=1;SPV=3.1775e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:14,12:18,8 +chr7 76005852 . GGAGGAGA G 0 PASS DP=49;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,4:12,2:9,2 +chr7 76445508 . C CA 0 PASS DP=41;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:14,3:7,1 +chr7 76493649 . A G 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:16,4:16,1 +chr7 76976851 . G A 0 PASS DP=74;GPV=1;SPV=0.026132;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:15,3:17,5 +chr7 76997644 . A ATG 0 PASS DP=38;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:21,2:2,3 +chr7 77448829 . T TC 0 PASS DP=36;GPV=1;SPV=0.0788;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,4:7,3 +chr7 78355331 . C A 0 PASS DP=81;GPV=1;SPV=0.00069954;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:22,6:14,7 +chr7 79157945 . T A 0 PASS DP=43;GPV=1;SPV=0.2488;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,4:3,1:9,3 +chr7 79535993 . T G 0 PASS DP=44;GPV=1;SPV=0.022593;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:13,3:3,5 +chr7 80667754 . T TTTTTTTTG 0 PASS DP=39;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:8,3:8,3 +chr7 80683350 . A ATATGTG 0 PASS DP=64;GPV=1;SPV=0.14744;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,4:18,1:17,3 +chr7 80683365 . T C 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,2:14,2 +chr7 80683370 . A G 0 PASS DP=53;GPV=1;SPV=0.17881;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,1:13,3 +chr7 81785356 . C T 0 PASS DP=47;GPV=1;SPV=0.044239;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,5:10,1 +chr7 82710682 . C T 0 PASS DP=83;GPV=1;SPV=5.3499e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:15,8:4,13 +chr7 83533600 . T A 0 PASS DP=70;GPV=1;SPV=0.029609;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,10:8,5:9,5 +chr7 83533601 . G T 0 PASS DP=71;GPV=1;SPV=0.013002;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,11:7,5:9,6 +chr7 84987123 . CA C 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,2:7,4 +chr7 85333008 . G T 0 PASS DP=74;GPV=1;SPV=0.051194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr7 85445397 . A AT 0 PASS DP=28;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:4,4:5,1 +chr7 85460245 . T C 0 PASS DP=27;GPV=1;SPV=0.00094923;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:2,2:4,8 +chr7 86627732 . C CT 0 PASS DP=24;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,6:2,3 +chr7 87552711 . G GA 0 PASS DP=35;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:1,8:3,1 +chr7 88045888 . TTG T 0 PASS DP=34;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:3,2:3,6 +chr7 92998049 . T TTTCC 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:1,3:13,2 +chr7 93023328 . G A 0 PASS DP=73;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:20,1:17,6 +chr7 94482669 . C CT 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1 +chr7 94541537 . GTTTTT G 0 PASS DP=30;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,3:3,3 +chr7 96991900 . T TA 0 PASS DP=34;GPV=1;SPV=0.12406;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,10:3,5:5,5 +chr7 97398988 . C A 0 PASS DP=83;GPV=1;SPV=3.8752e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:10,11:15,9 +chr7 97973032 . T TAG 0 PASS DP=42;GPV=1;SPV=0.003663;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,4:1,2:0,2 +chr7 98083223 . T C 0 PASS DP=62;GPV=1;SPV=0.043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:20,2:9,3 +chr7 98573677 . G A 0 PASS DP=26;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:7,2:0,0 +chr7 98842400 . TATACAC T 0 PASS DP=72;GPV=1;SPV=0.23571;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,4:14,1:18,3 +chr7 99146737 . AAAAAAAAAAAAC A 0 PASS DP=36;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,4:7,2 +chr7 99181023 . G GTGTCTC 0 PASS DP=23;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,7:0,5:2,2 +chr7 99187790 . CTT C 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,3:9,1 +chr7 99416717 . C CT 0 PASS DP=34;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:8,5:5,1 +chr7 100300585 . G T 0 PASS DP=82;GPV=1;SPV=0.012803;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:16,3:10,3 +chr7 100505916 . C CA 0 PASS DP=38;GPV=1;SPV=0.00074257;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,8:3,1 +chr7 100731172 . A ATTTCT 0 PASS DP=53;GPV=1;SPV=0.17496;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,4:11,1:14,3 +chr7 100975659 . G GGAGCTTAGGGCTGGAGGGGCACAGAGA 0 PASS DP=104;GPV=1;SPV=0.020548;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:20,3:33,13 +chr7 100977050 . CAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.00086221;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:1,7:3,1 +chr7 101129670 . G C 0 PASS DP=30;GPV=1;SPV=0.34557;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:12,3:2,1 +chr7 101530566 . T TAAAA 0 PASS DP=31;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2 +chr7 102041666 . A AT 0 PASS DP=34;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:8,8:3,3 +chr7 102502679 . C G 0 PASS DP=46;GPV=1;SPV=0.22036;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,3:10,1 +chr7 102525408 . G GACCT 0 PASS DP=24;GPV=1;SPV=0.0040831;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:0,1:6,7 +chr7 102545789 . T A 0 PASS DP=34;GPV=1;SPV=0.0070176;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,1:6,5 +chr7 102566497 . C A 0 PASS DP=141;GPV=1;SPV=0.012066;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:47,15:19,6:28,9 +chr7 102572315 . G A 0 PASS DP=226;GPV=1;SPV=0.0084663;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:88,23:54,13:34,10 +chr7 102737971 . A G 0 PASS DP=38;GPV=1;SPV=0.014866;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,1:8,5 +chr7 102775654 . G C 0 PASS DP=70;GPV=1;SPV=0.02254;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,1:11,6 +chr7 102778232 . C CA 0 PASS DP=76;GPV=1;SPV=0.029475;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,7:11,1 +chr7 104835764 . A T 0 PASS DP=72;GPV=1;SPV=0.04188;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:4,3:3,2:1,1 +chr7 105170953 . A AAG 0 PASS DP=23;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:1,3:1,1 +chr7 105258420 . A C 0 PASS DP=48;GPV=1;SPV=0.065359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,2:1,1:2,1 +chr7 105961488 . C CA 0 PASS DP=25;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,7:2,6:2,1 +chr7 106947079 . A T 0 PASS DP=38;GPV=1;SPV=0.021122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,3:6,4 +chr7 106974638 . A ATTTTT 0 PASS DP=20;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:0,1:3,3 +chr7 109507335 . A T 0 PASS DP=53;GPV=1;SPV=1.2938e-11;SS=2;SSC=108;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:3,19:1,5:2,14 +chr7 109848658 . G C 0 PASS DP=56;GPV=1;SPV=0.037662;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:2,3:2,1:0,2 +chr7 110136642 . T A 0 PASS DP=29;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:1,3:1,3:0,0 +chr7 110669024 . AGTATGTGTGTGTGTGTGT A 0 PASS DP=27;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,5:4,2 +chr7 110873429 . C CAAA 0 PASS DP=27;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:6,4:0,0 +chr7 111281166 . GAA G 0 PASS DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2 +chr7 111702887 . A ATT 0 PASS DP=23;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:4,5:0,4 +chr7 113294142 . C CA 0 PASS DP=41;GPV=1;SPV=0.0010878;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:0,4:8,2 +chr7 113615090 . T A 0 PASS DP=50;GPV=1;SPV=0.039216;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,2:1,1:1,1 +chr7 113712765 . CTA C 0 PASS DP=59;GPV=1;SPV=0.018073;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4 +chr7 114929084 . G GATCTATCTATCTATCTATCTATCTATCT 0 PASS DP=32;GPV=1;SPV=0.031805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,3:2,2 +chr7 115934090 . A ATGTGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:2,3:0,2 +chr7 117883407 . GAA G 0 PASS DP=18;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:2,4:0,2 +chr7 119513863 . A G 0 PASS DP=42;GPV=1;SPV=0.030854;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,3:5,2 +chr7 119604986 . G A 0 PASS DP=65;GPV=1;SPV=5.0269e-15;SS=2;SSC=142;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:3,25:2,15:1,10 +chr7 121413715 . AT A 0 PASS DP=38;GPV=1;SPV=0.015738;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,3:0,2:1,1 +chr7 121635818 . AT A 0 PASS DP=61;GPV=1;SPV=3.6852e-10;SS=2;SSC=94;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:3,19:1,14:2,5 +chr7 121824269 . CAAAAA C 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr7 122023777 . A AT 0 PASS DP=40;GPV=1;SPV=0.010953;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr7 122023787 . T A 0 PASS DP=41;GPV=1;SPV=0.013479;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr7 122064553 . T TTTTG 0 PASS DP=24;GPV=1;SPV=0.000258;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,6:0,1:0,5 +chr7 123108357 . G A 0 PASS DP=52;GPV=1;SPV=4.9735e-11;SS=2;SSC=103;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:4,23:2,14:2,9 +chr7 123623931 . A G 0 PASS DP=23;GPV=1;SPV=0.027634;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:1,2:1,2 +chr7 123648340 . G C 0 PASS DP=68;GPV=1;SPV=0.015866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:17,3:15,4 +chr7 124298019 . C CA 0 PASS DP=58;GPV=1;SPV=0.0002442;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,4:1,3:0,1 +chr7 124454122 . T A 0 PASS DP=43;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,2:0,1:0,1 +chr7 124537302 . C A 0 PASS DP=51;GPV=1;SPV=0.0030303;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:0,7:0,4:0,3 +chr7 125742595 . G A 0 PASS DP=62;GPV=1;SPV=4.9042e-14;SS=2;SSC=133;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:2,19:1,8:1,11 +chr7 125758857 . C CA 0 PASS DP=23;GPV=1;SPV=9.3817e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:1,4:0,2 +chr7 126456519 . T TA 0 PASS DP=31;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:2,6:1,1 +chr7 126869933 . T TA 0 PASS DP=26;GPV=1;SPV=0.0011576;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:2,7:1,1 +chr7 126995904 . C G 0 PASS DP=61;GPV=1;SPV=1.4479e-13;SS=2;SSC=128;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:2,18:1,13:1,5 +chr7 128258439 . C CAAAAAAA 0 PASS DP=23;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0 +chr7 130581224 . A G 0 PASS DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,1:3,2 +chr7 132493755 . A G 0 PASS DP=47;GPV=1;SPV=0.0022942;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,5:3,3:3,2 +chr7 132621264 . T G 0 PASS DP=32;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:2,1:2,1 +chr7 133898745 . CAAA C 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,5:4,1 +chr7 133899745 . CTT C 0 PASS DP=28;GPV=1;SPV=0.0024526;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chr7 135236276 . G A 0 PASS DP=56;GPV=1;SPV=0.016295;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr7 135320002 . C CAA 0 PASS DP=32;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,4:2,1 +chr7 135526213 . C CA 0 PASS DP=38;GPV=1;SPV=0.00052709;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,10:1,5:4,5 +chr7 136094834 . G A 0 PASS DP=43;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:13,4:1,0 +chr7 136275026 . T C 0 PASS DP=18;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:0,0:2,2 +chr7 137811390 . A T 0 PASS DP=29;GPV=1;SPV=0.0046977;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:6,2:0,6 +chr7 137905393 . A T 0 PASS DP=41;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:1,2:1,1:0,1 +chr7 137946786 . C A 0 PASS DP=23;GPV=1;SPV=0.00027737;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,3:1,3 +chr7 138309420 . T C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,2:9,2 +chr7 138820771 . AT A 0 PASS DP=29;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,3:5,4 +chr7 138846533 . CA C 0 PASS DP=25;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,3:2,2 +chr7 138903792 . AGTGTGTGTGTGTGT A 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4 +chr7 139498140 . T A 0 PASS DP=28;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,2:0,2:0,0 +chr7 140647891 . AT A 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,4:4,2 +chr7 140948253 . A T 0 PASS DP=39;GPV=1;SPV=0.0054137;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,5:0,2:1,3 +chr7 141343525 . C CT 0 PASS DP=21;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,2:2,6 +chr7 142447384 . C CAAAA 0 PASS DP=29;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:7,4:0,1 +chr7 143750910 . T C 0 PASS DP=29;GPV=1;SPV=0.0036482;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,3:3,6 +chr7 144153330 . TA T 0 PASS DP=36;GPV=1;SPV=0.036707;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:5,1:2,3 +chr7 144156150 . AAGAAAGAAAGAAAG A 0 PASS DP=28;GPV=1;SPV=0.0032938;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,2:0,2 +chr7 144156170 . AAAAAG A 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chr7 144180904 . A G 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,4:2,3 +chr7 144227383 . T C 0 PASS DP=47;GPV=1;SPV=0.0050687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:13,5:6,4 +chr7 144327328 . T A 0 PASS DP=58;GPV=1;SPV=0.096448;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,2:13,2 +chr7 144559994 . G GGTGTGTGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.009705;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:2,7:7,1 +chr7 147081583 . T TTGTG 0 PASS DP=25;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,3:3,2 +chr7 147193952 . G T 0 PASS DP=47;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,4:3,1:2,3 +chr7 147949440 . G GTATATATATATATATATA 0 PASS DP=28;GPV=1;SPV=0.029654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:2,3:3,1 +chr7 148259179 . TA T 0 PASS DP=22;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1 +chr7 148429736 . CA C 0 PASS DP=29;GPV=1;SPV=0.04741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,7:2,1 +chr7 148942840 . C CTT 0 PASS DP=25;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:3,7:1,1 +chr7 149526935 . C G 0 PASS DP=57;GPV=1;SPV=0.001677;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,5:0,1:1,4 +chr7 150001441 . A G 0 PASS DP=71;GPV=1;SPV=0.0076579;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,3:5,6 +chr7 150359978 . A AC 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:7,4:0,2 +chr7 150496012 . AATATAAATATAATTTATTTATATTATAAATAT A 0 PASS DP=30;GPV=1;SPV=0.0070965;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,5:6,3 +chr7 151703845 . A AACAC 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr7 152245691 . G T 0 PASS DP=80;GPV=1;SPV=0.047874;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:13,5:15,3 +chr7 152247622 . AT A 0 PASS DP=150;GPV=1;SPV=0.0021227;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:54,22:35,16:19,6 +chr7 152279938 . G A 0 PASS DP=90;GPV=1;SPV=0.035613;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:15,5:18,6 +chr7 152403904 . TGGAGACTCAGAAGGTTGGGAGGCTGGGA T 0 PASS DP=244;GPV=1;SPV=0.010049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:117,32:62,15:55,17 +chr7 152789549 . ATTT A 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,3:8,5 +chr7 153701292 . GACGA G 0 PASS DP=54;GPV=1;SPV=0.013973;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,6:8,3 +chr7 153857322 . T TTCTCTCTCTCTCTCTCTC 0 PASS DP=30;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:2,3:4,1 +chr7 153988960 . G T 0 PASS DP=68;GPV=1;SPV=0.036156;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,7:11,2 +chr7 154301810 . TTTTG T 0 PASS DP=30;GPV=1;SPV=0.00024198;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:2,2:2,9 +chr7 154778820 . A AACACC 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr7 155482634 . T TTCAGAACACGCTCAGAACATGC 0 PASS DP=32;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,3:2,2 +chr7 155724990 . TTG T 0 PASS DP=36;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,15:3,9:6,6 +chr7 156049334 . A AAAG 0 PASS DP=26;GPV=1;SPV=0.001677;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,5:0,4:1,1 +chr7 156594952 . G A 0 PASS DP=69;GPV=1;SPV=2.735e-11;SS=2;SSC=105;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:3,9:2,6 +chr7 158087988 . A T 0 PASS DP=27;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr7 158406094 . A C 0 PASS DP=17;GPV=1;SPV=0.013369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:2,1:0,5 +chr7 158496193 . T C 0 PASS DP=17;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:1,1:0,2 +chr7 158496194 . G C 0 PASS DP=23;GPV=1;SPV=0.040959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:1,1:0,2 +chr8 299656 . C G 0 PASS DP=117;GPV=1;SPV=0.039905;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:26,2:23,8 +chr8 358395 . ATTTTTTTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:10,2:1,2 +chr8 798487 . C T 0 PASS DP=57;GPV=1;SPV=0.085035;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:17,6:17,1 +chr8 811362 . A T 0 PASS DP=67;GPV=1;SPV=0.096304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,1:21,3 +chr8 1040226 . G A 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:5,8:2,3 +chr8 1874778 . G C 0 PASS DP=64;GPV=1;SPV=0.043517;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:7,1:26,5 +chr8 2229155 . C T 0 PASS DP=89;GPV=1;SPV=5.9868e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,9:11,8 +chr8 2444748 . G A 0 PASS DP=83;GPV=1;SPV=0.047227;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:14,8:17,3 +chr8 2472888 . C T 0 PASS DP=108;GPV=1;SPV=0.015361;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:19,3:24,2 +chr8 3021702 . C CATCCAT 0 PASS DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:6,3:14,6 +chr8 4524252 . C CA 0 PASS DP=75;GPV=1;SPV=6.4703e-09;SS=2;SSC=81;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:9,16:6,3 +chr8 5069234 . T A 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,4:13,1 +chr8 5464267 . G A 0 PASS DP=84;GPV=1;SPV=5.0234e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:12,14:12,10 +chr8 5560584 . TAA T 0 PASS DP=29;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3 +chr8 5715391 . G A 0 PASS DP=78;GPV=1;SPV=0.00010362;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:16,7:16,10 +chr8 5971516 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.061797;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,3:11,3 +chr8 6486262 . ATC A 0 PASS DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:3,4:4,6 +chr8 6527899 . A ATTTTTTTTTTT 0 PASS DP=56;GPV=1;SPV=0.049992;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,3:16,3 +chr8 6567257 . C T 0 PASS DP=35;GPV=1;SPV=0.28552;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,2:13,2 +chr8 6576046 . CT C 0 PASS DP=42;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,7:7,2 +chr8 7158841 . G A 0 PASS DP=186;GPV=1;SPV=0.0056646;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:84,28:44,12:40,16 +chr8 7394778 . T G 0 PASS DP=142;GPV=1;SPV=0.031998;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:68,13:39,8:29,5 +chr8 7412099 . A T 0 PASS DP=74;GPV=1;SPV=0.003625;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:8,5:22,7 +chr8 7413451 . T C 0 PASS DP=126;GPV=1;SPV=0.04944;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:26,6:26,7 +chr8 7443791 . A G 0 PASS DP=51;GPV=1;SPV=0.021326;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,1:11,6 +chr8 7482816 . G A 0 PASS DP=72;GPV=1;SPV=0.077619;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:21,1:18,4 +chr8 7728128 . T C 0 PASS DP=81;GPV=1;SPV=0.032338;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:8,1:25,8 +chr8 7788059 . A G 0 PASS DP=33;GPV=1;SPV=0.0012781;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:7,5:0,8 +chr8 7862559 . A T 0 PASS DP=56;GPV=1;SPV=0.00063544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:11,5:10,7 +chr8 7870447 . G A 0 PASS DP=81;GPV=1;SPV=0.022141;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:30,7:11,5 +chr8 7885678 . G A 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,3:11,1 +chr8 7933590 . A G 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:12,4:1,1 +chr8 8025448 . A G 0 PASS DP=303;GPV=1;SPV=0.036171;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:149,22:92,12:57,10 +chr8 8058875 . T C 0 PASS DP=53;GPV=1;SPV=0.034141;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:21,3:7,5 +chr8 8073671 . C A 0 PASS DP=59;GPV=1;SPV=0.017233;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:18,6:7,4 +chr8 8188444 . G T 0 PASS DP=153;GPV=1;SPV=0.047567;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:65,15:22,6:43,9 +chr8 9158542 . C T 0 PASS DP=82;GPV=1;SPV=1.0798e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:17,11:12,6 +chr8 9857271 . G A 0 PASS DP=78;GPV=1;SPV=1.2098e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:17,26:10,20:7,6 +chr8 9871654 . G A 0 PASS DP=24;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1 +chr8 10129761 . G A 0 PASS DP=74;GPV=1;SPV=1.7807e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,7:9,8 +chr8 12156549 . C T 0 PASS DP=56;GPV=1;SPV=0.03609;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:11,4:14,5 +chr8 12351193 . G A 0 PASS DP=42;GPV=1;SPV=0.0063215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:15,5:0,2 +chr8 12408339 . C T 0 PASS DP=92;GPV=1;SPV=0.021611;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:26,5:17,8 +chr8 12444059 . A G 0 PASS DP=58;GPV=1;SPV=0.002684;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:3,4:15,9 +chr8 12457388 . C T 0 PASS DP=59;GPV=1;SPV=0.02455;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,4:9,3 +chr8 12477051 . G A 0 PASS DP=216;GPV=1;SPV=0.038811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:108,23:43,11:65,12 +chr8 12481078 . A G 0 PASS DP=36;GPV=1;SPV=0.030499;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,5:6,1 +chr8 12488765 . C T 0 PASS DP=91;GPV=1;SPV=0.0057362;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:2,1:37,14 +chr8 12523396 . T A 0 PASS DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,3:15,6 +chr8 12553640 . G A 0 PASS DP=231;GPV=1;SPV=0.019575;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:111,23:51,11:60,12 +chr8 12554999 . G C 0 PASS DP=246;GPV=1;SPV=0.011245;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:112,27:54,12:58,15 +chr8 12559174 . T G 0 PASS DP=305;GPV=1;SPV=0.041368;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:156,21:90,14:66,7 +chr8 12566578 . A T 0 PASS DP=266;GPV=1;SPV=0.034655;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:129,25:67,14:62,11 +chr8 12575468 . A T 0 PASS DP=223;GPV=1;SPV=0.027986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:111,18:47,11:64,7 +chr8 12575947 . C G 0 PASS DP=252;GPV=1;SPV=0.014876;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:122,30:62,15:60,15 +chr8 12578071 . G A 0 PASS DP=291;GPV=1;SPV=0.0094149;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:118,30:60,11:58,19 +chr8 12584053 . G A 0 PASS DP=269;GPV=1;SPV=0.0010457;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:114,33:58,16:56,17 +chr8 12591386 . C T 0 PASS DP=215;GPV=1;SPV=0.020299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:104,21:48,10:56,11 +chr8 12592545 . C G 0 PASS DP=146;GPV=1;SPV=0.00095766;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:69,11:37,5:32,6 +chr8 12597860 . C T 0 PASS DP=222;GPV=1;SPV=0.029283;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:95,23:50,11:45,12 +chr8 12996992 . TTTA T 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:3,2:14,2 +chr8 14207151 . A T 0 PASS DP=37;GPV=1;SPV=0.018501;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,2:5,3 +chr8 14479740 . TTTTTTTTTTTTTTTTTTTTTTA T 0 PASS DP=27;GPV=1;SPV=0.022269;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,12:1,9:0,3 +chr8 14920883 . G A 0 PASS DP=73;GPV=1;SPV=1.99e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,22:8,12:9,10 +chr8 15066315 . CA C 0 PASS DP=42;GPV=1;SPV=0.022413;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,5:3,3 +chr8 15578761 . T C 0 PASS DP=91;GPV=1;SPV=0.025071;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:23,3:25,4 +chr8 16226991 . C A 0 PASS DP=74;GPV=1;SPV=6.6057e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:14,8:10,9 +chr8 16460723 . C CAGATAGAT 0 PASS DP=57;GPV=1;SPV=0.007899;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:15,7:13,5 +chr8 17199545 . CT C 0 PASS DP=40;GPV=1;SPV=0.040021;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,1:9,4 +chr8 17547785 . A AGTGTGTGTGTGT 0 PASS DP=47;GPV=1;SPV=0.0019317;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,11:5,7:1,4 +chr8 17657799 . C CA 0 PASS DP=49;GPV=1;SPV=0.0037289;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:7,10:5,2 +chr8 18727584 . G A 0 PASS DP=55;GPV=1;SPV=0.06964;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr8 19906397 . CT C 0 PASS DP=32;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr8 20060686 . CA C 0 PASS DP=35;GPV=1;SPV=0.015907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1 +chr8 21024149 . CTTTTTTTTTTTTTTTTT C 0 PASS DP=24;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,6:2,5 +chr8 23526447 . G GGTGTGTGTGTGTGTGT 0 PASS DP=57;GPV=1;SPV=0.012732;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:7,2:11,5 +chr8 24336580 . C CA 0 PASS DP=39;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:8,4:6,1 +chr8 24453702 . G A 0 PASS DP=89;GPV=1;SPV=9.2103e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:18,12:9,11 +chr8 26211161 . C CTT 0 PASS DP=23;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:4,5:0,1 +chr8 26397641 . G A 0 PASS DP=42;GPV=1;SPV=0.015459;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,1:7,7 +chr8 26459352 . T C 0 PASS DP=23;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:1,2:0,0 +chr8 26867416 . TTGTG T 0 PASS DP=71;GPV=1;SPV=0.060625;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,3:14,1 +chr8 28198597 . C T 0 PASS DP=42;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:2,2:4,4 +chr8 28452937 . T A 0 PASS DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,2:12,2 +chr8 28452938 . C T 0 PASS DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,2:12,3 +chr8 28684958 . G T 0 PASS DP=64;GPV=1;SPV=0.013798;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:18,4:9,6 +chr8 28905295 . T C 0 PASS DP=82;GPV=1;SPV=5.3228e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,22:14,12:16,10 +chr8 31689385 . G A 0 PASS DP=62;GPV=1;SPV=8.063e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:7,8:11,8 +chr8 31702451 . A AT 0 PASS DP=55;GPV=1;SPV=0.0021265;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,14:2,7:1,7 +chr8 31987320 . A ATG 0 PASS DP=43;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:7,3:5,6 +chr8 32364957 . CT C 0 PASS DP=28;GPV=1;SPV=0.00022435;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:1,3:2,5 +chr8 32685308 . G A 0 PASS DP=71;GPV=1;SPV=5.8399e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:18,27:10,17:8,10 +chr8 33509979 . CA C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,7:2,1 +chr8 33519252 . CCTTTCTTT C 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,3:12,2 +chr8 33999608 . C T 0 PASS DP=74;GPV=1;SPV=8.3252e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:11,7:11,7 +chr8 34006849 . G C 0 PASS DP=85;GPV=1;SPV=1.3912e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:15,7:13,7 +chr8 34529226 . A T 0 PASS DP=37;GPV=1;SPV=0.0023627;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2 +chr8 34683207 . G GT 0 PASS DP=57;GPV=1;SPV=0.0010489;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,6:8,5 +chr8 35005401 . T A 0 PASS DP=70;GPV=1;SPV=4.5956e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:11,12:12,11 +chr8 35021243 . C T 0 PASS DP=78;GPV=1;SPV=6.234e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,7:11,5 +chr8 36201245 . G A 0 PASS DP=83;GPV=1;SPV=1.2833e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:12,8:16,14 +chr8 36846788 . G GAA 0 PASS DP=36;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:6,7:1,1 +chr8 37542086 . C T 0 PASS DP=39;GPV=1;SPV=0.23498;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,5:1,2:11,3 +chr8 38581989 . T G 0 PASS DP=60;GPV=1;SPV=0.026864;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:11,3:17,3 +chr8 39490853 . A T 0 PASS DP=45;GPV=1;SPV=0.0050177;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,6:7,2 +chr8 43106509 . C CT 0 PASS DP=46;GPV=1;SPV=0.037131;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:13,6:4,1 +chr8 45507566 . C A 0 PASS DP=46;GPV=1;SPV=0.025658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:12,4:6,2 +chr8 45928734 . G C 0 PASS DP=396;GPV=1;SPV=0.0078175;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:195,31:78,12:117,19 +chr8 46302903 . C T 0 PASS DP=85;GPV=1;SPV=1.2903e-09;SS=2;SSC=88;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:19,23:10,9:9,14 +chr8 47647651 . AGAGG A 0 PASS DP=57;GPV=1;SPV=0.020348;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,3:13,4 +chr8 48475489 . C T 0 PASS DP=71;GPV=1;SPV=1.5771e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:13,7:9,7 +chr8 49316765 . T A 0 PASS DP=57;GPV=1;SPV=0.23136;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,3:14,1 +chr8 49995314 . G T 0 PASS DP=67;GPV=1;SPV=9.6906e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,8:10,10 +chr8 52849803 . G A 0 PASS DP=71;GPV=1;SPV=1.5103e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,28:11,17:8,11 +chr8 54483873 . C T 0 PASS DP=31;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,9:1,3:4,6 +chr8 54882775 . C CTGTGTGTGTGTGTG 0 PASS DP=62;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,8:13,4 +chr8 55041021 . C CT 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr8 60406577 . CT C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr8 60462774 . C CA 0 PASS DP=36;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:10,3:7,2 +chr8 61523320 . C T 0 PASS DP=51;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,5:7,1:1,4 +chr8 62595382 . C CTT 0 PASS DP=24;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:2,5:2,1 +chr8 63133416 . C CTT 0 PASS DP=46;GPV=1;SPV=0.027027;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:6,3:10,3 +chr8 64939647 . C T 0 PASS DP=64;GPV=1;SPV=2.3884e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:9,7:8,9 +chr8 65268629 . A C 0 PASS DP=68;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:38:1,3:1,1:0,2 +chr8 66521790 . GGAGAGAGAGA G 0 PASS DP=34;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1 +chr8 69230820 . GAT G 0 PASS DP=31;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,4:3,2:2,2 +chr8 69646938 . A ATTTT 0 PASS DP=35;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:6,3:6,4 +chr8 69904302 . A AT 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,4:7,4 +chr8 71041817 . C T 0 PASS DP=71;GPV=1;SPV=1.9669e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,22:8,12:11,10 +chr8 71790725 . A AGAAAGAAAG 0 PASS DP=34;GPV=1;SPV=0.0026087;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,1:2,5 +chr8 72732990 . T TA 0 PASS DP=78;GPV=1;SPV=2.7941e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,18:18,9:11,9 +chr8 73605866 . CACACACACACAT C 0 PASS DP=63;GPV=1;SPV=0.016096;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:21,6:6,4 +chr8 74188250 . T C 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,1:12,3 +chr8 75838937 . C CAA 0 PASS DP=34;GPV=1;SPV=0.015968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1 +chr8 76126828 . CAG C 0 PASS DP=47;GPV=1;SPV=0.0010258;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:13,8:3,2 +chr8 76444527 . GTATATA G 0 PASS DP=24;GPV=1;SPV=0.27668;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:2,1:11,2 +chr8 78627039 . C T 0 PASS DP=84;GPV=1;SPV=2.9228e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:8,8:18,14 +chr8 79201310 . G A 0 PASS DP=84;GPV=1;SPV=1.444e-11;SS=2;SSC=108;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:16,32:8,12:8,20 +chr8 79233810 . G A 0 PASS DP=69;GPV=1;SPV=0.00015011;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:8,5:18,9 +chr8 80362139 . A AG 0 PASS DP=43;GPV=1;SPV=0.007794;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,4:7,7 +chr8 83012785 . CT C 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,2:2,5 +chr8 83094532 . C A 0 PASS DP=53;GPV=1;SPV=0.00010136;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,4:8,7 +chr8 83847711 . CT C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,2:11,2 +chr8 84235767 . C CTT 0 PASS DP=49;GPV=1;SPV=0.03809;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,7:12,6:6,1 +chr8 85805567 . C A 0 PASS DP=274;GPV=1;SPV=0.025007;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:135,17:77,12:58,5 +chr8 85811985 . G A 0 PASS DP=38;GPV=1;SPV=0.27738;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,0:24,4 +chr8 86248962 . TAG T 0 PASS DP=61;GPV=1;SPV=0.084372;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,2:18,3 +chr8 86991392 . G C 0 PASS DP=80;GPV=1;SPV=1.487e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:12,7:15,8 +chr8 87297163 . CA C 0 PASS DP=29;GPV=1;SPV=0.012217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:0,6:2,1 +chr8 87428135 . C A 0 PASS DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,1:7,3 +chr8 88416538 . G A 0 PASS DP=94;GPV=1;SPV=4.3416e-10;SS=2;SSC=93;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:24,30:13,15:11,15 +chr8 88956317 . A T 0 PASS DP=68;GPV=1;SPV=0.0050026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:16,2:17,9 +chr8 89638936 . T A 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,4:6,1 +chr8 90370514 . AT A 0 PASS DP=80;GPV=1;SPV=4.6848e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:7,4:15,9 +chr8 91755145 . G C 0 PASS DP=57;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:7,5:4,2:3,3 +chr8 91755147 . G C 0 PASS DP=56;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,4:3,2:4,2 +chr8 92247825 . CTTCTTTCTTTCT C 0 PASS DP=52;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,9:4,4:16,5 +chr8 92439776 . C CA 0 PASS DP=58;GPV=1;SPV=0.0095875;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,9:14,8:6,1 +chr8 93412693 . T TA 0 PASS DP=63;GPV=1;SPV=0.00014964;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:17,12:7,5 +chr8 93644645 . T TTATA 0 PASS DP=30;GPV=1;SPV=0.0044739;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,3:2,3 +chr8 94690276 . A ATT 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,3:12,1 +chr8 94705156 . CTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,3:3,2 +chr8 94708595 . CTTTT C 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,3:4,3 +chr8 95245992 . C CT 0 PASS DP=49;GPV=1;SPV=0.014795;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,9:15,7:7,2 +chr8 96309193 . GTTTT G 0 PASS DP=27;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:6,3:1,1 +chr8 97732895 . C CA 0 PASS DP=36;GPV=1;SPV=0.1114;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,6:14,2:3,4 +chr8 97900258 . C T 0 PASS DP=102;GPV=1;SPV=1.216e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:35,25:18,16:17,9 +chr8 99438034 . C CTT 0 PASS DP=29;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:6,6:1,1 +chr8 100925460 . A G 0 PASS DP=80;GPV=1;SPV=1.0869e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:11,11:17,6 +chr8 100935082 . G A 0 PASS DP=84;GPV=1;SPV=6.5574e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:12,11:9,7 +chr8 101656873 . G GACACACACACACACACACAC 0 PASS DP=60;GPV=1;SPV=0.016341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:19,4:6,2 +chr8 102762274 . C T 0 PASS DP=74;GPV=1;SPV=4.9905e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:12,14:10,9 +chr8 102770856 . G GCTCAAGTGATTCTCCCGC 0 PASS DP=83;GPV=1;SPV=0.031137;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:13,4:23,7 +chr8 102955075 . CTT C 0 PASS DP=45;GPV=1;SPV=0.0049208;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:5,2:7,10 +chr8 103533661 . C CA 0 PASS DP=42;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:8,6:3,1 +chr8 107282553 . C CAT 0 PASS DP=23;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,3:3,2 +chr8 107906379 . A T 0 PASS DP=54;GPV=1;SPV=0.20884;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,1:18,3 +chr8 108008782 . A C 0 PASS DP=43;GPV=1;SPV=0.025371;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,8:8,1 +chr8 108233836 . CA C 0 PASS DP=32;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,12:6,11:0,1 +chr8 110181574 . G GT 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,3:0,1 +chr8 110898449 . C T 0 PASS DP=75;GPV=1;SPV=4.2772e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,6:13,7 +chr8 111912027 . T C 0 PASS DP=31;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:6,2:7,2 +chr8 113954535 . G A 0 PASS DP=69;GPV=1;SPV=0.077418;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,5:12,3:12,2 +chr8 115691028 . C T 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:8,1:20,3 +chr8 117284889 . T C 0 PASS DP=62;GPV=1;SPV=9.5575e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:10,6:9,12 +chr8 117409285 . T A 0 PASS DP=75;GPV=1;SPV=1.4245e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:12,4:8,11 +chr8 117968552 . TA T 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3 +chr8 118132970 . GTGTATATATATATA G 0 PASS DP=19;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:5,3:0,2 +chr8 118165618 . A G 0 PASS DP=21;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,3:4,2:0,1 +chr8 118257784 . G A 0 PASS DP=64;GPV=1;SPV=2.8879e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,6:8,5 +chr8 119490725 . C T 0 PASS DP=90;GPV=1;SPV=1.6652e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:10,10:18,12 +chr8 122065748 . C A 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,6:12,2 +chr8 123007749 . ATTTTTTTTTTTTTTT A 0 PASS DP=36;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:4,3:7,4 +chr8 123936462 . G GTT 0 PASS DP=29;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:7,4:5,1 +chr8 124717411 . T A 0 PASS DP=73;GPV=1;SPV=0.049892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,4:16,1 +chr8 125316732 . T TTTCCTTCCTTCCTTCCTTCC 0 PASS DP=21;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,0:4,2 +chr8 125376818 . CTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:1,5:5,1 +chr8 126443782 . T TA 0 PASS DP=48;GPV=1;SPV=0.0105;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:13,7:8,2 +chr8 126983830 . G A 0 PASS DP=53;GPV=1;SPV=0.038251;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,2:12,9 +chr8 129496996 . GTA G 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,2:9,2 +chr8 129991943 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:11,3:2,1 +chr8 130920144 . T TAA 0 PASS DP=51;GPV=1;SPV=0.0036197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,7:7,3 +chr8 131396100 . G A 0 PASS DP=71;GPV=1;SPV=7.0926e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:6,11:10,7 +chr8 133441437 . C T 0 PASS DP=27;GPV=1;SPV=0.037185;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:0,1:9,5 +chr8 133880995 . A G 0 PASS DP=72;GPV=1;SPV=9.2295e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,28:8,14:11,14 +chr8 134215454 . C CTTTTTTTTTT 0 PASS DP=38;GPV=1;SPV=0.016716;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,3:6,3 +chr8 135751485 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,3:11,1 +chr8 136094179 . CT C 0 PASS DP=26;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,1:4,3 +chr8 138609088 . T G 0 PASS DP=81;GPV=1;SPV=3.6989e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:29,23:16,8:13,15 +chr8 141252918 . T C 0 PASS DP=51;GPV=1;SPV=0.031133;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:10,6:13,6 +chr8 141789461 . G A 0 PASS DP=114;GPV=1;SPV=1.0504e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:37,26:10,9:27,17 +chr8 141872048 . A G 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3 +chr8 142223287 . TAC T 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chr8 142223297 . A T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr8 143119856 . TAA T 0 PASS DP=87;GPV=1;SPV=0.026101;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:20,2:22,4 +chr9 13542 . T A 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,5:11,5 +chr9 55850 . C T 0 PASS DP=81;GPV=1;SPV=0.032946;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:20,3:19,6 +chr9 671559 . C T 0 PASS DP=63;GPV=1;SPV=0.04886;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:15,7:17,4 +chr9 911470 . ATTTTTTTTTTTTTTTTTT A 0 PASS DP=44;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,12:6,7:8,5 +chr9 1837598 . G A 0 PASS DP=71;GPV=1;SPV=5.2009e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:16,6:10,10 +chr9 2488782 . ATATATATATATATTTTTTTTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1 +chr9 3505365 . AT A 0 PASS DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:19,4:7,2 +chr9 3505482 . TA T 0 PASS DP=63;GPV=1;SPV=0.081913;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:29,3:5,2 +chr9 4545189 . G GTCTCTCTCTCTCTC 0 PASS DP=52;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:9,5:9,3 +chr9 5113191 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.012653;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:3,4:7,1 +chr9 6697718 . C CA 0 PASS DP=29;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:5,9:3,1 +chr9 7424942 . C T 0 PASS DP=77;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:20,4:11,1:9,3 +chr9 11665189 . CT C 0 PASS DP=47;GPV=1;SPV=0.00018113;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,6:5,5 +chr9 12366212 . C T 0 PASS DP=81;GPV=1;SPV=1.3654e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:13,5:8,13 +chr9 12477580 . T C 0 PASS DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,2:7,4 +chr9 12541727 . G T 0 PASS DP=70;GPV=1;SPV=0.01961;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:14,2:14,3 +chr9 13330806 . C A 0 PASS DP=89;GPV=1;SPV=1.9695e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:20,8:12,7 +chr9 13691837 . G T 0 PASS DP=73;GPV=1;SPV=5.02e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,11:11,6 +chr9 14886321 . G A 0 PASS DP=54;GPV=1;SPV=0.022446;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,2:10,9 +chr9 14976300 . C A 0 PASS DP=44;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,7:3,1:3,6 +chr9 15341116 . T C 0 PASS DP=55;GPV=1;SPV=0.048842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:8,1:18,4 +chr9 17185771 . T TTGTGTGTGTGTGTGTG 0 PASS DP=54;GPV=1;SPV=0.018613;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,12:17,9:4,3 +chr9 17366310 . A G 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,3:18,1 +chr9 17599600 . C T 0 PASS DP=79;GPV=1;SPV=1.015e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,13:10,7 +chr9 18267771 . AAAAC A 0 PASS DP=74;GPV=1;SPV=0.075844;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:19,3:21,2 +chr9 18359827 . G C 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:0,0:5,2 +chr9 18756076 . AATATATAT A 0 PASS DP=26;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:9,2:3,3 +chr9 19321788 . C T 0 PASS DP=65;GPV=1;SPV=4.6028e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:9,5:10,12 +chr9 19382844 . C CT 0 PASS DP=50;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:9,5:9,6 +chr9 19540910 . G T 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,1:15,3 +chr9 20573193 . T G 0 PASS DP=66;GPV=1;SPV=0.083854;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:21,3:15,2 +chr9 21209735 . G T 0 PASS DP=83;GPV=1;SPV=0.016144;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:18,3:25,5 +chr9 21355822 . C G 0 PASS DP=69;GPV=1;SPV=0.089571;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:23,4:18,2 +chr9 22126574 . C CT 0 PASS DP=34;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:16,5:2,1 +chr9 23194075 . T C 0 PASS DP=74;GPV=1;SPV=3.6904e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:19,29:9,19:10,10 +chr9 24804384 . A AATATAT 0 PASS DP=29;GPV=1;SPV=0.15;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,7:6,3:0,4 +chr9 24872725 . GTGTGTGTGTA G 0 PASS DP=46;GPV=1;SPV=0.038035;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:8,4:15,3 +chr9 26123501 . A AT 0 PASS DP=41;GPV=1;SPV=0.0050173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,9:5,3 +chr9 26334676 . G GCACACACACA 0 PASS DP=40;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,9:8,4:1,5 +chr9 26434898 . TA T 0 PASS DP=52;GPV=1;SPV=5.8963e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:7,6:8,7 +chr9 27532584 . A C 0 PASS DP=60;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:4,2:3,1:1,1 +chr9 28062576 . C A 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:20,2:9,2 +chr9 32130820 . CAAAA C 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:10,4:2,1 +chr9 32900610 . T C 0 PASS DP=36;GPV=1;SPV=0.19342;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:8,2:14,4 +chr9 32900627 . T C 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,1:12,4 +chr9 33554181 . A AAAAGAAAGAAAG 0 PASS DP=51;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,9:14,5:6,4 +chr9 34142503 . ATTTT A 0 PASS DP=32;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:9,2:4,3 +chr9 34593490 . G T 0 PASS DP=84;GPV=1;SPV=2.1109e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:18,9:10,10 +chr9 35030338 . T C 0 PASS DP=88;GPV=1;SPV=0.03499;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:23,4:18,1 +chr9 35897023 . T TTTATTATTA 0 PASS DP=51;GPV=1;SPV=0.032315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:11,5:8,2 +chr9 35950813 . G A 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,4:8,6 +chr9 36061393 . T TACACACACAC 0 PASS DP=48;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:7,4:1,4 +chr9 37379213 . TTA T 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2 +chr9 38239622 . C T 0 PASS DP=41;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,4:1,0:13,4 +chr9 38419888 . C CCTT 0 PASS DP=50;GPV=1;SPV=0.012101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,12:6,3:8,9 +chr9 38816954 . G A 0 PASS DP=32;GPV=1;SPV=0.29549;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1 +chr9 38969560 . C T 0 PASS DP=137;GPV=1;SPV=0.0051636;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:67,22:32,9:35,13 +chr9 38988871 . G A 0 PASS DP=95;GPV=1;SPV=0.044421;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,8:37,7:4,1 +chr9 39128880 . G T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,6:6,1 +chr9 39372028 . G A 0 PASS DP=24;GPV=1;SPV=0.017499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,4:2,4 +chr9 39400748 . T G 0 PASS DP=99;GPV=1;SPV=0.041731;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,5:19,1 +chr9 39405589 . T TA 0 PASS DP=34;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,4:4,3 +chr9 39509905 . A G 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,3:11,2 +chr9 39532000 . T C 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,3:13,1 +chr9 39595207 . G A 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:17,3:7,2 +chr9 39667342 . T C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr9 39745305 . A C 0 PASS DP=42;GPV=1;SPV=0.018809;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,3:8,5 +chr9 39820099 . G A 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,1:9,6 +chr9 40145659 . C T 0 PASS DP=21;GPV=1;SPV=0.042105;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr9 40183672 . T C 0 PASS DP=64;GPV=1;SPV=0.0013579;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:16,11:4,3 +chr9 40285600 . TA T 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:28,4:0,0 +chr9 40285614 . T G 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0 +chr9 40298133 . C T 0 PASS DP=52;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,3:7,2 +chr9 40299278 . A G 0 PASS DP=94;GPV=1;SPV=0.00068097;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:20,7:25,8 +chr9 40306702 . G A 0 PASS DP=312;GPV=1;SPV=0.020139;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:168,21:77,12:91,9 +chr9 40335612 . C T 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:1,0:27,4 +chr9 40579635 . T C 0 PASS DP=114;GPV=1;SPV=0.043937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:51,14:17,10:34,4 +chr9 40611077 . G A 0 PASS DP=84;GPV=1;SPV=0.020406;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:28,8:9,4 +chr9 40661826 . C CTT 0 PASS DP=29;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,3:4,2 +chr9 40697499 . T C 0 PASS DP=88;GPV=1;SPV=0.00087959;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:16,6:19,8 +chr9 40960658 . A T 0 PASS DP=198;GPV=1;SPV=0.0098875;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:91,22:43,18:48,4 +chr9 40998632 . G T 0 PASS DP=356;GPV=1;SPV=0.03833;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:143,24:85,6:58,18 +chr9 41108289 . T A 0 PASS DP=61;GPV=1;SPV=0.054568;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:22,4:8,1 +chr9 41113935 . G A 0 PASS DP=205;GPV=1;SPV=0.016601;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:92,24:54,13:38,11 +chr9 41118301 . A G 0 PASS DP=77;GPV=1;SPV=0.01951;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:14,7:15,5 +chr9 41145993 . A G 0 PASS DP=46;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,2:10,2 +chr9 41146643 . T A 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr9 41242173 . T G 0 PASS DP=117;GPV=1;SPV=0.0084226;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:24,2:34,6 +chr9 41242177 . T C 0 PASS DP=119;GPV=1;SPV=0.0073237;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:22,2:36,6 +chr9 41362484 . C T 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chr9 41630797 . C T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,2:1,2 +chr9 41688986 . G A 0 PASS DP=64;GPV=1;SPV=0.029805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,3:11,7 +chr9 41968416 . T G 0 PASS DP=32;GPV=1;SPV=0.072836;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4 +chr9 42042742 . G A 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr9 42089151 . G GAGA 0 PASS DP=34;GPV=1;SPV=0.0070885;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,3:1,4 +chr9 42089154 . A G 0 PASS DP=36;GPV=1;SPV=0.024846;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,3:3,4 +chr9 42103937 . A G 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr9 42323965 . G A 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2 +chr9 42956074 . C CTT 0 PASS DP=31;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:5,2:2,4 +chr9 43039861 . C T 0 PASS DP=62;GPV=1;SPV=0.067362;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:16,1:16,4 +chr9 43297666 . T C 0 PASS DP=129;GPV=1;SPV=0.027641;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:65,9:31,6:34,3 +chr9 43497197 . A G 0 PASS DP=88;GPV=1;SPV=0.031187;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:23,2:17,3 +chr9 43620679 . G A 0 PASS DP=240;GPV=1;SPV=0.041516;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:120,14:78,10:42,4 +chr9 43668116 . C T 0 PASS DP=31;GPV=1;SPV=0.015732;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr9 43689780 . G T 0 PASS DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:15,1:1,4 +chr9 43768939 . T A 0 PASS DP=115;GPV=1;SPV=0.020875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:14,3:41,6 +chr9 43841173 . C G 0 PASS DP=74;GPV=1;SPV=0.043968;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:13,1:26,5 +chr9 43916288 . C T 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr9 44023533 . G A 0 PASS DP=103;GPV=1;SPV=0.021109;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:24,8:22,3 +chr9 44099639 . T G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 44201242 . C A 0 PASS DP=17;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:5,2:1,1 +chr9 44338865 . C G 0 PASS DP=37;GPV=1;SPV=0.29601;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:2,1:20,2 +chr9 44440552 . T A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,4:1,0 +chr9 44453150 . T C 0 PASS DP=56;GPV=1;SPV=0.027179;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:24,5:5,3 +chr9 44542024 . A T 0 PASS DP=67;GPV=1;SPV=0.088082;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:27,2:10,3 +chr9 44688356 . G T 0 PASS DP=113;GPV=1;SPV=0.00097947;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:27,5:15,6 +chr9 45123859 . G C 0 PASS DP=44;GPV=1;SPV=0.13372;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:5,1:15,2 +chr9 45174115 . G A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr9 45294434 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3 +chr9 45374637 . C G 0 PASS DP=76;GPV=1;SPV=0.037223;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:9,5:22,7 +chr9 45389007 . C G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr9 60680938 . A T 0 PASS DP=149;GPV=1;SPV=0.042221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:64,16:39,11:25,5 +chr9 61224599 . C T 0 PASS DP=86;GPV=1;SPV=0.028374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:19,2:22,7 +chr9 61837378 . AC A 0 PASS DP=84;GPV=1;SPV=0.044803;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:27,6:21,1 +chr9 61931359 . G A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr9 61940002 . G GT 0 PASS DP=59;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,8:10,4:5,4 +chr9 62801828 . C T 0 PASS DP=315;GPV=1;SPV=0.031186;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:148,29:68,12:80,17 +chr9 62802684 . G A 0 PASS DP=452;GPV=1;SPV=0.043558;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:230,34:112,16:118,18 +chr9 62803933 . C G 0 PASS DP=445;GPV=1;SPV=0.014385;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:200,36:99,23:101,13 +chr9 62815266 . A T 0 PASS DP=347;GPV=1;SPV=0.0124;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:146,33:78,16:68,17 +chr9 62815267 . T C 0 PASS DP=362;GPV=1;SPV=0.014244;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:157,34:85,17:72,17 +chr9 62819905 . G T 0 PASS DP=92;GPV=1;SPV=0.036683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:15,4:31,5 +chr9 62824658 . G A 0 PASS DP=290;GPV=1;SPV=0.00626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:152,28:77,15:75,13 +chr9 62829944 . C A 0 PASS DP=157;GPV=1;SPV=0.012578;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:78,17:8,5:70,12 +chr9 62829977 . A C 0 PASS DP=133;GPV=1;SPV=0.00014198;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:59,19:1,1:58,18 +chr9 62832774 . G A 0 PASS DP=24;GPV=1;SPV=0.01087;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,1:4,4 +chr9 62836383 . A G 0 PASS DP=196;GPV=1;SPV=0.047996;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:87,15:32,11:55,4 +chr9 62899957 . C G 0 PASS DP=142;GPV=1;SPV=0.017492;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:64,16:34,10:30,6 +chr9 62917536 . G A 0 PASS DP=85;GPV=1;SPV=0.025934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:22,2:15,3 +chr9 62917779 . T G 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,0:19,4 +chr9 62921641 . T C 0 PASS DP=135;GPV=1;SPV=0.04637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:63,14:30,8:33,6 +chr9 63157556 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr9 63283693 . G A 0 PASS DP=50;GPV=1;SPV=0.1146;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,4:12,4 +chr9 63757391 . C T 0 PASS DP=88;GPV=1;SPV=0.0022355;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:15,14:17,3 +chr9 63764445 . G A 0 PASS DP=253;GPV=1;SPV=0.019648;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:130,20:71,12:59,8 +chr9 63767998 . A T 0 PASS DP=170;GPV=1;SPV=0.023725;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:74,11:59,7:15,4 +chr9 63777282 . C A 0 PASS DP=157;GPV=1;SPV=0.014641;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:78,13:49,2:29,11 +chr9 63809392 . C G 0 PASS DP=416;GPV=1;SPV=0.028429;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:196,27:109,18:87,9 +chr9 63841203 . G GTTAA 0 PASS DP=142;GPV=1;SPV=0.0017596;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:63,13:36,2:27,11 +chr9 63872967 . TG T 0 PASS DP=100;GPV=1;SPV=0.0070763;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:43,18:24,7:19,11 +chr9 64329169 . A G 0 PASS DP=68;GPV=1;SPV=0.040505;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:20,5:11,3 +chr9 64330435 . T C 0 PASS DP=75;GPV=1;SPV=0.049831;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:31,7:9,4 +chr9 64365022 . T A 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr9 64399530 . G A 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,2:14,2 +chr9 64435226 . T C 0 PASS DP=56;GPV=1;SPV=0.020146;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,1:13,8 +chr9 64789412 . G A 0 PASS DP=66;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,4:0,0:31,4 +chr9 64910453 . CTTTT C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr9 64918204 . T C 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,1:10,3 +chr9 65563407 . A G 0 PASS DP=78;GPV=1;SPV=0.0045803;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:13,8:18,7 +chr9 65702685 . G A 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:1,1:12,10 +chr9 65742989 . C A 0 PASS DP=51;GPV=1;SPV=0.017241;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,7:13,2 +chr9 65822249 . C T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr9 65908897 . A C 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr9 66014140 . G T 0 PASS DP=124;GPV=1;SPV=0.029558;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:54,17:25,9:29,8 +chr9 66031656 . GTATAA G 0 PASS DP=167;GPV=1;SPV=0.014734;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:85,17:40,9:45,8 +chr9 66031662 . G C 0 PASS DP=167;GPV=1;SPV=0.0092019;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:83,18:38,10:45,8 +chr9 66176323 . A G 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr9 66246819 . A G 0 PASS DP=144;GPV=1;SPV=0.018937;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:61,19:38,13:23,6 +chr9 66343510 . C G 0 PASS DP=87;GPV=1;SPV=0.019321;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:6,9:28,3 +chr9 66384998 . G T 0 PASS DP=25;GPV=1;SPV=0.0079095;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,1:3,7 +chr9 66702087 . G C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,3:12,1 +chr9 66740151 . AAC A 0 PASS DP=27;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:11,2:2,2 +chr9 66810630 . T G 0 PASS DP=73;GPV=1;SPV=0.016944;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:15,5:16,8 +chr9 66813660 . TTTTG T 0 PASS DP=121;GPV=1;SPV=0.0047712;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:38,11:17,4 +chr9 66831566 . G C 0 PASS DP=105;GPV=1;SPV=0.038208;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:23,3:37,4 +chr9 66843453 . G A 0 PASS DP=176;GPV=1;SPV=9.6213e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:77,28:35,10:42,18 +chr9 67394112 . G C 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,2:7,4 +chr9 67394154 . TG T 0 PASS DP=22;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:0,1:6,4 +chr9 67428071 . G A 0 PASS DP=18;GPV=1;SPV=0.00761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:0,4:2,3 +chr9 67462701 . A G 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr9 67760386 . T A 0 PASS DP=221;GPV=1;SPV=0.029858;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:105,21:56,11:49,10 +chr9 67787556 . A T 0 PASS DP=86;GPV=1;SPV=0.024045;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:38,16:5,7:33,9 +chr9 67889140 . T C 0 PASS DP=57;GPV=1;SPV=0.1041;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:8,1:24,4 +chr9 68272928 . G A 0 PASS DP=18;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,3:4,3 +chr9 68303202 . C T 0 PASS DP=39;GPV=1;SPV=0.011954;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:1,5:15,3 +chr9 70570302 . GTT G 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,6:3,1 +chr9 71282430 . A G 0 PASS DP=69;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,4:13,2:4,2 +chr9 72662352 . AT A 0 PASS DP=43;GPV=1;SPV=0.0074587;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,3:9,5 +chr9 73430930 . GTCTATTCTATTCTAT G 0 PASS DP=64;GPV=1;SPV=0.015771;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,11:6,8:12,3 +chr9 73951254 . C T 0 PASS DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:15,4:16,8 +chr9 77054665 . T C 0 PASS DP=48;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:16,1:9,3 +chr9 77136184 . CT C 0 PASS DP=33;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:8,3:1,5 +chr9 77761294 . T C 0 PASS DP=27;GPV=1;SPV=0.00035596;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:2,4:3,6 +chr9 77853774 . C CA 0 PASS DP=26;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,5:3,1 +chr9 77889410 . CAAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,7:6,3 +chr9 78048583 . AAC A 0 PASS DP=27;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,6:2,1 +chr9 80147181 . A G 0 PASS DP=73;GPV=1;SPV=3.6753e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:13,7:10,11 +chr9 80259058 . G T 0 PASS DP=61;GPV=1;SPV=1.9053e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:14,26:5,16:9,10 +chr9 80545519 . T G 0 PASS DP=43;GPV=1;SPV=0.01398;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,7:8,2 +chr9 81583255 . A AGAGAAC 0 PASS DP=33;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:9,2:7,4 +chr9 81739537 . T C 0 PASS DP=59;GPV=1;SPV=0.0029219;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:11,5:14,5 +chr9 82274114 . TAG T 0 PASS DP=79;GPV=1;SPV=2.7557e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:8,8:11,4 +chr9 83612064 . AGT A 0 PASS DP=61;GPV=1;SPV=3.6034e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,13:8,3 +chr9 85132495 . C T 0 PASS DP=93;GPV=1;SPV=1.2378e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:27,26:16,19:11,7 +chr9 85245751 . CA C 0 PASS DP=58;GPV=1;SPV=2.7762e-07;SS=2;SSC=65;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,21:7,9:6,12 +chr9 85454708 . ATG A 0 PASS DP=56;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,4:8,2:14,2 +chr9 85795856 . G GT 0 PASS DP=25;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1 +chr9 86031449 . G GT 0 PASS DP=41;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:7,4:7,1 +chr9 86462953 . C T 0 PASS DP=50;GPV=1;SPV=0.119;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,1:18,3 +chr9 86808629 . C CT 0 PASS DP=51;GPV=1;SPV=0.0050488;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,7:10,3 +chr9 86948027 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5 +chr9 88873077 . G GGA 0 PASS DP=30;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:5,5:2,2 +chr9 89709437 . C T 0 PASS DP=57;GPV=1;SPV=0.04473;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:5,1:24,5 +chr9 89709444 . C CTT 0 PASS DP=65;GPV=1;SPV=0.10395;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:12,1:21,3 +chr9 89763019 . A AACACACACACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,3:5,2 +chr9 90622276 . T TCATA 0 PASS DP=65;GPV=1;SPV=0.0016804;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,15:9,5:12,10 +chr9 91744213 . C CT 0 PASS DP=28;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:2,6:4,4 +chr9 92939400 . C T 0 PASS DP=72;GPV=1;SPV=6.5439e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,7:11,10 +chr9 94529740 . T C 0 PASS DP=31;GPV=1;SPV=0.23366;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:7,1:2,3 +chr9 95683965 . T TA 0 PASS DP=70;GPV=1;SPV=0.00022877;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,11:9,7:15,4 +chr9 97729466 . A ATTTTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:4,3:7,1 +chr9 100762761 . T TACAC 0 PASS DP=34;GPV=1;SPV=0.029832;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,4:3,4 +chr9 100879022 . G GAAAAA 0 PASS DP=20;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1 +chr9 101495140 . GATTTTATATATATTATAT G 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,1:4,4 +chr9 103169408 . T C 0 PASS DP=56;GPV=1;SPV=1.6294e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,18:5,7:6,11 +chr9 103557358 . CA C 0 PASS DP=44;GPV=1;SPV=0.0088148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:16,5:2,3 +chr9 107096076 . C CGTGT 0 PASS DP=57;GPV=1;SPV=0.010144;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:15,9:5,4 +chr9 107256003 . CT C 0 PASS DP=21;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1 +chr9 107561912 . CT C 0 PASS DP=34;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,9:5,5:5,4 +chr9 108416311 . CA C 0 PASS DP=56;GPV=1;SPV=0.00015298;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,23:8,14:8,9 +chr9 109066452 . C CAA 0 PASS DP=39;GPV=1;SPV=0.0019577;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,6:4,2 +chr9 109657938 . T TTGTGTGTG 0 PASS DP=58;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:12,10:6,8:6,2 +chr9 110422681 . A T 0 PASS DP=45;GPV=1;SPV=0.24135;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,3:14,1 +chr9 111209287 . A C 0 PASS DP=72;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,4:9,2:12,2 +chr9 111551400 . GTT G 0 PASS DP=40;GPV=1;SPV=0.035343;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:14,4:2,1 +chr9 111580755 . C CA 0 PASS DP=60;GPV=1;SPV=0.010105;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:12,8:3,1 +chr9 111642052 . G A 0 PASS DP=68;GPV=1;SPV=0.1172;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:12,1:28,4 +chr9 112077499 . CTTTTT C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,2:3,2 +chr9 113264864 . C CAA 0 PASS DP=49;GPV=1;SPV=0.03376;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,6:14,3:5,3 +chr9 114528246 . T TA 0 PASS DP=51;GPV=1;SPV=0.031133;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,7:10,5 +chr9 115953384 . C T 0 PASS DP=73;GPV=1;SPV=4.0078e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:8,6:8,12 +chr9 117108438 . A AACACAC 0 PASS DP=40;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,5:5,3:4,2 +chr9 117986268 . GT G 0 PASS DP=35;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,10:8,6:2,4 +chr9 119202281 . C A 0 PASS DP=69;GPV=1;SPV=5.2897e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:10,11:12,8 +chr9 120033961 . TTGTGTGTGTG T 0 PASS DP=70;GPV=1;SPV=0.00042941;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,17:11,12:7,5 +chr9 120351269 . A T 0 PASS DP=78;GPV=1;SPV=6.2631e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:19,15:9,7 +chr9 120495863 . C T 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr9 121826153 . A AAT 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,6:4,1 +chr9 122833485 . CT C 0 PASS DP=29;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,3:5,2 +chr9 122859252 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:5,6:5,2 +chr9 122860405 . CTT C 0 PASS DP=34;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,9:3,7:0,2 +chr9 124093281 . C CTG 0 PASS DP=61;GPV=1;SPV=0.028506;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,7:9,7 +chr9 124292992 . C A 0 PASS DP=95;GPV=1;SPV=2.5627e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:18,12:11,7 +chr9 124670216 . CA C 0 PASS DP=50;GPV=1;SPV=0.042069;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:12,6:10,4 +chr9 125401768 . A T 0 PASS DP=85;GPV=1;SPV=0.034336;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:25,2:24,6 +chr9 126850541 . A AT 0 PASS DP=24;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:0,1:4,5 +chr9 126894705 . CT C 0 PASS DP=42;GPV=1;SPV=0.0022883;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,12:3,10:2,2 +chr9 128124186 . C T 0 PASS DP=88;GPV=1;SPV=1.3687e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:5,18:19,6 +chr9 129454508 . G GTGGTGGAGA 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:9,4:0,0 +chr9 130140524 . G A 0 PASS DP=91;GPV=1;SPV=6.7374e-10;SS=2;SSC=91;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:22,26:10,13:12,13 +chr9 130542924 . C CGAGCGAGAGAGAGAGAGAGAGA 0 PASS DP=46;GPV=1;SPV=0.14804;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,5:9,2:16,3 +chr9 131335733 . CCTTTCT C 0 PASS DP=36;GPV=1;SPV=0.053977;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr9 131363925 . C CTTTTTTT 0 PASS DP=21;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,7:3,6:1,1 +chr9 131430510 . TATAGATAG T 0 PASS DP=60;GPV=1;SPV=0.0096647;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,5:7,5 +chr9 131435307 . G GA 0 PASS DP=36;GPV=1;SPV=0.0094835;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:12,8:1,1 +chr9 131760905 . G T 0 PASS DP=47;GPV=1;SPV=0.037533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,7:8,4:3,3 +chr9 132964743 . CT C 0 PASS DP=37;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:3,4:6,3 +chr9 133682710 . T C 0 PASS DP=41;GPV=1;SPV=0.0017035;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:3,5:6,7 +chr9 134089610 . A AAAAT 0 PASS DP=72;GPV=1;SPV=0.049775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,11:12,6:16,5 +chr9 134847041 . A G 0 PASS DP=64;GPV=1;SPV=0.064403;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,1:12,3 +chr9 134945705 . G GAGGGCAGAGGGCAGAGGGCAA 0 PASS DP=62;GPV=1;SPV=0.031259;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,6:10,2:16,4 +chr9 135041240 . G A 0 PASS DP=66;GPV=1;SPV=3.3531e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,17:6,7:4,10 +chr9 136174238 . A G 0 PASS DP=35;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:9,1:5,3 +chr9 137001013 . TGACCTCGGGGGCGGCGA T 0 PASS DP=47;GPV=1;SPV=0.15645;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,5:21,3:5,2 +chr9 137329978 . G A 0 PASS DP=16;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,1:4,1 +chr9 137401152 . C CT 0 PASS DP=32;GPV=1;SPV=0.013393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:5,4:3,4 +chr9 137693588 . A G 0 PASS DP=36;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:1,1:18,3 +chr9 137824174 . G A 0 PASS DP=70;GPV=1;SPV=9.9241e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:14,5:3,6 +chr9 137861559 . TTTTTC T 0 PASS DP=35;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:6,2:7,4 +chr9 138029609 . CTT C 0 PASS DP=45;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,10:1,7:5,3 +chr9 138203561 . G A 0 PASS DP=51;GPV=1;SPV=0.047988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,5:10,2:11,3 +chrX 2932395 . C G 0 PASS DP=39;GPV=1;SPV=0.016632;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,2:7,4 +chrX 4067377 . T C 0 PASS DP=20;GPV=1;SPV=5.9538e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,9:0,2:0,7 +chrX 4067401 . TC T 0 PASS DP=18;GPV=1;SPV=0.0045249;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,1:3,5 +chrX 5378042 . GT G 0 PASS DP=27;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:5,5:2,7 +chrX 5847356 . T G 0 PASS DP=23;GPV=1;SPV=9.6148e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,10:1,3:0,7 +chrX 7279309 . A G 0 PASS DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,2:6,3 +chrX 8407352 . CTTTTT C 0 PASS DP=27;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:8,5:1,1 +chrX 9082385 . AG A 0 PASS DP=29;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,2:2,2 +chrX 9276951 . TTTTG T 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chrX 9413118 . T A 0 PASS DP=31;GPV=1;SPV=0.040535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,7:9,1 +chrX 9414048 . A G 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:15,7:5,2 +chrX 10685877 . T TAC 0 PASS DP=26;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:3,5:2,4 +chrX 11005587 . A AT 0 PASS DP=32;GPV=1;SPV=9.592e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:2,6:4,5 +chrX 16716483 . C T 0 PASS DP=38;GPV=1;SPV=3.1646e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:4,14:2,8:2,6 +chrX 16964812 . CG C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,3:16,1 +chrX 19345572 . TA T 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,4:5,2 +chrX 20810590 . C T 0 PASS DP=34;GPV=1;SPV=1.0776e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,14:0,6:1,8 +chrX 24882684 . G GGTGTGTGT 0 PASS DP=19;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:1,2:0,3 +chrX 26157137 . C A 0 PASS DP=38;GPV=1;SPV=5.9414e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:2,19:1,10:1,9 +chrX 26320245 . T C 0 PASS DP=46;GPV=1;SPV=0.32086;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:17,1:14,3 +chrX 26543486 . C G 0 PASS DP=38;GPV=1;SPV=6.8795e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:2,20:1,13:1,7 +chrX 28969902 . AAC A 0 PASS DP=32;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chrX 34715810 . C T 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chrX 36133730 . C G 0 PASS DP=33;GPV=1;SPV=1.744e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,12:4,7:1,5 +chrX 36618496 . A C 0 PASS DP=36;GPV=1;SPV=1.3684e-10;SS=2;SSC=98;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:0,16:0,9:0,7 +chrX 40246808 . CA C 0 PASS DP=24;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:2,9:2,2 +chrX 40380891 . G A 0 PASS DP=41;GPV=1;SPV=3.1782e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:3,25:0,11:3,14 +chrX 42053561 . CA C 0 PASS DP=24;GPV=1;SPV=0.00067304;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,4:2,4 +chrX 44165536 . G A 0 PASS DP=49;GPV=1;SPV=8.169e-12;SS=2;SSC=110;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:2,20:0,10:2,10 +chrX 44797121 . C CTT 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chrX 46893247 . A AT 0 PASS DP=33;GPV=1;SPV=8.3047e-07;SS=2;SSC=60;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:3,14:1,8:2,6 +chrX 49060427 . CAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:2,5:6,7 +chrX 52553396 . G A 0 PASS DP=48;GPV=1;SPV=1.7328e-12;SS=2;SSC=117;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,28:0,19:1,9 +chrX 52792095 . A T 0 PASS DP=43;GPV=1;SPV=2.1862e-11;SS=2;SSC=106;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,20:0,13:1,7 +chrX 53098050 . C CA 0 PASS DP=16;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,4:2,1 +chrX 57865071 . T A 0 PASS DP=28;GPV=1;SPV=7.6201e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,9:0,1 +chrX 71412123 . T G 0 PASS DP=27;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:1,2:0,0 +chrX 73548458 . C CA 0 PASS DP=29;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:6,5:3,4 +chrX 73627137 . C CAA 0 PASS DP=18;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:1,7:0,1 +chrX 73729834 . AGAT A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,3:7,1 +chrX 75239816 . A T 0 PASS DP=44;GPV=1;SPV=1.0931e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:3,19:1,15:2,4 +chrX 77956726 . C CCTTT 0 PASS DP=34;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:4,4:10,1 +chrX 79119133 . T TTGTGTG 0 PASS DP=22;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,3:2,2 +chrX 79957198 . AGAGAGAGATG A 0 PASS DP=29;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,5:3,4:0,1 +chrX 83349506 . G A 0 PASS DP=37;GPV=1;SPV=2.4562e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:1,22:0,14:1,8 +chrX 83520862 . A G 0 PASS DP=34;GPV=1;SPV=1.6595e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:2,20:1,7:1,13 +chrX 83981200 . AAG A 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chrX 85257415 . A T 0 PASS DP=28;GPV=1;SPV=4.2733e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,15:0,5:1,10 +chrX 89835746 . A ATTT 0 PASS DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,1:5,1 +chrX 92910966 . C A 0 PASS DP=25;GPV=1;SPV=8.3212e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,16:0,10:1,6 +chrX 92953345 . TTATATATATATA T 0 PASS DP=33;GPV=1;SPV=0.22704;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:4,4:5,3 +chrX 93761563 . T G 0 PASS DP=34;GPV=1;SPV=5.0332e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:2,22:1,9:1,13 +chrX 94633618 . TCTA T 0 PASS DP=26;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:6,4:1,3 +chrX 95970112 . C CTAAT 0 PASS DP=24;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:2,7:2,3 +chrX 98286045 . G A 0 PASS DP=50;GPV=1;SPV=2.5916e-11;SS=2;SSC=105;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:3,22:1,11:2,11 +chrX 100853261 . C T 0 PASS DP=30;GPV=1;SPV=0.22398;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:4,2:9,2 +chrX 109217384 . T A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chrX 118044433 . G A 0 PASS DP=22;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,0:0,4 +chrX 118585845 . G C 0 PASS DP=39;GPV=1;SPV=1.96e-11;SS=2;SSC=107;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,22:0,10:0,12 +chrX 118929560 . T G 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2 +chrX 123434487 . T G 0 PASS DP=38;GPV=1;SPV=2.9781e-11;SS=2;SSC=105;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:0,18:0,10:0,8 +chrX 125161039 . T TA 0 PASS DP=30;GPV=1;SPV=0.00026653;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,14:3,11:3,3 +chrX 128814913 . T A 0 PASS DP=29;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:1,3:6,1 +chrX 130510191 . A ATGTGTGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:3,6:1,6 +chrX 133403133 . C T 0 PASS DP=30;GPV=1;SPV=2.1967e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,18:1,10:0,8 +chrX 134621444 . CA C 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chrX 137555032 . G A 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,1:3,3 +chrX 137664250 . T TTC 0 PASS DP=25;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:1,1:10,4 +chrX 145503667 . C CT 0 PASS DP=28;GPV=1;SPV=6.3565e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:2,6:2,5 +chrX 145548273 . CAAA C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chrX 145727300 . G GA 0 PASS DP=28;GPV=1;SPV=2.1794e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:2,8:1,2 +chrX 147574832 . GA G 0 PASS DP=42;GPV=1;SPV=1.9463e-12;SS=2;SSC=117;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:0,20:0,12:0,8 +chrX 148486637 . A G 0 PASS DP=31;GPV=1;SPV=6.7878e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,17:1,8:0,9 +chrX 151078786 . A T 0 PASS DP=30;GPV=1;SPV=2.1967e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:2,18:0,11:2,7 +chrX 151457070 . CA C 0 PASS DP=28;GPV=1;SPV=0.00041408;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:4,12:1,3 +chrX 151530151 . G GT 0 PASS DP=39;GPV=1;SPV=2.2344e-08;SS=2;SSC=76;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:3,19:1,14:2,5 +chrX 155077213 . T TA 0 PASS DP=46;GPV=1;SPV=9.4736e-09;SS=2;SSC=80;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:5,20:2,6:3,14 +chrY 3024501 . AT A 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chrY 3075729 . G A 0 PASS DP=41;GPV=1;SPV=0.03726;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4 +chrY 3092641 . G A 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,2:13,2 +chrY 3299174 . G GT 0 PASS DP=49;GPV=1;SPV=0.033408;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,2:7,4 +chrY 3489132 . T C 0 PASS DP=51;GPV=1;SPV=0.090128;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,3:12,3 +chrY 4766472 . C T 0 PASS DP=32;GPV=1;SPV=2.5454e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:2,16:1,8:1,8 +chrY 5416744 . A G 0 PASS DP=38;GPV=1;SPV=6.2541e-10;SS=2;SSC=92;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,20:0,8:1,12 +chrY 5658242 . T C 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,1:13,4 +chrY 5972856 . C A 0 PASS DP=50;GPV=1;SPV=0.01597;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,5:9,6 +chrY 8767437 . G C 0 PASS DP=48;GPV=1;SPV=4.2409e-12;SS=2;SSC=113;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:1,30:0,11:1,19 +chrY 9523481 . A C 0 PASS DP=119;GPV=1;SPV=0.01659;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:61,11:23,3:38,8 +chrY 9533996 . CAT C 0 PASS DP=102;GPV=1;SPV=0.028931;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:49,12:33,10:16,2 +chrY 10654088 . C T 0 PASS DP=30;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,5:3,4:4,1 +chrY 10963506 . C T 0 PASS DP=29;GPV=1;SPV=1.9269e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,12:0,3:0,9 +chrY 11097921 . G A 0 PASS DP=124;GPV=1;SPV=0.042491;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:63,15:31,11:32,4 +chrY 11105770 . A G 0 PASS DP=189;GPV=1;SPV=0.043833;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:94,12:44,5:50,7 +chrY 11142922 . T C 0 PASS DP=81;GPV=1;SPV=0.042579;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:15,1:21,6 +chrY 11144433 . C G 0 PASS DP=110;GPV=1;SPV=0.004369;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:53,9:28,1:25,8 +chrY 11175863 . GC G 0 PASS DP=95;GPV=1;SPV=0.042644;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:28,10:14,2 +chrY 11193832 . AGG A 0 PASS DP=87;GPV=1;SPV=0.019378;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:20,6:17,2 +chrY 11203339 . G A 0 PASS DP=114;GPV=1;SPV=0.035038;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:9,5:35,8 +chrY 11220150 . ATTT A 0 PASS DP=55;GPV=1;SPV=0.032993;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,11:9,5:11,6 +chrY 11223744 . G A 0 PASS DP=101;GPV=1;SPV=0.037331;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:23,10:23,3 +chrY 11236585 . A T 0 PASS DP=82;GPV=1;SPV=0.0029706;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:22,7:11,1 +chrY 11272437 . T C 0 PASS DP=54;GPV=1;SPV=0.048788;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:11,1:13,7 +chrY 11284353 . T C 0 PASS DP=444;GPV=1;SPV=0.038976;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:237:205,26:54,18:151,8 +chrY 11303581 . A G 0 PASS DP=27;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,3:1,2:0,1 +chrY 11347753 . T C 0 PASS DP=108;GPV=1;SPV=0.035943;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:29,6:23,5 +chrY 11565379 . T A 0 PASS DP=525;GPV=1;SPV=0.042965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:290:246,44:102,12:144,32 +chrY 11567195 . T A 0 PASS DP=233;GPV=1;SPV=0.017981;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:116,14:66,8:50,6 +chrY 11853987 . CT C 0 PASS DP=26;GPV=1;SPV=0.0015076;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,7:3,3 +chrY 13193942 . AAAT A 0 PASS DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:4,8:6,7 +chrY 15108020 . G A 0 PASS DP=27;GPV=1;SPV=7.4782e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,14:1,7:0,7 +chrY 15163095 . T C 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:3,4:0,3 +chrY 20122203 . G A 0 PASS DP=40;GPV=1;SPV=0.032417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:11,6:1,2 +chrY 20126331 . T A 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,8:5,2 +chrY 20137261 . C T 0 PASS DP=86;GPV=1;SPV=0.00020969;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:16,14:11,6 +chrY 20349541 . G A 0 PASS DP=58;GPV=1;SPV=0.23142;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:18,4:22,2 +chrY 26647432 . T A 0 PASS DP=295;GPV=1;SPV=0.017142;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:156,21:95,18:61,3 +chrY 26668102 . T G 0 PASS DP=51;GPV=1;SPV=0.085726;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:7,2:20,3 +chrY 26670121 . T A 0 PASS DP=1393;GPV=1;SPV=0.017933;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:791:697,94:407,45:290,49 +chrY 26672403 . G T 0 PASS DP=141;GPV=1;SPV=0.047949;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:31,10:26,4 +chrY 56677373 . G A 0 PASS DP=111;GPV=1;SPV=0.048559;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:1,1:47,5 +chrY 56745054 . A G 0 PASS DP=175;GPV=1;SPV=0.046999;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:87,12:53,7:34,5 +chrY 56767649 . G A 0 PASS DP=601;GPV=1;SPV=0.0014573;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:345:282,63:33,3:249,60 +chrY 56828396 . T G 0 PASS DP=148;GPV=1;SPV=0.042377;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:79,12:54,6:25,6 +chrY 56835356 . TATTCCACTCCACTCCACTCCAGTAC T 0 PASS DP=229;GPV=1;SPV=0.0064908;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:105,28:59,18:46,10 +chrY 56835388 . C T 0 PASS DP=212;GPV=1;SPV=0.0035919;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:88,28:47,21:41,7 +chrY 56852614 . T G 0 PASS DP=323;GPV=1;SPV=0.0091544;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:141,25:80,13:61,12 +chrY 56871315 . AT A 0 PASS DP=575;GPV=1;SPV=0.027352;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:269,41:132,19:137,22 +chrY 56878251 . G GCACACACACA 0 PASS DP=300;GPV=1;SPV=0.048489;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:136,26:76,16:60,10 +chrY 56879311 . T C 0 PASS DP=491;GPV=1;SPV=0.033825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:267:234,32:124,17:110,15
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/GH_levels.tab Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,2 @@ +G.vcf lung +H.vcf ovary
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/H.vcf Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,5750 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 101393 . T C 0 PASS DP=63;GPV=1;SPV=0.044769;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:25,2:5,7 +chr1 131552 . G T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr1 181481 . A AG 0 PASS DP=86;GPV=1;SPV=0.0027902;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:20,15:13,12:7,3 +chr1 202670 . C G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr1 288242 . G C 0 PASS DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2 +chr1 992992 . GA G 0 PASS DP=44;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,4:6,2:12,2 +chr1 992995 . G C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chr1 993003 . A C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2 +chr1 993004 . T C 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2 +chr1 1124108 . CACACACCTGCGCACACCACTGCAT C 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,7:6,1 +chr1 1146234 . C T 0 PASS DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:10,8:12,6 +chr1 1351361 . G C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr1 1641642 . T C 0 PASS DP=35;GPV=1;SPV=0.20263;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,1:8,4 +chr1 1985120 . A T 0 PASS DP=70;GPV=1;SPV=0.00046276;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:6,5:19,5 +chr1 2617426 . C CA 0 PASS DP=27;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:3,6:5,1 +chr1 2671975 . G A 0 PASS DP=321;GPV=1;SPV=0.026206;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:148,20:69,10:79,10 +chr1 2696836 . C G 0 PASS DP=32;GPV=1;SPV=0.0094843;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:8,5:1,6 +chr1 2845230 . A AACAAAAC 0 PASS DP=35;GPV=1;SPV=0.0016992;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:4,5:4,4 +chr1 3223178 . T C 0 PASS DP=41;GPV=1;SPV=0.00072552;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:6,7:4,11 +chr1 3868659 . GCCACA G 0 PASS DP=34;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,4:4,3 +chr1 4398515 . C CGTGTGTGTGT 0 PASS DP=43;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,4:4,3 +chr1 5631298 . C CAAAA 0 PASS DP=43;GPV=1;SPV=0.042767;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:10,6:9,1 +chr1 6275712 . G C 0 PASS DP=41;GPV=1;SPV=0.015395;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:15,4:2,3 +chr1 6570444 . C CA 0 PASS DP=41;GPV=1;SPV=0.02776;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:16,7:2,3 +chr1 7139230 . ATATATATT A 0 PASS DP=65;GPV=1;SPV=0.071412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,5:18,3:15,2 +chr1 7492741 . A ACGTG 0 PASS DP=41;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:8,4:7,3 +chr1 8121082 . GTGGCATGAACACTGATTT G 0 PASS DP=61;GPV=1;SPV=0.00018017;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5 +chr1 8239060 . CTT C 0 PASS DP=23;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,2:2,2 +chr1 8601626 . C CCACA 0 PASS DP=41;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,6:4,4:1,2 +chr1 8861880 . T TA 0 PASS DP=52;GPV=1;SPV=0.038543;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,13:13,6:10,7 +chr1 8901204 . T TTTTTA 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,1:14,3 +chr1 9099655 . G GGCCAGTGCAGATCTGCAAGTCAC 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr1 9379767 . GGAAAGAAAGAAAGAAAGAAAGAAA G 0 PASS DP=35;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:12,2:3,3 +chr1 9634149 . G T 0 PASS DP=35;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:8,3:2,1 +chr1 10199513 . A AG 0 PASS DP=36;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:7,4:11,1 +chr1 10228364 . A T 0 PASS DP=75;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:19,5:10,3:9,2 +chr1 10235862 . CA C 0 PASS DP=34;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:0,7:4,1 +chr1 10918938 . ATTT A 0 PASS DP=35;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,12:5,7:1,5 +chr1 10987386 . A AAGAAAGAAAG 0 PASS DP=57;GPV=1;SPV=0.0056131;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,8:9,2 +chr1 11854533 . G A 0 PASS DP=39;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:3,2:6,2 +chr1 12174172 . C T 0 PASS DP=51;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,6:7,1:19,5 +chr1 12888972 . A T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:2,1:5,8 +chr1 13149557 . G A 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr1 13169757 . C T 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1 +chr1 13701438 . A C 0 PASS DP=56;GPV=1;SPV=3.4807e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:10,9:7,6 +chr1 14133379 . AAG A 0 PASS DP=29;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:5,2:6,2 +chr1 14348051 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,13:2,9:4,4 +chr1 15580201 . C CTT 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr1 15595170 . T C 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4 +chr1 15971476 . A C 0 PASS DP=55;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:13,1:12,3 +chr1 16426583 . T A 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr1 16509814 . G T 0 PASS DP=223;GPV=1;SPV=0.0081452;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:26,8:74,10 +chr1 16547745 . G A 0 PASS DP=47;GPV=1;SPV=0.0026193;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,3:6,5 +chr1 16606288 . G C 0 PASS DP=311;GPV=1;SPV=0.0016457;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:141,34:81,12:60,22 +chr1 16622717 . C T 0 PASS DP=308;GPV=1;SPV=0.012902;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:153,24:73,16:80,8 +chr1 16624955 . A AAG 0 PASS DP=171;GPV=1;SPV=0.011056;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,14:33,5:42,9 +chr1 16633203 . G A 0 PASS DP=359;GPV=1;SPV=0.017651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:182,28:101,17:81,11 +chr1 16634406 . TGTGTGTGTGTGC T 0 PASS DP=213;GPV=1;SPV=0.011244;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:102,12:49,4:53,8 +chr1 16644389 . T C 0 PASS DP=389;GPV=1;SPV=0.02049;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:195,26:127,14:68,12 +chr1 16650688 . C T 0 PASS DP=271;GPV=1;SPV=0.014354;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:127,24:65,12:62,12 +chr1 16681062 . T C 0 PASS DP=152;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:78,11:45,5:33,6 +chr1 16694826 . G A 0 PASS DP=222;GPV=1;SPV=0.022123;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:46,11:57,10 +chr1 16698874 . T G 0 PASS DP=250;GPV=1;SPV=0.0018208;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:107,33:53,15:54,18 +chr1 16699684 . C G 0 PASS DP=280;GPV=1;SPV=0.046587;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:133,22:75,16:58,6 +chr1 16701595 . C T 0 PASS DP=272;GPV=1;SPV=0.049711;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:119,24:50,12:69,12 +chr1 16709200 . C T 0 PASS DP=251;GPV=1;SPV=0.00279;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:113,32:61,17:52,15 +chr1 16709246 . C T 0 PASS DP=240;GPV=1;SPV=0.039109;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:117,18:69,11:48,7 +chr1 16714068 . A G 0 PASS DP=264;GPV=1;SPV=0.047562;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:129,24:68,9:61,15 +chr1 16716376 . C T 0 PASS DP=80;GPV=1;SPV=0.030879;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,3:16,7 +chr1 16752059 . T C 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:20,4:1,0 +chr1 16760970 . G A 0 PASS DP=291;GPV=1;SPV=0.041885;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:129,21:72,9:57,12 +chr1 16874735 . CA C 0 PASS DP=135;GPV=1;SPV=0.013765;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:69,11:33,7:36,4 +chr1 16874979 . C T 0 PASS DP=393;GPV=1;SPV=0.040233;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:185,24:117,16:68,8 +chr1 17134599 . G GCACACA 0 PASS DP=56;GPV=1;SPV=0.043639;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:9,5:18,6 +chr1 17359299 . G A 0 PASS DP=66;GPV=1;SPV=1.0564e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,3:9,9 +chr1 18304726 . C T 0 PASS DP=60;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,3:17,2 +chr1 19132605 . T TAAAAAAA 0 PASS DP=34;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1 +chr1 19528188 . A G 0 PASS DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chr1 19653115 . G A 0 PASS DP=58;GPV=1;SPV=4.9593e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,24:9,17:2,7 +chr1 20815669 . G A 0 PASS DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:6,1:19,4 +chr1 20831279 . T A 0 PASS DP=63;GPV=1;SPV=0.016096;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:15,4:12,6 +chr1 21406937 . T C 0 PASS DP=48;GPV=1;SPV=0.2103;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2 +chr1 22336661 . C T 0 PASS DP=36;GPV=1;SPV=0.0038123;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:10,2:1,5 +chr1 22790608 . C A 0 PASS DP=67;GPV=1;SPV=0.00074026;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,7:15,3 +chr1 23256758 . C T 0 PASS DP=59;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,9:5,2:11,7 +chr1 23392474 . A AATAC 0 PASS DP=28;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:5,1:0,1 +chr1 23392494 . C T 0 PASS DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,1:0,2 +chr1 23484632 . C T 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,3:8,7 +chr1 24975159 . A AGACGGAAGGAAGGAAG 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2 +chr1 26552386 . CA C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,5:3,1 +chr1 27167737 . TC T 0 PASS DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,1:13,3 +chr1 29493274 . T A 0 PASS DP=68;GPV=1;SPV=0.00013472;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:13,9:14,9 +chr1 30780180 . C CTT 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:4,4:5,2 +chr1 31252104 . C T 0 PASS DP=59;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,5:13,1:11,4 +chr1 31252107 . A ACAAT 0 PASS DP=61;GPV=1;SPV=0.074163;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,4:15,1:12,3 +chr1 31270360 . C A 0 PASS DP=61;GPV=1;SPV=0.00071539;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,4:9,6 +chr1 31894583 . C CA 0 PASS DP=41;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3 +chr1 32094117 . C CT 0 PASS DP=26;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1 +chr1 33598665 . GT G 0 PASS DP=37;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:10,4:2,2 +chr1 33679199 . GT G 0 PASS DP=29;GPV=1;SPV=0.0022121;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,13:2,11:3,2 +chr1 33923868 . C T 0 PASS DP=63;GPV=1;SPV=0.0019889;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,6:16,4 +chr1 35800326 . C T 0 PASS DP=50;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,4:11,3:14,1 +chr1 36158141 . CA C 0 PASS DP=53;GPV=1;SPV=0.028132;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,1:7,4 +chr1 36403222 . TTA T 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,2:1,1:1,1 +chr1 36546905 . GAAAAAGAA G 0 PASS DP=41;GPV=1;SPV=0.28552;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,4:18,3:4,1 +chr1 37772399 . A AAT 0 PASS DP=29;GPV=1;SPV=0.00061022;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:2,6:4,4 +chr1 37963872 . T TAA 0 PASS DP=24;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:1,2:4,3 +chr1 39530887 . CA C 0 PASS DP=36;GPV=1;SPV=0.0016908;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:10,12:1,1 +chr1 40393541 . CT C 0 PASS DP=31;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:7,4:1,2 +chr1 40557103 . A G 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr1 41438047 . T TA 0 PASS DP=29;GPV=1;SPV=0.0011293;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:1,9:4,2 +chr1 42183978 . C G 0 PASS DP=66;GPV=1;SPV=0.00045819;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:7,7:11,11 +chr1 42214496 . C A 0 PASS DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:17,2:10,4 +chr1 42864327 . C CA 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,4:1,0 +chr1 43112481 . TTTTTTTTG T 0 PASS DP=29;GPV=1;SPV=0.009224;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,6:4,3 +chr1 43744652 . C CAATAAATAAATAAATAAATA 0 PASS DP=46;GPV=1;SPV=0.31126;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,4:20,1:10,3 +chr1 44259924 . C T 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1 +chr1 45223857 . T A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,1:8,3 +chr1 46177374 . T A 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3 +chr1 46855143 . G T 0 PASS DP=74;GPV=1;SPV=0.045774;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:18,5:17,3 +chr1 53037879 . TAC T 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3 +chr1 53136668 . T A 0 PASS DP=39;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,5:5,3:8,2 +chr1 53592384 . T A 0 PASS DP=75;GPV=1;SPV=0.022863;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:19,1:19,6 +chr1 54165021 . A C 0 PASS DP=55;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,3:2,2:2,1 +chr1 54382985 . C CA 0 PASS DP=43;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,5:12,4:9,1 +chr1 54411478 . G GA 0 PASS DP=40;GPV=1;SPV=0.0081016;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,12:3,7:8,5 +chr1 54663700 . A C 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2 +chr1 54691803 . A AGTGT 0 PASS DP=25;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,2:5,6 +chr1 54819812 . TTTTC T 0 PASS DP=30;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:0,0:11,4 +chr1 55480421 . T G 0 PASS DP=76;GPV=1;SPV=9.0495e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:7,9:15,9 +chr1 55910573 . ATAAGATGCATGTATT A 0 PASS DP=61;GPV=1;SPV=0.0013988;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:17,8:10,7 +chr1 56347475 . T C 0 PASS DP=54;GPV=1;SPV=0.0026904;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:10,5:11,4 +chr1 58266064 . G C 0 PASS DP=54;GPV=1;SPV=0.0066857;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,2:13,5 +chr1 58323924 . C CA 0 PASS DP=38;GPV=1;SPV=0.0075295;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:10,6:3,1 +chr1 60409766 . C T 0 PASS DP=36;GPV=1;SPV=0.17449;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,1:13,4 +chr1 60637754 . A AGAT 0 PASS DP=54;GPV=1;SPV=0.10815;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,6:17,4:13,2 +chr1 61059586 . G GT 0 PASS DP=37;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,12:5,9:6,3 +chr1 61432644 . C CACAT 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr1 61432652 . T C 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3 +chr1 63402460 . A AT 0 PASS DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1 +chr1 64239080 . G GGAA 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:7,1:1,4 +chr1 64268661 . C CAAA 0 PASS DP=48;GPV=1;SPV=0.018299;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,9:9,5:13,4 +chr1 65571808 . A T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,2:2,2 +chr1 67014670 . G GT 0 PASS DP=35;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:3,7:4,1 +chr1 67252804 . C CA 0 PASS DP=46;GPV=1;SPV=0.037022;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,8:10,7:8,1 +chr1 68745664 . C CTT 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1 +chr1 69094454 . C CTTTTTTTTTTT 0 PASS DP=51;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:7,8:11,3 +chr1 69942897 . G T 0 PASS DP=66;GPV=1;SPV=0.0040177;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,5:15,5 +chr1 73575232 . A T 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,6:8,2 +chr1 75266318 . T TACACACACAC 0 PASS DP=52;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,3:9,5 +chr1 75773098 . C A 0 PASS DP=59;GPV=1;SPV=1.5927e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,6:4,5 +chr1 75836453 . C A 0 PASS DP=68;GPV=1;SPV=0.0005577;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,5:13,6 +chr1 78797746 . C CT 0 PASS DP=52;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,9:4,4 +chr1 79104840 . C T 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,1:19,4 +chr1 79281755 . T C 0 PASS DP=80;GPV=1;SPV=4.0494e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:10,8:13,6 +chr1 79784600 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,3:4,1 +chr1 80496447 . CA C 0 PASS DP=70;GPV=1;SPV=0.04376;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:20,3:16,3 +chr1 81777283 . T C 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2 +chr1 82736650 . T C 0 PASS DP=31;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,12:2,4:6,8 +chr1 83390878 . A G 0 PASS DP=73;GPV=1;SPV=0.045034;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:16,2:16,8 +chr1 84993619 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr1 84993787 . C A 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1 +chr1 84993795 . T C 0 PASS DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:13,3:22,2 +chr1 86216519 . G T 0 PASS DP=33;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,3:6,1 +chr1 86445356 . C CTTT 0 PASS DP=29;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,4:7,4 +chr1 87832685 . ATGTGTG A 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,3:3,1 +chr1 89312748 . C A 0 PASS DP=74;GPV=1;SPV=0.00013643;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:14,6:10,9 +chr1 89379349 . G T 0 PASS DP=78;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:40:1,3:1,2:0,1 +chr1 89450419 . A G 0 PASS DP=64;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,4:10,2:18,2 +chr1 90643880 . T TTCTTTC 0 PASS DP=42;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:11,2:10,4 +chr1 91212539 . T G 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr1 91991991 . CA C 0 PASS DP=31;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:7,11:1,1 +chr1 92395635 . CAA C 0 PASS DP=35;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:4,7:6,3 +chr1 93381633 . A T 0 PASS DP=56;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,4:4,2:8,2 +chr1 93753543 . TACAC T 0 PASS DP=41;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,6:3,4 +chr1 93920959 . T A 0 PASS DP=63;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:3,2:3,1:0,1 +chr1 94538288 . G A 0 PASS DP=63;GPV=1;SPV=8.7596e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:12,11:11,6 +chr1 95033400 . TAC T 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,1:12,3 +chr1 95569922 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,2:4,2 +chr1 95942371 . T A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,8:8,4 +chr1 96265847 . T TAA 0 PASS DP=75;GPV=1;SPV=0.015722;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,4:15,5 +chr1 96265872 . T TAA 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:15,3:18,3 +chr1 96265897 . T TA 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,1:18,3 +chr1 98202738 . C G 0 PASS DP=52;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,6:8,3:9,3 +chr1 98219836 . G GTCTA 0 PASS DP=50;GPV=1;SPV=0.00021044;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:9,6:1,5 +chr1 98277222 . T C 0 PASS DP=64;GPV=1;SPV=8.6637e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,6:8,4 +chr1 99087969 . A G 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,2:7,3 +chr1 99088005 . GGAAGGAAA G 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr1 100757864 . G GTTTT 0 PASS DP=30;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:5,4:6,1 +chr1 101132132 . CATAT C 0 PASS DP=57;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,4:10,2:9,2 +chr1 101242014 . T G 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1 +chr1 101629378 . G A 0 PASS DP=41;GPV=1;SPV=0.017056;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,4:8,3 +chr1 102336800 . A T 0 PASS DP=62;GPV=1;SPV=0.0071577;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:8,3:10,7 +chr1 102336801 . T A 0 PASS DP=63;GPV=1;SPV=0.0027895;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,3:11,7 +chr1 102774230 . A ACG 0 PASS DP=39;GPV=1;SPV=0.16084;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,3:7,2 +chr1 103296396 . T A 0 PASS DP=50;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2 +chr1 103296399 . CT C 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr1 103361403 . C CAA 0 PASS DP=37;GPV=1;SPV=0.0018037;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,7:3,2 +chr1 103903581 . T A 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr1 104507984 . G C 0 PASS DP=27;GPV=1;SPV=0.0028145;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,4:2,2 +chr1 108180627 . T C 0 PASS DP=42;GPV=1;SPV=0.0063215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,6:5,1 +chr1 108765591 . T TTTTTC 0 PASS DP=47;GPV=1;SPV=0.051628;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,10:10,2:8,8 +chr1 108956882 . A G 0 PASS DP=19;GPV=1;SPV=0.096154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:4,3:0,0 +chr1 109799145 . G T 0 PASS DP=61;GPV=1;SPV=0.0004629;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,7:10,4 +chr1 109865700 . C G 0 PASS DP=66;GPV=1;SPV=0.021438;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,5:11,1 +chr1 110680507 . GTTT G 0 PASS DP=27;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:2,2:6,2 +chr1 110710259 . G GA 0 PASS DP=40;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:8,8:5,3 +chr1 111010823 . A C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1 +chr1 112670362 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,7:2,1 +chr1 113070496 . G A 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr1 114713908 . T C 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,4:5,5 +chr1 116631317 . CA C 0 PASS DP=38;GPV=1;SPV=0.0023627;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,7:2,2 +chr1 116787614 . T A 0 PASS DP=68;GPV=1;SPV=0.00027215;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:9,6:15,5 +chr1 116936521 . T G 0 PASS DP=69;GPV=1;SPV=0.0018869;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,4:12,3 +chr1 117804204 . G A 0 PASS DP=31;GPV=1;SPV=0.022967;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,4:2,3 +chr1 119093474 . A ATACTAGATTATAGTGGGCTC 0 PASS DP=47;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,6:9,6 +chr1 120388912 . C T 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,2:17,2 +chr1 120651747 . TTATATATATATA T 0 PASS DP=30;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:8,2:7,2 +chr1 120667417 . C T 0 PASS DP=32;GPV=1;SPV=0.29549;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,2:14,2 +chr1 120751114 . T G 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:0,2:5,6 +chr1 120875225 . C T 0 PASS DP=63;GPV=1;SPV=0.0054352;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:17,13:10,4 +chr1 120894049 . T C 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,1:18,3 +chr1 121106049 . A G 0 PASS DP=81;GPV=1;SPV=0.041446;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:18,8:18,2 +chr1 121261263 . C T 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr1 121540803 . GTTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr1 121683492 . T A 0 PASS DP=71;GPV=1;SPV=0.01255;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:11,10:19,5 +chr1 121817841 . C A 0 PASS DP=83;GPV=1;SPV=0.0047429;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,16:21,11:13,5 +chr1 121818090 . G A 0 PASS DP=55;GPV=1;SPV=0.015065;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:13,7:7,5 +chr1 121841329 . T C 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4 +chr1 122073628 . C T 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 122130689 . C T 0 PASS DP=119;GPV=1;SPV=0.034173;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:9,4:39,10 +chr1 122140191 . G A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr1 122211581 . C A 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,3:3,2 +chr1 122777707 . A C 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0 +chr1 122777712 . G C 0 PASS DP=63;GPV=1;SPV=0.15343;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:36,4:0,0 +chr1 123438511 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 123674920 . T C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr1 124805293 . C A 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr1 124805315 . T A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1 +chr1 124816173 . A C 0 PASS DP=46;GPV=1;SPV=0.019316;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3 +chr1 124829525 . C T 0 PASS DP=84;GPV=1;SPV=0.010211;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:27,10:3,2 +chr1 124847703 . G C 0 PASS DP=41;GPV=1;SPV=0.40407;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,1:17,3 +chr1 124864436 . A G 0 PASS DP=139;GPV=1;SPV=0.015835;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:60,15:57,14:3,1 +chr1 124886925 . C A 0 PASS DP=202;GPV=1;SPV=0.0073143;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:91,14:55,11:36,3 +chr1 124904278 . C T 0 PASS DP=68;GPV=1;SPV=0.047927;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:2,2:34,4 +chr1 124937130 . T C 0 PASS DP=105;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:29,7:24,1 +chr1 143217372 . G A 0 PASS DP=12153;GPV=1;SPV=7.3112e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6716:5967,679:2289,208:3678,471 +chr1 143219159 . T G 0 PASS DP=6082;GPV=1;SPV=0.0015091;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:3598:3201,394:848,79:2353,315 +chr1 143221432 . C G 0 PASS DP=2929;GPV=1;SPV=0.0058024;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1839:1627,206:612,25:1015,181 +chr1 143238836 . A G 0 PASS DP=624;GPV=1;SPV=0.012636;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:379:312,39:185,33:127,6 +chr1 143286130 . T TA 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:1,1:11,3 +chr1 143286145 . G T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,1:10,3 +chr1 143341813 . TA T 0 PASS DP=56;GPV=1;SPV=0.032618;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,2:6,4 +chr1 143548981 . G C 0 PASS DP=48;GPV=1;SPV=0.0018005;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,4:11,9 +chr1 143712484 . G A 0 PASS DP=52;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,4:3,2:2,2 +chr1 144105070 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr1 144139172 . GTCATT G 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:15,4:0,1 +chr1 144140974 . CTCATCTCATT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr1 144809977 . A G 0 PASS DP=22;GPV=1;SPV=0.036364;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr1 144826218 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1 +chr1 144979925 . A G 0 PASS DP=79;GPV=1;SPV=0.053176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:27,1:19,6 +chr1 145216558 . T TA 0 PASS DP=86;GPV=1;SPV=0.06166;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:30,3:19,3 +chr1 145259609 . G A 0 PASS DP=84;GPV=1;SPV=0.018299;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,8:14,5 +chr1 145459639 . C T 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:6,2:21,2 +chr1 145509861 . GC G 0 PASS DP=42;GPV=1;SPV=0.03376;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,5:7,1 +chr1 145509867 . T G 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,5:7,1 +chr1 146132649 . G C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr1 146367117 . C CAAATAAAT 0 PASS DP=24;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,1:5,3 +chr1 146471895 . T A 0 PASS DP=54;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,2:4,1:2,1 +chr1 146814489 . A G 0 PASS DP=41;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,3:4,6 +chr1 146822050 . G A 0 PASS DP=46;GPV=1;SPV=0.028846;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,7:0,5:4,2 +chr1 146898337 . GA G 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr1 146978456 . G T 0 PASS DP=50;GPV=1;SPV=0.095044;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:11,4:16,1 +chr1 147059346 . GAGAA G 0 PASS DP=51;GPV=1;SPV=0.0066512;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,8:7,4 +chr1 147314778 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0078195;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,10:5,3 +chr1 147820458 . C A 0 PASS DP=76;GPV=1;SPV=2.3888e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:16,12:9,9 +chr1 148102043 . A G 0 PASS DP=81;GPV=1;SPV=0.033201;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:9,1:28,4 +chr1 148109008 . A T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:7,2:21,2 +chr1 148471265 . T TACACAC 0 PASS DP=58;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,4:15,2:11,2 +chr1 148631544 . G A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,1:5,3 +chr1 148950409 . T A 0 PASS DP=94;GPV=1;SPV=0.015249;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:56,12:21,5:35,7 +chr1 149080154 . C G 0 PASS DP=109;GPV=1;SPV=0.0068761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:11,2:31,14 +chr1 149370784 . CA C 0 PASS DP=52;GPV=1;SPV=0.0091476;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,7:7,5:8,2 +chr1 149564326 . G A 0 PASS DP=36;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,2:7,5 +chr1 149653495 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1 +chr1 149676655 . C T 0 PASS DP=74;GPV=1;SPV=0.01473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,9:14,1 +chr1 149709540 . T C 0 PASS DP=80;GPV=1;SPV=0.0021542;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:14,6:15,8 +chr1 150023512 . T G 0 PASS DP=69;GPV=1;SPV=1.1624e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:10,9:12,7 +chr1 150260751 . G GAT 0 PASS DP=27;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:1,3:4,2 +chr1 150879491 . T TA 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr1 150898932 . AT A 0 PASS DP=48;GPV=1;SPV=0.099229;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4 +chr1 150898935 . T A 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,1:7,4 +chr1 151148183 . A T 0 PASS DP=68;GPV=1;SPV=0.0021064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,6:12,6 +chr1 151600630 . G A 0 PASS DP=51;GPV=1;SPV=0.0369;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:8,1:18,6 +chr1 151725107 . C CT 0 PASS DP=25;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:1,5:3,1 +chr1 151758506 . AAG A 0 PASS DP=47;GPV=1;SPV=0.039385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:5,6:16,6 +chr1 151758508 . G A 0 PASS DP=40;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:3,1:14,4 +chr1 152289480 . C T 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2 +chr1 152774068 . A C 0 PASS DP=68;GPV=1;SPV=4.1835e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,9:11,6 +chr1 153169283 . G C 0 PASS DP=71;GPV=1;SPV=0.00014469;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:9,5:16,7 +chr1 153709363 . C T 0 PASS DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,7:7,6 +chr1 155204585 . C CA 0 PASS DP=44;GPV=1;SPV=0.040363;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,8:12,3 +chr1 155517793 . CTTTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr1 155617244 . C CAGGCTCATGGAGGTTCCTGTCTGGGGT 0 PASS DP=62;GPV=1;SPV=0.031538;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,2:9,6 +chr1 155858636 . G GT 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,3:6,1 +chr1 156292376 . AGTGTGTGTGTGTGT A 0 PASS DP=46;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,7:7,4 +chr1 157165238 . A T 0 PASS DP=60;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,4:1,1:2,3 +chr1 157340218 . G GT 0 PASS DP=27;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:3,4:4,1 +chr1 157665600 . C CTCTT 0 PASS DP=49;GPV=1;SPV=0.0033296;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:4,3:12,4 +chr1 157984180 . TC T 0 PASS DP=47;GPV=1;SPV=0.22942;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,2:17,2 +chr1 159957140 . C CAA 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,4:0,3:0,1 +chr1 160318480 . AAAAAAAAAAAAC A 0 PASS DP=35;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:6,4:6,5 +chr1 160828888 . G A 0 PASS DP=30;GPV=1;SPV=0.14559;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,5:9,1:3,4 +chr1 161055918 . A ATAT 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,4:4,2 +chr1 161055927 . A T 0 PASS DP=40;GPV=1;SPV=0.059981;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,4:8,2 +chr1 161055929 . AT A 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,4:8,2 +chr1 161055935 . T TATA 0 PASS DP=40;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,7:6,2 +chr1 161187944 . C CT 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1 +chr1 161423322 . TG T 0 PASS DP=37;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,7:7,1 +chr1 161558554 . G T 0 PASS DP=79;GPV=1;SPV=0.025171;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:19,2:13,11 +chr1 162124506 . TG T 0 PASS DP=66;GPV=1;SPV=0.1916;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:25,3:18,2 +chr1 162485998 . A AT 0 PASS DP=44;GPV=1;SPV=0.024807;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,6:8,3 +chr1 164978035 . C CA 0 PASS DP=25;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,5:1,1 +chr1 165103400 . C T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:2,1:5,7 +chr1 165350173 . CA C 0 PASS DP=33;GPV=1;SPV=0.0015905;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,9:1,8:1,1 +chr1 165596298 . ATT A 0 PASS DP=29;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:14,4:0,2 +chr1 166203242 . G GCT 0 PASS DP=39;GPV=1;SPV=0.037811;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8 +chr1 167801285 . C CT 0 PASS DP=42;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:8,6:6,6 +chr1 168158595 . TA T 0 PASS DP=34;GPV=1;SPV=0.0047847;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:1,3:3,2 +chr1 169478523 . ATT A 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,2:7,5 +chr1 169490735 . CA C 0 PASS DP=30;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:9,5:1,1 +chr1 170244419 . A T 0 PASS DP=74;GPV=1;SPV=3.308e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,7:13,7 +chr1 174833402 . A G 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2 +chr1 175030281 . T C 0 PASS DP=72;GPV=1;SPV=0.0001697;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,8:14,5 +chr1 176454837 . C A 0 PASS DP=51;GPV=1;SPV=0.0017779;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,5:11,6 +chr1 178695649 . T TA 0 PASS DP=61;GPV=1;SPV=0.027239;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,9:11,4:8,5 +chr1 179040690 . C T 0 PASS DP=38;GPV=1;SPV=0.0064207;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:11,3:4,9 +chr1 179287327 . T TAGAAAGAAAGAA 0 PASS DP=39;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:6,7:3,1 +chr1 180287409 . CA C 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2 +chr1 180514584 . GA G 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1 +chr1 180680357 . CT C 0 PASS DP=36;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,2:7,4 +chr1 181210081 . T G 0 PASS DP=64;GPV=1;SPV=0.0011498;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:15,6:11,5 +chr1 181893628 . A AGT 0 PASS DP=50;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,11:8,6:2,5 +chr1 182174861 . CTT C 0 PASS DP=28;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,8:0,6:2,2 +chr1 182868520 . C CTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr1 182977144 . C CAA 0 PASS DP=39;GPV=1;SPV=0.018873;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr1 183229635 . C CAA 0 PASS DP=43;GPV=1;SPV=0.13206;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:17,5:7,1 +chr1 184414221 . C T 0 PASS DP=81;GPV=1;SPV=0.00037035;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:16,7:19,7 +chr1 185225693 . A G 0 PASS DP=73;GPV=1;SPV=0.033417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,2:15,3 +chr1 186263030 . CATAATAATA C 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:12,3:1,3 +chr1 186750129 . G T 0 PASS DP=73;GPV=1;SPV=0.00016884;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:7,6:18,5 +chr1 187827169 . G GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA 0 PASS DP=34;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,10:8,7:3,3 +chr1 191414328 . T C 0 PASS DP=78;GPV=1;SPV=0.035498;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:16,2:20,3 +chr1 194082117 . C G 0 PASS DP=71;GPV=1;SPV=0.014019;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:15,5:18,2 +chr1 194151542 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:4,7:4,3 +chr1 194743209 . C CT 0 PASS DP=38;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,1:10,5 +chr1 194978296 . T G 0 PASS DP=81;GPV=1;SPV=0.00059684;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:11,6:20,4 +chr1 195243063 . G T 0 PASS DP=64;GPV=1;SPV=3.4904e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,8:13,7 +chr1 196714701 . A G 0 PASS DP=19;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,5:0,1 +chr1 196903286 . G T 0 PASS DP=61;GPV=1;SPV=0.00035641;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:13,5:11,10 +chr1 199886021 . G A 0 PASS DP=45;GPV=1;SPV=0.0002204;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:7,7:4,10 +chr1 199912436 . C A 0 PASS DP=36;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:11,1:5,3 +chr1 200014606 . T A 0 PASS DP=73;GPV=1;SPV=4.3618e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:10,10:16,5 +chr1 200094182 . G T 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,2:14,3 +chr1 200587301 . C T 0 PASS DP=48;GPV=1;SPV=0.0041401;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,4:9,4 +chr1 200689150 . C G 0 PASS DP=45;GPV=1;SPV=0.014419;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:5,2:15,6 +chr1 201269186 . T C 0 PASS DP=75;GPV=1;SPV=0.00099051;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,4:14,5 +chr1 202231821 . G A 0 PASS DP=66;GPV=1;SPV=0.0069077;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,5:14,2 +chr1 202986372 . CAAAA C 0 PASS DP=41;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:7,5:5,1 +chr1 203973992 . A G 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2 +chr1 204597995 . GT G 0 PASS DP=32;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,2:6,2 +chr1 204754578 . T C 0 PASS DP=45;GPV=1;SPV=0.0035259;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,5:7,4 +chr1 205538068 . G T 0 PASS DP=62;GPV=1;SPV=0.0045484;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,7:12,4 +chr1 207359516 . C CT 0 PASS DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,10:1,7:4,3 +chr1 207515162 . CATATATAGGTATATACATATAT C 0 PASS DP=63;GPV=1;SPV=0.039984;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:18,5:8,5 +chr1 207617598 . TATATATATATATATAGAGAGAGAGAGAGAGAGAGAG T 0 PASS DP=30;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2 +chr1 207796695 . C T 0 PASS DP=52;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,4:9,1:11,3 +chr1 209075904 . A C 0 PASS DP=32;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,4:0,4:0,0 +chr1 210450294 . T TG 0 PASS DP=39;GPV=1;SPV=0.0048875;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5 +chr1 210502383 . C CAAAA 0 PASS DP=34;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,5:3,3:3,2 +chr1 211462755 . A G 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,5:11,3 +chr1 211700176 . A AGAAG 0 PASS DP=46;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,6:4,4:9,2 +chr1 212235662 . A T 0 PASS DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4 +chr1 212253698 . C CAA 0 PASS DP=46;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:9,7:6,1 +chr1 212891303 . TTGGGAGGCTGAGGCAGAAGAATTGCTTGAATC T 0 PASS DP=53;GPV=1;SPV=0.0095284;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:7,4:12,5 +chr1 213702553 . T A 0 PASS DP=68;GPV=1;SPV=0.0013541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:12,8:19,6 +chr1 213798182 . G T 0 PASS DP=69;GPV=1;SPV=0.0091975;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:14,5:18,3 +chr1 214569915 . TGATAGATA T 0 PASS DP=31;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:1,4:0,0:1,4 +chr1 214869483 . C T 0 PASS DP=34;GPV=1;SPV=0.29596;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:12,1:8,2 +chr1 214988039 . A AT 0 PASS DP=43;GPV=1;SPV=0.020315;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,10:5,3:8,7 +chr1 215037002 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0043848;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,6:10,4 +chr1 215510953 . C G 0 PASS DP=67;GPV=1;SPV=0.00032467;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,6:12,5 +chr1 215740118 . T C 0 PASS DP=61;GPV=1;SPV=8.0199e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:5,5:12,10 +chr1 216586581 . C CT 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,2:3,2 +chr1 216658848 . AAGAAGAGAAGAGAAG A 0 PASS DP=41;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:5,3:7,4 +chr1 217611387 . GCTTCA G 0 PASS DP=76;GPV=1;SPV=0.00024118;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:17,15:6,8 +chr1 218026763 . A AT 0 PASS DP=39;GPV=1;SPV=0.001482;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,11:3,9:4,2 +chr1 218643556 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,5:3,5 +chr1 219698217 . TCGCGCGCG T 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,2:0,2:0,0 +chr1 219942272 . C G 0 PASS DP=65;GPV=1;SPV=0.065183;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,4:12,3 +chr1 221173349 . G T 0 PASS DP=37;GPV=1;SPV=0.0079853;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,2:5,4 +chr1 221545261 . A G 0 PASS DP=73;GPV=1;SPV=1.4407e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:10,8:15,9 +chr1 221877823 . G T 0 PASS DP=42;GPV=1;SPV=0.010459;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,4:7,3 +chr1 222175243 . G GTTTATTTATTTA 0 PASS DP=58;GPV=1;SPV=0.035881;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,8:15,2 +chr1 222464470 . G A 0 PASS DP=43;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:12,2:11,3 +chr1 222492235 . C A 0 PASS DP=63;GPV=1;SPV=0.0099688;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,5:13,3 +chr1 223937919 . C T 0 PASS DP=35;GPV=1;SPV=0.0070449;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,6:6,4 +chr1 224588968 . G GTTTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:11,3:6,1 +chr1 224735880 . G T 0 PASS DP=72;GPV=1;SPV=2.0437e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,6:14,8 +chr1 226176429 . C CA 0 PASS DP=31;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,2:4,2 +chr1 227457651 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,10:3,5:3,5 +chr1 229060485 . G A 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:12,1:20,4 +chr1 230640922 . G A 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:5,7:5,3 +chr1 230768045 . T TA 0 PASS DP=46;GPV=1;SPV=0.17137;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:13,1:8,3 +chr1 231024914 . C CT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1 +chr1 231045947 . G A 0 PASS DP=28;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:0,1:1,1 +chr1 231532131 . AACACACACACACACACACACACACACAC A 0 PASS DP=29;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:4,4:3,5 +chr1 231615387 . TTC T 0 PASS DP=43;GPV=1;SPV=0.038146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,4:8,4 +chr1 232386566 . C T 0 PASS DP=76;GPV=1;SPV=0.00036492;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:9,6:18,4 +chr1 233318563 . C CTTTTTCTT 0 PASS DP=23;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr1 234779794 . C T 0 PASS DP=286;GPV=1;SPV=0.036448;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:133,24:70,13:63,11 +chr1 235452548 . T C 0 PASS DP=49;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:4,1:3,1 +chr1 235619159 . T A 0 PASS DP=26;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,2:5,2 +chr1 235877855 . C CAA 0 PASS DP=39;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:10,4:7,2 +chr1 236094275 . C CT 0 PASS DP=22;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:5,5:1,1 +chr1 237070031 . C CTT 0 PASS DP=40;GPV=1;SPV=0.022366;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,7:5,2 +chr1 237623359 . G GTTTCTTTCTTTCTTTGTTTGTTTC 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr1 240993117 . A G 0 PASS DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:12,4:0,0 +chr1 242394382 . G GTA 0 PASS DP=50;GPV=1;SPV=0.0011874;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:6,7:12,4 +chr1 242421072 . C T 0 PASS DP=50;GPV=1;SPV=0.033818;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,5:10,3 +chr1 242795319 . T TTGTGTGTGTGTG 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,1:5,8 +chr1 242807126 . CA C 0 PASS DP=37;GPV=1;SPV=0.0053235;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,5:7,1 +chr1 242945390 . CA C 0 PASS DP=24;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:6,4:0,0 +chr1 243108698 . C CTT 0 PASS DP=29;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,3:2,5 +chr1 243422206 . C A 0 PASS DP=66;GPV=1;SPV=2.5999e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,10:13,6 +chr1 243910533 . G C 0 PASS DP=65;GPV=1;SPV=0.014788;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:13,3:17,4 +chr1 244357228 . T TTACTTTCTAATGAGGGCAGGG 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,1:6,9 +chr1 244664020 . G GA 0 PASS DP=36;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:6,6:4,1 +chr1 244962517 . T A 0 PASS DP=69;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,4:16,2:9,2 +chr1 245244756 . T TCACACA 0 PASS DP=45;GPV=1;SPV=0.0026087;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,14:4,10:1,4 +chr1 245408349 . CTT C 0 PASS DP=38;GPV=1;SPV=0.070365;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,3:9,4 +chr1 246137147 . A T 0 PASS DP=57;GPV=1;SPV=7.0323e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:7,8:8,7 +chr1 246233552 . A T 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2 +chr1 246276021 . G GT 0 PASS DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,2:13,7 +chr1 246546312 . T TAAAAAAAGAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:8,7:7,1 +chr1 247170154 . G A 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1 +chr1 248445024 . CTT C 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,1:11,3 +chr1 248474970 . T C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,3:11,1 +chr1 248553696 . G T 0 PASS DP=82;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:11,4:5,2:6,2 +chr1 248566888 . G A 0 PASS DP=55;GPV=1;SPV=0.024262;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,4:12,5 +chr1 248646853 . TATAA T 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:16,3:3,2 +chr1 248933423 . C A 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:23,1:12,3 +chr10 39740 . G C 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4 +chr10 264916 . G A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr10 384271 . CT C 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:8,4:2,3 +chr10 1987672 . A G 0 PASS DP=46;GPV=1;SPV=0.10396;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,2:16,3 +chr10 2164519 . T TA 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,6:4,4 +chr10 2252824 . T G 0 PASS DP=67;GPV=1;SPV=0.0003089;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:7,6:18,6 +chr10 2354136 . CATAT C 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,3:7,4 +chr10 2423901 . T C 0 PASS DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:4,5:11,8 +chr10 3062566 . T A 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,2:4,6 +chr10 3597990 . C T 0 PASS DP=37;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,6:0,4:6,2 +chr10 5842915 . C CAAAT 0 PASS DP=56;GPV=1;SPV=0.011265;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,7:11,3 +chr10 5957593 . C CTT 0 PASS DP=31;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:4,4:4,1 +chr10 6302379 . T G 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1 +chr10 6960037 . A T 0 PASS DP=65;GPV=1;SPV=0.00024732;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,4:13,10 +chr10 7228730 . TCTTTCCTTTC T 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:9,3:9,1 +chr10 7634088 . C CAAAA 0 PASS DP=38;GPV=1;SPV=0.011294;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,6:5,1 +chr10 7988572 . C CA 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1 +chr10 8268931 . T TA 0 PASS DP=33;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:3,4:6,2 +chr10 8268957 . T G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr10 8471423 . G GTT 0 PASS DP=45;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,7:3,5:8,2 +chr10 8536317 . C A 0 PASS DP=51;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,4:17,1:5,3 +chr10 11628933 . CT C 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:10,3:2,1 +chr10 12056448 . A ATTTTT 0 PASS DP=29;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,3:5,2 +chr10 13136505 . C CAAAA 0 PASS DP=32;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:9,3:3,1 +chr10 13290115 . CAA C 0 PASS DP=26;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,7:1,1 +chr10 13750073 . A G 0 PASS DP=44;GPV=1;SPV=0.14038;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:19,6:8,1 +chr10 13884103 . A AAC 0 PASS DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,8:8,2 +chr10 15037580 . C CAAAAAAAAAAAA 0 PASS DP=45;GPV=1;SPV=0.029599;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:8,6:13,2 +chr10 15135203 . T G 0 PASS DP=55;GPV=1;SPV=0.031709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:15,4:14,4 +chr10 15749660 . C CTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,2:5,3 +chr10 15827176 . TA T 0 PASS DP=31;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:5,8:3,2 +chr10 16955374 . CAAAAA C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr10 17379320 . A AGAAGAGGAGAGGG 0 PASS DP=50;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:15,8:3,2 +chr10 17474821 . G GT 0 PASS DP=36;GPV=1;SPV=0.0054674;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:5,9:6,1 +chr10 17762616 . T C 0 PASS DP=34;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,3:1,2:4,1 +chr10 18499807 . A C 0 PASS DP=57;GPV=1;SPV=0.04473;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,3:14,3 +chr10 19238757 . T C 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,5:2,3 +chr10 20333222 . C A 0 PASS DP=48;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,5:3,4:12,1 +chr10 20348042 . CCA C 0 PASS DP=38;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,10:5,5:0,5 +chr10 21382464 . CTT C 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,9:6,2 +chr10 22197222 . C CT 0 PASS DP=43;GPV=1;SPV=0.029097;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,12:11,8:6,4 +chr10 22198049 . A T 0 PASS DP=35;GPV=1;SPV=0.025362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,4:5,3 +chr10 23134573 . G GAA 0 PASS DP=34;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:6,3:10,1 +chr10 23817962 . CAT C 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,2:2,2 +chr10 25241316 . C T 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,1:12,3 +chr10 25450826 . T A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,5:12,5 +chr10 26333448 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,4:4,1 +chr10 26432529 . A AAAAATAAAAT 0 PASS DP=33;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:1,4:7,3 +chr10 27442949 . ATATACATG A 0 PASS DP=48;GPV=1;SPV=0.021198;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,6:9,1 +chr10 27442960 . T C 0 PASS DP=50;GPV=1;SPV=0.014495;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,7:10,6:9,1 +chr10 28460077 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,2:3,4 +chr10 28541417 . T G 0 PASS DP=28;GPV=1;SPV=0.091949;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,6:7,1 +chr10 28541419 . TG T 0 PASS DP=32;GPV=1;SPV=0.083772;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:7,3:8,4 +chr10 29003220 . AT A 0 PASS DP=46;GPV=1;SPV=0.0025933;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:7,6:11,5 +chr10 29003240 . TTA T 0 PASS DP=42;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:8,4:9,4 +chr10 29003243 . T A 0 PASS DP=39;GPV=1;SPV=0.031702;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:6,4:9,3 +chr10 29702175 . C CAA 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,2:3,2 +chr10 30037934 . T TAAA 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,5:5,4 +chr10 30230380 . G GT 0 PASS DP=20;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:3,5:0,2 +chr10 30349279 . T TA 0 PASS DP=32;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1 +chr10 30431035 . T A 0 PASS DP=56;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,4:16,3 +chr10 30431036 . C G 0 PASS DP=58;GPV=1;SPV=0.025513;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,5:16,3 +chr10 30611566 . G A 0 PASS DP=35;GPV=1;SPV=0.016716;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,5:3,1 +chr10 30626969 . C T 0 PASS DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3 +chr10 30650858 . C CAAATAAATAAAT 0 PASS DP=42;GPV=1;SPV=0.00021441;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,11:0,4:5,7 +chr10 30661198 . C CT 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,3:7,7 +chr10 30739448 . AAG A 0 PASS DP=49;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,10:15,7:1,3 +chr10 31675541 . G T 0 PASS DP=71;GPV=1;SPV=0.0022464;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:17,6:15,5 +chr10 31980130 . TAGATAGGA T 0 PASS DP=52;GPV=1;SPV=0.0035849;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:11,5:5,9 +chr10 32649442 . C A 0 PASS DP=61;GPV=1;SPV=1.6015e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:11,6:8,11 +chr10 33837987 . G C 0 PASS DP=68;GPV=1;SPV=0.001508;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,7:18,4 +chr10 33842853 . A C 0 PASS DP=43;GPV=1;SPV=0.040465;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,8:10,3:8,5 +chr10 33864862 . TCA T 0 PASS DP=49;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,11:10,9:2,2 +chr10 35861759 . C G 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,8:7,5 +chr10 37214540 . G GTA 0 PASS DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,4:7,6 +chr10 37961857 . G A 0 PASS DP=43;GPV=1;SPV=0.0036228;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:12,6:4,12 +chr10 38623792 . C CA 0 PASS DP=81;GPV=1;SPV=0.01031;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:22,5:13,5 +chr10 38646573 . T A 0 PASS DP=168;GPV=1;SPV=0.042626;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:74,16:40,8:34,8 +chr10 38655361 . AG A 0 PASS DP=112;GPV=1;SPV=0.0077239;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:15,4:29,12 +chr10 38719714 . C T 0 PASS DP=65;GPV=1;SPV=0.052773;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,4:13,1 +chr10 38886532 . A T 0 PASS DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,6:9,1 +chr10 38961421 . G A 0 PASS DP=144;GPV=1;SPV=0.027722;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:35,4:28,5 +chr10 39160804 . G T 0 PASS DP=81;GPV=1;SPV=0.0014612;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:17,6:23,9 +chr10 39468920 . A G 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1 +chr10 39576813 . C T 0 PASS DP=200;GPV=1;SPV=0.044303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:54,11:46,9 +chr10 39999510 . T C 0 PASS DP=220;GPV=1;SPV=0.013792;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:113,13:66,4:47,9 +chr10 40412289 . T G 0 PASS DP=203;GPV=1;SPV=0.019829;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:60,7:37,14 +chr10 40483815 . T C 0 PASS DP=67;GPV=1;SPV=0.04926;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:30,10:0,1 +chr10 40545213 . A G 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,5:15,1 +chr10 40586508 . G T 0 PASS DP=88;GPV=1;SPV=0.011161;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:4,2:33,15 +chr10 40593167 . T TG 0 PASS DP=65;GPV=1;SPV=0.11654;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:13,1:25,4 +chr10 40595283 . T G 0 PASS DP=91;GPV=1;SPV=0.013497;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:34,11:5,1 +chr10 40607366 . C G 0 PASS DP=239;GPV=1;SPV=0.025414;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:116,25:98,23:18,2 +chr10 41175698 . G A 0 PASS DP=73;GPV=1;SPV=0.014021;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:5,4:27,6 +chr10 41188899 . C A 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4 +chr10 41221965 . C G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1 +chr10 41235509 . G A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,1:9,3 +chr10 41330689 . T A 0 PASS DP=48;GPV=1;SPV=0.23474;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:5,2:22,1 +chr10 41502686 . C G 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:25,3:8,1 +chr10 41530219 . T G 0 PASS DP=388;GPV=1;SPV=0.00092621;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:176,41:96,5:80,36 +chr10 41568363 . G C 0 PASS DP=146;GPV=1;SPV=0.034801;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:18,6:52,4 +chr10 41574820 . C A 0 PASS DP=371;GPV=1;SPV=0.032569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:211:172,31:79,18:93,13 +chr10 41580002 . T TA 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:21,3:4,1 +chr10 41590751 . G T 0 PASS DP=100;GPV=1;SPV=0.030865;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:50,7:8,1 +chr10 41591877 . C G 0 PASS DP=59;GPV=1;SPV=0.036993;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:0,1:31,6 +chr10 41700179 . G A 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr10 41873892 . A C 0 PASS DP=71;GPV=1;SPV=0.0077412;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:11,8:18,8 +chr10 41876136 . A AATGGAATGGAATGGT 0 PASS DP=115;GPV=1;SPV=0.039452;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:55,11:26,4:29,7 +chr10 41882443 . G C 0 PASS DP=382;GPV=1;SPV=0.0082439;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:180,38:99,16:81,22 +chr10 41883355 . C A 0 PASS DP=340;GPV=1;SPV=0.021995;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:152,33:93,23:59,10 +chr10 41886095 . T C 0 PASS DP=446;GPV=1;SPV=0.017344;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:208,36:111,18:97,18 +chr10 41886098 . A T 0 PASS DP=483;GPV=1;SPV=0.035494;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:232,34:137,16:95,18 +chr10 41896476 . C A 0 PASS DP=114;GPV=1;SPV=0.048087;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:41,7:24,6:17,1 +chr10 41906794 . G A 0 PASS DP=172;GPV=1;SPV=0.010477;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:44,7:23,5:21,2 +chr10 41908349 . G A 0 PASS DP=182;GPV=1;SPV=0.040619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:90,15:40,8:50,7 +chr10 41912211 . C G 0 PASS DP=359;GPV=1;SPV=0.029288;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:185,33:96,18:89,15 +chr10 41914473 . G C 0 PASS DP=494;GPV=1;SPV=0.00070564;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:221,57:162,35:59,22 +chr10 41916118 . G GTGGAA 0 PASS DP=52;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:3,1:19,9 +chr10 42070978 . G T 0 PASS DP=4375;GPV=1;SPV=0.046915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2656:2378,277:805,82:1573,195 +chr10 42130126 . T C 0 PASS DP=485;GPV=1;SPV=0.0068565;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:205,39:98,20:107,19 +chr10 42130231 . T C 0 PASS DP=535;GPV=1;SPV=0.022795;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:280:249,31:75,17:174,14 +chr10 42130529 . T C 0 PASS DP=247;GPV=1;SPV=0.030266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:117,25:38,12:79,13 +chr10 42232204 . C T 0 PASS DP=190;GPV=1;SPV=0.042091;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:98,16:62,13:36,3 +chr10 42257919 . T TG 0 PASS DP=135;GPV=1;SPV=0.036907;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:36,5:24,11 +chr10 42336689 . C A 0 PASS DP=62;GPV=1;SPV=0.0051191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:18,6:12,6 +chr10 43933103 . CA C 0 PASS DP=41;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:8,8:5,2 +chr10 44351318 . C CTT 0 PASS DP=58;GPV=1;SPV=0.082275;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:9,4:22,1 +chr10 44387704 . A ATAAATAAATAAATAAATATG 0 PASS DP=57;GPV=1;SPV=0.046798;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,9:9,5:17,4 +chr10 45040366 . G GGACACAGAGTTAATAACTCATA 0 PASS DP=48;GPV=1;SPV=0.0086905;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5 +chr10 45040367 . T A 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,7:8,5 +chr10 46770659 . A AAACAAAACAAAAC 0 PASS DP=34;GPV=1;SPV=0.14282;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,6:9,1 +chr10 46788092 . A G 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:12,3:19,2 +chr10 46790389 . A T 0 PASS DP=54;GPV=1;SPV=0.042981;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,6:10,1 +chr10 47333220 . T C 0 PASS DP=53;GPV=1;SPV=0.00010136;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,7:8,4 +chr10 47533218 . C CACAT 0 PASS DP=87;GPV=1;SPV=0.036306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,2:12,5 +chr10 47743936 . C G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr10 47925390 . G A 0 PASS DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,4:8,1 +chr10 47995880 . GT G 0 PASS DP=67;GPV=1;SPV=0.040006;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:24,1:14,7 +chr10 48009476 . G A 0 PASS DP=63;GPV=1;SPV=0.0066407;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:14,9:5,3 +chr10 48979576 . T A 0 PASS DP=69;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,4:6,1:14,3 +chr10 49148830 . A ATG 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr10 50153979 . G A 0 PASS DP=28;GPV=1;SPV=0.021256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:9,5:1,1 +chr10 50278329 . GT G 0 PASS DP=27;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:5,7:1,3 +chr10 50776052 . G A 0 PASS DP=118;GPV=1;SPV=0.00090389;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:48,28:29,19:19,9 +chr10 52274536 . C T 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1 +chr10 53966068 . A C 0 PASS DP=57;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,2:10,4 +chr10 53978658 . T G 0 PASS DP=60;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,6:8,2:4,4 +chr10 54622852 . G A 0 PASS DP=22;GPV=1;SPV=0.00095261;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:2,7:0,2 +chr10 55247892 . G GA 0 PASS DP=40;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:8,7:5,2 +chr10 57452880 . T A 0 PASS DP=50;GPV=1;SPV=0.0018707;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,4:9,5 +chr10 58781647 . T A 0 PASS DP=69;GPV=1;SPV=9.7569e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,5:14,9 +chr10 63097696 . A AT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2 +chr10 65373204 . A T 0 PASS DP=53;GPV=1;SPV=0.0033085;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,3:9,7 +chr10 65653553 . C CAA 0 PASS DP=33;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,12:4,9:1,3 +chr10 65793818 . C T 0 PASS DP=86;GPV=1;SPV=6.8867e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:19,7:11,10 +chr10 66036862 . ATTTT A 0 PASS DP=43;GPV=1;SPV=0.0091209;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,5:3,4 +chr10 66082275 . G C 0 PASS DP=57;GPV=1;SPV=0.0037028;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,2:11,3 +chr10 66745587 . CT C 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr10 66829854 . T TTTGTTGTTGTTG 0 PASS DP=39;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:3,3:6,5 +chr10 68485798 . A ATT 0 PASS DP=43;GPV=1;SPV=0.0033833;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:10,7:7,5 +chr10 68589662 . ATT A 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,3:3,4 +chr10 68929299 . CTCTCTCTCTCTCTCTT C 0 PASS DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:2,1:11,4 +chr10 69233935 . G C 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,4:3,6 +chr10 69251087 . CTTTTT C 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2 +chr10 70133098 . AAGAGAGAGAG A 0 PASS DP=53;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,10:11,6:4,4 +chr10 70149547 . A ATTTTT 0 PASS DP=24;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,4:2,1 +chr10 71091725 . T C 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,1:4,5 +chr10 71420496 . GGTA G 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,5:2,5 +chr10 71910482 . CA C 0 PASS DP=41;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,11:5,9:3,2 +chr10 72421002 . C CAA 0 PASS DP=39;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:10,6:5,1 +chr10 72587464 . C CA 0 PASS DP=42;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:9,9:4,1 +chr10 73736975 . CA C 0 PASS DP=28;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,7:2,2 +chr10 74694147 . A ATT 0 PASS DP=35;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,14:6,6:1,8 +chr10 74733234 . G GC 0 PASS DP=49;GPV=1;SPV=0.042069;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,2:11,8 +chr10 75330233 . A G 0 PASS DP=60;GPV=1;SPV=1.9498e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:9,5:9,10 +chr10 76485873 . G A 0 PASS DP=65;GPV=1;SPV=0.00030588;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:18,9:8,6 +chr10 76562367 . C CAGAGAGAG 0 PASS DP=52;GPV=1;SPV=0.011519;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:16,10:5,2 +chr10 76617883 . T A 0 PASS DP=28;GPV=1;SPV=0.10288;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,2:3,4 +chr10 77445367 . C G 0 PASS DP=55;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,4:7,3:11,1 +chr10 77937874 . A AT 0 PASS DP=39;GPV=1;SPV=0.011316;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,7:3,2 +chr10 78030446 . CTA C 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,5:2,2 +chr10 78924630 . T C 0 PASS DP=67;GPV=1;SPV=3.3144e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:8,7:16,12 +chr10 79424206 . T G 0 PASS DP=55;GPV=1;SPV=0.0010783;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5 +chr10 80566090 . CAAAAA C 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr10 82094896 . G C 0 PASS DP=70;GPV=1;SPV=7.5053e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:9,8:15,5 +chr10 82713119 . CAA C 0 PASS DP=25;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,5:4,1 +chr10 82892679 . A C 0 PASS DP=48;GPV=1;SPV=0.16171;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr10 83829207 . G C 0 PASS DP=75;GPV=1;SPV=4.2772e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,9:13,4 +chr10 85225562 . G A 0 PASS DP=53;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:6,7:7,5 +chr10 85810124 . T C 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:6,1:18,3 +chr10 87343048 . G GTCGCC 0 PASS DP=109;GPV=1;SPV=0.019585;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:29,7:15,7 +chr10 87349109 . A T 0 PASS DP=79;GPV=1;SPV=0.00021594;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:16,7:14,5 +chr10 87592124 . G A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2 +chr10 87853117 . A AT 0 PASS DP=29;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:5,4:3,5 +chr10 88672625 . AACACACAC A 0 PASS DP=29;GPV=1;SPV=0.076651;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2 +chr10 89196270 . C CAAAAAAAA 0 PASS DP=47;GPV=1;SPV=0.20218;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,4:15,3:9,1 +chr10 89534644 . C CA 0 PASS DP=31;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,6:2,1 +chr10 90331440 . C CT 0 PASS DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1 +chr10 92015428 . C G 0 PASS DP=69;GPV=1;SPV=0.00031133;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:7,10:20,3 +chr10 92295315 . C T 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,5:0,4:1,1 +chr10 92439486 . ACTCTCTCT A 0 PASS DP=34;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:5,1:7,5 +chr10 92523701 . T TA 0 PASS DP=55;GPV=1;SPV=0.033527;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:9,5:11,5 +chr10 93923837 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2 +chr10 93994065 . A G 0 PASS DP=68;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,4:15,2:5,2 +chr10 94465670 . A ATATGTGTGTG 0 PASS DP=57;GPV=1;SPV=0.012883;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,11:13,4:9,7 +chr10 94530160 . A C 0 PASS DP=66;GPV=1;SPV=0.025587;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,4:16,2 +chr10 96802771 . GTTTC G 0 PASS DP=68;GPV=1;SPV=0.00093161;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:6,6:22,6 +chr10 96802886 . T TTTCCTTCCTTCCTTCCTTCCTTCCTTCC 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:4,1:11,4 +chr10 97102439 . G A 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:3,1:3,3 +chr10 97626398 . C A 0 PASS DP=57;GPV=1;SPV=0.0098833;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:3,9:0,6:3,3 +chr10 97642838 . CCTTCCTTCCTTCCTTT C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:5,1:16,3 +chr10 97919747 . A AG 0 PASS DP=39;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,7:7,4 +chr10 97919771 . C CTTTTTTT 0 PASS DP=37;GPV=1;SPV=0.0052707;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,5:7,3 +chr10 98265338 . T C 0 PASS DP=37;GPV=1;SPV=0.0065689;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,4:5,5 +chr10 98696292 . TA T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2 +chr10 100242673 . CAA C 0 PASS DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5 +chr10 100651274 . CTCCCACCACCTCCACTAG C 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr10 100728575 . G A 0 PASS DP=57;GPV=1;SPV=0.001881;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,4:10,4 +chr10 101277345 . C T 0 PASS DP=67;GPV=1;SPV=0.032693;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:22,5:11,1 +chr10 102543991 . C T 0 PASS DP=45;GPV=1;SPV=5.0407e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:9,9:3,9 +chr10 102571521 . A C 0 PASS DP=64;GPV=1;SPV=0.023972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,5:8,4 +chr10 103265239 . G A 0 PASS DP=41;GPV=1;SPV=0.046615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,8:12,1:3,7 +chr10 103482998 . A AG 0 PASS DP=29;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:6,3:5,3 +chr10 104458568 . GTGTA G 0 PASS DP=33;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:5,2:8,2 +chr10 104749226 . GGT G 0 PASS DP=40;GPV=1;SPV=0.050519;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,4:13,4 +chr10 105856310 . T TATATGTA 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1 +chr10 107262183 . C CA 0 PASS DP=65;GPV=1;SPV=0.019365;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,15:14,9:13,6 +chr10 107528169 . A ATT 0 PASS DP=38;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,15:3,6:6,9 +chr10 107535345 . G A 0 PASS DP=70;GPV=1;SPV=0.08973;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,3:20,2 +chr10 108314869 . G A 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,6:3,2 +chr10 108359682 . A ATT 0 PASS DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,6:6,2 +chr10 109242766 . C T 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1 +chr10 111556874 . T C 0 PASS DP=66;GPV=1;SPV=0.00036768;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:14,8:13,7 +chr10 111873917 . G C 0 PASS DP=62;GPV=1;SPV=0.0051191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:14,5:16,7 +chr10 112743571 . G A 0 PASS DP=58;GPV=1;SPV=0.0036217;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,7:10,2 +chr10 112965619 . GTGTGTGTATA G 0 PASS DP=48;GPV=1;SPV=0.025787;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,2:7,6 +chr10 113539025 . A ACAAG 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:25,3:8,1 +chr10 114583404 . AACACACACAC A 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1 +chr10 114884964 . T A 0 PASS DP=55;GPV=1;SPV=0.00045655;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:8,5:11,6 +chr10 115446841 . AATTGTGGATCTCCG A 0 PASS DP=72;GPV=1;SPV=0.00011455;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:17,8:9,5 +chr10 115583563 . A G 0 PASS DP=29;GPV=1;SPV=0.0048547;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,8:3,1 +chr10 115632864 . T TTTTTATTTTATTTTATTTTATTTTA 0 PASS DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2 +chr10 115852033 . G T 0 PASS DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,4:10,4 +chr10 120996872 . C T 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,3:12,5 +chr10 121177924 . CTA C 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chr10 122136543 . G GTATATATATA 0 PASS DP=41;GPV=1;SPV=0.001638;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2 +chr10 122176073 . TTCTCTC T 0 PASS DP=32;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,3:7,1 +chr10 122893058 . C T 0 PASS DP=51;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,4:9,1:3,3 +chr10 123068651 . T TAC 0 PASS DP=61;GPV=1;SPV=0.0073135;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:10,5:15,7 +chr10 123068667 . T C 0 PASS DP=48;GPV=1;SPV=0.016188;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:8,5:8,6 +chr10 124563313 . C CTT 0 PASS DP=37;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,8:2,7:1,1 +chr10 125098657 . GGAGA G 0 PASS DP=29;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,4:2,1:0,3 +chr10 125098740 . G C 0 PASS DP=56;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chr10 125636372 . A AT 0 PASS DP=59;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,11:5,7:2,4 +chr10 125894836 . C T 0 PASS DP=215;GPV=1;SPV=0.010391;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:92,12:51,8:41,4 +chr10 125900074 . A T 0 PASS DP=108;GPV=1;SPV=0.02342;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:45,7:23,6:22,1 +chr10 126002763 . C CT 0 PASS DP=41;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,2:4,5 +chr10 126905003 . G A 0 PASS DP=74;GPV=1;SPV=1.6575e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:17,7:10,13 +chr10 128738180 . T A 0 PASS DP=73;GPV=1;SPV=0.00033815;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:17,5:10,6 +chr10 129560954 . A AGT 0 PASS DP=47;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,12:4,10:3,2 +chr10 129629632 . C A 0 PASS DP=63;GPV=1;SPV=0.010836;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,5:16,1 +chr10 131150240 . C CCCCCACGGTTCTATGCACACCAGTGATCTGGGCATAGCA 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,3:1,1 +chr10 131777963 . T A 0 PASS DP=44;GPV=1;SPV=0.010707;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2 +chr10 132237175 . TGACTGTGCTCCCTG T 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2 +chr10 132824932 . G T 0 PASS DP=36;GPV=1;SPV=0.18627;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:8,1:10,2 +chr10 132858997 . G A 0 PASS DP=75;GPV=1;SPV=0.0021771;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,5:18,4 +chr10 133403341 . T C 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:8,7:1,2 +chr10 133536297 . T C 0 PASS DP=57;GPV=1;SPV=0.019608;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,4:10,7 +chr10 133650165 . T G 0 PASS DP=80;GPV=1;SPV=0.06388;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:16,5:32,2 +chr10 133765527 . G A 0 PASS DP=52;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,3:12,2 +chr11 133520 . G A 0 PASS DP=86;GPV=1;SPV=0.046808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:21,8:23,1 +chr11 148063 . A G 0 PASS DP=60;GPV=1;SPV=0.0074853;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,4:10,7 +chr11 192716 . G C 0 PASS DP=37;GPV=1;SPV=0.032095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,1:7,5 +chr11 2132055 . G GTA 0 PASS DP=41;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,1:9,5 +chr11 3504395 . ATTT A 0 PASS DP=57;GPV=1;SPV=0.00020889;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,23:8,17:9,6 +chr11 3754941 . C CA 0 PASS DP=36;GPV=1;SPV=0.20787;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:11,5:9,1 +chr11 4349920 . C T 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,4:11,5 +chr11 6214034 . GA G 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr11 7427021 . T C 0 PASS DP=54;GPV=1;SPV=0.0092391;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,5:11,9 +chr11 8915356 . TTC T 0 PASS DP=32;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,1:10,5 +chr11 8952275 . C T 0 PASS DP=47;GPV=1;SPV=0.14184;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:10,1:12,2 +chr11 10250636 . T G 0 PASS DP=70;GPV=1;SPV=0.00010692;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:13,10:14,6 +chr11 10336617 . TCGCCACACTGACTTC T 0 PASS DP=53;GPV=1;SPV=0.0033085;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,5:11,5 +chr11 11110047 . T C 0 PASS DP=36;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:9,3:4,1 +chr11 11560150 . A T 0 PASS DP=24;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2 +chr11 12168964 . GAAAA G 0 PASS DP=41;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:5,3:5,1 +chr11 12484504 . G GGTGTGT 0 PASS DP=45;GPV=1;SPV=0.0037237;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,10:5,6:4,4 +chr11 12606499 . C CTATATATA 0 PASS DP=31;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1 +chr11 12870983 . A G 0 PASS DP=72;GPV=1;SPV=7.7661e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:14,12:12,2 +chr11 13461930 . C CT 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,8:2,1 +chr11 14415903 . TAAAA T 0 PASS DP=36;GPV=1;SPV=0.13094;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:7,4:7,2 +chr11 15116804 . C T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:2,1:12,3 +chr11 15207646 . C G 0 PASS DP=65;GPV=1;SPV=0.0026408;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:9,5:19,5 +chr11 16674189 . C CAAAAA 0 PASS DP=30;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,3:7,1 +chr11 17051564 . G C 0 PASS DP=51;GPV=1;SPV=0.082922;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,6:12,2:6,4 +chr11 17180515 . C CA 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,1:11,3 +chr11 17470732 . C G 0 PASS DP=60;GPV=1;SPV=0.0011187;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:11,8:8,12 +chr11 19130795 . C T 0 PASS DP=47;GPV=1;SPV=0.0016553;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,6:6,6 +chr11 19162412 . G A 0 PASS DP=49;GPV=1;SPV=0.00020442;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:6,6:7,11 +chr11 20246180 . A G 0 PASS DP=68;GPV=1;SPV=0.00078492;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:12,5:15,6 +chr11 20323826 . G A 0 PASS DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,3:7,3 +chr11 20525459 . T C 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4 +chr11 20895504 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.00014247;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:3,9:1,1 +chr11 21805391 . TATAAAA T 0 PASS DP=28;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:0,3:4,3 +chr11 22338812 . GGT G 0 PASS DP=52;GPV=1;SPV=0.023047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,8:12,5 +chr11 24594750 . CTT C 0 PASS DP=30;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr11 24796491 . C CTG 0 PASS DP=46;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,5:4,5 +chr11 25075242 . A AGAATTTAGAATTAGGTGGTT 0 PASS DP=71;GPV=1;SPV=0.00040909;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,9:10,3:12,6 +chr11 25075245 . A G 0 PASS DP=66;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,9:12,3:12,6 +chr11 25413650 . G GA 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,6:4,4 +chr11 25422012 . C G 0 PASS DP=67;GPV=1;SPV=2.7081e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,9:12,6 +chr11 25526201 . GAACCCT G 0 PASS DP=60;GPV=1;SPV=0.0027902;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,6:11,9 +chr11 25939239 . AC A 0 PASS DP=50;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,3:1,1:1,2 +chr11 27280562 . T C 0 PASS DP=66;GPV=1;SPV=0.030384;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:24,4:8,2 +chr11 29243445 . G T 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,7:14,3 +chr11 29589997 . A G 0 PASS DP=81;GPV=1;SPV=0.0064655;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:17,3:17,4 +chr11 29850687 . G T 0 PASS DP=59;GPV=1;SPV=0.0026395;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,4:10,4 +chr11 29943767 . G C 0 PASS DP=67;GPV=1;SPV=1.4224e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:14,7:6,7 +chr11 30215486 . A AATAT 0 PASS DP=43;GPV=1;SPV=0.0058369;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,9:5,1 +chr11 31488181 . G GA 0 PASS DP=55;GPV=1;SPV=2.2013e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,7:7,5 +chr11 32685005 . G C 0 PASS DP=73;GPV=1;SPV=0.00096973;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:8,3:19,6 +chr11 32755691 . A ATG 0 PASS DP=29;GPV=1;SPV=0.0099605;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,1:2,3 +chr11 33615191 . G T 0 PASS DP=64;GPV=1;SPV=7.9328e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:10,8:12,6 +chr11 35244742 . A T 0 PASS DP=59;GPV=1;SPV=0.00019519;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:8,2:11,9 +chr11 35466726 . C CAAA 0 PASS DP=36;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,6:6,1 +chr11 39502414 . T G 0 PASS DP=59;GPV=1;SPV=0.0055442;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,8:17,2 +chr11 40042470 . G GATGT 0 PASS DP=52;GPV=1;SPV=0.0079397;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5 +chr11 40739007 . TTG T 0 PASS DP=60;GPV=1;SPV=0.0019977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,7:11,11 +chr11 40739012 . T C 0 PASS DP=62;GPV=1;SPV=0.02308;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,4:13,10 +chr11 41314601 . A C 0 PASS DP=66;GPV=1;SPV=0.0014171;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,4:13,5 +chr11 41754571 . A T 0 PASS DP=66;GPV=1;SPV=0.000113;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,10:10,3 +chr11 42281746 . G A 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,6:11,5 +chr11 42682166 . GTA G 0 PASS DP=58;GPV=1;SPV=0.1041;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,2:12,3 +chr11 42791649 . C A 0 PASS DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:11,6:15,1 +chr11 43588608 . AG A 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,1:12,3 +chr11 43668265 . G T 0 PASS DP=55;GPV=1;SPV=0.00032166;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:14,6:5,6 +chr11 43673492 . C CTT 0 PASS DP=27;GPV=1;SPV=0.096154;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,7:2,4:2,3 +chr11 43873897 . C G 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,7:9,5 +chr11 43999488 . C G 0 PASS DP=37;GPV=1;SPV=0.0029195;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:9,5:4,8 +chr11 45990712 . G GT 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,6:2,3 +chr11 47421249 . C CA 0 PASS DP=25;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,3:4,1 +chr11 48268292 . CTTA C 0 PASS DP=44;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,6:3,2:4,4 +chr11 49096715 . GTATATA G 0 PASS DP=34;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:6,4:4,2 +chr11 49096717 . A G 0 PASS DP=35;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,6:2,4:4,2 +chr11 50212999 . CTT C 0 PASS DP=31;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:7,6:0,1 +chr11 50258764 . C A 0 PASS DP=45;GPV=1;SPV=0.00043913;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:11,5:3,6 +chr11 50687286 . T G 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr11 51203809 . G C 0 PASS DP=155;GPV=1;SPV=0.028967;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:3,1:76,14 +chr11 51268122 . C T 0 PASS DP=78;GPV=1;SPV=0.031805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:12,5:25,9 +chr11 51584839 . G T 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr11 51918829 . T G 0 PASS DP=56;GPV=1;SPV=0.20097;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:34,4:0,0 +chr11 52454893 . C A 0 PASS DP=92;GPV=1;SPV=0.022359;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:29,8:16,2 +chr11 52688785 . C T 0 PASS DP=60;GPV=1;SPV=0.015078;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,10:12,7:12,3 +chr11 53273209 . G A 0 PASS DP=58;GPV=1;SPV=0.031574;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:17,5:12,2 +chr11 53713343 . A T 0 PASS DP=99;GPV=1;SPV=0.036103;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:27,6:18,4 +chr11 54346041 . G A 0 PASS DP=125;GPV=1;SPV=0.039819;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:58,12:8,2:50,10 +chr11 54359415 . T C 0 PASS DP=109;GPV=1;SPV=0.030326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:59,11:32,7:27,4 +chr11 54373339 . A T 0 PASS DP=73;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,5:18,2:17,3 +chr11 54527614 . A G 0 PASS DP=105;GPV=1;SPV=0.023165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:28,9:23,4 +chr11 54528337 . G A 0 PASS DP=146;GPV=1;SPV=0.045252;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,17:27,10:42,7 +chr11 54716696 . A C 0 PASS DP=73;GPV=1;SPV=3.7006e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,20:11,11:6,9 +chr11 54930773 . A T 0 PASS DP=103;GPV=1;SPV=0.030304;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:20,8:26,5 +chr11 57403449 . A G 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3 +chr11 57716572 . A ACCC 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr11 58053630 . A T 0 PASS DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:7,2:2,2 +chr11 59153703 . A ATTTTTT 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,6:5,4 +chr11 59570881 . C CA 0 PASS DP=30;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:8,6:3,1 +chr11 59632729 . C CTATA 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr11 59729119 . ACTTCCGTGTGGCCACCATCACCATCCCCTTC A 0 PASS DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:21,4:17,2 +chr11 61199053 . G A 0 PASS DP=75;GPV=1;SPV=0.00020157;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:17,9:12,4 +chr11 61538352 . A G 0 PASS DP=53;GPV=1;SPV=0.0025067;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,7:7,5 +chr11 61939559 . G T 0 PASS DP=49;GPV=1;SPV=0.0015209;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,7:5,2 +chr11 62951703 . ATG A 0 PASS DP=21;GPV=1;SPV=0.0024326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,2:3,6 +chr11 62951735 . G A 0 PASS DP=17;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,2:0,4 +chr11 63062558 . C CTTTTTTTT 0 PASS DP=19;GPV=1;SPV=0.0030303;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,4:0,2:0,2 +chr11 64444240 . TTTTC T 0 PASS DP=31;GPV=1;SPV=0.038078;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:4,4:9,3 +chr11 64549871 . C CAAAAA 0 PASS DP=30;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,4:3,1 +chr11 64595844 . G A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr11 64929914 . T G 0 PASS DP=39;GPV=1;SPV=0.032593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:6,7:13,4 +chr11 65250286 . G GAGAGAAAGAAAGAA 0 PASS DP=40;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:7,3:6,1 +chr11 65637377 . C CT 0 PASS DP=29;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,5:3,4 +chr11 65732470 . C CAA 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,4:5,1 +chr11 65781006 . G T 0 PASS DP=75;GPV=1;SPV=0.0011112;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:14,6:20,7 +chr11 68421686 . CTG C 0 PASS DP=40;GPV=1;SPV=0.0035533;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:6,12:6,2 +chr11 68511463 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,3:9,2 +chr11 69009315 . A G 0 PASS DP=69;GPV=1;SPV=1.0256e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:8,9:11,9 +chr11 69020915 . C T 0 PASS DP=71;GPV=1;SPV=0.00023464;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7 +chr11 69020916 . G GC 0 PASS DP=68;GPV=1;SPV=0.00027215;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:10,4:14,7 +chr11 69020917 . A C 0 PASS DP=68;GPV=1;SPV=0.000451;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,4:14,6 +chr11 69020918 . G T 0 PASS DP=67;GPV=1;SPV=0.00065599;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:9,4:14,5 +chr11 70740115 . C G 0 PASS DP=58;GPV=1;SPV=0.020178;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,8:12,2 +chr11 71730993 . A G 0 PASS DP=74;GPV=1;SPV=0.1063;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:23,1:20,4 +chr11 71886995 . C G 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:14,6:7,4 +chr11 71982335 . C CAAAAA 0 PASS DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:6,10:2,2 +chr11 72150044 . C CAA 0 PASS DP=21;GPV=1;SPV=0.001998;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,9:0,7:0,2 +chr11 72258983 . T C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr11 72346999 . A C 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,1:16,3 +chr11 73131931 . C A 0 PASS DP=69;GPV=1;SPV=0.0010794;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,8:16,6 +chr11 76174508 . TCATC T 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5 +chr11 76303861 . G T 0 PASS DP=69;GPV=1;SPV=7.061e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:12,5:14,12 +chr11 77057058 . T A 0 PASS DP=67;GPV=1;SPV=0.0001506;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,8:10,3 +chr11 77397245 . A G 0 PASS DP=62;GPV=1;SPV=0.0025855;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:10,3:15,6 +chr11 77479602 . CT C 0 PASS DP=27;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:5,3:1,1 +chr11 78108608 . A G 0 PASS DP=79;GPV=1;SPV=1.594e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:7,11:18,8 +chr11 79324390 . TA T 0 PASS DP=68;GPV=1;SPV=0.017796;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:15,3:15,3 +chr11 79509907 . CA C 0 PASS DP=36;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,6:3,1 +chr11 80100384 . T C 0 PASS DP=63;GPV=1;SPV=4.4794e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:8,8:10,9 +chr11 81523077 . T C 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2 +chr11 83508403 . A ATTTTTT 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2 +chr11 83510830 . G GTTT 0 PASS DP=22;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:3,2:4,2 +chr11 85325809 . T C 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,2:10,2 +chr11 85536214 . CA C 0 PASS DP=33;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:7,4:7,1 +chr11 88556319 . C CT 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:14,3:3,2 +chr11 89210366 . T C 0 PASS DP=46;GPV=1;SPV=0.014776;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5 +chr11 89210381 . TGAAATAAAGTAA T 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,5:9,4 +chr11 89262873 . C A 0 PASS DP=22;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:0,0:4,2 +chr11 89935310 . AT A 0 PASS DP=63;GPV=1;SPV=0.003711;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:5,5:12,4 +chr11 91801131 . T A 0 PASS DP=49;GPV=1;SPV=0.0035851;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:5,10:12,8 +chr11 93346145 . G T 0 PASS DP=70;GPV=1;SPV=0.0015381;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:18,7:14,6 +chr11 93452906 . G C 0 PASS DP=65;GPV=1;SPV=6.2649e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:7,7:12,9 +chr11 94238696 . G A 0 PASS DP=265;GPV=1;SPV=0.039739;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:130,28:70,11:60,17 +chr11 95318308 . A G 0 PASS DP=58;GPV=1;SPV=2.6145e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,5:9,9 +chr11 95462565 . C CT 0 PASS DP=29;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:3,1:11,3 +chr11 95724559 . G C 0 PASS DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,6:11,4 +chr11 95899636 . T TAAAA 0 PASS DP=42;GPV=1;SPV=0.044118;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,12:0,9:2,3 +chr11 97605010 . C T 0 PASS DP=67;GPV=1;SPV=2.3706e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:8,6:13,8 +chr11 97800296 . C A 0 PASS DP=47;GPV=1;SPV=0.00095953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,4:8,5 +chr11 99547003 . C CT 0 PASS DP=42;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,8:6,1 +chr11 100579989 . T C 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4 +chr11 100636542 . C CA 0 PASS DP=35;GPV=1;SPV=0.01236;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:10,7:3,3 +chr11 100796768 . C CT 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:13,7:1,2 +chr11 101085525 . T TAAA 0 PASS DP=28;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:2,5:5,2 +chr11 101548588 . A G 0 PASS DP=47;GPV=1;SPV=0.0019763;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,21:4,13:10,8 +chr11 101626454 . G A 0 PASS DP=55;GPV=1;SPV=0.0025527;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,4:9,4 +chr11 102490405 . C CAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.014223;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:7,5:9,1 +chr11 103526491 . ATTTTTTTTTTTTTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr11 103627150 . CA C 0 PASS DP=36;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:5,5:6,2 +chr11 103985078 . TATTTATTTAATATATTATATATTA T 0 PASS DP=47;GPV=1;SPV=0.14555;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:12,3:13,1 +chr11 104675226 . C T 0 PASS DP=62;GPV=1;SPV=0.0023332;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:10,1:13,7 +chr11 107859582 . T TAA 0 PASS DP=34;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2 +chr11 107986890 . C A 0 PASS DP=59;GPV=1;SPV=7.2622e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:9,7:3,7 +chr11 108190312 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:6,7:2,1 +chr11 108573200 . A G 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:25,2:7,2 +chr11 109502297 . T TGG 0 PASS DP=42;GPV=1;SPV=0.019439;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:6,2:10,4 +chr11 110212787 . G C 0 PASS DP=64;GPV=1;SPV=0.061686;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:29,3:8,4 +chr11 112138696 . G GT 0 PASS DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:9,7:1,2 +chr11 112258281 . CT C 0 PASS DP=25;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2 +chr11 112272994 . CTTTCTTTCTTTCTTTCTTTCTT C 0 PASS DP=35;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:1,4:8,4 +chr11 112359680 . C CTT 0 PASS DP=22;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,10:1,7:2,3 +chr11 114890146 . C T 0 PASS DP=62;GPV=1;SPV=1.4853e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,10:10,6 +chr11 115738577 . C A 0 PASS DP=58;GPV=1;SPV=0.13884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,1:17,3 +chr11 116128030 . G C 0 PASS DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,4:14,3 +chr11 116815591 . TAAAA T 0 PASS DP=31;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:6,2:4,2 +chr11 119066564 . A C 0 PASS DP=49;GPV=1;SPV=0.049732;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:12,2:14,5 +chr11 119441391 . G A 0 PASS DP=70;GPV=1;SPV=8.8917e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,18:6,10:7,8 +chr11 121344692 . G A 0 PASS DP=45;GPV=1;SPV=0.0075968;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:5,8:11,8 +chr11 121347807 . G A 0 PASS DP=43;GPV=1;SPV=0.0017048;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,5:4,5 +chr11 121474639 . T G 0 PASS DP=78;GPV=1;SPV=0.0091933;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:23,4:14,4 +chr11 121830325 . T A 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,6:11,6 +chr11 122017449 . TAC T 0 PASS DP=51;GPV=1;SPV=0.043924;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:18,4:1,2 +chr11 122367751 . G A 0 PASS DP=38;GPV=1;SPV=0.04422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,7:11,6:3,1 +chr11 122367757 . GAA G 0 PASS DP=34;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,8:10,7:1,1 +chr11 122374174 . C CTGTT 0 PASS DP=48;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:1,8:6,6 +chr11 122861418 . A T 0 PASS DP=17;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,3:0,1:0,2 +chr11 123668120 . T C 0 PASS DP=67;GPV=1;SPV=0.0025434;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,9:16,5:11,4 +chr11 124828284 . AATTTATTT A 0 PASS DP=66;GPV=1;SPV=0.032794;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,5:11,3 +chr11 124857970 . ATATATATAT A 0 PASS DP=23;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:3,1:0,1 +chr11 124968725 . T G 0 PASS DP=66;GPV=1;SPV=0.0040177;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,5:15,5 +chr11 127568678 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:11,6:2,2 +chr11 127821345 . A AT 0 PASS DP=39;GPV=1;SPV=0.069764;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,4:10,4 +chr11 127940250 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:1,5:4,2 +chr11 130398137 . C G 0 PASS DP=74;GPV=1;SPV=1.6575e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:16,14:11,6 +chr11 131080791 . A ATTT 0 PASS DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,6:7,2 +chr11 131193574 . C CT 0 PASS DP=58;GPV=1;SPV=0.014457;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,6:14,7 +chr11 131266416 . T C 0 PASS DP=45;GPV=1;SPV=0.0013974;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,12:3,5:7,7 +chr11 131653832 . A T 0 PASS DP=80;GPV=1;SPV=0.00044773;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:13,5:22,9 +chr11 131722021 . A G 0 PASS DP=28;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:2,3:5,2 +chr11 132764193 . C G 0 PASS DP=71;GPV=1;SPV=5.2009e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:11,9:15,7 +chr11 133393042 . C CTTT 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2 +chr11 133534575 . A T 0 PASS DP=61;GPV=1;SPV=0.0003086;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,7:8,4 +chr11 133647801 . C T 0 PASS DP=60;GPV=1;SPV=0.0062702;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:19,5:9,5 +chr11 133675445 . G C 0 PASS DP=38;GPV=1;SPV=0.0069146;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,8:5,2 +chr11 134454134 . G GT 0 PASS DP=73;GPV=1;SPV=0.041468;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:22,3:16,3 +chr11 134457831 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,3:7,1 +chr12 398444 . T C 0 PASS DP=54;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,2:1,1:2,1 +chr12 722069 . G GAGAA 0 PASS DP=26;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:6,4:2,2 +chr12 1501252 . C T 0 PASS DP=33;GPV=1;SPV=0.11252;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,1:10,6 +chr12 1662346 . C CCT 0 PASS DP=20;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:0,0:6,4 +chr12 2873398 . C CAA 0 PASS DP=33;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,6:9,4:3,2 +chr12 2883504 . TATATATA T 0 PASS DP=27;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:3,1:1,1 +chr12 3304425 . T G 0 PASS DP=73;GPV=1;SPV=0.00056062;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,2:17,8 +chr12 3752353 . CACGG C 0 PASS DP=63;GPV=1;SPV=0.001437;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,11:18,8:7,3 +chr12 3931690 . G T 0 PASS DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:0,1:4,1 +chr12 4316865 . GTT G 0 PASS DP=74;GPV=1;SPV=0.0086713;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,9:22,5:12,4 +chr12 4709366 . G GT 0 PASS DP=32;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5 +chr12 5837205 . T A 0 PASS DP=51;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:6,3:9,1 +chr12 6057480 . T TTTA 0 PASS DP=34;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,2:5,3 +chr12 6068835 . CGTGT C 0 PASS DP=35;GPV=1;SPV=0.0012607;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:3,3:6,6 +chr12 7257197 . G A 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,4:5,4 +chr12 7517715 . A AGAAAG 0 PASS DP=41;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:12,6:3,1 +chr12 7590078 . A G 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,1:6,3 +chr12 7827073 . C CTCTT 0 PASS DP=52;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,1:14,3 +chr12 7869465 . G T 0 PASS DP=73;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,1:14,6 +chr12 7878993 . A AC 0 PASS DP=30;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:1,6:2,4 +chr12 8050896 . C A 0 PASS DP=16;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:0,0:5,2 +chr12 8205043 . GC G 0 PASS DP=85;GPV=1;SPV=0.048024;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:20,3:19,7 +chr12 8213852 . C T 0 PASS DP=87;GPV=1;SPV=0.033008;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,3:16,8 +chr12 8217002 . C T 0 PASS DP=85;GPV=1;SPV=0.011994;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:17,4:19,2 +chr12 8463123 . GAACT G 0 PASS DP=61;GPV=1;SPV=5.6664e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:7,12:8,7 +chr12 9109034 . T TTG 0 PASS DP=46;GPV=1;SPV=0.0067749;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,6:10,8 +chr12 9120852 . C CATGTGTGTGT 0 PASS DP=46;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,9:2,5:8,4 +chr12 9293180 . A G 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:1,2:9,5 +chr12 10319865 . C CTT 0 PASS DP=26;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,7:1,1 +chr12 10339343 . C CTTTT 0 PASS DP=34;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,4:6,1 +chr12 12619615 . G A 0 PASS DP=57;GPV=1;SPV=0.058176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:14,3:18,4 +chr12 12694188 . CTTT C 0 PASS DP=19;GPV=1;SPV=0.13725;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1 +chr12 13466979 . T A 0 PASS DP=38;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:3,1:1,1 +chr12 14025896 . TAAAAAAAAAAA T 0 PASS DP=27;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:11,1:2,3 +chr12 14308319 . CT C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr12 16204435 . C CA 0 PASS DP=51;GPV=1;SPV=0.0010064;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,8:10,6 +chr12 16674968 . GTTTTTTTTTTTT G 0 PASS DP=30;GPV=1;SPV=0.0016312;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,14:3,11:1,3 +chr12 16723821 . C CT 0 PASS DP=55;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,5:2,3:2,2 +chr12 16844587 . ATG A 0 PASS DP=50;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:5,4:7,5 +chr12 17770160 . C T 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,4:0,3 +chr12 18085870 . GAGCCAC G 0 PASS DP=37;GPV=1;SPV=0.0028986;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:1,1:6,7 +chr12 20321544 . AT A 0 PASS DP=34;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,9:2,6:4,3 +chr12 21201550 . T A 0 PASS DP=89;GPV=1;SPV=0.00029349;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:17,6:19,6 +chr12 21287197 . A G 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1 +chr12 22175363 . C T 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1 +chr12 24428212 . C CA 0 PASS DP=59;GPV=1;SPV=0.031968;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5 +chr12 25464080 . CT C 0 PASS DP=28;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,3:4,5 +chr12 25870445 . C CTTTCT 0 PASS DP=37;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,7:10,2 +chr12 26035438 . T TATTATATA 0 PASS DP=42;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,4:3,1:2,3 +chr12 26653241 . C CT 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr12 26909472 . C CT 0 PASS DP=43;GPV=1;SPV=0.028073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:12,7:1,1 +chr12 28049532 . T A 0 PASS DP=68;GPV=1;SPV=0.001508;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,7:16,4 +chr12 29326534 . C T 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,1:13,4 +chr12 31083313 . A T 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1 +chr12 33033991 . C T 0 PASS DP=82;GPV=1;SPV=0.0011939;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:24,8:16,7 +chr12 34780417 . T C 0 PASS DP=110;GPV=1;SPV=0.048024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:10,2:41,10 +chr12 34809155 . C T 0 PASS DP=213;GPV=1;SPV=0.02399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:100,12:51,4:49,8 +chr12 34821905 . C G 0 PASS DP=20;GPV=1;SPV=0.0021672;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,2:3,4 +chr12 34841473 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0 +chr12 34862089 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 34862093 . A C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 34873361 . G A 0 PASS DP=57;GPV=1;SPV=0.042219;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:5,1:17,8 +chr12 34899613 . C A 0 PASS DP=65;GPV=1;SPV=0.0035972;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,2:15,6 +chr12 34982824 . G T 0 PASS DP=170;GPV=1;SPV=0.024753;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:90,13:57,11:33,2 +chr12 34988434 . C G 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0 +chr12 35082495 . C A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3 +chr12 35127510 . G C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr12 35131108 . T G 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1 +chr12 35134509 . G A 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3 +chr12 35134528 . G T 0 PASS DP=48;GPV=1;SPV=0.11761;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1 +chr12 35135093 . G C 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr12 35227415 . T A 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:26,4:0,0 +chr12 35261065 . G A 0 PASS DP=43;GPV=1;SPV=0.14804;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:22,4:3,1 +chr12 35286147 . C T 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:28,4:2,0 +chr12 35587910 . TC T 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,1:2,3 +chr12 35657521 . G T 0 PASS DP=228;GPV=1;SPV=0.0024936;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:111,14:72,12:39,2 +chr12 35696775 . T A 0 PASS DP=62;GPV=1;SPV=0.085333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:22,4:14,2 +chr12 35717049 . T C 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,1:11,4 +chr12 35839434 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr12 35933157 . A T 0 PASS DP=141;GPV=1;SPV=0.04153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:72,11:16,3:56,8 +chr12 35966445 . A G 0 PASS DP=198;GPV=1;SPV=0.0062073;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:82,14:26,2:56,12 +chr12 36072677 . T A 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:31,4:1,0 +chr12 36073041 . T G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr12 36178499 . T A 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:1,0:22,4 +chr12 36490969 . C T 0 PASS DP=110;GPV=1;SPV=0.01371;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:54,7:32,4:22,3 +chr12 36525148 . T G 0 PASS DP=53;GPV=1;SPV=0.13984;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:21,1:4,2 +chr12 36609436 . G C 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,3:1,1 +chr12 36700884 . G A 0 PASS DP=31;GPV=1;SPV=0.0024117;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:9,7:0,2 +chr12 37060803 . C A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr12 37237277 . T C 0 PASS DP=71;GPV=1;SPV=0.074973;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:12,2:29,4 +chr12 38928697 . ATGTG A 0 PASS DP=41;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,12:5,9:3,3 +chr12 40288421 . C T 0 PASS DP=70;GPV=1;SPV=0.00022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4 +chr12 40294164 . T TATC 0 PASS DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2 +chr12 40294176 . T A 0 PASS DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2 +chr12 40296839 . GTCTTTCTC G 0 PASS DP=67;GPV=1;SPV=0.0094327;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,4:12,4 +chr12 40924881 . C CATATATATATATATAT 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1 +chr12 40925834 . G GTA 0 PASS DP=36;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:7,3:7,2 +chr12 41822421 . G A 0 PASS DP=74;GPV=1;SPV=0.040848;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2 +chr12 42484059 . C A 0 PASS DP=24;GPV=1;SPV=0.017499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3 +chr12 42974639 . GTGTATATATA G 0 PASS DP=19;GPV=1;SPV=0.21212;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:2,1:2,3 +chr12 43476187 . A C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,1:4,7 +chr12 43554876 . T A 0 PASS DP=27;GPV=1;SPV=0.010836;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1 +chr12 43620454 . G T 0 PASS DP=63;GPV=1;SPV=0.034215;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,5:12,1 +chr12 44214138 . AT A 0 PASS DP=40;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,11:7,8:4,3 +chr12 46256636 . C CAGAGAGAGAGAGAG 0 PASS DP=62;GPV=1;SPV=0.010978;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,8:11,5:4,3 +chr12 46488153 . TAC T 0 PASS DP=31;GPV=1;SPV=0.040535;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,3:4,5 +chr12 47354710 . CAT C 0 PASS DP=50;GPV=1;SPV=0.033698;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,3:13,4 +chr12 47396025 . C T 0 PASS DP=73;GPV=1;SPV=0.00091263;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,10:11,5 +chr12 47971844 . T TAG 0 PASS DP=53;GPV=1;SPV=0.1382;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,5:11,2:19,3 +chr12 48983302 . AAAAAAATATAT A 0 PASS DP=30;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,2:3,4 +chr12 49345559 . G A 0 PASS DP=61;GPV=1;SPV=0.0010308;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:12,13:14,8 +chr12 50158060 . CA C 0 PASS DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,3:3,3 +chr12 50214051 . C CACACACACACACACACAT 0 PASS DP=55;GPV=1;SPV=0.03931;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:11,3:8,9 +chr12 50218910 . C A 0 PASS DP=56;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,4:6,1:7,3 +chr12 50378577 . C T 0 PASS DP=47;GPV=1;SPV=0.076601;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,7:5,4:7,3 +chr12 51721131 . T A 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,5:8,3 +chr12 52005109 . G A 0 PASS DP=74;GPV=1;SPV=7.761e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:13,7:13,6 +chr12 52954857 . G A 0 PASS DP=59;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,3:3,2:3,1 +chr12 54202733 . CAA C 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1 +chr12 54323622 . C CTCTTTCTTTCTT 0 PASS DP=48;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:2,1:22,3 +chr12 54370136 . GT G 0 PASS DP=73;GPV=1;SPV=0.02902;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:23,4:9,1 +chr12 55052474 . TTTTC T 0 PASS DP=44;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:2,2:10,6 +chr12 55667695 . TTG T 0 PASS DP=59;GPV=1;SPV=0.029488;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:17,8:6,3 +chr12 56481199 . CT C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr12 56658163 . T G 0 PASS DP=31;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:3,1:0,1 +chr12 57100718 . GAA G 0 PASS DP=26;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0 +chr12 57656371 . GTCTAGCTCAAGGTTTGTAAACACACCAATCAGCACCCTGTA G 0 PASS DP=55;GPV=1;SPV=0.028809;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,3:12,4 +chr12 57675761 . C CTTTTTTT 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4 +chr12 57697934 . C A 0 PASS DP=44;GPV=1;SPV=0.0046297;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,6:4,4 +chr12 59014908 . T C 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,5:14,6 +chr12 59437058 . A AAAGAAAG 0 PASS DP=22;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,4:0,0 +chr12 60262266 . G A 0 PASS DP=68;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,9:11,6 +chr12 61019806 . G GTA 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr12 62211121 . G A 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:8,4:17,5 +chr12 63045175 . G GACAC 0 PASS DP=56;GPV=1;SPV=0.032993;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,11:15,5:5,6 +chr12 64039628 . C CGTGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=28;GPV=1;SPV=0.23636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,3:7,1:4,2 +chr12 64288687 . C G 0 PASS DP=61;GPV=1;SPV=0.0038864;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:23,6:6,7 +chr12 65074817 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:5,5:3,1 +chr12 65133739 . T TGGAA 0 PASS DP=59;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5 +chr12 65855699 . A AGATGAT 0 PASS DP=51;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,16:5,5:4,11 +chr12 66723239 . T TCTTCCTTCCTTC 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,2:3,2 +chr12 67634086 . A T 0 PASS DP=33;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:3,2:0,1 +chr12 69200335 . G A 0 PASS DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,4:5,1 +chr12 69200653 . GAAGAGAT G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3 +chr12 69282822 . A G 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr12 69346764 . A ATT 0 PASS DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,3:4,6 +chr12 69361272 . T G 0 PASS DP=49;GPV=1;SPV=0.16972;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2 +chr12 69747333 . A T 0 PASS DP=51;GPV=1;SPV=0.057118;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,6:5,3:8,3 +chr12 72429338 . C CATAATA 0 PASS DP=55;GPV=1;SPV=0.0054686;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:15,10:6,4 +chr12 73778707 . T TA 0 PASS DP=50;GPV=1;SPV=0.019411;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,14:12,10:6,4 +chr12 75379854 . A T 0 PASS DP=51;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,4:9,1:8,3 +chr12 76215499 . TATA T 0 PASS DP=24;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,5:0,1:1,4 +chr12 77722882 . AATG A 0 PASS DP=66;GPV=1;SPV=0.00038845;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:8,3:16,8 +chr12 77873768 . G A 0 PASS DP=31;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,2:0,1:3,1 +chr12 79046386 . C T 0 PASS DP=77;GPV=1;SPV=4.5976e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,10:12,6 +chr12 80394221 . T G 0 PASS DP=28;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:6,3:1,1 +chr12 80462236 . C T 0 PASS DP=90;GPV=1;SPV=0.021075;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:25,2:14,6 +chr12 81584908 . A G 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,3:10,1 +chr12 81927492 . C A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr12 83045707 . T TCA 0 PASS DP=60;GPV=1;SPV=0.0016775;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,3:10,5 +chr12 83360999 . G A 0 PASS DP=62;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:6,3:3,2:3,1 +chr12 83944936 . A ATTTTTTTTTTT 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2 +chr12 84615815 . A G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,1:14,4 +chr12 86152090 . A T 0 PASS DP=68;GPV=1;SPV=0.00063139;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,4:10,6 +chr12 86809568 . A T 0 PASS DP=63;GPV=1;SPV=0.10224;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:13,2:14,1 +chr12 87425877 . G GGGAAATTGTAGGATACAATAAATTCCTCTT 0 PASS DP=44;GPV=1;SPV=0.011333;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6 +chr12 88086704 . T TATCCATCCATCCATCCATCC 0 PASS DP=64;GPV=1;SPV=0.0065482;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,3:11,8 +chr12 88703657 . A G 0 PASS DP=59;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:13,2:14,2 +chr12 89393181 . CA C 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,8:7,1 +chr12 90418660 . G T 0 PASS DP=68;GPV=1;SPV=2.1107e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:14,9:8,6 +chr12 90694392 . CT C 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr12 91421235 . A T 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,6:5,3 +chr12 91630884 . G C 0 PASS DP=77;GPV=1;SPV=0.00028557;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:15,7:17,7 +chr12 91752587 . TTC T 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,4:14,1 +chr12 92007252 . A ATT 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1 +chr12 92023405 . C CA 0 PASS DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,4:4,1 +chr12 93496643 . T TAAA 0 PASS DP=35;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:4,5:7,1 +chr12 93917083 . T TA 0 PASS DP=41;GPV=1;SPV=0.015895;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,5:6,6 +chr12 94668467 . T TA 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2 +chr12 94941821 . A T 0 PASS DP=58;GPV=1;SPV=0.051796;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,3:15,2 +chr12 95029559 . C CT 0 PASS DP=33;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,7:3,1 +chr12 95594665 . A AT 0 PASS DP=33;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,3:6,2 +chr12 96482765 . G GA 0 PASS DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,11:12,9:6,2 +chr12 96902920 . CTTT C 0 PASS DP=21;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:5,3:2,1 +chr12 96916230 . T TTTATTA 0 PASS DP=33;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:4,1:5,7 +chr12 98002955 . G GA 0 PASS DP=33;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:12,3:0,1 +chr12 98252998 . C CAAAAAAA 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:13,3:5,2 +chr12 99907812 . TAA T 0 PASS DP=35;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:3,6:4,2 +chr12 101009613 . T A 0 PASS DP=59;GPV=1;SPV=3.0981e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:10,9:9,8 +chr12 101470401 . C CT 0 PASS DP=56;GPV=1;SPV=0.022272;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,7:11,6 +chr12 101661908 . A G 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,3:16,1 +chr12 101661912 . A G 0 PASS DP=48;GPV=1;SPV=0.068571;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:10,4:15,2 +chr12 101884369 . C CAA 0 PASS DP=32;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1 +chr12 102962470 . CT C 0 PASS DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,9:5,2:10,7 +chr12 104115579 . G A 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,4:1,4 +chr12 104440482 . A G 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2 +chr12 104763912 . G T 0 PASS DP=44;GPV=1;SPV=0.0010074;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,8:10,3 +chr12 105186622 . T TATGATATCG 0 PASS DP=52;GPV=1;SPV=0.026928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,5:9,2:6,3 +chr12 105361811 . T C 0 PASS DP=47;GPV=1;SPV=0.00040059;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,4:7,4 +chr12 106200353 . T C 0 PASS DP=40;GPV=1;SPV=0.14936;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,4:13,1 +chr12 106372343 . T G 0 PASS DP=50;GPV=1;SPV=0.038501;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,4:8,2 +chr12 106935571 . C G 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,1:10,4 +chr12 106991393 . G T 0 PASS DP=74;GPV=1;SPV=0.019644;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:19,7:15,3 +chr12 107654842 . A G 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1 +chr12 108108401 . A ATTT 0 PASS DP=48;GPV=1;SPV=9.123e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,17:6,10:4,7 +chr12 108422367 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:4,3:5,4 +chr12 109493040 . T G 0 PASS DP=67;GPV=1;SPV=0.00022263;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,3:12,8 +chr12 109834869 . C CTT 0 PASS DP=44;GPV=1;SPV=0.027668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,15:1,7:3,8 +chr12 109969162 . CT C 0 PASS DP=38;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,8:7,2:6,6 +chr12 110293870 . AT A 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,1:4,5 +chr12 110797520 . C T 0 PASS DP=45;GPV=1;SPV=0.0079921;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:10,5:3,6 +chr12 111376994 . A ATT 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1 +chr12 111811827 . G T 0 PASS DP=67;GPV=1;SPV=0.0027837;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,5:15,3 +chr12 112677377 . TCCTC T 0 PASS DP=18;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,3:0,0:2,3 +chr12 113214507 . CA C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:10,6:0,1 +chr12 113472797 . G C 0 PASS DP=80;GPV=1;SPV=0.00016475;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:9,6:24,9 +chr12 114003961 . C CACACACACACACAT 0 PASS DP=21;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,4:0,3:0,1 +chr12 114816695 . C G 0 PASS DP=72;GPV=1;SPV=0.00080274;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:18,10:14,4 +chr12 114915630 . C T 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:7,5:19,4 +chr12 115260841 . C CGTGTGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.011352;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,14:0,10:2,4 +chr12 115799482 . C T 0 PASS DP=55;GPV=1;SPV=0.18915;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:8,1:27,4 +chr12 116775261 . C CA 0 PASS DP=43;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:9,5:5,3 +chr12 117560566 . A G 0 PASS DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:13,4:15,2 +chr12 117858708 . G A 0 PASS DP=74;GPV=1;SPV=4.5846e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:10,12:15,9 +chr12 120279628 . T G 0 PASS DP=24;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:1,1:6,1 +chr12 120301362 . C CA 0 PASS DP=73;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,4:7,2:15,2 +chr12 120802397 . ATG A 0 PASS DP=33;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,1:7,3 +chr12 121296804 . C T 0 PASS DP=53;GPV=1;SPV=0.00052641;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:9,11:5,8 +chr12 121297857 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,2:13,3 +chr12 121842741 . CTT C 0 PASS DP=27;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,3:4,1 +chr12 121912868 . C CA 0 PASS DP=28;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:5,6:5,1 +chr12 122250341 . C G 0 PASS DP=67;GPV=1;SPV=0.00015414;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:10,7:15,7 +chr12 122357505 . GT G 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,1:16,3 +chr12 122499269 . C CT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,2:2,3 +chr12 123511963 . TCTG T 0 PASS DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,3:5,1 +chr12 123894082 . CT C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,6:4,3 +chr12 124365796 . C T 0 PASS DP=79;GPV=1;SPV=2.1151e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:10,7:16,13 +chr12 124927433 . T C 0 PASS DP=49;GPV=1;SPV=0.00056247;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,6:11,6 +chr12 124927434 . T C 0 PASS DP=53;GPV=1;SPV=0.010309;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:6,7:12,5 +chr12 125077959 . C G 0 PASS DP=83;GPV=1;SPV=9.7831e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,8:15,10 +chr12 125204231 . G A 0 PASS DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:3,3:16,1 +chr12 126194711 . A T 0 PASS DP=61;GPV=1;SPV=0.0077151;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:11,3:14,4 +chr12 126323039 . C A 0 PASS DP=53;GPV=1;SPV=0.00011403;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,7:8,5 +chr12 127096468 . T G 0 PASS DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,2:9,2 +chr12 128241172 . CATGT C 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr12 128698206 . A T 0 PASS DP=36;GPV=1;SPV=0.030499;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,4:6,2 +chr12 128717041 . A T 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,2:9,2 +chr12 128919975 . C CCA 0 PASS DP=39;GPV=1;SPV=0.10714;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:1,2:0,0:1,2 +chr12 129019084 . A T 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr12 129205376 . GA G 0 PASS DP=35;GPV=1;SPV=0.0062662;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,15:7,12:2,3 +chr12 130533169 . G A 0 PASS DP=68;GPV=1;SPV=0.00012624;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:15,6:7,5 +chr12 131585278 . T TG 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr12 131585295 . G A 0 PASS DP=37;GPV=1;SPV=0.042901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2 +chr12 131588543 . G A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,3:0,1 +chr12 131801480 . G A 0 PASS DP=24;GPV=1;SPV=0.051471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:0,1:4,2 +chr12 132136345 . A C 0 PASS DP=24;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2 +chr12 132770233 . A C 0 PASS DP=55;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:7,2:3,1:4,1 +chr12 132830326 . C CA 0 PASS DP=44;GPV=1;SPV=0.0057786;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,9:5,2 +chr12 132937359 . C CA 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,11:5,9:3,2 +chr13 16971208 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr13 16971209 . A T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr13 18450173 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chr13 18462680 . A G 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr13 19353957 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,3:10,5 +chr13 20708978 . A G 0 PASS DP=30;GPV=1;SPV=0.14279;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,2:8,3 +chr13 21206414 . T C 0 PASS DP=54;GPV=1;SPV=0.029105;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3 +chr13 22384933 . C CT 0 PASS DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,7:1,6:2,1 +chr13 22511663 . A G 0 PASS DP=72;GPV=1;SPV=0.00024849;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,9:12,4 +chr13 22852482 . C CAA 0 PASS DP=34;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:12,5:2,1 +chr13 22855254 . C CT 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,4:5,4 +chr13 24468400 . C CT 0 PASS DP=38;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,12:3,5:4,7 +chr13 24973356 . AAC A 0 PASS DP=48;GPV=1;SPV=0.012176;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,4:3,5 +chr13 25835059 . T C 0 PASS DP=57;GPV=1;SPV=0.0028757;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,8:12,8 +chr13 26768786 . A G 0 PASS DP=64;GPV=1;SPV=7.3464e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,5:12,6 +chr13 27214401 . A G 0 PASS DP=64;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,5:9,3:13,2 +chr13 28006728 . C CT 0 PASS DP=26;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,3:2,2 +chr13 28411546 . C CA 0 PASS DP=37;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,7:6,1 +chr13 29073530 . C T 0 PASS DP=79;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,4:15,2:9,2 +chr13 30219405 . C G 0 PASS DP=66;GPV=1;SPV=0.0021523;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,5:16,6 +chr13 30433665 . A C 0 PASS DP=49;GPV=1;SPV=0.052652;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,1:14,5 +chr13 30787963 . G A 0 PASS DP=74;GPV=1;SPV=0.00011498;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,5:16,8 +chr13 34601288 . G A 0 PASS DP=29;GPV=1;SPV=0.0040793;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,6:1,2:0,4 +chr13 35732109 . T C 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,2:10,2 +chr13 37254645 . G C 0 PASS DP=72;GPV=1;SPV=1.3615e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:10,15:12,6 +chr13 38209691 . C CA 0 PASS DP=31;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:5,3:3,3 +chr13 38676047 . T C 0 PASS DP=46;GPV=1;SPV=0.074171;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,7:17,4:8,3 +chr13 38977750 . AT A 0 PASS DP=35;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:11,3:5,1 +chr13 39984753 . CTAAAATAAAA C 0 PASS DP=33;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:2,6:8,8 +chr13 41881750 . T C 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,2:5,3 +chr13 42133185 . T A 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,2:17,2 +chr13 42362135 . C CT 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,3:6,2 +chr13 42877448 . A C 0 PASS DP=17;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:0,0:6,2 +chr13 42882941 . G C 0 PASS DP=40;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,5:2,2:6,3 +chr13 43048325 . C CA 0 PASS DP=60;GPV=1;SPV=0.0060655;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,9:18,8:6,1 +chr13 43434941 . T G 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,3:11,3 +chr13 43643650 . C T 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2 +chr13 45153976 . C CA 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1 +chr13 45435530 . CATATATATAT C 0 PASS DP=18;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,5:1,4:1,1 +chr13 46136076 . C T 0 PASS DP=46;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,4:6,2:1,2 +chr13 46648338 . T G 0 PASS DP=65;GPV=1;SPV=0.00016784;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,6:11,4 +chr13 47055948 . T C 0 PASS DP=77;GPV=1;SPV=0.00024491;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:12,5:21,11 +chr13 47244961 . G A 0 PASS DP=79;GPV=1;SPV=1.6849e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:8,10:18,11 +chr13 48027627 . AT A 0 PASS DP=47;GPV=1;SPV=0.0032683;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:6,3:7,8 +chr13 48209639 . C G 0 PASS DP=58;GPV=1;SPV=0.09513;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:17,2:15,3 +chr13 49839205 . T TACAC 0 PASS DP=49;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:6,4:12,4 +chr13 50796833 . C T 0 PASS DP=60;GPV=1;SPV=0.00039186;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,5:14,7 +chr13 51393074 . A AT 0 PASS DP=59;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,8:7,6 +chr13 53122959 . A AT 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,1:10,5 +chr13 53122978 . C T 0 PASS DP=44;GPV=1;SPV=0.092234;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,6:3,1:6,5 +chr13 53736791 . T A 0 PASS DP=68;GPV=1;SPV=3.3224e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:8,9:10,12 +chr13 54365389 . A T 0 PASS DP=75;GPV=1;SPV=0.0020001;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:22,7:13,5 +chr13 55329147 . C CAA 0 PASS DP=38;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,8:6,7:3,1 +chr13 56266222 . C CA 0 PASS DP=38;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,4:6,1 +chr13 56726381 . AGTGTGTGTGTGT A 0 PASS DP=33;GPV=1;SPV=0.29231;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:8,1:9,3 +chr13 57862275 . G GTATC 0 PASS DP=55;GPV=1;SPV=0.020192;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3 +chr13 59366834 . G A 0 PASS DP=33;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,4:6,2 +chr13 61357580 . T C 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3 +chr13 62010071 . C CTA 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chr13 62613024 . G T 0 PASS DP=69;GPV=1;SPV=0.00012187;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,3:8,6 +chr13 62711562 . AT A 0 PASS DP=22;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:5,1:1,3 +chr13 63511422 . TCCTTTATGTCTTTCAGCCAG T 0 PASS DP=54;GPV=1;SPV=0.06588;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:16,3:16,6 +chr13 63772227 . C T 0 PASS DP=56;GPV=1;SPV=0.0008665;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,5:8,6 +chr13 63781265 . AT A 0 PASS DP=69;GPV=1;SPV=0.00065978;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:14,9:13,2 +chr13 63781267 . T C 0 PASS DP=74;GPV=1;SPV=0.00040099;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:14,9:14,2 +chr13 64231492 . T C 0 PASS DP=30;GPV=1;SPV=0.14279;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,2:3,3 +chr13 64714566 . A ATTTTTTTTTTTT 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,1:7,3 +chr13 66198592 . T TTA 0 PASS DP=50;GPV=1;SPV=0.14923;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:16,1:8,2 +chr13 67483902 . T C 0 PASS DP=71;GPV=1;SPV=0.016905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,4:16,3 +chr13 67561844 . T C 0 PASS DP=68;GPV=1;SPV=0.020125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:9,5:17,5 +chr13 69458583 . CTT C 0 PASS DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:7,4:6,1 +chr13 69884934 . CT C 0 PASS DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,3:13,1 +chr13 70256043 . A G 0 PASS DP=64;GPV=1;SPV=0.00012866;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:11,6:13,10 +chr13 70259728 . TAGATGG T 0 PASS DP=73;GPV=1;SPV=0.0068286;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,6:12,7 +chr13 70549015 . A G 0 PASS DP=47;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,5:1,4:1,1 +chr13 70961531 . T G 0 PASS DP=75;GPV=1;SPV=0.00088242;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:20,11:7,8 +chr13 71749199 . G C 0 PASS DP=55;GPV=1;SPV=0.012218;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,4:6,1 +chr13 72542867 . AGAGAGAT A 0 PASS DP=59;GPV=1;SPV=0.03845;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,4:10,3:9,1 +chr13 72542882 . G A 0 PASS DP=63;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,4:10,3:8,1 +chr13 73402909 . CACACATATATAT C 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3 +chr13 73932713 . T C 0 PASS DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:6,9:12,2 +chr13 75142489 . C A 0 PASS DP=64;GPV=1;SPV=0.022328;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,10:8,4:15,6 +chr13 76968491 . C G 0 PASS DP=83;GPV=1;SPV=4.2063e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:20,9:11,6 +chr13 77360820 . T A 0 PASS DP=28;GPV=1;SPV=0.003096;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:2,4:1,2 +chr13 77519769 . C T 0 PASS DP=51;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4 +chr13 78087327 . CACTTATTAA C 0 PASS DP=73;GPV=1;SPV=0.0028166;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:17,5:14,4 +chr13 78087338 . A T 0 PASS DP=74;GPV=1;SPV=0.0011256;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,5:11,4 +chr13 78191168 . C A 0 PASS DP=67;GPV=1;SPV=9.8808e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:7,8:17,6 +chr13 78822993 . A AAAG 0 PASS DP=41;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,10:6,3:5,7 +chr13 79628093 . T TTAAATAAATAAA 0 PASS DP=55;GPV=1;SPV=0.019466;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:7,9:15,1 +chr13 82339780 . C T 0 PASS DP=32;GPV=1;SPV=0.011976;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:5,4:7,8 +chr13 83964182 . A G 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,4:6,4 +chr13 84796800 . T TTC 0 PASS DP=49;GPV=1;SPV=0.0013799;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,6:6,9 +chr13 85340126 . AT A 0 PASS DP=64;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,4:8,1:6,3 +chr13 85927534 . G A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr13 87465103 . A ATG 0 PASS DP=45;GPV=1;SPV=0.1021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,5:8,2:15,3 +chr13 87465110 . C T 0 PASS DP=43;GPV=1;SPV=0.075461;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,3:13,4 +chr13 87782673 . T A 0 PASS DP=51;GPV=1;SPV=0.0091917;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,4:12,4 +chr13 88317179 . A G 0 PASS DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:1,1:2,2 +chr13 88317181 . A C 0 PASS DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,3:1,2:2,1 +chr13 88622742 . C T 0 PASS DP=85;GPV=1;SPV=0.00020063;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,5:18,6 +chr13 90500067 . C CT 0 PASS DP=60;GPV=1;SPV=0.15576;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:22,2:15,3 +chr13 91642713 . C CTT 0 PASS DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,5:3,4 +chr13 92166958 . A T 0 PASS DP=62;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,4:3,2:0,2 +chr13 92525437 . A AGTGTGTGTGTGT 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3 +chr13 93223019 . C CT 0 PASS DP=37;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1 +chr13 93255797 . T A 0 PASS DP=71;GPV=1;SPV=9.6406e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:16,7:10,7 +chr13 94076640 . TTGGG T 0 PASS DP=62;GPV=1;SPV=0.00060001;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,3:11,7 +chr13 95302342 . A AGTGTGTGT 0 PASS DP=57;GPV=1;SPV=0.00095639;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:10,9:6,5 +chr13 95602909 . G T 0 PASS DP=86;GPV=1;SPV=4.4652e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:14,9:12,10 +chr13 97031769 . AAAAAAAAAAAAAAAATAATAATAATAATAATAAT A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,6:6,3 +chr13 97408704 . C T 0 PASS DP=61;GPV=1;SPV=0.00031477;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,6:11,6 +chr13 97500521 . CAA C 0 PASS DP=48;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,9:3,6:5,3 +chr13 99628396 . C T 0 PASS DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,10:11,5 +chr13 99711403 . CT C 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,3:1,1 +chr13 99784451 . T C 0 PASS DP=20;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,3:1,1:3,2 +chr13 101526154 . TC T 0 PASS DP=49;GPV=1;SPV=0.15876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:13,1:11,2 +chr13 101705292 . C CA 0 PASS DP=30;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:6,7:1,2 +chr13 101779357 . G A 0 PASS DP=73;GPV=1;SPV=6.2767e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,8:15,5 +chr13 102136060 . T G 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,6:10,6 +chr13 102323957 . ATGTGTG A 0 PASS DP=41;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,13:9,7:0,6 +chr13 102692180 . A G 0 PASS DP=63;GPV=1;SPV=0.0027159;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3 +chr13 102905314 . A AT 0 PASS DP=44;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,8:7,3 +chr13 102939754 . G GTT 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,4:2,2 +chr13 103526253 . C CCACACA 0 PASS DP=44;GPV=1;SPV=0.040889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:7,5:4,1 +chr13 103768251 . C T 0 PASS DP=67;GPV=1;SPV=8.3669e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:9,6:10,8 +chr13 104697530 . G C 0 PASS DP=81;GPV=1;SPV=1.6006e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,9:15,9 +chr13 105804138 . G T 0 PASS DP=81;GPV=1;SPV=0.01102;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,5:16,2 +chr13 106085301 . T TA 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,3:5,1 +chr13 107010352 . T G 0 PASS DP=76;GPV=1;SPV=2.035e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:14,8:4,8 +chr13 107736223 . ACGCG A 0 PASS DP=51;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:0,5:0,3:0,2 +chr13 107888693 . G C 0 PASS DP=56;GPV=1;SPV=0.085027;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:15,1:17,5 +chr13 107959959 . C T 0 PASS DP=62;GPV=1;SPV=0.085333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:18,3:18,3 +chr13 108658859 . C A 0 PASS DP=82;GPV=1;SPV=1.7594e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:16,12:10,6 +chr13 109173980 . T G 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,5:0,5 +chr13 110649933 . T G 0 PASS DP=25;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:1,1:3,3 +chr13 110724595 . CTTT C 0 PASS DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,6:6,4 +chr13 112465988 . G A 0 PASS DP=84;GPV=1;SPV=0.00021529;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:21,6:15,9 +chr13 113033031 . C T 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,3:8,7 +chr13 113786629 . ATCATCACCATCATCACTGTCGTTACCC A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:4,3:12,5 +chr13 113912799 . C G 0 PASS DP=73;GPV=1;SPV=2.6785e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,5:13,8 +chr13 113956341 . G GAGT 0 PASS DP=50;GPV=1;SPV=0.026811;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:8,7:12,2 +chr13 114011410 . T TGGGCGTCCC 0 PASS DP=52;GPV=1;SPV=0.0057036;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,2:14,6 +chr13 114011427 . C G 0 PASS DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,2:14,7 +chr13 114011428 . A C 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:6,3:14,7 +chr13 114011431 . AGC A 0 PASS DP=58;GPV=1;SPV=0.0017739;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:9,3:14,7 +chr14 18242075 . G A 0 PASS DP=39;GPV=1;SPV=0.012719;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:1,1:9,5 +chr14 18303525 . C T 0 PASS DP=61;GPV=1;SPV=0.036972;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,6:12,3 +chr14 18466529 . G A 0 PASS DP=32;GPV=1;SPV=0.0045748;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,6:4,5 +chr14 18527284 . C T 0 PASS DP=67;GPV=1;SPV=0.034902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:8,5:16,5 +chr14 18977222 . T C 0 PASS DP=62;GPV=1;SPV=0.032166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,1:11,8 +chr14 19003629 . T G 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr14 19008300 . C T 0 PASS DP=96;GPV=1;SPV=0.041213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:19,6:23,3 +chr14 19023348 . CCTTTCTTTCT C 0 PASS DP=43;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:6,4:6,2 +chr14 19050241 . T C 0 PASS DP=50;GPV=1;SPV=0.28678;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,3:14,1 +chr14 19096492 . A G 0 PASS DP=82;GPV=1;SPV=0.044777;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:37,4:3,1 +chr14 19105551 . A G 0 PASS DP=192;GPV=1;SPV=0.032429;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:90,16:56,12:34,4 +chr14 19108832 . A G 0 PASS DP=57;GPV=1;SPV=0.046541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:13,2:19,6 +chr14 19233877 . G C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr14 19351163 . A G 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,1:4,3 +chr14 19390794 . A G 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:2,1:10,4 +chr14 19437836 . C T 0 PASS DP=42;GPV=1;SPV=0.0018327;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,3:9,6 +chr14 19463797 . G T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr14 19475447 . AATTT A 0 PASS DP=143;GPV=1;SPV=0.045947;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:63,10:34,6:29,4 +chr14 19510043 . A ATT 0 PASS DP=35;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,14:1,7:3,7 +chr14 19689768 . T G 0 PASS DP=61;GPV=1;SPV=0.0063671;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:5,4:13,8 +chr14 19690605 . G A 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4 +chr14 19703569 . C T 0 PASS DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chr14 20506819 . A G 0 PASS DP=50;GPV=1;SPV=0.026326;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2 +chr14 20975145 . G GT 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,3:2,2 +chr14 21178782 . GCA G 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2 +chr14 21203990 . A T 0 PASS DP=69;GPV=1;SPV=9.7569e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:15,9:10,5 +chr14 21881710 . GA G 0 PASS DP=43;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5 +chr14 22665192 . C A 0 PASS DP=68;GPV=1;SPV=0.00078492;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:16,4:11,7 +chr14 23887635 . A AGAAGGAAG 0 PASS DP=34;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:5,3:6,4 +chr14 23890812 . AAG A 0 PASS DP=47;GPV=1;SPV=0.018613;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,4:13,4 +chr14 24505174 . T TTC 0 PASS DP=39;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,7:5,2 +chr14 24905596 . A T 0 PASS DP=48;GPV=1;SPV=0.0015312;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:9,4:9,7 +chr14 25954318 . C CTT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:4,4:0,1 +chr14 26368340 . CA C 0 PASS DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,3:7,1 +chr14 28510631 . C T 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,1:12,3 +chr14 29046920 . G GTA 0 PASS DP=33;GPV=1;SPV=0.0021846;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,11:4,5:4,6 +chr14 29522631 . A T 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4 +chr14 29990494 . TATATATACATATGTATATATAC T 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4 +chr14 31695345 . CT C 0 PASS DP=53;GPV=1;SPV=0.00084635;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,6:8,6 +chr14 32880218 . C CTTCT 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,1:12,4 +chr14 33312488 . G C 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,3:11,4 +chr14 34664149 . ATT A 0 PASS DP=44;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,9:3,5:8,4 +chr14 35792817 . G A 0 PASS DP=31;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:9,3:3,1 +chr14 37302633 . C CT 0 PASS DP=29;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,9:3,3 +chr14 37337360 . T A 0 PASS DP=19;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:2,1:3,1 +chr14 37524565 . C CT 0 PASS DP=32;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,3:4,2 +chr14 37950296 . T A 0 PASS DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:10,2:22,2 +chr14 38857336 . C G 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,9:9,4 +chr14 41218417 . ATTCTTTTT A 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2 +chr14 41368412 . CCT C 0 PASS DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,2:2,3 +chr14 41401360 . C CA 0 PASS DP=30;GPV=1;SPV=0.21886;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:12,3:2,2 +chr14 42705264 . A T 0 PASS DP=61;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,5:8,1:13,4 +chr14 46648949 . C CAAA 0 PASS DP=30;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:3,3:7,1 +chr14 46750528 . CT C 0 PASS DP=26;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,5:6,3 +chr14 47771589 . G A 0 PASS DP=36;GPV=1;SPV=0.13168;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,6:15,2:4,4 +chr14 48462905 . C T 0 PASS DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,4:5,7 +chr14 49570238 . G GA 0 PASS DP=39;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,9:11,7:3,2 +chr14 49643082 . CAAA C 0 PASS DP=37;GPV=1;SPV=0.0041547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,9:6,2 +chr14 49919773 . A G 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,2:2,3 +chr14 50592929 . A T 0 PASS DP=69;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,7:12,2:11,5 +chr14 51077386 . G GTT 0 PASS DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:6,2:1,3 +chr14 51365694 . C T 0 PASS DP=62;GPV=1;SPV=0.022022;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3 +chr14 53080718 . T TTCC 0 PASS DP=28;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,6:2,1 +chr14 53229696 . A T 0 PASS DP=48;GPV=1;SPV=0.011884;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr14 53949884 . T A 0 PASS DP=56;GPV=1;SPV=0.17982;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1 +chr14 54852874 . C T 0 PASS DP=66;GPV=1;SPV=0.01322;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,4:16,3 +chr14 55738029 . CT C 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3 +chr14 55741660 . T C 0 PASS DP=26;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:0,0:4,2 +chr14 57311732 . T TC 0 PASS DP=20;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,1:1,3 +chr14 62011872 . T TACACAC 0 PASS DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2 +chr14 62011928 . T C 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:16,2:6,2 +chr14 63088543 . A AAT 0 PASS DP=67;GPV=1;SPV=0.01699;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,4:13,7 +chr14 63116699 . A AT 0 PASS DP=37;GPV=1;SPV=0.004133;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:6,9:4,4 +chr14 63422729 . TA T 0 PASS DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,5:2,2 +chr14 63566276 . G A 0 PASS DP=30;GPV=1;SPV=0.060124;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:4,2:9,3 +chr14 63627152 . T A 0 PASS DP=42;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,4:2,3:3,1 +chr14 64261239 . C CT 0 PASS DP=37;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,9:0,8:2,1 +chr14 64463642 . G A 0 PASS DP=59;GPV=1;SPV=0.013657;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,6:5,3:6,3 +chr14 64923273 . C CAAAAAAAAAAAA 0 PASS DP=40;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:6,4:11,1 +chr14 65016920 . G GT 0 PASS DP=38;GPV=1;SPV=0.031946;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,4:5,4 +chr14 65102741 . GGC G 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr14 65575579 . CCTT C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3 +chr14 66811561 . G A 0 PASS DP=62;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,4:5,1:13,3 +chr14 66841011 . A G 0 PASS DP=31;GPV=1;SPV=0.015732;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr14 67022567 . T G 0 PASS DP=32;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,1:7,4 +chr14 67382912 . T C 0 PASS DP=57;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,3:14,4 +chr14 68570891 . ACACACATG A 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr14 69879448 . C A 0 PASS DP=83;GPV=1;SPV=1.6852e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:14,8:6,12 +chr14 70113003 . A ATTGTATTCTGAGGTTCTGGGTGGACTTGAAC 0 PASS DP=44;GPV=1;SPV=0.03818;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2 +chr14 70709721 . A G 0 PASS DP=66;GPV=1;SPV=0.00038049;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,14:12,9:14,5 +chr14 71898691 . C T 0 PASS DP=57;GPV=1;SPV=0.020985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,4:14,8 +chr14 72024278 . TAACAGTA T 0 PASS DP=75;GPV=1;SPV=0.0022884;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:21,4:8,4 +chr14 72481805 . CTT C 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,2:8,4 +chr14 72874115 . A G 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:8,10:13,6 +chr14 73278745 . T C 0 PASS DP=43;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,5:5,2:6,3 +chr14 73350074 . T TACAC 0 PASS DP=43;GPV=1;SPV=0.0079902;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,11:8,9:4,2 +chr14 73352433 . TAC T 0 PASS DP=22;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:4,2:0,3 +chr14 73385496 . C CT 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1 +chr14 73440198 . T C 0 PASS DP=57;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:6,2:3,1:3,1 +chr14 74159574 . T G 0 PASS DP=43;GPV=1;SPV=0.17651;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,3:10,2 +chr14 74325449 . AC A 0 PASS DP=56;GPV=1;SPV=0.052719;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,2:14,3 +chr14 74401689 . G T 0 PASS DP=85;GPV=1;SPV=4.9508e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:13,5:17,8 +chr14 74427118 . C CTT 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,2:9,4 +chr14 75235381 . CA C 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,4:2,3 +chr14 76113654 . A C 0 PASS DP=58;GPV=1;SPV=0.0018324;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:14,5:10,6 +chr14 76445466 . C CAA 0 PASS DP=20;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,4:0,0 +chr14 76564798 . G A 0 PASS DP=30;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,2:0,0 +chr14 76926439 . A G 0 PASS DP=58;GPV=1;SPV=0.0018191;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,9:6,1:7,8 +chr14 77168290 . CA C 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,5:4,1 +chr14 79376267 . C T 0 PASS DP=23;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:0,1:4,1 +chr14 79803901 . A G 0 PASS DP=56;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,2:1,1:4,1 +chr14 80274525 . T A 0 PASS DP=45;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,4:8,2:8,2 +chr14 81572257 . T C 0 PASS DP=18;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:1,1:4,1 +chr14 83100850 . TC T 0 PASS DP=30;GPV=1;SPV=0.26374;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,5:1,3:6,2 +chr14 85889810 . C G 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3 +chr14 87048226 . A C 0 PASS DP=61;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:5,2:2,1:3,1 +chr14 88592491 . CTT C 0 PASS DP=34;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,4:4,2 +chr14 88759685 . T TAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:5,3:4,2 +chr14 90802969 . T TA 0 PASS DP=60;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,8:14,8 +chr14 91943401 . C T 0 PASS DP=49;GPV=1;SPV=0.064803;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:16,3:10,3 +chr14 92351236 . G GCGCGCACACACACACACACACACACA 0 PASS DP=37;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,3:6,1 +chr14 92896194 . TA T 0 PASS DP=50;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:10,3:2,6 +chr14 93484905 . G T 0 PASS DP=66;GPV=1;SPV=1.2103e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,9:7,6 +chr14 94864180 . A AAG 0 PASS DP=25;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1 +chr14 95122959 . C CAAAGAAAGAAAG 0 PASS DP=40;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3 +chr14 95744395 . ATGTGTGTG A 0 PASS DP=37;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:1,4:6,3 +chr14 95843649 . CA C 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr14 96715737 . T A 0 PASS DP=24;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,3:3,1 +chr14 97067392 . T G 0 PASS DP=48;GPV=1;SPV=0.034106;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,9:4,5:7,4 +chr14 97154229 . T C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr14 97405405 . TAA T 0 PASS DP=48;GPV=1;SPV=0.0060449;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:13,5:4,10 +chr14 97514252 . CTTTT C 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,1:12,3 +chr14 97788367 . A T 0 PASS DP=37;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:1,10:1,1:0,9 +chr14 98693319 . A T 0 PASS DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,6:13,4 +chr14 99107972 . CT C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr14 99790865 . C T 0 PASS DP=39;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:8,2:11,2 +chr14 100546780 . G A 0 PASS DP=65;GPV=1;SPV=0.062457;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,5:12,3:8,2 +chr14 100578856 . C CTT 0 PASS DP=34;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:8,6:6,1 +chr14 100770434 . G A 0 PASS DP=70;GPV=1;SPV=0.00083564;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,1:11,7 +chr14 100843833 . GT G 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,6:4,4 +chr14 101724296 . T TC 0 PASS DP=44;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,9:6,5:5,4 +chr14 101724298 . T A 0 PASS DP=44;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:7,5:4,3 +chr14 101724305 . C CTA 0 PASS DP=48;GPV=1;SPV=0.016188;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,7:7,4 +chr14 101724481 . A ATG 0 PASS DP=63;GPV=1;SPV=0.00949;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:6,2:9,5 +chr14 101724601 . T C 0 PASS DP=45;GPV=1;SPV=0.020802;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,3:5,4 +chr14 101725015 . TAC T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3 +chr14 102228697 . C CA 0 PASS DP=44;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,8:3,1 +chr14 102293702 . A C 0 PASS DP=34;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:4,1:5,3 +chr14 102369784 . AAC A 0 PASS DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3 +chr14 103301836 . C CTT 0 PASS DP=46;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,12:2,10:2,2 +chr14 103346259 . C CT 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,6:6,2 +chr14 104049116 . A G 0 PASS DP=57;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,5:9,3:9,2 +chr14 104872401 . GCGTGGGTGTGC G 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,2:2,2 +chr14 105561151 . ACCCTGTC A 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,2:19,2 +chr14 105565695 . G A 0 PASS DP=91;GPV=1;SPV=0.0057362;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:32,2:7,13 +chr14 105698357 . T G 0 PASS DP=58;GPV=1;SPV=0.0081718;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,7:12,5 +chr14 105759956 . CT C 0 PASS DP=92;GPV=1;SPV=0.011402;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:21,2:22,5 +chr14 105766139 . C G 0 PASS DP=128;GPV=1;SPV=0.00011602;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:22,7:38,9 +chr14 105992391 . T TCTTTCTTTCTTTC 0 PASS DP=47;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:9,1:6,6 +chr14 106309123 . T G 0 PASS DP=51;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,6:10,3:6,3 +chr14 106331794 . A G 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,5:12,1 +chr15 17069468 . CT C 0 PASS DP=86;GPV=1;SPV=0.012263;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:19,3:15,5 +chr15 17072076 . C T 0 PASS DP=100;GPV=1;SPV=0.01199;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:19,5:29,6 +chr15 17078615 . T A 0 PASS DP=134;GPV=1;SPV=0.03685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:64,13:31,6:33,7 +chr15 18359793 . A C 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:12,8:0,0 +chr15 18750174 . C T 0 PASS DP=121;GPV=1;SPV=0.042611;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:11,5:40,7 +chr15 18845299 . A C 0 PASS DP=506;GPV=1;SPV=0.0098083;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:250,29:168,15:82,14 +chr15 19417500 . G A 0 PASS DP=171;GPV=1;SPV=0.0027914;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:87,10:19,3:68,7 +chr15 19572075 . G C 0 PASS DP=48;GPV=1;SPV=0.0307;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,5:6,1 +chr15 19904285 . CT C 0 PASS DP=100;GPV=1;SPV=0.04792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:28,2:22,6 +chr15 19928272 . G A 0 PASS DP=81;GPV=1;SPV=0.032378;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,4:12,2 +chr15 19957403 . T G 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,7:12,4 +chr15 20012291 . G A 0 PASS DP=34;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,2:11,4 +chr15 20037701 . G A 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2 +chr15 20099253 . T TACA 0 PASS DP=70;GPV=1;SPV=0.0070608;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:11,3:19,9 +chr15 20223076 . CA C 0 PASS DP=51;GPV=1;SPV=0.016633;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,9:6,7:11,2 +chr15 20249734 . C T 0 PASS DP=140;GPV=1;SPV=0.030276;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:63,17:39,5:24,12 +chr15 20253720 . C CTATT 0 PASS DP=145;GPV=1;SPV=0.016793;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,13:25,9:33,4 +chr15 20259214 . AG A 0 PASS DP=84;GPV=1;SPV=0.029347;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,9:21,5:12,4 +chr15 20280383 . G A 0 PASS DP=223;GPV=1;SPV=0.041351;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:106,25:36,15:70,10 +chr15 20286892 . A G 0 PASS DP=133;GPV=1;SPV=0.0067522;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:54,19:27,10:27,9 +chr15 20286894 . ATATG A 0 PASS DP=129;GPV=1;SPV=0.0016863;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:47,20:24,11:23,9 +chr15 20288707 . A AT 0 PASS DP=130;GPV=1;SPV=0.015652;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:51,15:27,12:24,3 +chr15 20292295 . G A 0 PASS DP=183;GPV=1;SPV=0.012558;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:91,16:48,7:43,9 +chr15 20335036 . T A 0 PASS DP=143;GPV=1;SPV=0.0040471;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:62,20:19,4:43,16 +chr15 20369449 . T C 0 PASS DP=162;GPV=1;SPV=0.0020434;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:71,25:37,11:34,14 +chr15 20503316 . CT C 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:18,3:7,1 +chr15 20541692 . T A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr15 20550505 . T C 0 PASS DP=176;GPV=1;SPV=0.0034318;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:78,26:39,13:39,13 +chr15 20551970 . G A 0 PASS DP=131;GPV=1;SPV=0.030477;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:67,9:30,5:37,4 +chr15 20555222 . GTATATGTGTAAATA G 0 PASS DP=90;GPV=1;SPV=0.041853;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:28,5:11,4 +chr15 20655655 . T C 0 PASS DP=120;GPV=1;SPV=0.0018747;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:46,19:21,10:25,9 +chr15 20742744 . G A 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3 +chr15 20761130 . G A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chr15 21045807 . A G 0 PASS DP=47;GPV=1;SPV=0.017873;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,5:7,1 +chr15 21046013 . C T 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,3:13,5 +chr15 21070503 . G A 0 PASS DP=29;GPV=1;SPV=0.0066692;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,1:3,4 +chr15 21123418 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr15 21133616 . C G 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,1:6,2 +chr15 21143778 . T C 0 PASS DP=66;GPV=1;SPV=0.043884;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,3:15,3 +chr15 21181101 . T G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr15 21251752 . C G 0 PASS DP=86;GPV=1;SPV=0.035464;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,4:18,5 +chr15 21253620 . A G 0 PASS DP=66;GPV=1;SPV=0.04887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,1:11,6 +chr15 21302947 . G T 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1 +chr15 21372850 . C G 0 PASS DP=76;GPV=1;SPV=0.045913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,3:16,1 +chr15 21441761 . T C 0 PASS DP=126;GPV=1;SPV=0.046139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:27,7:28,8 +chr15 21496299 . C T 0 PASS DP=56;GPV=1;SPV=0.0026985;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,4:8,7 +chr15 21574589 . C G 0 PASS DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,1:5,5 +chr15 22084246 . G A 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr15 22444547 . G T 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5 +chr15 22574358 . G GTGAAGGGTGGC 0 PASS DP=81;GPV=1;SPV=0.0035182;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,5:16,9 +chr15 22624526 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:6,3:3,1 +chr15 22676559 . A G 0 PASS DP=52;GPV=1;SPV=0.0093849;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,9:5,1 +chr15 22801507 . CTT C 0 PASS DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:4,4:3,2 +chr15 22930389 . C CAA 0 PASS DP=26;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:9,4:0,2 +chr15 24484100 . A T 0 PASS DP=48;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,9:7,2:1,7 +chr15 24916499 . A G 0 PASS DP=70;GPV=1;SPV=3.1103e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:7,3:15,10 +chr15 25028250 . C CAAAAAA 0 PASS DP=51;GPV=1;SPV=0.037457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:10,8:7,1 +chr15 25977620 . TTGTGTG T 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:14,1:6,3 +chr15 26142375 . CTT C 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr15 26251825 . T A 0 PASS DP=33;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:2,2:4,1 +chr15 26326358 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr15 26469181 . A AAAGAAAGG 0 PASS DP=48;GPV=1;SPV=0.047937;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,10:12,8:6,2 +chr15 27406472 . G T 0 PASS DP=69;GPV=1;SPV=6.2206e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:16,5:6,7 +chr15 28224134 . T TACACACACACAC 0 PASS DP=45;GPV=1;SPV=0.0062312;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,6:5,2 +chr15 28419072 . A G 0 PASS DP=198;GPV=1;SPV=0.0051507;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:104,17:85,14:19,3 +chr15 28463372 . C CAAA 0 PASS DP=112;GPV=1;SPV=0.037801;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:42,14:19,8:23,6 +chr15 28566577 . G A 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr15 28589665 . G C 0 PASS DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,1:8,5 +chr15 30141449 . A G 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,3:7,1 +chr15 30320597 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr15 30376095 . G A 0 PASS DP=78;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,4:14,3:7,1 +chr15 30515836 . G A 0 PASS DP=56;GPV=1;SPV=0.063892;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,7:11,5:8,2 +chr15 30929816 . ATAT A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr15 31195376 . C T 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,3:10,8 +chr15 31697225 . C T 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,4:8,4 +chr15 32281297 . G C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr15 32440237 . CCCA C 0 PASS DP=46;GPV=1;SPV=0.022707;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:2,1:21,9 +chr15 32513704 . GTTCTGGAGGCTGCCCAACTTGTGAATTGT G 0 PASS DP=41;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1 +chr15 32877887 . T A 0 PASS DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:11,4:6,9 +chr15 33794043 . C T 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr15 33794044 . A AT 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:8,3:9,1 +chr15 33794051 . TA T 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1 +chr15 34177633 . T TAAAAAAAAAAAAA 0 PASS DP=22;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:3,2:2,2 +chr15 34577507 . TACACAC T 0 PASS DP=26;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:0,3:6,2 +chr15 34671303 . G A 0 PASS DP=46;GPV=1;SPV=0.15775;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,5:9,1:6,4 +chr15 36015090 . T G 0 PASS DP=84;GPV=1;SPV=6.3972e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:12,9:13,9 +chr15 36457108 . G GCACA 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1 +chr15 38542913 . ATATG A 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,1:11,3 +chr15 39075207 . A G 0 PASS DP=43;GPV=1;SPV=0.062714;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,9:5,5:7,4 +chr15 39123538 . C CAA 0 PASS DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:2,3:8,1 +chr15 41289671 . AAATAT A 0 PASS DP=23;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,2:0,0 +chr15 42369870 . C T 0 PASS DP=47;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,4:9,1:2,3 +chr15 42734779 . C CT 0 PASS DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,3:8,5 +chr15 46401794 . C CA 0 PASS DP=52;GPV=1;SPV=0.043306;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:9,4:15,9 +chr15 46728037 . A T 0 PASS DP=46;GPV=1;SPV=0.00080188;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,2:7,8 +chr15 48220131 . G A 0 PASS DP=34;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:8,2:9,2 +chr15 49525667 . T C 0 PASS DP=26;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,3:2,2:1,1 +chr15 50635685 . AAAAAAAG A 0 PASS DP=24;GPV=1;SPV=0.31818;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:1,1:4,1 +chr15 50891330 . C A 0 PASS DP=66;GPV=1;SPV=0.00024009;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:14,12:13,7 +chr15 51175616 . G T 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3 +chr15 52612504 . T C 0 PASS DP=32;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:6,1:1,1 +chr15 54250753 . T C 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,4:7,2 +chr15 54442250 . C CTT 0 PASS DP=46;GPV=1;SPV=0.17984;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,10:9,9:2,1 +chr15 54842393 . CGT C 0 PASS DP=43;GPV=1;SPV=0.01567;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:16,7:4,3 +chr15 55744263 . G C 0 PASS DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:4,2:10,10 +chr15 55744264 . G T 0 PASS DP=57;GPV=1;SPV=4.2481e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,3:9,10 +chr15 57426612 . AT A 0 PASS DP=41;GPV=1;SPV=0.0050173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,9:7,6 +chr15 57738279 . ATT A 0 PASS DP=49;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,6:3,3:0,3 +chr15 58283455 . C CA 0 PASS DP=33;GPV=1;SPV=0.0045748;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:4,8:4,4 +chr15 59600806 . AT A 0 PASS DP=59;GPV=1;SPV=0.046347;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,1:13,5 +chr15 59600919 . A AT 0 PASS DP=60;GPV=1;SPV=0.043416;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,3:8,5 +chr15 60613696 . C CTGTG 0 PASS DP=33;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,4:2,2 +chr15 60763065 . A ATTTTT 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr15 61456541 . A C 0 PASS DP=66;GPV=1;SPV=0.00069544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:10,10:19,7 +chr15 62742024 . G T 0 PASS DP=35;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,8:2,5:2,3 +chr15 62750256 . T G 0 PASS DP=68;GPV=1;SPV=0.00018832;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,9:13,5 +chr15 63202277 . C CA 0 PASS DP=68;GPV=1;SPV=0.00093315;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,16:7,10:12,6 +chr15 63789151 . T C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,4:6,3 +chr15 64645012 . C T 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:0,1:8,8 +chr15 64953802 . C CT 0 PASS DP=32;GPV=1;SPV=0.029135;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,2:8,7 +chr15 65142928 . CT C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,2:3,6 +chr15 66079512 . C T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,1:7,3 +chr15 66966775 . T TTTTTATTTTATTTTATTTTATTTTA 0 PASS DP=27;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:1,2:5,2 +chr15 67045069 . C CTATTTATTTATT 0 PASS DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,2:6,2 +chr15 67418577 . C CT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr15 68798260 . TCTCCAGTGTTACTATTCAGA T 0 PASS DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2 +chr15 68798282 . A AATT 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,4:11,1 +chr15 68798283 . C G 0 PASS DP=61;GPV=1;SPV=0.019947;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,4:12,2 +chr15 68883630 . T C 0 PASS DP=51;GPV=1;SPV=0.080194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:14,3:12,2 +chr15 68939156 . G T 0 PASS DP=67;GPV=1;SPV=2.3706e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,4:8,10 +chr15 69255138 . G T 0 PASS DP=60;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,5:14,2 +chr15 70792750 . C CTTTCTT 0 PASS DP=44;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,8:2,3:8,5 +chr15 70827305 . C CT 0 PASS DP=28;GPV=1;SPV=0.013375;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,7:4,2 +chr15 72130557 . A AT 0 PASS DP=29;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:9,3:4,1 +chr15 74071858 . A C 0 PASS DP=311;GPV=1;SPV=0.040856;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:142,26:54,11:88,15 +chr15 74818014 . G GA 0 PASS DP=49;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:14,7:6,1 +chr15 75090710 . C CT 0 PASS DP=23;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:1,4:3,1 +chr15 77738758 . A G 0 PASS DP=46;GPV=1;SPV=0.0034214;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,7:6,3 +chr15 77743790 . G A 0 PASS DP=41;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,6:6,5 +chr15 77951781 . G A 0 PASS DP=71;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:14,4:22,5 +chr15 78909032 . G GTTT 0 PASS DP=38;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,10:2,7:3,3 +chr15 79828226 . C A 0 PASS DP=73;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,4:11,1:15,3 +chr15 80152658 . A G 0 PASS DP=18;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:7,2:0,0 +chr15 81692901 . A T 0 PASS DP=31;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1 +chr15 82307797 . GGTAAAGGAGTGGGAGAGCTTTCAGGGAACGGCAGAACC G 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,4:14,1 +chr15 82488442 . A AG 0 PASS DP=66;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:14,7:10,5:4,2 +chr15 83229856 . A G 0 PASS DP=49;GPV=1;SPV=0.041793;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr15 83874351 . G A 0 PASS DP=69;GPV=1;SPV=1.995e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,21:6,4:15,17 +chr15 83883142 . C T 0 PASS DP=48;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,5:11,3:5,2 +chr15 85359195 . C CAAAAAA 0 PASS DP=26;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:5,4:6,2 +chr15 86396245 . A G 0 PASS DP=63;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:6,4:2,1:4,3 +chr15 90374581 . C CTT 0 PASS DP=26;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,5:2,1 +chr15 91655974 . T A 0 PASS DP=60;GPV=1;SPV=0.001113;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:13,11:13,7 +chr15 92162133 . CT C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,6:2,1 +chr15 92850801 . ATT A 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,5:5,2 +chr15 92874879 . G A 0 PASS DP=58;GPV=1;SPV=6.3565e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,5:8,8 +chr15 94213325 . TA T 0 PASS DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,3:8,8 +chr15 95268394 . T TTG 0 PASS DP=55;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,13:10,6:6,7 +chr15 95309358 . T C 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,1:11,5 +chr15 95439722 . C CA 0 PASS DP=39;GPV=1;SPV=0.0032114;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,7:4,1 +chr15 95762823 . T G 0 PASS DP=56;GPV=1;SPV=0.0010521;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,8:9,6 +chr15 95796709 . A AG 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,3:4,1 +chr15 96472595 . GA G 0 PASS DP=55;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,14:6,11:7,3 +chr15 97124918 . AAAAAT A 0 PASS DP=42;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:8,3:7,3 +chr15 97336448 . T TTC 0 PASS DP=41;GPV=1;SPV=0.15847;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,2:11,3 +chr15 98467626 . A AAAAATGTTT 0 PASS DP=58;GPV=1;SPV=0.0020977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,14:7,5:10,9 +chr15 98537039 . AAAGGGAAGGGAAGGGAAGGG A 0 PASS DP=40;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,5:7,4:1,1 +chr15 98593638 . C CA 0 PASS DP=34;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,7:3,1 +chr15 99319659 . G GTT 0 PASS DP=58;GPV=1;SPV=3.0636e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,21:7,10:6,11 +chr15 99973989 . C CAGAATAAAGCCTTT 0 PASS DP=57;GPV=1;SPV=0.040223;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,3:16,6 +chr15 100458206 . T A 0 PASS DP=78;GPV=1;SPV=2.9336e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:9,11:12,7 +chr15 100467837 . GTA G 0 PASS DP=52;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:16,2:9,2 +chr15 100667845 . G A 0 PASS DP=86;GPV=1;SPV=0.00016163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,8:13,5 +chr15 100939255 . A G 0 PASS DP=61;GPV=1;SPV=8.2383e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:9,6:13,13 +chr15 101757944 . C T 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,3:15,1 +chr15 101908220 . T TCC 0 PASS DP=50;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,7:0,3:0,4 +chr16 329272 . CAAAAA C 0 PASS DP=32;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:2,4:5,4 +chr16 837840 . TTTC T 0 PASS DP=40;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,7:9,1 +chr16 859186 . T A 0 PASS DP=62;GPV=1;SPV=0.028067;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,5:10,4 +chr16 917480 . C T 0 PASS DP=63;GPV=1;SPV=0.00072423;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:15,6:8,4 +chr16 1217108 . G A 0 PASS DP=97;GPV=1;SPV=0.015797;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:27,3:21,4 +chr16 2795130 . A G 0 PASS DP=28;GPV=1;SPV=0.013285;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,2:5,4 +chr16 2851650 . C CAAAAAAAAAA 0 PASS DP=36;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,8:5,1 +chr16 3814215 . CTGTG C 0 PASS DP=33;GPV=1;SPV=0.00070363;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,12:3,8:0,4 +chr16 4211669 . G A 0 PASS DP=48;GPV=1;SPV=0.0264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,5:10,4 +chr16 4584354 . A ATTTTTTTTTTTTTT 0 PASS DP=24;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:1,1:5,5 +chr16 4809188 . GT G 0 PASS DP=30;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,9:4,8:5,1 +chr16 5203355 . T C 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:12,3:1,5 +chr16 5669422 . C CT 0 PASS DP=32;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,12:5,10:0,2 +chr16 5718941 . C A 0 PASS DP=56;GPV=1;SPV=0.0055747;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:12,8:7,6 +chr16 7341720 . C T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,1:7,1 +chr16 8008927 . T A 0 PASS DP=51;GPV=1;SPV=0.061499;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,2:14,4 +chr16 10109031 . AAAAAC A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr16 11419177 . AAAC A 0 PASS DP=55;GPV=1;SPV=0.0071642;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:11,4:8,10 +chr16 11831582 . CT C 0 PASS DP=26;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:5,2:6,2 +chr16 12768867 . C CTT 0 PASS DP=53;GPV=1;SPV=0.02502;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,7:9,2 +chr16 12964384 . G GT 0 PASS DP=45;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,15:8,11:6,4 +chr16 12997410 . G GT 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,7:6,1 +chr16 13015906 . CT C 0 PASS DP=23;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr16 13672033 . GAC G 0 PASS DP=73;GPV=1;SPV=0.00010076;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,5:11,7 +chr16 14984027 . G T 0 PASS DP=136;GPV=1;SPV=0.030074;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:64,16:37,7:27,9 +chr16 15175445 . G A 0 PASS DP=84;GPV=1;SPV=0.016688;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:16,8:20,9 +chr16 15205476 . C T 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,1:14,3 +chr16 15354699 . C A 0 PASS DP=47;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:6,2:10,3 +chr16 15370422 . T TCA 0 PASS DP=58;GPV=1;SPV=0.0079779;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,8:12,5 +chr16 15900355 . A ATTTT 0 PASS DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,2:5,4 +chr16 15990816 . A ATTT 0 PASS DP=41;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:3,3:2,5 +chr16 16368457 . A G 0 PASS DP=108;GPV=1;SPV=0.011997;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:26,1:21,5 +chr16 17039743 . G T 0 PASS DP=81;GPV=1;SPV=0.00017085;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:12,9:23,8 +chr16 17750759 . C A 0 PASS DP=37;GPV=1;SPV=0.024499;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:2,1:4,7 +chr16 17932390 . G T 0 PASS DP=82;GPV=1;SPV=0.0012439;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:18,7:18,4 +chr16 18089694 . A T 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,3:1,6 +chr16 18100039 . G A 0 PASS DP=62;GPV=1;SPV=0.0032976;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,3:12,8 +chr16 18248812 . C T 0 PASS DP=62;GPV=1;SPV=0.026257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,2:11,3 +chr16 19181999 . C CA 0 PASS DP=42;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:11,10:1,2 +chr16 20242017 . G A 0 PASS DP=50;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,3:4,1:2,2 +chr16 21587186 . A ATATAT 0 PASS DP=40;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:5,5:7,5 +chr16 21874887 . G A 0 PASS DP=106;GPV=1;SPV=0.016836;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:21,5:23,5 +chr16 22356949 . AAAAG A 0 PASS DP=29;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,3:5,2 +chr16 22447928 . G A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr16 22541751 . T C 0 PASS DP=63;GPV=1;SPV=0.02202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,6:18,5 +chr16 23040714 . C CAAAAAAAA 0 PASS DP=38;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:6,3:8,1 +chr16 23109841 . CA C 0 PASS DP=36;GPV=1;SPV=0.0013324;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:5,6:3,6 +chr16 23260121 . GGGAAGGAAGGAAGGAAGGAAGGAA G 0 PASS DP=20;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,4:0,0 +chr16 23277615 . CAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.0027387;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,8:0,7:2,1 +chr16 23437888 . C G 0 PASS DP=72;GPV=1;SPV=0.0046274;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:13,2:21,8 +chr16 23553896 . C CA 0 PASS DP=47;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,14:12,9:7,5 +chr16 23726071 . CTG C 0 PASS DP=27;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,5:1,1 +chr16 24049257 . C A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,2:11,2 +chr16 24615462 . A T 0 PASS DP=70;GPV=1;SPV=0.029275;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:14,5:20,1 +chr16 25640694 . AAGTACAC A 0 PASS DP=69;GPV=1;SPV=0.0075593;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,4:14,2 +chr16 25828296 . CTT C 0 PASS DP=27;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:4,1:1,1 +chr16 26509225 . G GAA 0 PASS DP=42;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,10:10,8:5,2 +chr16 26950190 . T C 0 PASS DP=79;GPV=1;SPV=0.0014217;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,10:18,4 +chr16 27187399 . C T 0 PASS DP=71;GPV=1;SPV=0.057558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:19,3:17,2 +chr16 27842101 . A T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3 +chr16 28140694 . T A 0 PASS DP=51;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,5:6,2:6,3 +chr16 28918068 . T G 0 PASS DP=41;GPV=1;SPV=0.016351;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3 +chr16 28918076 . T G 0 PASS DP=42;GPV=1;SPV=0.022461;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,6:11,3 +chr16 29285970 . G GTTT 0 PASS DP=64;GPV=1;SPV=0.0084125;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,11:11,8:6,3 +chr16 29756688 . A C 0 PASS DP=46;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:4,1:3,1 +chr16 30049781 . C T 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,2:12,3 +chr16 30141432 . C CT 0 PASS DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1 +chr16 30244008 . G T 0 PASS DP=82;GPV=1;SPV=0.042203;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:31,4:3,0 +chr16 30850209 . CA C 0 PASS DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,9:12,1 +chr16 31105371 . C G 0 PASS DP=68;GPV=1;SPV=0.012926;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:30,2:3,6 +chr16 31670582 . A C 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,3:11,2 +chr16 31736517 . CT C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:3,7:9,3 +chr16 32111730 . G A 0 PASS DP=70;GPV=1;SPV=0.022505;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:14,6:21,1 +chr16 32116657 . T G 0 PASS DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,1:14,8 +chr16 32824134 . G T 0 PASS DP=75;GPV=1;SPV=0.025256;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,3:17,2 +chr16 33033898 . C A 0 PASS DP=125;GPV=1;SPV=0.015731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:56,14:35,12:21,2 +chr16 33822591 . T G 0 PASS DP=28;GPV=1;SPV=0.22398;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:8,3:5,1 +chr16 33921319 . T C 0 PASS DP=35;GPV=1;SPV=0.011528;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:12,4:1,3 +chr16 34060541 . C G 0 PASS DP=81;GPV=1;SPV=0.018682;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:24,8:12,1 +chr16 34165392 . G A 0 PASS DP=104;GPV=1;SPV=0.041086;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:22,6:18,7 +chr16 34288419 . T G 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,1:4,3 +chr16 36093993 . G A 0 PASS DP=133;GPV=1;SPV=0.043365;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:63,7:24,1:39,6 +chr16 36106679 . T C 0 PASS DP=130;GPV=1;SPV=0.009971;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:53,18:35,10:18,8 +chr16 36678218 . G A 0 PASS DP=33;GPV=1;SPV=0.29588;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:10,1:8,2 +chr16 36750942 . C G 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:10,2:0,4 +chr16 37335382 . C T 0 PASS DP=77;GPV=1;SPV=0.0013413;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:3,1:29,9 +chr16 38267947 . T C 0 PASS DP=150;GPV=1;SPV=0.038711;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:78,19:51,2:27,17 +chr16 46386931 . T C 0 PASS DP=11044;GPV=1;SPV=0.0087432;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6613:5937,671:3513,300:2424,371 +chr16 46386999 . A G 0 PASS DP=13419;GPV=1;SPV=3.1864e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6785:6054,731:3430,367:2624,364 +chr16 46389736 . C T 0 PASS DP=14190;GPV=1;SPV=0.013955;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7169:6353,776:3885,330:2468,446 +chr16 46391132 . T C 0 PASS DP=15216;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7698:6838,788:1845,207:4993,581 +chr16 46460236 . T C 0 PASS DP=164;GPV=1;SPV=0.019249;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:77,23:52,9:25,14 +chr16 46486268 . G A 0 PASS DP=59;GPV=1;SPV=0.0010012;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,4:7,4 +chr16 46975040 . T G 0 PASS DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr16 47860058 . TAC T 0 PASS DP=57;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:13,3:14,1 +chr16 49729639 . CTAT C 0 PASS DP=46;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,5:5,5 +chr16 50108803 . C CA 0 PASS DP=46;GPV=1;SPV=0.0052889;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:17,8:1,1 +chr16 50417312 . A ATGCGTGTG 0 PASS DP=46;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,12:7,5:4,7 +chr16 51134127 . A G 0 PASS DP=60;GPV=1;SPV=0.032422;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:22,2:7,4 +chr16 52014585 . CA C 0 PASS DP=40;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,7:9,6 +chr16 52803772 . AAG A 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,1:5,3 +chr16 54745473 . T G 0 PASS DP=69;GPV=1;SPV=0.10871;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:22,3:18,2 +chr16 55086179 . C G 0 PASS DP=61;GPV=1;SPV=0.00022484;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,10:11,3 +chr16 55770105 . T G 0 PASS DP=46;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:9,3:9,2 +chr16 56021703 . A G 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,4:1,1:5,3 +chr16 56256720 . G C 0 PASS DP=40;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,5:6,3:9,2 +chr16 56740171 . C T 0 PASS DP=76;GPV=1;SPV=0.039456;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,5:16,1 +chr16 56815902 . C G 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,2:7,3 +chr16 57030382 . A AGATGGATGGATG 0 PASS DP=42;GPV=1;SPV=0.086046;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,8:5,6:13,2 +chr16 57311487 . T A 0 PASS DP=45;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,5:2,2:5,3 +chr16 57628903 . T A 0 PASS DP=37;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4 +chr16 58421385 . C A 0 PASS DP=59;GPV=1;SPV=0.0074921;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,3:11,6 +chr16 59258541 . T G 0 PASS DP=39;GPV=1;SPV=0.045809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,6:11,4 +chr16 60007186 . A T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2 +chr16 60007188 . A T 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,3:6,2 +chr16 60490959 . G A 0 PASS DP=67;GPV=1;SPV=0.023295;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:17,2:14,4 +chr16 60774449 . C CA 0 PASS DP=44;GPV=1;SPV=0.090497;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2 +chr16 60895417 . CATTTATTT C 0 PASS DP=56;GPV=1;SPV=0.00595;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,6:9,5 +chr16 60895426 . A G 0 PASS DP=58;GPV=1;SPV=0.0081718;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,7:10,5 +chr16 60910286 . CAA C 0 PASS DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,9:4,1 +chr16 61960119 . ATGTG A 0 PASS DP=92;GPV=1;SPV=0.046863;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,10:15,5:14,5 +chr16 62779476 . A T 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,3:6,1 +chr16 64575222 . GC G 0 PASS DP=78;GPV=1;SPV=0.00098594;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:16,5:17,6 +chr16 64625946 . C G 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,3:18,2 +chr16 66199028 . T C 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,3:12,1 +chr16 66384078 . C CT 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:0,1:7,4 +chr16 67130346 . C CT 0 PASS DP=29;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,2:3,4 +chr16 67370630 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.0031702;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:7,11:2,3 +chr16 67794864 . A T 0 PASS DP=37;GPV=1;SPV=0.00055217;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:3,5:5,8 +chr16 67803650 . CA C 0 PASS DP=36;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:9,5:3,1 +chr16 68601090 . CA C 0 PASS DP=41;GPV=1;SPV=0.0021563;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,8:3,3 +chr16 68787825 . A ATTTTTTTTT 0 PASS DP=44;GPV=1;SPV=0.23178;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2 +chr16 69103003 . ATGTG A 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:3,5:1,3 +chr16 69207215 . C T 0 PASS DP=58;GPV=1;SPV=0.003036;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:11,9:15,3 +chr16 69952303 . A G 0 PASS DP=60;GPV=1;SPV=0.016694;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:8,8:15,4 +chr16 70179149 . T C 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,3:10,2 +chr16 71133955 . C T 0 PASS DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:18,3:16,2 +chr16 71584459 . C T 0 PASS DP=43;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,5:7,2:10,3 +chr16 71898370 . G GA 0 PASS DP=35;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:10,5:4,1 +chr16 72882977 . GGT G 0 PASS DP=45;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:13,6:5,2 +chr16 73105370 . CAT C 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr16 73603772 . C CTTT 0 PASS DP=28;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr16 73682940 . A G 0 PASS DP=35;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:12,4:3,2 +chr16 74110141 . C A 0 PASS DP=60;GPV=1;SPV=0.016839;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,5:11,3 +chr16 74409270 . A C 0 PASS DP=69;GPV=1;SPV=0.028787;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,4:16,7 +chr16 74411066 . T G 0 PASS DP=150;GPV=1;SPV=0.0035276;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:78,15:39,11:39,4 +chr16 74837934 . G A 0 PASS DP=44;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,3:13,2 +chr16 78010669 . A AAT 0 PASS DP=61;GPV=1;SPV=0.010905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,7:6,3:10,4 +chr16 78159672 . GT G 0 PASS DP=36;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:7,8:5,2 +chr16 78422758 . C T 0 PASS DP=35;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,4:7,1:4,3 +chr16 79289854 . A ATTTTT 0 PASS DP=33;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,5:6,3 +chr16 80093544 . A T 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:10,1:12,6 +chr16 81419489 . TTAAAAA T 0 PASS DP=49;GPV=1;SPV=0.0021827;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,6:9,7 +chr16 82345628 . AT A 0 PASS DP=58;GPV=1;SPV=0.025729;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:14,2:9,3 +chr16 82627341 . T C 0 PASS DP=63;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,10:3,6:15,4 +chr16 84051475 . G GC 0 PASS DP=37;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr16 85288290 . T G 0 PASS DP=72;GPV=1;SPV=7.7636e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,9:11,5 +chr16 86128278 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:2,4:6,3 +chr16 86464582 . A G 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,3:3,5 +chr16 86694506 . G A 0 PASS DP=73;GPV=1;SPV=1.0638e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:8,9:15,6 +chr16 88292798 . C CAA 0 PASS DP=45;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:5,7:3,1 +chr16 88565653 . T C 0 PASS DP=55;GPV=1;SPV=0.00010896;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:11,8:5,3 +chr16 88729697 . A G 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,4:10,3 +chr16 88729827 . C A 0 PASS DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:20,2:7,2 +chr16 88794460 . CTT C 0 PASS DP=33;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,5:8,1 +chr16 89677606 . G GAA 0 PASS DP=27;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:4,7:5,1 +chr16 89885002 . G GC 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4 +chr16 89976561 . G GTTT 0 PASS DP=35;GPV=1;SPV=0.082922;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:13,5:5,1 +chr16 90120777 . T C 0 PASS DP=137;GPV=1;SPV=0.01402;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:15,5:39,8 +chr16 90120924 . CTA C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:1,0:15,4 +chr16 90172845 . CAAA C 0 PASS DP=49;GPV=1;SPV=0.23453;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,4:15,3:10,1 +chr16 90226065 . C T 0 PASS DP=66;GPV=1;SPV=0.037715;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,2:18,7 +chr17 595251 . T C 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,4:2,4 +chr17 987235 . A G 0 PASS DP=31;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,4:1,3:5,1 +chr17 1415477 . CTTTT C 0 PASS DP=26;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,5:3,4 +chr17 1704223 . C CA 0 PASS DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,3:4,1 +chr17 2217587 . AGCAAAG A 0 PASS DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,4:8,5 +chr17 2217595 . A AT 0 PASS DP=39;GPV=1;SPV=0.01758;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,4:6,4 +chr17 2454563 . A AT 0 PASS DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,6:5,4 +chr17 2531534 . T G 0 PASS DP=66;GPV=1;SPV=0.00079441;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:12,5:15,7 +chr17 2541168 . A G 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,3:3,4 +chr17 2825751 . C T 0 PASS DP=54;GPV=1;SPV=0.047273;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,2:8,2 +chr17 3058740 . G A 0 PASS DP=38;GPV=1;SPV=0.084679;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3 +chr17 3254642 . C CA 0 PASS DP=42;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,6:7,4 +chr17 4652833 . G GGA 0 PASS DP=36;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:5,7:3,1 +chr17 4852020 . A C 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr17 4857195 . C T 0 PASS DP=76;GPV=1;SPV=3.6836e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:11,11:14,8 +chr17 5369906 . G T 0 PASS DP=71;GPV=1;SPV=0.001305;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:9,6:16,2 +chr17 5717301 . C CT 0 PASS DP=41;GPV=1;SPV=0.16358;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:6,2:16,2 +chr17 5856042 . C T 0 PASS DP=47;GPV=1;SPV=0.0075805;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2 +chr17 6482060 . C G 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,4:4,2 +chr17 6929272 . G C 0 PASS DP=62;GPV=1;SPV=2.0078e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:3,7:14,12 +chr17 6976470 . GCGAAAC G 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4 +chr17 7190077 . GA G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,4:3,3 +chr17 9289793 . C A 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,2:18,3 +chr17 9729234 . A G 0 PASS DP=67;GPV=1;SPV=0.010005;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,6:16,4 +chr17 10461933 . C T 0 PASS DP=60;GPV=1;SPV=0.011827;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,6:14,2 +chr17 10744042 . T C 0 PASS DP=48;GPV=1;SPV=0.077418;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:6,3:18,2 +chr17 13368851 . G GAT 0 PASS DP=25;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:3,4:4,2 +chr17 13584551 . G A 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,4:4,4 +chr17 13782415 . C CAAA 0 PASS DP=28;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:3,6:2,1 +chr17 14151526 . AACACACACAC A 0 PASS DP=42;GPV=1;SPV=0.0074142;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,13:3,7:2,6 +chr17 14440191 . G GGAAA 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:10,7:1,2 +chr17 14753594 . T G 0 PASS DP=72;GPV=1;SPV=0.09797;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:24,2:17,3 +chr17 15242251 . CA C 0 PASS DP=32;GPV=1;SPV=0.01458;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:7,9:5,1 +chr17 15665402 . A G 0 PASS DP=66;GPV=1;SPV=0.018751;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,8:15,1 +chr17 15673794 . A G 0 PASS DP=75;GPV=1;SPV=0.037304;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:27,2:13,11 +chr17 16340427 . A ATTTTT 0 PASS DP=20;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,3:4,1 +chr17 16796879 . C CT 0 PASS DP=57;GPV=1;SPV=0.0037453;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:9,8:7,3 +chr17 17878452 . G T 0 PASS DP=70;GPV=1;SPV=0.0014418;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,8:17,4 +chr17 18368399 . C A 0 PASS DP=79;GPV=1;SPV=2.2099e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:13,8:12,10 +chr17 18398680 . C T 0 PASS DP=77;GPV=1;SPV=0.042853;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:14,6:19,7 +chr17 18661275 . CAA C 0 PASS DP=31;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,8:3,5:1,3 +chr17 18679197 . C A 0 PASS DP=65;GPV=1;SPV=0.00025694;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:15,9:11,7 +chr17 18679198 . C T 0 PASS DP=69;GPV=1;SPV=5.9747e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:16,10:10,8 +chr17 21346975 . T C 0 PASS DP=75;GPV=1;SPV=0.069447;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:27,2:16,4 +chr17 21424791 . T TA 0 PASS DP=89;GPV=1;SPV=0.03763;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,10:14,7:20,3 +chr17 21432479 . AC A 0 PASS DP=111;GPV=1;SPV=0.021284;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:22,3:20,9 +chr17 21626815 . CT C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,3:1,1 +chr17 21849662 . A G 0 PASS DP=251;GPV=1;SPV=0.029297;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:119,20:51,15:68,5 +chr17 21991867 . A AGGAATGGAAT 0 PASS DP=30;GPV=1;SPV=0.0078215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:3,4:6,4 +chr17 22149474 . CT C 0 PASS DP=164;GPV=1;SPV=0.011233;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:80,20:44,10:36,10 +chr17 22153548 . T TA 0 PASS DP=127;GPV=1;SPV=0.073628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:35,5:20,3:15,2 +chr17 22745558 . T C 0 PASS DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2 +chr17 22882295 . G T 0 PASS DP=295;GPV=1;SPV=0.017626;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:142,17:96,15:46,2 +chr17 22882296 . A T 0 PASS DP=306;GPV=1;SPV=0.033148;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:143,18:95,14:48,4 +chr17 22884020 . C T 0 PASS DP=89;GPV=1;SPV=0.055873;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:15,2:35,4 +chr17 22915550 . C A 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr17 22985684 . A T 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2 +chr17 22997213 . C A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1 +chr17 23172989 . G C 0 PASS DP=94;GPV=1;SPV=0.0025892;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:39,15:27,13:12,2 +chr17 26577119 . C G 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,1:9,4 +chr17 26579154 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1 +chr17 26730150 . T C 0 PASS DP=85;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:26,1:15,4 +chr17 26743321 . C T 0 PASS DP=246;GPV=1;SPV=0.017577;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:114,21:69,15:45,6 +chr17 27077935 . T A 0 PASS DP=55;GPV=1;SPV=0.0015164;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,3:9,7 +chr17 27637752 . C T 0 PASS DP=89;GPV=1;SPV=0.031612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:26,7:15,1 +chr17 29236531 . CT C 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,3:11,3 +chr17 30189852 . GTATTTTT G 0 PASS DP=35;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4 +chr17 30439368 . C CTTTTT 0 PASS DP=23;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:4,5:1,2 +chr17 30943848 . AAAAT A 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3 +chr17 31483196 . A C 0 PASS DP=34;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:4,1:3,1 +chr17 32025030 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:5,4:4,1 +chr17 32614072 . A AT 0 PASS DP=40;GPV=1;SPV=0.0032037;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,12:1,10:4,2 +chr17 32948034 . C T 0 PASS DP=33;GPV=1;SPV=0.29549;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:2,3:18,1 +chr17 33094106 . G C 0 PASS DP=77;GPV=1;SPV=0.014944;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:18,4:21,4 +chr17 35963052 . C CA 0 PASS DP=39;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,13:11,8:1,5 +chr17 35974455 . C CACCTATATATATATAT 0 PASS DP=40;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2 +chr17 36271647 . AT A 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,2:17,2 +chr17 36402265 . C CT 0 PASS DP=25;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:1,5:5,2 +chr17 37202712 . TACAC T 0 PASS DP=17;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,0:0,2 +chr17 37453759 . ATTT A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1 +chr17 37895642 . T A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr17 37912651 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,3:1,1 +chr17 38258518 . A T 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:10,3:19,1 +chr17 39280235 . C CA 0 PASS DP=35;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,7:2,1 +chr17 40501685 . G T 0 PASS DP=76;GPV=1;SPV=0.0032628;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,2:16,6 +chr17 40640666 . A T 0 PASS DP=66;GPV=1;SPV=7.8889e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:10,6:13,8 +chr17 41084542 . C A 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chr17 41109461 . C T 0 PASS DP=82;GPV=1;SPV=0.035223;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,7:18,5 +chr17 41220267 . G GA 0 PASS DP=39;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,4:9,4:0,0 +chr17 41310356 . A AG 0 PASS DP=52;GPV=1;SPV=0.0099465;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,5:9,6 +chr17 41719890 . C CTT 0 PASS DP=32;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:1,5:3,3 +chr17 42965126 . A T 0 PASS DP=40;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:1,1:2,1 +chr17 43361367 . T C 0 PASS DP=41;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3 +chr17 43842922 . C T 0 PASS DP=71;GPV=1;SPV=1.1338e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:11,9:7,6 +chr17 43851133 . C CA 0 PASS DP=36;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:8,5:5,1 +chr17 44652655 . A AAAAAAG 0 PASS DP=48;GPV=1;SPV=0.0038981;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:7,5:9,2 +chr17 44729683 . T TAC 0 PASS DP=29;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,4:5,2 +chr17 45035480 . T TA 0 PASS DP=33;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,4:4,4 +chr17 45276823 . C CTT 0 PASS DP=36;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:10,3:6,2 +chr17 45619471 . TC T 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,5:14,5 +chr17 45882230 . CT C 0 PASS DP=34;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,9:5,2 +chr17 46046840 . T TA 0 PASS DP=33;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:2,6:3,2 +chr17 46775609 . C CT 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1 +chr17 46845785 . CTT C 0 PASS DP=22;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:4,3:3,1 +chr17 47530351 . GT G 0 PASS DP=41;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:6,5:3,3 +chr17 48089102 . C CT 0 PASS DP=35;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,12:4,10:1,2 +chr17 48103734 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,9:7,3 +chr17 48143189 . C CT 0 PASS DP=20;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,6:2,1 +chr17 48213350 . C CAA 0 PASS DP=41;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,8:7,7:4,1 +chr17 48385938 . G A 0 PASS DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5 +chr17 48728883 . C T 0 PASS DP=48;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,4:8,1:8,3 +chr17 49024083 . A AT 0 PASS DP=28;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:6,2:0,3 +chr17 49265122 . T TTTCCTTCCTTCCTTCCTTCCTTCC 0 PASS DP=41;GPV=1;SPV=0.26316;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,3:7,1:16,2 +chr17 49347736 . T G 0 PASS DP=35;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,2:3,1:0,1 +chr17 50442326 . T A 0 PASS DP=40;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:4,1:3,1 +chr17 50623263 . A AT 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,7:5,4 +chr17 52559818 . A ATGTG 0 PASS DP=34;GPV=1;SPV=0.0070965;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,14:3,5:4,9 +chr17 52564848 . T TAC 0 PASS DP=39;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:6,3:1,7 +chr17 53700738 . C T 0 PASS DP=39;GPV=1;SPV=0.16084;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:5,3:17,2 +chr17 54632086 . C T 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,2:5,5 +chr17 56192869 . A T 0 PASS DP=39;GPV=1;SPV=0.003085;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,3:3,7 +chr17 56671696 . CTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,2:2,2 +chr17 59409693 . C G 0 PASS DP=93;GPV=1;SPV=7.7505e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:16,4:14,10 +chr17 59860012 . A AT 0 PASS DP=51;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,4:11,4 +chr17 60142207 . CAAAA C 0 PASS DP=35;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:5,6:2,2 +chr17 61561201 . T A 0 PASS DP=68;GPV=1;SPV=0.04108;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:21,4:14,2 +chr17 62691771 . C CA 0 PASS DP=50;GPV=1;SPV=0.016464;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:15,4:5,2 +chr17 62734552 . C T 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,4:12,3 +chr17 62962865 . G A 0 PASS DP=39;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:4,5:1,5 +chr17 63300958 . A T 0 PASS DP=77;GPV=1;SPV=1.2361e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:11,7:12,11 +chr17 63740107 . T TATATATATATATATATACAC 0 PASS DP=39;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:4,3:7,1 +chr17 64929079 . G A 0 PASS DP=78;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:25,4:14,7 +chr17 65015662 . T TAA 0 PASS DP=32;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,9:2,1:3,8 +chr17 65031890 . G GAGAA 0 PASS DP=35;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:4,6:6,3 +chr17 66470190 . CTT C 0 PASS DP=31;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,6:4,5:5,1 +chr17 66587869 . ATG A 0 PASS DP=36;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,3:7,1 +chr17 67782954 . A AATATATATATATAT 0 PASS DP=52;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,9:5,6:15,3 +chr17 67944240 . C T 0 PASS DP=78;GPV=1;SPV=0.000638;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,4:13,9 +chr17 68000292 . A G 0 PASS DP=48;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:3,1:3,1 +chr17 70482847 . A AG 0 PASS DP=48;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,8:9,5:6,3 +chr17 71424528 . G A 0 PASS DP=69;GPV=1;SPV=0.00031133;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,6:14,7 +chr17 71447533 . T TTATATATATA 0 PASS DP=23;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,3:2,5 +chr17 71490902 . T A 0 PASS DP=72;GPV=1;SPV=1.5051e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:10,9:11,9 +chr17 71654194 . T TAA 0 PASS DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr17 71940992 . A ATTTG 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3 +chr17 71950356 . T TTC 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr17 72368737 . CTT C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,1:10,3 +chr17 72368800 . G T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1 +chr17 72754051 . T C 0 PASS DP=30;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:8,2:2,6 +chr17 72882799 . T TTTTTTTTTTTTCTTTTTC 0 PASS DP=31;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,3:5,3 +chr17 73320702 . A C 0 PASS DP=68;GPV=1;SPV=0.0018783;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,3:14,5 +chr17 74169302 . T C 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1 +chr17 74332218 . G T 0 PASS DP=50;GPV=1;SPV=0.014832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,10:5,6:3,4 +chr17 74515870 . G GATATATATATATAT 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr17 76298181 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:3,3:2,6 +chr17 76984386 . TAAA T 0 PASS DP=55;GPV=1;SPV=0.0021686;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,4:10,7 +chr17 77141369 . C T 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:2,1:7,7 +chr17 77383182 . TTCTCTCCC T 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,3:8,3 +chr17 77988752 . C G 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:14,2:21,2 +chr17 80024394 . GAC G 0 PASS DP=58;GPV=1;SPV=0.033228;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,4:14,2 +chr17 80097900 . AAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG A 0 PASS DP=43;GPV=1;SPV=0.0035566;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,2:7,7 +chr17 80634201 . CTG C 0 PASS DP=41;GPV=1;SPV=0.0041266;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7 +chr17 80689350 . C T 0 PASS DP=79;GPV=1;SPV=0.00060445;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,7:14,2 +chr17 81177240 . C CA 0 PASS DP=27;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:1,8:5,1 +chr17 82471791 . C CAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:4,3:10,2 +chr17 82829999 . G T 0 PASS DP=72;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:3,3:1,1:2,2 +chr17 83134778 . G A 0 PASS DP=58;GPV=1;SPV=0.027763;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,4:11,3 +chr17 83214281 . C G 0 PASS DP=43;GPV=1;SPV=0.0084599;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:9,5:4,3 +chr17 83217917 . T C 0 PASS DP=64;GPV=1;SPV=0.013798;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:4,8:23,2 +chr18 555540 . G A 0 PASS DP=75;GPV=1;SPV=0.0025765;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,6:15,8 +chr18 599947 . C CAA 0 PASS DP=50;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:8,6:8,5 +chr18 608500 . AAAAC A 0 PASS DP=56;GPV=1;SPV=0.025579;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,7:9,5 +chr18 645810 . A ATAT 0 PASS DP=25;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:2,2:5,2 +chr18 2584287 . C CA 0 PASS DP=40;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:8,5:4,4 +chr18 2678251 . CTT C 0 PASS DP=42;GPV=1;SPV=0.059981;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,6:6,3:14,3 +chr18 2889133 . CT C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chr18 3598465 . C CT 0 PASS DP=38;GPV=1;SPV=0.0081016;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:8,10:3,2 +chr18 3600680 . C A 0 PASS DP=37;GPV=1;SPV=0.036036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1 +chr18 3602593 . CA C 0 PASS DP=32;GPV=1;SPV=0.019162;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,6:5,1 +chr18 7044162 . CAA C 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,5:4,1 +chr18 7228952 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:10,4:2,1 +chr18 7746638 . G T 0 PASS DP=55;GPV=1;SPV=0.00015597;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:7,7:12,8 +chr18 7985437 . GTATA G 0 PASS DP=47;GPV=1;SPV=0.077418;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1 +chr18 8653545 . C CA 0 PASS DP=31;GPV=1;SPV=0.028009;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,8:9,7:1,1 +chr18 9310495 . A ATTT 0 PASS DP=28;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:4,4:3,1 +chr18 9386260 . G C 0 PASS DP=70;GPV=1;SPV=0.00086348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:14,8:17,6 +chr18 10171803 . CAA C 0 PASS DP=32;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:3,6:4,1 +chr18 10196534 . G A 0 PASS DP=26;GPV=1;SPV=0.0088578;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:1,7:1,3:0,4 +chr18 10788427 . AAAGG A 0 PASS DP=40;GPV=1;SPV=0.020875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,9:3,5:6,4 +chr18 11492817 . G GTGTGT 0 PASS DP=44;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,12:1,7:5,5 +chr18 11492818 . GATAGATAGATAGA G 0 PASS DP=44;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,12:1,7:5,5 +chr18 11616252 . T C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2 +chr18 12230663 . G C 0 PASS DP=42;GPV=1;SPV=0.0043077;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:5,9:8,2 +chr18 12958064 . CTTTTTTTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,2:5,3 +chr18 13370715 . T TTTTTTTTTTTTTTG 0 PASS DP=28;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,1:6,3 +chr18 14722118 . G C 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,2:0,3 +chr18 15363671 . T C 0 PASS DP=55;GPV=1;SPV=0.15352;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2 +chr18 15477796 . T G 0 PASS DP=254;GPV=1;SPV=0.020836;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:146,23:6,1:140,22 +chr18 15506211 . C A 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,0:19,4 +chr18 15519375 . G T 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:2,0:20,4 +chr18 15540844 . G C 0 PASS DP=166;GPV=1;SPV=0.029466;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:81,16:32,11:49,5 +chr18 15576003 . A T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr18 15608486 . A G 0 PASS DP=100;GPV=1;SPV=0.04428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:46,8:6,1 +chr18 15638824 . C G 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0 +chr18 15671242 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr18 15683167 . G A 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,4:1,0 +chr18 15721901 . T C 0 PASS DP=85;GPV=1;SPV=0.014346;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:20,5:13,8 +chr18 15872075 . T G 0 PASS DP=102;GPV=1;SPV=0.037731;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:12,3:44,8 +chr18 16113970 . C A 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr18 16226236 . A T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4 +chr18 16262949 . C A 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4 +chr18 16438479 . G T 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4 +chr18 16484155 . G C 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:6,2:21,4 +chr18 16931632 . C T 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4 +chr18 17213738 . G C 0 PASS DP=151;GPV=1;SPV=0.00088281;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:80,14:56,11:24,3 +chr18 17213876 . C G 0 PASS DP=139;GPV=1;SPV=0.012647;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,18:21,9:54,9 +chr18 17413566 . T G 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:19,4:2,0 +chr18 18124860 . G T 0 PASS DP=38;GPV=1;SPV=0.093821;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:16,1:5,6 +chr18 18693208 . A T 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0 +chr18 18745300 . A C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr18 19324556 . C A 0 PASS DP=56;GPV=1;SPV=0.047782;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0 +chr18 19334057 . G A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr18 19669683 . C G 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,2:9,2 +chr18 19921088 . C T 0 PASS DP=215;GPV=1;SPV=0.01571;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:95,18:9,5:86,13 +chr18 20081322 . C T 0 PASS DP=35;GPV=1;SPV=0.16366;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:4,3:16,2 +chr18 20242118 . C T 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:6,1:22,4 +chr18 20744710 . G C 0 PASS DP=64;GPV=1;SPV=0.05717;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,4:12,1 +chr18 20767030 . G A 0 PASS DP=120;GPV=1;SPV=0.038258;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:31,5:24,7 +chr18 21003903 . A C 0 PASS DP=65;GPV=1;SPV=8.1152e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:5,11:19,6 +chr18 21221838 . G T 0 PASS DP=65;GPV=1;SPV=0.00013614;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,4:12,8 +chr18 21322186 . A C 0 PASS DP=78;GPV=1;SPV=0.014944;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:23,2:11,4 +chr18 21389333 . G GTTTTT 0 PASS DP=32;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:8,4:4,2 +chr18 21886258 . G C 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2 +chr18 24116819 . G GT 0 PASS DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr18 24562425 . A AATATTAAAAGATGATTTTAAAATG 0 PASS DP=57;GPV=1;SPV=0.022677;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:16,4:9,2 +chr18 25996366 . CA C 0 PASS DP=39;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,10:3,9:3,1 +chr18 26508705 . ATATTTC A 0 PASS DP=52;GPV=1;SPV=0.0048849;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,14:6,7:9,7 +chr18 26673929 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr18 30307766 . T A 0 PASS DP=63;GPV=1;SPV=0.0020937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:12,8:16,4 +chr18 30449261 . G T 0 PASS DP=69;GPV=1;SPV=4.0251e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:10,3:11,9 +chr18 31352508 . C T 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,3:8,1 +chr18 31406903 . G A 0 PASS DP=49;GPV=1;SPV=0.00029111;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:5,5:8,9 +chr18 32174185 . C CCA 0 PASS DP=43;GPV=1;SPV=0.30914;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:16,2:5,2 +chr18 33394943 . GTATATA G 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,6:2,2 +chr18 34199145 . GT G 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,3:3,4 +chr18 34378476 . C T 0 PASS DP=54;GPV=1;SPV=0.014587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4 +chr18 34908494 . CT C 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,4:5,1 +chr18 35160497 . C CT 0 PASS DP=48;GPV=1;SPV=0.004949;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,7:7,4 +chr18 35281533 . T C 0 PASS DP=57;GPV=1;SPV=0.0011798;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,4:9,8 +chr18 35517882 . G T 0 PASS DP=73;GPV=1;SPV=0.0021552;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:16,5:17,6 +chr18 36076876 . A G 0 PASS DP=55;GPV=1;SPV=0.22175;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,5:4,2:13,3 +chr18 36792027 . C CA 0 PASS DP=40;GPV=1;SPV=0.010567;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,8:10,7:4,1 +chr18 37082166 . A ATT 0 PASS DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,7:3,1 +chr18 37332729 . T A 0 PASS DP=74;GPV=1;SPV=9.9379e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,5:6,8 +chr18 37364252 . C A 0 PASS DP=60;GPV=1;SPV=1.5288e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,7:10,7 +chr18 37995127 . A T 0 PASS DP=22;GPV=1;SPV=0.074661;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:2,4:4,1 +chr18 38339263 . C T 0 PASS DP=62;GPV=1;SPV=0.00010748;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:6,3:13,8 +chr18 38339635 . G T 0 PASS DP=63;GPV=1;SPV=0.00031429;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:9,8:13,3 +chr18 39129371 . C G 0 PASS DP=53;GPV=1;SPV=0.036816;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:5,6:12,1 +chr18 39971006 . TTA T 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,3:13,4 +chr18 40397519 . C T 0 PASS DP=67;GPV=1;SPV=0.0010058;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:15,8:14,5 +chr18 40601153 . A AT 0 PASS DP=52;GPV=1;SPV=0.090128;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:13,2:16,4 +chr18 42312057 . A C 0 PASS DP=58;GPV=1;SPV=0.00029342;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,4:6,5 +chr18 42476389 . T G 0 PASS DP=50;GPV=1;SPV=0.03514;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,5:6,2:11,3 +chr18 43404148 . GTA G 0 PASS DP=16;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,1:0,1 +chr18 44457096 . T A 0 PASS DP=51;GPV=1;SPV=0.00043522;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3 +chr18 44457097 . G T 0 PASS DP=56;GPV=1;SPV=0.0016713;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,4:10,2 +chr18 47328804 . C G 0 PASS DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,2:6,3 +chr18 48457995 . C CA 0 PASS DP=39;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:12,9:2,1 +chr18 49292355 . G GACACAC 0 PASS DP=47;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:12,6:2,1 +chr18 49298795 . A T 0 PASS DP=63;GPV=1;SPV=0.0001375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,3:11,8 +chr18 54619461 . G T 0 PASS DP=79;GPV=1;SPV=0.0081488;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:18,2:21,7 +chr18 54739456 . C CA 0 PASS DP=40;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,10:5,9:4,1 +chr18 56262775 . G GTATATACATA 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,4:5,1 +chr18 56262778 . T C 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,4:4,1 +chr18 57393915 . AAGAAAGAAAAAGAAAG A 0 PASS DP=56;GPV=1;SPV=0.040114;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,6:15,3:5,3 +chr18 57949913 . A G 0 PASS DP=62;GPV=1;SPV=7.9781e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,6:10,8 +chr18 58115245 . C CT 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,6:6,2 +chr18 58480510 . CA C 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,6:3,4 +chr18 58905403 . C CT 0 PASS DP=26;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:5,7:1,2 +chr18 59248682 . G A 0 PASS DP=47;GPV=1;SPV=2.3802e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:4,12:3,5:1,7 +chr18 59879236 . C T 0 PASS DP=50;GPV=1;SPV=0.11202;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4 +chr18 62444492 . C CAAAAAAAAAA 0 PASS DP=68;GPV=1;SPV=0.007843;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,11:16,9:7,2 +chr18 62521989 . TAA T 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,6:4,2 +chr18 65500304 . AT A 0 PASS DP=55;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,5:6,3:7,2 +chr18 65696775 . CAAACCAA C 0 PASS DP=72;GPV=1;SPV=8.5397e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:11,7:16,8 +chr18 66453549 . T C 0 PASS DP=65;GPV=1;SPV=0.00015854;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,7:7,7 +chr18 66468026 . AT A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr18 66524569 . T TATATATATATAA 0 PASS DP=34;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,3:8,3 +chr18 67776316 . ACACACATCTATC A 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr18 68114184 . T TA 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:5,9:5,1 +chr18 68885588 . G A 0 PASS DP=51;GPV=1;SPV=0.00066023;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4 +chr18 69416181 . C G 0 PASS DP=29;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,3:5,3:0,0 +chr18 70416410 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.013387;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,6:3,1 +chr18 71265887 . C CACACACACACACACAT 0 PASS DP=65;GPV=1;SPV=0.043302;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,13:12,6:15,7 +chr18 74029253 . G A 0 PASS DP=17;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,4:1,2 +chr18 74263146 . C CA 0 PASS DP=45;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,8:10,6:3,2 +chr18 75988054 . A AAAT 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:20,4:13,2 +chr18 76545276 . G T 0 PASS DP=24;GPV=1;SPV=0.0013797;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,11:3,7:0,4 +chr18 77084428 . A G 0 PASS DP=28;GPV=1;SPV=0.053922;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:6,4:0,1 +chr18 77258636 . ATGG A 0 PASS DP=26;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,2:5,3 +chr18 77690521 . T C 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,2:2,2 +chr18 78513235 . A C 0 PASS DP=129;GPV=1;SPV=0.030951;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:38,6:28,3 +chr18 78818327 . TG T 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2 +chr18 78840400 . G A 0 PASS DP=32;GPV=1;SPV=0.018244;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,2:2,4 +chr18 79435356 . T G 0 PASS DP=55;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,1:14,4 +chr18 79732517 . T C 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr18 79742081 . AGAGGCCTGGGGGCAGCAGAGGAGGCATGAGGTG A 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,3:7,1 +chr18 80033994 . G A 0 PASS DP=27;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:1,3:7,1 +chr19 160613 . C A 0 PASS DP=66;GPV=1;SPV=0.052773;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:7,1:25,4 +chr19 274374 . CA C 0 PASS DP=29;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:3,7:3,4 +chr19 895257 . T TA 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,6:6,4 +chr19 962513 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.041461;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:7,5:10,2 +chr19 2321098 . GC G 0 PASS DP=64;GPV=1;SPV=0.053635;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:10,3:21,2 +chr19 2605507 . CT C 0 PASS DP=33;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:7,4:10,3 +chr19 3363275 . T A 0 PASS DP=22;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:2,1:1,2 +chr19 3954562 . C CT 0 PASS DP=32;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr19 4475891 . CT C 0 PASS DP=42;GPV=1;SPV=7.8301e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:8,5:3,10 +chr19 4568915 . C CA 0 PASS DP=44;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:9,7:4,2 +chr19 5324226 . C CA 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,4:1,0 +chr19 5409321 . A T 0 PASS DP=60;GPV=1;SPV=0.010783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,6:10,4 +chr19 6192071 . C CA 0 PASS DP=31;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:0,6:4,1 +chr19 6288169 . C CTTT 0 PASS DP=34;GPV=1;SPV=0.040535;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,7:6,1 +chr19 7036981 . T C 0 PASS DP=53;GPV=1;SPV=0.048297;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,1:10,6 +chr19 7037326 . G A 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr19 7152391 . A G 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,2:18,2 +chr19 7437635 . A ATTTCTTTTTT 0 PASS DP=54;GPV=1;SPV=0.025544;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:8,4:16,7 +chr19 7605147 . G GGTGTGTGTGTGTGTGTGT 0 PASS DP=49;GPV=1;SPV=0.036132;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:5,3:11,5 +chr19 7736445 . TTTCCTTCC T 0 PASS DP=55;GPV=1;SPV=0.0071642;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:6,2:13,12 +chr19 8235007 . C CTT 0 PASS DP=19;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:1,4:1,1 +chr19 8587333 . C CT 0 PASS DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:4,2:6,2 +chr19 8617496 . C T 0 PASS DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,3:8,9 +chr19 8774409 . G T 0 PASS DP=62;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,5:21,3:7,2 +chr19 8780062 . T C 0 PASS DP=77;GPV=1;SPV=0.073644;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:11,3:36,4 +chr19 9108117 . CTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,3:2,1 +chr19 9416663 . C CT 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,2:6,2 +chr19 9619920 . TC T 0 PASS DP=85;GPV=1;SPV=0.036334;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:25,4:19,2 +chr19 9877543 . T A 0 PASS DP=44;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,2:2,1:3,1 +chr19 10253470 . C A 0 PASS DP=35;GPV=1;SPV=0.026224;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:3,2:1,4 +chr19 10439982 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,8:7,2 +chr19 10860840 . C CA 0 PASS DP=40;GPV=1;SPV=0.036085;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:15,6:4,2 +chr19 11533899 . T TA 0 PASS DP=38;GPV=1;SPV=0.0061425;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:11,2:2,5 +chr19 11605080 . C CTT 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr19 11825791 . C CTTT 0 PASS DP=41;GPV=1;SPV=0.00504;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:6,6:7,1 +chr19 12506933 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1 +chr19 12602081 . C T 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:18,2:8,4 +chr19 13334593 . T G 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:2,2:6,3 +chr19 14689100 . G T 0 PASS DP=55;GPV=1;SPV=0.01933;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,5:11,3 +chr19 15088907 . CAGAT C 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,5:5,3 +chr19 15088982 . TG T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1 +chr19 15099150 . AAAGGG A 0 PASS DP=39;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:11,1:9,3 +chr19 16061298 . T TTTTTTTAAACAGGATC 0 PASS DP=43;GPV=1;SPV=0.00033903;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,8:4,4 +chr19 17031553 . C CGT 0 PASS DP=46;GPV=1;SPV=0.063391;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,5:11,1 +chr19 17370001 . T TA 0 PASS DP=47;GPV=1;SPV=0.040129;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:12,6:8,4 +chr19 17754131 . G C 0 PASS DP=81;GPV=1;SPV=3.9329e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,6:11,7 +chr19 17918501 . G A 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,2:11,2 +chr19 18222657 . TTCTCTCTCTCTC T 0 PASS DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:0,4:5,6 +chr19 18902360 . A C 0 PASS DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,5:9,7 +chr19 18937308 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.0008238;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,7:1,1 +chr19 20163916 . C T 0 PASS DP=47;GPV=1;SPV=0.010901;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,10:8,2 +chr19 20249584 . T TTC 0 PASS DP=44;GPV=1;SPV=0.037194;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:5,4:11,3 +chr19 21482642 . C CAAA 0 PASS DP=35;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:4,4:6,2 +chr19 21535437 . T C 0 PASS DP=40;GPV=1;SPV=0.29987;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,1:15,3 +chr19 21548710 . ATTTT A 0 PASS DP=30;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:7,3:4,2 +chr19 22783712 . C A 0 PASS DP=68;GPV=1;SPV=0.00035871;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:15,11:14,7 +chr19 22991841 . TG T 0 PASS DP=45;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,7:6,6 +chr19 23413237 . C CTT 0 PASS DP=35;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,4:5,3 +chr19 24400418 . C T 0 PASS DP=158;GPV=1;SPV=0.017809;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:72,22:32,14:40,8 +chr19 24402598 . ACT A 0 PASS DP=161;GPV=1;SPV=0.0096107;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:35,9:34,9 +chr19 24435868 . C G 0 PASS DP=299;GPV=1;SPV=0.031613;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:148,23:41,11:107,12 +chr19 24436165 . G C 0 PASS DP=81;GPV=1;SPV=0.082694;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:6,3:39,2 +chr19 24438581 . G A 0 PASS DP=151;GPV=1;SPV=0.042011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:35,7:40,9 +chr19 26389831 . A C 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr19 27354774 . T C 0 PASS DP=201;GPV=1;SPV=0.0043657;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:95,32:49,13:46,19 +chr19 28206805 . AAAGG A 0 PASS DP=38;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:2,2:6,5 +chr19 29151695 . G GAGAA 0 PASS DP=38;GPV=1;SPV=0.26815;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,3:9,2:9,1 +chr19 29423409 . A ATG 0 PASS DP=60;GPV=1;SPV=0.012239;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,6:7,3:9,3 +chr19 29426679 . GT G 0 PASS DP=51;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:8,6:11,4 +chr19 31354256 . G A 0 PASS DP=77;GPV=1;SPV=0.086665;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:24,3:19,2 +chr19 31530696 . G GA 0 PASS DP=53;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:6,9:13,1 +chr19 32399209 . G GA 0 PASS DP=36;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,8:3,7:2,1 +chr19 32511717 . T C 0 PASS DP=51;GPV=1;SPV=0.034367;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,4:9,1 +chr19 32591635 . G A 0 PASS DP=70;GPV=1;SPV=0.12674;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:16,4:26,1 +chr19 32591639 . C T 0 PASS DP=67;GPV=1;SPV=0.09386;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:15,5:25,1 +chr19 33618669 . C T 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr19 33876432 . C CAAAAAA 0 PASS DP=27;GPV=1;SPV=0.10733;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:6,5:4,1 +chr19 34101461 . C CA 0 PASS DP=53;GPV=1;SPV=0.055222;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:12,3:10,1 +chr19 36253979 . C G 0 PASS DP=72;GPV=1;SPV=0.0059495;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:20,5:15,5 +chr19 36281823 . G A 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr19 36281824 . A C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr19 36281826 . C CAA 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr19 36491329 . C G 0 PASS DP=64;GPV=1;SPV=0.040749;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,12:12,2 +chr19 37294646 . G A 0 PASS DP=1989;GPV=1;SPV=0.010233;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1137:1016,121:301,51:715,70 +chr19 38240318 . A C 0 PASS DP=42;GPV=1;SPV=0.0043101;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,4:5,3 +chr19 39102118 . T TCACACACACACA 0 PASS DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,2:8,4 +chr19 39121578 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:9,4:0,0 +chr19 39255782 . CT C 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1 +chr19 39794164 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,5:3,1 +chr19 39886594 . G C 0 PASS DP=81;GPV=1;SPV=0.061837;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,5:14,3:26,2 +chr19 40183967 . CA C 0 PASS DP=53;GPV=1;SPV=0.0054076;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:7,6:10,7 +chr19 40317715 . C CTGTTTTTTTTT 0 PASS DP=42;GPV=1;SPV=0.021089;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:10,6:5,5 +chr19 40418215 . CT C 0 PASS DP=52;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,8:0,1:4,7 +chr19 40695350 . G A 0 PASS DP=48;GPV=1;SPV=0.099229;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,1:11,4 +chr19 40781308 . AAATG A 0 PASS DP=45;GPV=1;SPV=0.0076667;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,4:2,3 +chr19 41060381 . A AAGAAAGATAGATAGATAGATAGAT 0 PASS DP=39;GPV=1;SPV=0.04669;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,7:13,3:5,4 +chr19 41103469 . C T 0 PASS DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,2:11,2 +chr19 41909699 . C T 0 PASS DP=59;GPV=1;SPV=0.010119;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:11,7:18,3 +chr19 42615273 . T A 0 PASS DP=52;GPV=1;SPV=0.0018992;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,5:12,5 +chr19 42816574 . T C 0 PASS DP=79;GPV=1;SPV=0.04391;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:24,6:18,5 +chr19 43393074 . G GGGAAGGAAGGAAGGAA 0 PASS DP=45;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:10,5:3,2 +chr19 43568977 . TA T 0 PASS DP=44;GPV=1;SPV=0.001098;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:7,8:5,7 +chr19 43709954 . A T 0 PASS DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,3:8,3 +chr19 43786294 . C T 0 PASS DP=66;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:7,2:3,1:4,1 +chr19 44016948 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2 +chr19 44719936 . C CACACACAT 0 PASS DP=19;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,3:0,0:0,3 +chr19 44764193 . AG A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,4:1,0 +chr19 45325902 . G T 0 PASS DP=49;GPV=1;SPV=0.11976;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,5:12,4:4,1 +chr19 46129307 . TTG T 0 PASS DP=50;GPV=1;SPV=0.038543;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,10:9,3 +chr19 47051638 . A T 0 PASS DP=66;GPV=1;SPV=0.0048053;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,11:15,3 +chr19 47368298 . CT C 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr19 47431677 . AAAAC A 0 PASS DP=30;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1 +chr19 47579397 . T G 0 PASS DP=51;GPV=1;SPV=0.049139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,4:9,2 +chr19 47774924 . A AT 0 PASS DP=31;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:3,5:6,2 +chr19 47938818 . A C 0 PASS DP=20;GPV=1;SPV=0.0032151;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,6:0,1 +chr19 47963898 . TTTTCTTTTC T 0 PASS DP=48;GPV=1;SPV=0.06407;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2 +chr19 48543966 . A AGC 0 PASS DP=28;GPV=1;SPV=0.20757;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:1,0:13,3 +chr19 48684183 . G GA 0 PASS DP=29;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:8,6:3,2 +chr19 48729709 . CT C 0 PASS DP=34;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,5:2,2:0,3 +chr19 49742496 . C CT 0 PASS DP=36;GPV=1;SPV=0.02043;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4 +chr19 50133090 . C T 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:17,1:7,4 +chr19 50172889 . GA G 0 PASS DP=38;GPV=1;SPV=0.0041488;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3 +chr19 50277917 . CA C 0 PASS DP=45;GPV=1;SPV=0.02275;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,6:10,3 +chr19 50641888 . A T 0 PASS DP=61;GPV=1;SPV=0.0019875;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,5:8,3 +chr19 50786867 . C T 0 PASS DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,6:5,6 +chr19 50918309 . T TTAGA 0 PASS DP=58;GPV=1;SPV=0.019608;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,11:14,7:11,4 +chr19 51405410 . T C 0 PASS DP=45;GPV=1;SPV=0.28173;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:11,4:7,3:4,1 +chr19 51854496 . A ATTTTTTT 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2 +chr19 52508893 . ATTT A 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,4:4,3 +chr19 52695639 . CT C 0 PASS DP=27;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:4,3:4,4 +chr19 53111340 . C CTT 0 PASS DP=31;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:9,5:2,1 +chr19 53482722 . T G 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,3:6,3 +chr19 53782098 . CTCTTT C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr19 53913785 . T TA 0 PASS DP=34;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:7,7:2,2 +chr19 54004334 . TTTGTGTGTGTGTGTGTG T 0 PASS DP=34;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr19 54894564 . T C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr19 55178753 . ATTTT A 0 PASS DP=22;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:2,3:4,1 +chr19 55270937 . C T 0 PASS DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,9:12,3 +chr19 55463403 . G A 0 PASS DP=70;GPV=1;SPV=0.0010937;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:15,6:16,7 +chr19 55768578 . G A 0 PASS DP=75;GPV=1;SPV=0.10111;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:28,5:18,1 +chr19 55853883 . ATCTCTT A 0 PASS DP=58;GPV=1;SPV=0.09513;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,1:17,4 +chr19 55853907 . TTCTC T 0 PASS DP=49;GPV=1;SPV=0.089104;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:12,1:14,4 +chr19 56037693 . CA C 0 PASS DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,3:3,5 +chr19 56218050 . C CTTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:8,4:5,1 +chr19 56850512 . G C 0 PASS DP=91;GPV=1;SPV=0.00021701;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:22,6:18,9 +chr19 56947032 . A G 0 PASS DP=18;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:2,1:2,1 +chr19 56973386 . A G 0 PASS DP=40;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,9:5,5:5,4 +chr19 57104244 . G GGTTTTGTTTT 0 PASS DP=60;GPV=1;SPV=0.025815;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,8:10,4:9,4 +chr19 57843567 . G T 0 PASS DP=27;GPV=1;SPV=0.032869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:2,1:2,3 +chr19 58037161 . T C 0 PASS DP=59;GPV=1;SPV=0.0016548;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:11,6:14,6 +chr19 58427343 . C CTT 0 PASS DP=45;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,8:1,1:14,7 +chr19 58427348 . TC T 0 PASS DP=40;GPV=1;SPV=0.26877;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,6:2,2:11,4 +chr19 58427358 . C CTCT 0 PASS DP=37;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:1,1:15,4 +chr19 58427361 . T C 0 PASS DP=43;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:4,1:19,3 +chr19 58605246 . T C 0 PASS DP=37;GPV=1;SPV=0.014514;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,3:8,6 +chr2 238259 . T TTG 0 PASS DP=42;GPV=1;SPV=0.0044123;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,15:6,9:2,6 +chr2 583086 . GGCC G 0 PASS DP=57;GPV=1;SPV=0.029601;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,4:16,9 +chr2 597535 . C G 0 PASS DP=85;GPV=1;SPV=0.0089356;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:20,3:23,6 +chr2 739644 . G GA 0 PASS DP=59;GPV=1;SPV=0.0049268;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:13,11:11,8 +chr2 750206 . G GTTTATTTTATTTTATTTTAT 0 PASS DP=51;GPV=1;SPV=0.056363;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,8:13,5:15,3 +chr2 797194 . G A 0 PASS DP=81;GPV=1;SPV=0.055492;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:27,3:18,3 +chr2 939932 . C CTA 0 PASS DP=71;GPV=1;SPV=0.033642;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:19,4:22,5 +chr2 1027475 . A G 0 PASS DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,4:12,4 +chr2 1143750 . G A 0 PASS DP=56;GPV=1;SPV=0.24882;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,3:17,1 +chr2 1255843 . AAT A 0 PASS DP=35;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:7,3:12,2 +chr2 1262694 . C A 0 PASS DP=39;GPV=1;SPV=0.13105;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:8,2:13,3 +chr2 1323547 . A G 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,1:16,4 +chr2 1509725 . G GCCCACCCTCTTTTTTCAGGGATAC 0 PASS DP=37;GPV=1;SPV=0.17449;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:11,2:10,3 +chr2 1706834 . C T 0 PASS DP=55;GPV=1;SPV=0.035448;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:11,9:15,3 +chr2 1780382 . T C 0 PASS DP=28;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1 +chr2 2004320 . G T 0 PASS DP=27;GPV=1;SPV=0.062714;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3 +chr2 2561206 . C CTGTG 0 PASS DP=73;GPV=1;SPV=0.016345;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,2:16,12 +chr2 2953278 . T C 0 PASS DP=68;GPV=1;SPV=0.0039495;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:20,7:13,5 +chr2 3049625 . A AATATATATAT 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2 +chr2 3775110 . CTGAGCTAGGCAGCTGTGGCTG C 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,2:15,2 +chr2 4260661 . TTA T 0 PASS DP=40;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,14:4,6:3,8 +chr2 4926342 . TTTTA T 0 PASS DP=84;GPV=1;SPV=0.019292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:12,5:24,11 +chr2 4974165 . GAGGGTGTTT G 0 PASS DP=39;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,2:6,6 +chr2 5561566 . T C 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,2:14,3 +chr2 5652595 . G C 0 PASS DP=90;GPV=1;SPV=7.0026e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:16,11:15,5 +chr2 6420993 . CAAA C 0 PASS DP=39;GPV=1;SPV=0.016738;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,10:4,2 +chr2 6651481 . CAAAA C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chr2 7165540 . C CAGATAGATAGATAGAT 0 PASS DP=56;GPV=1;SPV=0.002598;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,6:10,11 +chr2 7261995 . ATT A 0 PASS DP=46;GPV=1;SPV=0.014003;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,8:5,5 +chr2 8092204 . GAAAGAAAGAAAGA G 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:19,2:5,2 +chr2 8324335 . G C 0 PASS DP=77;GPV=1;SPV=0.00017063;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:12,11:21,7 +chr2 9254298 . A G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5 +chr2 9499113 . C T 0 PASS DP=44;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,4:6,3:6,1 +chr2 9989124 . G A 0 PASS DP=84;GPV=1;SPV=0.010163;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:39,21:21,9:18,12 +chr2 9998827 . T C 0 PASS DP=43;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:10,1:1,4 +chr2 10181750 . CTCTCTTTTT C 0 PASS DP=26;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,5:5,1 +chr2 10291618 . T C 0 PASS DP=52;GPV=1;SPV=0.1356;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:11,3:21,3 +chr2 10809668 . A AAC 0 PASS DP=32;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:7,5:2,4 +chr2 10902465 . T C 0 PASS DP=97;GPV=1;SPV=0.01018;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:26,7:15,2 +chr2 12772913 . T A 0 PASS DP=60;GPV=1;SPV=0.069855;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:21,3:14,4 +chr2 14073665 . C CT 0 PASS DP=51;GPV=1;SPV=0.0086143;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:12,8:8,5 +chr2 14567980 . G C 0 PASS DP=67;GPV=1;SPV=0.1371;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:17,6:9,4:8,2 +chr2 16018180 . C CCT 0 PASS DP=46;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:1,2:0,0:1,2 +chr2 16832369 . CT C 0 PASS DP=30;GPV=1;SPV=0.0067079;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,10:2,9:1,1 +chr2 17477961 . G GA 0 PASS DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,4:3,1 +chr2 17530584 . CAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,4:4,1 +chr2 18050699 . A AT 0 PASS DP=43;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,15:10,11:7,4 +chr2 18755763 . T A 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2 +chr2 19070434 . G GTTT 0 PASS DP=48;GPV=1;SPV=0.10396;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,5:20,4:5,1 +chr2 20102735 . A G 0 PASS DP=57;GPV=1;SPV=0.047734;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:23,4:8,3 +chr2 21286995 . AT A 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,2:7,12 +chr2 21353165 . G GGTGTGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.004133;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:5,8:5,4 +chr2 21895316 . G C 0 PASS DP=79;GPV=1;SPV=5.242e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:13,11:15,10 +chr2 22517357 . ATATG A 0 PASS DP=50;GPV=1;SPV=0.057585;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,7:13,1:5,6 +chr2 22743819 . GGATAGATAGATAGATAGATAGATAGATAGATA G 0 PASS DP=51;GPV=1;SPV=0.069354;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,5:16,3:8,2 +chr2 22747322 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2 +chr2 23120689 . G A 0 PASS DP=77;GPV=1;SPV=0.10244;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:26,8:15,7:11,1 +chr2 23640965 . G T 0 PASS DP=76;GPV=1;SPV=0.093123;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:21,3:25,3 +chr2 24106316 . C CTT 0 PASS DP=30;GPV=1;SPV=0.29231;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:16,4:1,0 +chr2 25632192 . C A 0 PASS DP=48;GPV=1;SPV=0.083396;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,6:16,1:4,5 +chr2 25661744 . A T 0 PASS DP=81;GPV=1;SPV=2.0987e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:32,22:17,13:15,9 +chr2 25884694 . T TA 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,8:4,1 +chr2 28334847 . C T 0 PASS DP=87;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:20,5:11,4:9,1 +chr2 28511788 . C CTTTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:11,3:7,1 +chr2 30143186 . CA C 0 PASS DP=42;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,9:5,1 +chr2 30712644 . CT C 0 PASS DP=45;GPV=1;SPV=0.17119;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,8:18,4:2,4 +chr2 32200845 . T A 0 PASS DP=74;GPV=1;SPV=0.15649;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:29,2:20,4 +chr2 32271536 . TAG T 0 PASS DP=38;GPV=1;SPV=0.2607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,5:12,4:11,1 +chr2 32389989 . A T 0 PASS DP=73;GPV=1;SPV=0.00014297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,8:16,6 +chr2 32646557 . G GT 0 PASS DP=43;GPV=1;SPV=0.011343;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,16:8,10:6,6 +chr2 33244860 . T TTATCTATCTATCTATC 0 PASS DP=63;GPV=1;SPV=0.082021;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,3:12,4 +chr2 33428495 . CTTTT C 0 PASS DP=36;GPV=1;SPV=0.20705;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:7,4:9,1 +chr2 33709749 . A ATT 0 PASS DP=36;GPV=1;SPV=0.048713;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:7,9:6,1 +chr2 34292459 . T C 0 PASS DP=61;GPV=1;SPV=0.080979;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:11,3:24,3 +chr2 35418835 . AATTG A 0 PASS DP=39;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:12,1:6,3 +chr2 37153339 . T C 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,3:5,3 +chr2 37585207 . C A 0 PASS DP=55;GPV=1;SPV=0.0090365;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:15,11:6,7:9,4 +chr2 38403856 . A G 0 PASS DP=43;GPV=1;SPV=0.0042182;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:7,4:7,10 +chr2 39044866 . A G 0 PASS DP=73;GPV=1;SPV=0.08134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:20,3:20,2 +chr2 39773575 . AT A 0 PASS DP=51;GPV=1;SPV=0.069699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:16,3:11,3 +chr2 39841978 . A G 0 PASS DP=62;GPV=1;SPV=0.11483;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:15,4:23,2 +chr2 39872346 . ATTTCTTTCTTTCTTTC A 0 PASS DP=47;GPV=1;SPV=0.0035488;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:2,1:12,11 +chr2 40219875 . A AT 0 PASS DP=24;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,4:4,1 +chr2 42076342 . A G 0 PASS DP=48;GPV=1;SPV=0.038709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:21,5:2,1 +chr2 42076351 . GAAAGAAAA G 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:23,5:2,1 +chr2 42717127 . GTT G 0 PASS DP=30;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1 +chr2 43274998 . C T 0 PASS DP=51;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,6:7,3:5,3 +chr2 43635551 . G A 0 PASS DP=68;GPV=1;SPV=0.03639;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:9,2:23,7 +chr2 43724370 . T A 0 PASS DP=78;GPV=1;SPV=6.196e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:19,32:6,16:13,16 +chr2 43754869 . C CTT 0 PASS DP=32;GPV=1;SPV=0.024674;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,5:6,4 +chr2 43980553 . C CA 0 PASS DP=49;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,5:19,2:5,3 +chr2 44113489 . A C 0 PASS DP=44;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,2:2,1:1,1 +chr2 44125392 . C CTT 0 PASS DP=31;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:6,5:5,2 +chr2 44410247 . AT A 0 PASS DP=33;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,5:3,3:3,2 +chr2 44542496 . T TACAC 0 PASS DP=51;GPV=1;SPV=0.035453;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,10:20,9:5,1 +chr2 44828126 . A ATT 0 PASS DP=46;GPV=1;SPV=0.0021156;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,8:12,3 +chr2 46855219 . C CCT 0 PASS DP=44;GPV=1;SPV=0.015711;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,6:5,2 +chr2 46978562 . T TAAAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,5:6,3 +chr2 47288788 . C G 0 PASS DP=66;GPV=1;SPV=0.0099736;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:20,4:6,2 +chr2 47290841 . CA C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,9:2,1 +chr2 47323077 . T C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,3:9,1 +chr2 47323092 . T C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr2 48177831 . C CA 0 PASS DP=41;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:14,2:4,2 +chr2 49110400 . C A 0 PASS DP=57;GPV=1;SPV=0.025962;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,2:13,8 +chr2 49604146 . A AACACAC 0 PASS DP=68;GPV=1;SPV=0.0034722;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,15:15,7:13,8 +chr2 50239662 . GTATATATATATATA G 0 PASS DP=19;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,3:0,1 +chr2 50984134 . A ATT 0 PASS DP=36;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:6,2:10,2 +chr2 51504653 . C T 0 PASS DP=56;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:8,7:3,4:5,3 +chr2 51854925 . G A 0 PASS DP=49;GPV=1;SPV=0.024419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,4:10,6 +chr2 51854926 . T C 0 PASS DP=50;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6 +chr2 52275815 . C CGTGTGTGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=61;GPV=1;SPV=0.16269;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:19,5:20,1 +chr2 52320713 . C G 0 PASS DP=59;GPV=1;SPV=0.024823;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,3:9,8 +chr2 52581829 . CAAAAAAAAAAAAAAAA C 0 PASS DP=36;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:8,5:8,4 +chr2 52585110 . T C 0 PASS DP=64;GPV=1;SPV=4.2445e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:16,27:6,14:10,13 +chr2 53393256 . C CTATATATA 0 PASS DP=40;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:6,6:3,5 +chr2 53718203 . G A 0 PASS DP=51;GPV=1;SPV=4.2116e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,24:8,17:6,7 +chr2 54058837 . T G 0 PASS DP=69;GPV=1;SPV=0.015228;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:25,5:12,5 +chr2 55367528 . G GTTTTTTTTTTTTTTGTTT 0 PASS DP=25;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,7:2,1 +chr2 56257146 . C CT 0 PASS DP=82;GPV=1;SPV=0.024868;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:27,3:18,5 +chr2 56617423 . GTA G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1 +chr2 56617441 . A G 0 PASS DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:10,4:4,1 +chr2 56617448 . TAC T 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,4:3,1 +chr2 58531968 . C T 0 PASS DP=64;GPV=1;SPV=0.11157;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,3:17,2 +chr2 58973678 . CT C 0 PASS DP=39;GPV=1;SPV=0.0077789;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,9:8,3 +chr2 59401041 . G GAAGAA 0 PASS DP=34;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:12,3:2,1 +chr2 59590866 . C CTTT 0 PASS DP=37;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,7:5,2 +chr2 60074575 . T TTTCCTTCC 0 PASS DP=57;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,16:10,10:8,6 +chr2 61104483 . A C 0 PASS DP=61;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:3,1:1,1 +chr2 61715319 . C CTT 0 PASS DP=36;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:5,8:2,2 +chr2 62115832 . T TTTCTTTC 0 PASS DP=52;GPV=1;SPV=0.044964;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,12:7,2:13,10 +chr2 62562855 . T C 0 PASS DP=77;GPV=1;SPV=0.021815;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:29,6:15,4 +chr2 63651474 . G C 0 PASS DP=63;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:11,5:8,1:3,4 +chr2 64589944 . TGGGGG T 0 PASS DP=31;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,11:3,10:0,1 +chr2 64802633 . GAA G 0 PASS DP=43;GPV=1;SPV=0.10445;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:17,3:8,4 +chr2 65339112 . CG C 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr2 65339119 . T G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,3:12,2 +chr2 65363239 . CAA C 0 PASS DP=46;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:15,9:5,4 +chr2 65407245 . C CTTTTTTTTT 0 PASS DP=40;GPV=1;SPV=0.077118;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3 +chr2 65579406 . G T 0 PASS DP=100;GPV=1;SPV=0.00011122;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:17,5:28,12 +chr2 68173576 . A AT 0 PASS DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,6:5,4 +chr2 68246067 . CTT C 0 PASS DP=23;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,6:6,1 +chr2 68621704 . G GGGAAGGAA 0 PASS DP=45;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,5:11,4:8,1 +chr2 69395436 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:8,2:4,3 +chr2 71411446 . T A 0 PASS DP=68;GPV=1;SPV=0.035299;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:23,2:15,6 +chr2 74707505 . A T 0 PASS DP=78;GPV=1;SPV=0.10307;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,7:11,1:19,6 +chr2 75813568 . C CT 0 PASS DP=59;GPV=1;SPV=0.14969;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,2:18,3 +chr2 76299016 . TCACACACACA T 0 PASS DP=52;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:2,1:2,1 +chr2 76675240 . CT C 0 PASS DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,3:5,3 +chr2 76703554 . C T 0 PASS DP=36;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,6:6,6 +chr2 76974139 . TAC T 0 PASS DP=47;GPV=1;SPV=0.013698;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,4:10,5 +chr2 76974155 . CAT C 0 PASS DP=42;GPV=1;SPV=0.049965;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:4,3:15,2 +chr2 77091680 . T G 0 PASS DP=78;GPV=1;SPV=0.028327;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:12,2:23,10 +chr2 77178784 . A T 0 PASS DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:21,1:16,4 +chr2 78371002 . T G 0 PASS DP=43;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1 +chr2 78880794 . C T 0 PASS DP=68;GPV=1;SPV=0.00051824;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:18,8:11,7 +chr2 79081401 . G C 0 PASS DP=68;GPV=1;SPV=0.00034436;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:13,10:16,9 +chr2 79501965 . C CTT 0 PASS DP=30;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,4:6,1 +chr2 81224895 . T TAAA 0 PASS DP=28;GPV=1;SPV=0.32408;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr2 81976851 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:1,2:3,2 +chr2 82868644 . CT C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr2 82868649 . T C 0 PASS DP=35;GPV=1;SPV=0.0036253;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2 +chr2 85410864 . T G 0 PASS DP=55;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:2,1:12,3 +chr2 85417477 . C CT 0 PASS DP=27;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:7,5:0,0 +chr2 85563192 . AT A 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,2:13,2 +chr2 86195416 . G C 0 PASS DP=90;GPV=1;SPV=0.00087116;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:26,9:18,6 +chr2 86368498 . GA G 0 PASS DP=28;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:0,4:0,4:0,0 +chr2 86424227 . G C 0 PASS DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:6,10:20,4 +chr2 87177743 . C T 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3 +chr2 87261110 . C T 0 PASS DP=77;GPV=1;SPV=0.040649;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:9,1:27,7 +chr2 87361199 . T C 0 PASS DP=130;GPV=1;SPV=0.036213;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:68,9:33,5:35,4 +chr2 87414607 . A C 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:12,6:6,2 +chr2 87688887 . TA T 0 PASS DP=33;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,7:3,2 +chr2 87706870 . CT C 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1 +chr2 87870077 . T C 0 PASS DP=69;GPV=1;SPV=0.030159;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,5:11,2 +chr2 87973479 . C A 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2 +chr2 89134598 . A AT 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2 +chr2 90271018 . C T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr2 90356801 . T C 0 PASS DP=141;GPV=1;SPV=0.00099512;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,15:30,11:35,4 +chr2 91427296 . C T 0 PASS DP=181;GPV=1;SPV=0.042733;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:90,21:46,16:44,5 +chr2 91428718 . A G 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,3:11,1 +chr2 91523483 . A T 0 PASS DP=65;GPV=1;SPV=0.0055662;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,12:13,4:6,8 +chr2 91523498 . G GGTGGCTTC 0 PASS DP=89;GPV=1;SPV=0.010388;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,6:16,3:20,3 +chr2 91785317 . C G 0 PASS DP=148;GPV=1;SPV=0.034685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:68,14:42,9:26,5 +chr2 91880349 . GTCAGATCT G 0 PASS DP=128;GPV=1;SPV=0.00074948;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:26,8:32,3 +chr2 92248969 . C T 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:34,2:1,3 +chr2 92262987 . C T 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:8,3:24,1 +chr2 92330480 . G T 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,1:6,6 +chr2 92353193 . T A 0 PASS DP=459;GPV=1;SPV=0.024517;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:277:248,29:72,6:176,23 +chr2 92353805 . C T 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:0,2:23,3 +chr2 92398925 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr2 92471310 . A C 0 PASS DP=68;GPV=1;SPV=0.048399;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:29,7:1,0 +chr2 92758805 . C A 0 PASS DP=50;GPV=1;SPV=0.069699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:21,4:6,2 +chr2 92790806 . T G 0 PASS DP=169;GPV=1;SPV=0.016861;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:86,13:22,3:64,10 +chr2 92814334 . T C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr2 92889070 . T A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,0:12,4 +chr2 92909789 . A T 0 PASS DP=39;GPV=1;SPV=0.33319;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:2,0:24,4 +chr2 92948033 . C A 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:20,4:8,2 +chr2 92970138 . A C 0 PASS DP=45;GPV=1;SPV=0.011302;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,2:11,7 +chr2 93179406 . T C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr2 93285132 . A G 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,1:14,3 +chr2 93480292 . T G 0 PASS DP=54;GPV=1;SPV=0.048788;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,5:8,3 +chr2 93567150 . A G 0 PASS DP=85;GPV=1;SPV=0.037983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:20,1:20,7 +chr2 93567311 . C T 0 PASS DP=52;GPV=1;SPV=0.0069073;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:4,1:20,10 +chr2 93587754 . C T 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,1:12,3 +chr2 93594667 . C G 0 PASS DP=85;GPV=1;SPV=0.046341;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:23,6:14,3 +chr2 93641679 . A C 0 PASS DP=34;GPV=1;SPV=0.25735;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:18,3:1,0 +chr2 93672946 . T C 0 PASS DP=49;GPV=1;SPV=0.034525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:2,1:16,3 +chr2 93852825 . A C 0 PASS DP=48;GPV=1;SPV=0.083225;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:6,4:19,1 +chr2 93953668 . G C 0 PASS DP=168;GPV=1;SPV=0.018672;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:89,14:10,7:79,7 +chr2 94141721 . G A 0 PASS DP=38;GPV=1;SPV=0.031109;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,1:5,6 +chr2 94286439 . T C 0 PASS DP=416;GPV=1;SPV=0.016109;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:212,30:87,15:125,15 +chr2 94636668 . A C 0 PASS DP=70;GPV=1;SPV=0.00064075;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,5:16,5 +chr2 95041163 . G C 0 PASS DP=70;GPV=1;SPV=4.1656e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:13,9:3,6 +chr2 95291901 . CTTAAATATATATATATACGTACATATATTTA C 0 PASS DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,3:11,1 +chr2 96779508 . C CA 0 PASS DP=41;GPV=1;SPV=0.0020026;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,12:7,10:3,2 +chr2 97221605 . A G 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:15,3:10,3 +chr2 97793993 . CAA C 0 PASS DP=20;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,6:2,5:1,1 +chr2 97800595 . C CAAAAAAAAA 0 PASS DP=31;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,8:2,6:1,2 +chr2 98031629 . G C 0 PASS DP=61;GPV=1;SPV=0.0023617;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,11:9,5:6,6 +chr2 99510713 . G A 0 PASS DP=50;GPV=1;SPV=0.019592;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,4:11,4 +chr2 99643055 . A AT 0 PASS DP=36;GPV=1;SPV=0.020897;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,6:7,4 +chr2 99648934 . C T 0 PASS DP=42;GPV=1;SPV=0.14559;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,6:10,1:13,5 +chr2 99716882 . C CA 0 PASS DP=59;GPV=1;SPV=0.014854;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,6:10,8 +chr2 101678129 . G A 0 PASS DP=43;GPV=1;SPV=0.16851;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,3:11,2:8,1 +chr2 104882243 . A AT 0 PASS DP=45;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,12:3,7:4,5 +chr2 105249282 . C CA 0 PASS DP=33;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2 +chr2 105678576 . TTCCTTCCCGTGTTAGCTCGGTCA T 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,6:7,4 +chr2 106451304 . T A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,3:18,1 +chr2 106466890 . G A 0 PASS DP=26;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr2 108769916 . C A 0 PASS DP=65;GPV=1;SPV=0.00047582;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:10,5:17,10 +chr2 109066559 . C G 0 PASS DP=72;GPV=1;SPV=0.0011061;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:13,4:14,5 +chr2 109075890 . T C 0 PASS DP=60;GPV=1;SPV=1.2423e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,7:6,5 +chr2 109794608 . C CGGCCG 0 PASS DP=27;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,4:1,0 +chr2 110159886 . A C 0 PASS DP=58;GPV=1;SPV=0.037081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,2:13,3 +chr2 110318236 . C A 0 PASS DP=37;GPV=1;SPV=0.032095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1 +chr2 110360672 . T G 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr2 110619926 . G A 0 PASS DP=82;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:27,1:20,6 +chr2 111284730 . T C 0 PASS DP=56;GPV=1;SPV=0.015187;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,6:10,7 +chr2 111285290 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr2 111757049 . GAAGA G 0 PASS DP=32;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:6,3:4,1 +chr2 112433207 . ACC A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,1:14,3 +chr2 112983898 . G A 0 PASS DP=68;GPV=1;SPV=0.025222;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,2:14,4 +chr2 113427302 . A T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 113559179 . G A 0 PASS DP=93;GPV=1;SPV=0.01507;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:42,19:25,8:17,11 +chr2 113584515 . C T 0 PASS DP=93;GPV=1;SPV=0.015143;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,3:20,8 +chr2 113598180 . A ACCCTGG 0 PASS DP=169;GPV=1;SPV=0.03089;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:48,6:28,5 +chr2 113615278 . C A 0 PASS DP=66;GPV=1;SPV=0.021983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:5,7:19,2 +chr2 113615483 . A G 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3 +chr2 113741338 . C T 0 PASS DP=60;GPV=1;SPV=1.7634e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:15,27:3,18:12,9 +chr2 113770215 . T A 0 PASS DP=31;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:3,5:3,2 +chr2 113949377 . C CA 0 PASS DP=27;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr2 115693550 . C A 0 PASS DP=78;GPV=1;SPV=8.4931e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:14,8:18,10 +chr2 116583705 . A G 0 PASS DP=60;GPV=1;SPV=0.043456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:9,2:19,3 +chr2 116887745 . AGTGTGTGTGT A 0 PASS DP=34;GPV=1;SPV=0.00081085;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:1,4:2,6 +chr2 117750541 . C T 0 PASS DP=35;GPV=1;SPV=0.006031;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:6,5:4,7 +chr2 118895755 . C CTT 0 PASS DP=36;GPV=1;SPV=0.00040256;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:3,6:6,5 +chr2 119519825 . AAAG A 0 PASS DP=29;GPV=1;SPV=0.0029985;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,7:3,1 +chr2 120886159 . AGTGTGTGTGT A 0 PASS DP=28;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,4:7,3 +chr2 120945957 . T TCACACACACACA 0 PASS DP=36;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:7,2:2,6 +chr2 121134596 . G GGTGT 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr2 122220081 . C CA 0 PASS DP=36;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,6:4,1 +chr2 122568073 . G C 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,6:14,4 +chr2 123494750 . C T 0 PASS DP=65;GPV=1;SPV=5.2547e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:17,26:7,14:10,12 +chr2 124029475 . C T 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,3:12,7 +chr2 124232827 . G A 0 PASS DP=70;GPV=1;SPV=0.00036759;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,7:13,5 +chr2 124419896 . T TTTTC 0 PASS DP=43;GPV=1;SPV=0.061797;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:7,2:15,4 +chr2 124571525 . TTC T 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,2:10,2 +chr2 124956034 . G T 0 PASS DP=69;GPV=1;SPV=0.003619;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:11,3:17,5 +chr2 125739694 . T TC 0 PASS DP=46;GPV=1;SPV=0.036268;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,2:10,9 +chr2 126737262 . T TGATA 0 PASS DP=52;GPV=1;SPV=0.039955;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:5,3:11,4 +chr2 127787999 . T G 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1 +chr2 127788000 . T C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,3:3,1 +chr2 128221306 . G T 0 PASS DP=75;GPV=1;SPV=0.00021386;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:19,9:9,3 +chr2 130129973 . G C 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,1:2,4 +chr2 130216099 . T C 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:17,5:8,1 +chr2 130762170 . G T 0 PASS DP=81;GPV=1;SPV=0.025682;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:15,4:20,1 +chr2 131023074 . C A 0 PASS DP=32;GPV=1;SPV=0.32312;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:14,1:5,3 +chr2 131223219 . G T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2 +chr2 131455425 . C CTT 0 PASS DP=28;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,2:7,2 +chr2 131688504 . CT C 0 PASS DP=63;GPV=1;SPV=0.0052563;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,8:12,1 +chr2 131765473 . AGTCCCCAGGTTGATACCTG A 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,1:12,3 +chr2 131912638 . A G 0 PASS DP=76;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:18,7:13,1 +chr2 132029651 . A ACACAC 0 PASS DP=53;GPV=1;SPV=0.033527;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:14,5:6,5 +chr2 132048452 . C A 0 PASS DP=47;GPV=1;SPV=0.28797;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:3,1:11,3 +chr2 132049441 . G A 0 PASS DP=117;GPV=1;SPV=0.017552;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:64,8:36,7:28,1 +chr2 132258640 . A G 0 PASS DP=66;GPV=1;SPV=0.00017421;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,3:12,10 +chr2 132264069 . A ATAAATAAATAAATAAATAAATAAAT 0 PASS DP=38;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:10,2:9,2 +chr2 133567659 . G C 0 PASS DP=64;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:9,2:8,2 +chr2 133729208 . G A 0 PASS DP=83;GPV=1;SPV=0.00036473;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:16,6:19,7 +chr2 133948596 . G T 0 PASS DP=65;GPV=1;SPV=0.0048347;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:15,2:10,5 +chr2 134372186 . C A 0 PASS DP=51;GPV=1;SPV=0.016436;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,2:9,4 +chr2 134759427 . A G 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,7:7,3 +chr2 135881598 . T C 0 PASS DP=66;GPV=1;SPV=0.001019;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,2:13,6 +chr2 137699040 . G C 0 PASS DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,5:14,5 +chr2 138449450 . T C 0 PASS DP=65;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:4,3:4,1:0,2 +chr2 139062024 . T C 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:16,2:9,2 +chr2 139277983 . C A 0 PASS DP=80;GPV=1;SPV=0.00023167;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:14,3:18,10 +chr2 140107109 . T A 0 PASS DP=57;GPV=1;SPV=0.016569;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,8:10,4:17,4 +chr2 140600767 . GT G 0 PASS DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1 +chr2 142478952 . G GT 0 PASS DP=29;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:2,8:6,3 +chr2 142572908 . A AATG 0 PASS DP=42;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,12:3,8:4,4 +chr2 142824679 . A G 0 PASS DP=55;GPV=1;SPV=0.0055971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,9:12,4 +chr2 143318509 . CTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,4:2,2 +chr2 143823230 . A T 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,6:11,1 +chr2 144636481 . C CT 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,4:1,0 +chr2 145609330 . C CT 0 PASS DP=22;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:3,5:1,1 +chr2 146056035 . GAAA G 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1 +chr2 146056082 . AAAG A 0 PASS DP=47;GPV=1;SPV=0.033555;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,3:7,1 +chr2 147049309 . A G 0 PASS DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,5:8,4 +chr2 147105609 . G C 0 PASS DP=47;GPV=1;SPV=0.013649;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4 +chr2 147820226 . CAAAAA C 0 PASS DP=50;GPV=1;SPV=0.016596;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,8:7,2 +chr2 148647619 . CT C 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:1,3:4,1 +chr2 149435613 . T A 0 PASS DP=85;GPV=1;SPV=2.8454e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:13,10:18,5 +chr2 149965864 . C A 0 PASS DP=70;GPV=1;SPV=0.0061653;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:20,5:15,6 +chr2 150025327 . AAT A 0 PASS DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,5:6,5 +chr2 150249947 . G A 0 PASS DP=54;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,4:9,3:8,1 +chr2 150636654 . T G 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,2:16,3 +chr2 150930638 . A T 0 PASS DP=31;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,3:1,2:0,1 +chr2 151005494 . A G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,2:13,2 +chr2 151132476 . A AAGGGAGAG 0 PASS DP=54;GPV=1;SPV=0.11921;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,3:20,2 +chr2 152915501 . T TACACAC 0 PASS DP=36;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,3:2,5 +chr2 153074663 . G C 0 PASS DP=48;GPV=1;SPV=0.00014841;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:3,12:9,7 +chr2 154299455 . C CT 0 PASS DP=34;GPV=1;SPV=0.013278;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:6,8:4,2 +chr2 154862380 . G C 0 PASS DP=63;GPV=1;SPV=0.054281;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,6:9,4:10,2 +chr2 155334085 . A G 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,3:8,1 +chr2 158895384 . C CT 0 PASS DP=27;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,8:3,1 +chr2 159025189 . T TTTTCTTTCTTTC 0 PASS DP=45;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,5:3,1:8,4 +chr2 159075417 . A C 0 PASS DP=43;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1 +chr2 159802428 . ATT A 0 PASS DP=24;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,2:3,3 +chr2 160410221 . CAA C 0 PASS DP=35;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:6,6:11,1 +chr2 162748939 . C CCT 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr2 163525725 . ATT A 0 PASS DP=32;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:6,5:3,3 +chr2 165057743 . T A 0 PASS DP=71;GPV=1;SPV=0.0015308;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:14,2:9,5 +chr2 166684335 . G C 0 PASS DP=43;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:7,1:9,3 +chr2 168788810 . A T 0 PASS DP=65;GPV=1;SPV=0.02438;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,3:13,2 +chr2 169522705 . ATTTTT A 0 PASS DP=24;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,3:4,1 +chr2 170794023 . C A 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,1:15,4 +chr2 171015415 . AACACAC A 0 PASS DP=48;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,10:4,4:3,6 +chr2 171194818 . GGGA G 0 PASS DP=32;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:6,8:3,1 +chr2 171234442 . T A 0 PASS DP=42;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,4:6,2:1,2 +chr2 171257157 . T A 0 PASS DP=35;GPV=1;SPV=0.2419;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,4:3,3:11,1 +chr2 171293140 . GA G 0 PASS DP=42;GPV=1;SPV=0.012052;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,2:6,9 +chr2 171902833 . A G 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3 +chr2 172190374 . A G 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4 +chr2 172441559 . T TA 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr2 172622551 . C CTCATATATT 0 PASS DP=72;GPV=1;SPV=0.072031;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:17,2:16,2 +chr2 172622558 . GAT G 0 PASS DP=74;GPV=1;SPV=0.021294;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:19,3:18,4 +chr2 173815234 . GA G 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:15,3:4,1 +chr2 174720839 . T TAAAAA 0 PASS DP=55;GPV=1;SPV=0.033516;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,8:9,1 +chr2 178032621 . G T 0 PASS DP=72;GPV=1;SPV=0.0037034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:26,7:10,6 +chr2 178127994 . C CT 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,2:7,3 +chr2 178157505 . G C 0 PASS DP=82;GPV=1;SPV=1.2492e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:15,5:15,13 +chr2 178432094 . G A 0 PASS DP=84;GPV=1;SPV=0.0075752;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:18,4:10,10 +chr2 178718105 . G T 0 PASS DP=67;GPV=1;SPV=1.012e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:10,9:9,12 +chr2 179015093 . T C 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr2 179040693 . G A 0 PASS DP=52;GPV=1;SPV=0.023047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:5,6:18,7 +chr2 183969689 . T C 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,3:6,7 +chr2 184213722 . A G 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,6:1,1 +chr2 184587718 . AAG A 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,6:6,1 +chr2 184912624 . TC T 0 PASS DP=75;GPV=1;SPV=0.0001497;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:19,5:8,7 +chr2 188066338 . C CAA 0 PASS DP=38;GPV=1;SPV=0.18281;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,6:9,5:9,1 +chr2 188368923 . G A 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr2 189059585 . GT G 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,1:3,3 +chr2 190314359 . GTA G 0 PASS DP=32;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,2:3,4 +chr2 190737761 . T C 0 PASS DP=28;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,3:6,2:0,1 +chr2 191120145 . T A 0 PASS DP=61;GPV=1;SPV=0.00030992;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:10,8:14,8 +chr2 191120753 . ACAC A 0 PASS DP=79;GPV=1;SPV=0.010002;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:21,4:17,4 +chr2 191120759 . TATATAAA T 0 PASS DP=76;GPV=1;SPV=0.0085279;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,3:15,4 +chr2 191383549 . T C 0 PASS DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,4:3,2 +chr2 192421667 . A T 0 PASS DP=66;GPV=1;SPV=0.0002648;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,5:15,8 +chr2 192981193 . A G 0 PASS DP=43;GPV=1;SPV=0.029349;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,8:2,6:10,2 +chr2 194048427 . G GCATGTATACACATATATGTATATA 0 PASS DP=30;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:5,3:10,1 +chr2 194916085 . G A 0 PASS DP=32;GPV=1;SPV=0.0088413;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,4:2,2 +chr2 196927409 . TA T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr2 197763472 . T C 0 PASS DP=43;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,3:7,2 +chr2 197864800 . T G 0 PASS DP=65;GPV=1;SPV=6.2242e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:8,7:14,7 +chr2 198954354 . G T 0 PASS DP=61;GPV=1;SPV=2.7571e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:10,10:4,9 +chr2 201917376 . GCA G 0 PASS DP=42;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,12:3,7:0,5 +chr2 202338609 . TC T 0 PASS DP=39;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:3,1:1,1 +chr2 202691649 . TTGTGTGTG T 0 PASS DP=42;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,11:5,9:3,2 +chr2 202766061 . AAC A 0 PASS DP=56;GPV=1;SPV=0.018293;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:12,6:5,2 +chr2 203209412 . G C 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1 +chr2 203354515 . C T 0 PASS DP=81;GPV=1;SPV=3.2001e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:19,7:13,12 +chr2 206163937 . T A 0 PASS DP=35;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:2,1:2,1 +chr2 206386681 . CA C 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:22,3:3,2 +chr2 206479508 . G C 0 PASS DP=69;GPV=1;SPV=0.00060836;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:12,9:18,6 +chr2 206596899 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:2,6:2,1 +chr2 206793248 . A C 0 PASS DP=36;GPV=1;SPV=0.091388;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,6:6,4:9,2 +chr2 207521122 . AT A 0 PASS DP=73;GPV=1;SPV=0.0018044;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,3:14,7 +chr2 207521134 . C A 0 PASS DP=65;GPV=1;SPV=0.0062626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,3:13,7 +chr2 207657123 . ACCTCGTGATTGAGGCCTCGGCCTC A 0 PASS DP=76;GPV=1;SPV=0.0020087;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:15,2:18,8 +chr2 207688933 . T A 0 PASS DP=61;GPV=1;SPV=0.0003086;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,4:12,7 +chr2 208559894 . TTTTTC T 0 PASS DP=65;GPV=1;SPV=0.0309;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:17,4:12,11 +chr2 208571470 . G A 0 PASS DP=66;GPV=1;SPV=0.00079602;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,8:14,3 +chr2 209247765 . G C 0 PASS DP=39;GPV=1;SPV=0.012812;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,6:7,5 +chr2 209312880 . CA C 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr2 209819145 . GCTAAC G 0 PASS DP=56;GPV=1;SPV=0.00023693;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,5:9,5 +chr2 211110158 . C CA 0 PASS DP=49;GPV=1;SPV=0.036268;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,11:14,8:6,3 +chr2 211165683 . CGTGTGTGTGT C 0 PASS DP=31;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:3,7:5,1 +chr2 211296874 . T TATAC 0 PASS DP=58;GPV=1;SPV=0.0027957;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,8:3,2:8,6 +chr2 211414506 . A T 0 PASS DP=36;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,3:0,2:1,1 +chr2 211944181 . A ATATAC 0 PASS DP=43;GPV=1;SPV=0.0013343;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,7:5,4 +chr2 212519717 . T C 0 PASS DP=73;GPV=1;SPV=7.9047e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:17,5:11,11 +chr2 212864431 . T A 0 PASS DP=52;GPV=1;SPV=0.10815;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,1:18,5 +chr2 212897252 . C T 0 PASS DP=60;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,3:18,2 +chr2 212964856 . A ATGTC 0 PASS DP=41;GPV=1;SPV=0.32176;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:9,2:16,2 +chr2 213648658 . T C 0 PASS DP=66;GPV=1;SPV=0.00017084;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:9,10:9,6 +chr2 215184107 . C T 0 PASS DP=71;GPV=1;SPV=1.6913e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:17,10:6,5 +chr2 215943838 . C CA 0 PASS DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:4,4:5,1 +chr2 216263435 . AAGAG A 0 PASS DP=48;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,6:4,5 +chr2 217198931 . A T 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,3:3,3 +chr2 217198932 . A C 0 PASS DP=23;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,8:0,3:1,5 +chr2 217198934 . C A 0 PASS DP=32;GPV=1;SPV=0.041026;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,3:4,1 +chr2 217410516 . G GTGTGTGTGTGTGTGTGTGTGTGTA 0 PASS DP=47;GPV=1;SPV=0.063158;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,12:3,4:3,8 +chr2 218359341 . CA C 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,7:5,1 +chr2 218433443 . GA G 0 PASS DP=52;GPV=1;SPV=0.0057036;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,4:6,4 +chr2 218434197 . C CA 0 PASS DP=58;GPV=1;SPV=0.0034107;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,17:9,13:9,4 +chr2 220867018 . A AAAG 0 PASS DP=48;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:13,6:7,4 +chr2 222116486 . G GA 0 PASS DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,5:5,1 +chr2 222116495 . GA G 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,5:4,1 +chr2 222571217 . A T 0 PASS DP=62;GPV=1;SPV=0.00011169;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,7:8,6 +chr2 224254054 . GAC G 0 PASS DP=46;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:10,2:9,3 +chr2 224695697 . A G 0 PASS DP=59;GPV=1;SPV=0.15766;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,3:10,2:8,1 +chr2 224820211 . C T 0 PASS DP=64;GPV=1;SPV=0.0034183;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,4:13,5 +chr2 226097503 . G A 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:16,2:9,5 +chr2 226566406 . C G 0 PASS DP=68;GPV=1;SPV=0.0050608;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,4:14,6 +chr2 227104638 . C CT 0 PASS DP=26;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,6:4,3 +chr2 227441286 . CA C 0 PASS DP=65;GPV=1;SPV=0.13148;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,2:19,3 +chr2 228425351 . C G 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,2:4,6 +chr2 228496261 . GAA G 0 PASS DP=28;GPV=1;SPV=0.057143;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:2,1:0,1 +chr2 229092038 . C A 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,4:10,1 +chr2 229512734 . T G 0 PASS DP=85;GPV=1;SPV=0.00030064;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:15,6:18,11 +chr2 230089325 . A AT 0 PASS DP=27;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,6:3,2:3,4 +chr2 231521977 . T C 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,1:8,3 +chr2 232763831 . C CA 0 PASS DP=61;GPV=1;SPV=0.0016269;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:10,6:10,11 +chr2 232847517 . A G 0 PASS DP=62;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,7:6,5:7,2 +chr2 233768582 . CT C 0 PASS DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,3:3,2 +chr2 234510916 . CT C 0 PASS DP=35;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:2,7:4,1 +chr2 236630911 . CTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.00022114;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:2,8:1,7:1,1 +chr2 236645120 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.067367;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:11,5:5,1 +chr2 237516830 . AGGAT A 0 PASS DP=42;GPV=1;SPV=0.02457;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,12:5,5:11,7 +chr2 237629467 . CT C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:3,7:4,2 +chr2 237974514 . TG T 0 PASS DP=33;GPV=1;SPV=0.0779;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,5:4,3 +chr2 238837721 . C CTT 0 PASS DP=31;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:5,6:1,4 +chr2 239008853 . G C 0 PASS DP=65;GPV=1;SPV=0.00067124;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,7:10,4 +chr2 239802883 . C CA 0 PASS DP=53;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:14,8:5,2 +chr2 240308864 . GTGTGTCTC G 0 PASS DP=62;GPV=1;SPV=0.031685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,3:18,3 +chr2 242043203 . T TA 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:14,1:21,3 +chr2 242183177 . G T 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,1:11,3 +chr20 161991 . G C 0 PASS DP=38;GPV=1;SPV=0.017846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,8:9,2 +chr20 743121 . GTC G 0 PASS DP=46;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,7:7,4:8,3 +chr20 1248045 . C CA 0 PASS DP=24;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:4,6:3,1 +chr20 1766142 . C T 0 PASS DP=33;GPV=1;SPV=0.24377;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:5,1:13,2 +chr20 1766165 . ATACATATATGTG A 0 PASS DP=32;GPV=1;SPV=0.29565;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,3:2,1:12,2 +chr20 1900328 . G A 0 PASS DP=76;GPV=1;SPV=2.9081e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:13,8:12,12 +chr20 2892289 . CA C 0 PASS DP=34;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2 +chr20 3062830 . C CAA 0 PASS DP=22;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1 +chr20 3090966 . A ATT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:3,2:1,3 +chr20 3829618 . ACATGACGTAGAGTATCTTTCCTATGCTTACTTGCC A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2 +chr20 3885499 . G A 0 PASS DP=72;GPV=1;SPV=5.4315e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,6:14,6 +chr20 4055295 . C T 0 PASS DP=25;GPV=1;SPV=0.0024499;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,6:3,4 +chr20 4085893 . C CT 0 PASS DP=46;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,13:6,10:13,3 +chr20 4231267 . G GTTATTATTATTATTA 0 PASS DP=39;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:4,3:3,3 +chr20 4550398 . CTCTT C 0 PASS DP=30;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,6:0,3:2,3 +chr20 5434642 . A T 0 PASS DP=75;GPV=1;SPV=0.00069104;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,15:13,9:21,6 +chr20 5501509 . T C 0 PASS DP=35;GPV=1;SPV=0.24868;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3 +chr20 5713917 . T C 0 PASS DP=22;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:1,1:0,1 +chr20 5985441 . CA C 0 PASS DP=27;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,5:5,2 +chr20 6240633 . C CTT 0 PASS DP=38;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,1:10,4 +chr20 7961816 . CT C 0 PASS DP=39;GPV=1;SPV=0.0096036;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:11,9:2,4 +chr20 8031836 . GT G 0 PASS DP=71;GPV=1;SPV=0.043742;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,2:18,5 +chr20 8114313 . T C 0 PASS DP=39;GPV=1;SPV=0.057736;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,3:16,4 +chr20 8229883 . TA T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,3:9,2 +chr20 8906183 . C G 0 PASS DP=87;GPV=1;SPV=0.00012114;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:20,6:16,9 +chr20 9799939 . C CA 0 PASS DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:11,3:3,1 +chr20 9991653 . G T 0 PASS DP=73;GPV=1;SPV=0.0026219;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:14,5:12,2 +chr20 10438472 . GT G 0 PASS DP=31;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1 +chr20 12322747 . C CT 0 PASS DP=36;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:9,9:4,2 +chr20 12757177 . A G 0 PASS DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:25,4:15,1 +chr20 13129774 . G C 0 PASS DP=74;GPV=1;SPV=5.4096e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:12,8:15,7 +chr20 13588250 . A G 0 PASS DP=36;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,8:3,7:0,1 +chr20 13592397 . C CAA 0 PASS DP=53;GPV=1;SPV=0.013406;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:9,7:7,2 +chr20 14119159 . A AT 0 PASS DP=29;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,2:2,3 +chr20 14215115 . C CAT 0 PASS DP=54;GPV=1;SPV=0.18206;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,1:18,4 +chr20 14857810 . G GTTTGTTTTGTTTTGT 0 PASS DP=60;GPV=1;SPV=0.031683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,10:10,7:13,3 +chr20 15378182 . C CATA 0 PASS DP=48;GPV=1;SPV=0.00076814;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:7,10:7,9 +chr20 17137901 . T C 0 PASS DP=58;GPV=1;SPV=2.6145e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,7:8,7 +chr20 17769643 . C A 0 PASS DP=69;GPV=1;SPV=0.00090273;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:18,4:13,11 +chr20 18486115 . A AAT 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2 +chr20 20175489 . TTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG T 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr20 20356494 . A C 0 PASS DP=60;GPV=1;SPV=0.032848;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr20 22083501 . GTATATTAATATAGACGTATATATAATATATACA G 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,2:10,3 +chr20 22958183 . T C 0 PASS DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,4:7,8 +chr20 24408123 . C T 0 PASS DP=32;GPV=1;SPV=2.7406e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:1,3:4,12 +chr20 26242394 . G C 0 PASS DP=73;GPV=1;SPV=6.4318e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:16,14:8,4 +chr20 26470782 . A C 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4 +chr20 26479354 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chr20 26489709 . A G 0 PASS DP=220;GPV=1;SPV=0.0021765;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,14:67,11:45,3 +chr20 26509415 . G T 0 PASS DP=142;GPV=1;SPV=0.048817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:71,10:35,1:36,9 +chr20 26579202 . G C 0 PASS DP=23;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:1,3:7,1 +chr20 26755353 . C G 0 PASS DP=43;GPV=1;SPV=0.29609;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:17,1:9,2 +chr20 28117242 . G C 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,3:10,1 +chr20 28513947 . A G 0 PASS DP=92;GPV=1;SPV=0.037241;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:8,1:40,9 +chr20 28514447 . A G 0 PASS DP=21;GPV=1;SPV=0.015905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,7:2,1 +chr20 28515137 . G C 0 PASS DP=96;GPV=1;SPV=0.017025;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:45,5:3,2 +chr20 28515216 . T A 0 PASS DP=71;GPV=1;SPV=0.022781;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:17,3:16,3 +chr20 28524338 . A C 0 PASS DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:11,2:24,3 +chr20 28531086 . T A 0 PASS DP=84;GPV=1;SPV=0.06863;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:19,4:26,1 +chr20 28547028 . A G 0 PASS DP=133;GPV=1;SPV=0.026138;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:64,18:57,17:7,1 +chr20 28557603 . T G 0 PASS DP=217;GPV=1;SPV=0.029213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:108,18:63,9:45,9 +chr20 28565778 . A G 0 PASS DP=369;GPV=1;SPV=0.0096569;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:177,20:40,6:137,14 +chr20 28616398 . A C 0 PASS DP=162;GPV=1;SPV=0.011508;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:74,24:25,13:49,11 +chr20 28645739 . A C 0 PASS DP=32;GPV=1;SPV=0.21107;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,1:5,4 +chr20 28811966 . G A 0 PASS DP=182;GPV=1;SPV=0.0016571;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:80,28:40,15:40,13 +chr20 28910155 . A G 0 PASS DP=252;GPV=1;SPV=0.044953;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:125,23:57,13:68,10 +chr20 28910215 . T G 0 PASS DP=279;GPV=1;SPV=0.0014333;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:131,33:57,20:74,13 +chr20 28948565 . G T 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2 +chr20 29061215 . T G 0 PASS DP=175;GPV=1;SPV=0.0019957;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:29,9:50,6 +chr20 29072865 . C G 0 PASS DP=343;GPV=1;SPV=0.0075268;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:155,27:96,14:59,13 +chr20 29073075 . TA T 0 PASS DP=282;GPV=1;SPV=0.0353;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:111,22:38,4:73,18 +chr20 29113396 . A T 0 PASS DP=205;GPV=1;SPV=0.038983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:89,13:47,10:42,3 +chr20 29295714 . T C 0 PASS DP=146;GPV=1;SPV=0.024476;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:57,15:29,9:28,6 +chr20 29295725 . T G 0 PASS DP=147;GPV=1;SPV=0.0027823;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,12:35,7:27,5 +chr20 29350739 . CT C 0 PASS DP=31;GPV=1;SPV=0.0056194;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr20 29449141 . CCTGGCTCGGCCAG C 0 PASS DP=148;GPV=1;SPV=0.02667;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:50,5:25,7 +chr20 29451370 . A C 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,0:24,4 +chr20 29484242 . A C 0 PASS DP=165;GPV=1;SPV=0.0086347;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,18:35,11:47,7 +chr20 29587475 . C CAAAAAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1 +chr20 29731270 . GA G 0 PASS DP=102;GPV=1;SPV=0.0036541;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:27,5:24,12 +chr20 29828270 . C T 0 PASS DP=182;GPV=1;SPV=0.0080158;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:45,9:42,7 +chr20 29882271 . C T 0 PASS DP=523;GPV=1;SPV=0.006049;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:283:238,45:94,14:144,31 +chr20 29923169 . A T 0 PASS DP=94;GPV=1;SPV=0.044127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:31,1:15,7 +chr20 29938133 . G C 0 PASS DP=111;GPV=1;SPV=0.011373;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:48,19:39,16:9,3 +chr20 29942344 . A G 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4 +chr20 29956057 . G T 0 PASS DP=125;GPV=1;SPV=0.018085;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:52,17:45,9:7,8 +chr20 29957830 . T G 0 PASS DP=42;GPV=1;SPV=0.043618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3 +chr20 29977144 . A T 0 PASS DP=36;GPV=1;SPV=0.29794;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:3,3:20,1 +chr20 29998621 . T A 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,1:11,5 +chr20 29999359 . C T 0 PASS DP=42;GPV=1;SPV=0.31829;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:2,2:24,1 +chr20 30010022 . G A 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:26,1:6,3 +chr20 30362776 . C T 0 PASS DP=232;GPV=1;SPV=0.045463;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:108,12:60,8:48,4 +chr20 30392740 . G A 0 PASS DP=124;GPV=1;SPV=0.014505;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:70,9:35,8:35,1 +chr20 30693968 . G A 0 PASS DP=200;GPV=1;SPV=0.048604;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:92,16:35,8:57,8 +chr20 30727081 . T C 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,3:17,1 +chr20 30730187 . CA C 0 PASS DP=24;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:4,3:1,2 +chr20 30907965 . ATTCT A 0 PASS DP=37;GPV=1;SPV=0.062154;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,8:3,6:12,2 +chr20 30986105 . T A 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3 +chr20 30986106 . T C 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chr20 31069965 . A C 0 PASS DP=147;GPV=1;SPV=0.049481;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:31,9:29,7 +chr20 31072670 . G A 0 PASS DP=256;GPV=1;SPV=0.015365;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:123,23:90,14:33,9 +chr20 31072734 . G T 0 PASS DP=411;GPV=1;SPV=0.0096234;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:211,25:155,13:56,12 +chr20 31106036 . T A 0 PASS DP=37;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,2:4,2 +chr20 31325557 . G GA 0 PASS DP=45;GPV=1;SPV=0.0053975;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,7:8,7 +chr20 31364188 . C CAA 0 PASS DP=41;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:6,5:5,2 +chr20 32176627 . T C 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2 +chr20 32470214 . A C 0 PASS DP=91;GPV=1;SPV=3.5095e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:38,19:26,11:12,8 +chr20 32835364 . G GTTTTT 0 PASS DP=29;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1 +chr20 33185671 . T G 0 PASS DP=77;GPV=1;SPV=6.5488e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,7:14,6 +chr20 34053383 . ATT A 0 PASS DP=22;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1 +chr20 36947405 . GGTGT G 0 PASS DP=22;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1 +chr20 36977673 . AGAGAGG A 0 PASS DP=24;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2 +chr20 36977713 . GA G 0 PASS DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,3:11,3 +chr20 37690460 . C CT 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr20 38123637 . CCT C 0 PASS DP=52;GPV=1;SPV=0.011666;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,3:13,4 +chr20 38653259 . G A 0 PASS DP=43;GPV=1;SPV=0.044156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,2:7,3 +chr20 38653297 . TG T 0 PASS DP=49;GPV=1;SPV=0.0044219;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,2:7,4 +chr20 39063527 . TTTTCTTTCTTTC T 0 PASS DP=53;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,9:5,6:11,3 +chr20 39347890 . A C 0 PASS DP=72;GPV=1;SPV=3.4813e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:16,4:9,11 +chr20 40461268 . T G 0 PASS DP=67;GPV=1;SPV=0.006186;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:21,3:6,4 +chr20 43727641 . A T 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,3:11,5 +chr20 44053540 . C CA 0 PASS DP=52;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,5:9,4:8,1 +chr20 44125113 . CA C 0 PASS DP=47;GPV=1;SPV=0.0038025;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,9:6,4 +chr20 44134112 . TA T 0 PASS DP=26;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,4:1,2:1,2 +chr20 44162813 . C CACACAT 0 PASS DP=26;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,5:0,2:0,3 +chr20 45425137 . CTTTCTCTTTCTT C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3 +chr20 45776658 . A G 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr20 45776660 . A G 0 PASS DP=29;GPV=1;SPV=0.43772;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:7,2:8,2 +chr20 46117352 . T A 0 PASS DP=67;GPV=1;SPV=0.025766;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:25,6:12,3 +chr20 47403265 . C CT 0 PASS DP=32;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:3,7:8,4 +chr20 47422211 . A G 0 PASS DP=60;GPV=1;SPV=0.009828;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,8:6,3:6,5 +chr20 48462068 . C CTTT 0 PASS DP=33;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,9:0,6:3,3 +chr20 48510399 . T G 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,3:15,1 +chr20 48514872 . C A 0 PASS DP=54;GPV=1;SPV=0.014151;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,6:6,4 +chr20 48867710 . A G 0 PASS DP=58;GPV=1;SPV=0.041361;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,11:8,7:13,4 +chr20 49873771 . CA C 0 PASS DP=28;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:6,6:2,1 +chr20 50026372 . A G 0 PASS DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,5:10,4 +chr20 51718814 . CAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:10,4:1,1 +chr20 51970612 . C CTT 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1 +chr20 52074568 . CT C 0 PASS DP=38;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,10:7,4 +chr20 52424157 . A G 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr20 53352777 . C CA 0 PASS DP=48;GPV=1;SPV=0.0010973;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,14:10,12:3,2 +chr20 53501711 . CTT C 0 PASS DP=28;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,6:2,2 +chr20 53885610 . C CTTTTTTTTTTT 0 PASS DP=45;GPV=1;SPV=0.13122;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,4:14,1 +chr20 54006822 . A C 0 PASS DP=58;GPV=1;SPV=0.032097;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:21,5:10,3 +chr20 54162530 . T G 0 PASS DP=52;GPV=1;SPV=0.025159;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:8,2:17,5 +chr20 54371623 . AAC A 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3 +chr20 55052284 . C A 0 PASS DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,2:9,7 +chr20 55734036 . G A 0 PASS DP=57;GPV=1;SPV=0.029574;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:17,9:6,3 +chr20 56349267 . TG T 0 PASS DP=35;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,5:9,1:6,4 +chr20 56993886 . G T 0 PASS DP=66;GPV=1;SPV=0.0052686;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:9,5:19,3 +chr20 57212079 . G A 0 PASS DP=66;GPV=1;SPV=0.006722;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:18,5:11,3 +chr20 58196827 . CAG C 0 PASS DP=50;GPV=1;SPV=0.19313;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1 +chr20 58668684 . C T 0 PASS DP=42;GPV=1;SPV=0.0017568;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:5,6:7,10 +chr20 58778312 . G A 0 PASS DP=60;GPV=1;SPV=0.022123;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:14,5:13,1 +chr20 59221253 . TAGGGATTCGGG T 0 PASS DP=59;GPV=1;SPV=0.00030254;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,4:10,7 +chr20 61390651 . T C 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,3:6,1 +chr20 61390665 . A G 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,6:3,2 +chr20 62594852 . G A 0 PASS DP=51;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,3:10,1:13,2 +chr20 63037881 . C G 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:5,3:8,5 +chr20 63765076 . C T 0 PASS DP=53;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,4:9,2:2,2 +chr20 63774676 . C CTG 0 PASS DP=52;GPV=1;SPV=0.031923;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,4:10,4 +chr21 5217576 . C A 0 PASS DP=326;GPV=1;SPV=0.026622;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:73,10:87,15 +chr21 5224758 . AG A 0 PASS DP=333;GPV=1;SPV=0.048801;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:181,26:89,13:92,13 +chr21 5229502 . C T 0 PASS DP=93;GPV=1;SPV=0.021774;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:51,8:30,4:21,4 +chr21 5246466 . G A 0 PASS DP=174;GPV=1;SPV=0.025054;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:79,19:42,9:37,10 +chr21 5344248 . C T 0 PASS DP=101;GPV=1;SPV=0.026837;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:23,7:25,5 +chr21 5378938 . G C 0 PASS DP=160;GPV=1;SPV=0.018278;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:64,14:31,10:33,4 +chr21 5383502 . G A 0 PASS DP=55;GPV=1;SPV=0.018636;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:7,3:16,7 +chr21 5388534 . A G 0 PASS DP=51;GPV=1;SPV=0.026376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:17,4:6,2 +chr21 6365393 . C T 0 PASS DP=337;GPV=1;SPV=0.026886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:162,26:84,17:78,9 +chr21 6367895 . G T 0 PASS DP=315;GPV=1;SPV=0.039173;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:161,21:74,12:87,9 +chr21 7225577 . A C 0 PASS DP=71;GPV=1;SPV=0.04501;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:12,4:24,6 +chr21 7240755 . A G 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1 +chr21 7277533 . G A 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:4,8:0,1 +chr21 7288695 . G A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,1:4,3 +chr21 7290397 . T C 0 PASS DP=446;GPV=1;SPV=0.014532;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:276:248,28:131,14:117,14 +chr21 7933408 . G A 0 PASS DP=234;GPV=1;SPV=0.039889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:67,12:48,9 +chr21 7942278 . T C 0 PASS DP=153;GPV=1;SPV=0.0096594;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:49,8:28,11 +chr21 7942322 . GTTCCATTCCGTTCCATTCCA G 0 PASS DP=188;GPV=1;SPV=0.036061;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:85,16:40,7:45,9 +chr21 7961874 . A G 0 PASS DP=225;GPV=1;SPV=0.029147;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:109,25:53,11:56,14 +chr21 7963862 . G C 0 PASS DP=417;GPV=1;SPV=0.020503;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:207,25:123,9:84,16 +chr21 8018801 . A T 0 PASS DP=64;GPV=1;SPV=0.14244;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:28,2:11,3 +chr21 8032190 . T G 0 PASS DP=301;GPV=1;SPV=0.020463;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:165,19:124,12:41,7 +chr21 8032601 . G T 0 PASS DP=132;GPV=1;SPV=0.0070468;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:50,19:13,3:37,16 +chr21 8043464 . G T 0 PASS DP=239;GPV=1;SPV=0.00019823;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:119,14:56,9:63,5 +chr21 8044801 . C T 0 PASS DP=165;GPV=1;SPV=0.046271;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:82,15:65,11:17,4 +chr21 8530938 . G T 0 PASS DP=259;GPV=1;SPV=0.044154;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:121,22:64,10:57,12 +chr21 8538822 . G A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0 +chr21 8577634 . A G 0 PASS DP=135;GPV=1;SPV=0.044794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:66,16:25,5:41,11 +chr21 8577643 . C A 0 PASS DP=149;GPV=1;SPV=0.045525;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:69,19:26,7:43,12 +chr21 8660444 . G A 0 PASS DP=118;GPV=1;SPV=0.033238;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:21,4:32,11 +chr21 8662131 . G A 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:15,1:18,4 +chr21 8693198 . T C 0 PASS DP=136;GPV=1;SPV=0.014501;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,16:28,3:37,13 +chr21 8771343 . C G 0 PASS DP=217;GPV=1;SPV=0.0081245;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:91,25:42,21:49,4 +chr21 8778910 . C A 0 PASS DP=170;GPV=1;SPV=0.014037;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:68,21:35,12:33,9 +chr21 8779026 . C A 0 PASS DP=208;GPV=1;SPV=0.021125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:95,21:47,11:48,10 +chr21 8781555 . C T 0 PASS DP=283;GPV=1;SPV=0.033579;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:150,28:87,14:63,14 +chr21 8798865 . G A 0 PASS DP=153;GPV=1;SPV=0.010757;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:67,19:24,8:43,11 +chr21 8807667 . T C 0 PASS DP=566;GPV=1;SPV=0.030587;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:336:301,35:113,14:188,21 +chr21 8810006 . A G 0 PASS DP=66;GPV=1;SPV=0.011245;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:18,8:8,1 +chr21 8811166 . T A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr21 8818458 . T C 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:4,3:23,1 +chr21 8823307 . T G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,6:0,1 +chr21 8836406 . C A 0 PASS DP=218;GPV=1;SPV=0.048287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:101,18:49,6:52,12 +chr21 8849019 . C T 0 PASS DP=199;GPV=1;SPV=0.0054687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:68,19:37,7:31,12 +chr21 8849824 . C T 0 PASS DP=253;GPV=1;SPV=0.049168;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:116,23:61,14:55,9 +chr21 8852441 . T A 0 PASS DP=311;GPV=1;SPV=0.043592;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:153,31:52,4:101,27 +chr21 8854470 . C A 0 PASS DP=237;GPV=1;SPV=0.048902;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:125,21:41,5:84,16 +chr21 8868313 . G A 0 PASS DP=505;GPV=1;SPV=0.037241;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:236,39:134,17:102,22 +chr21 8870443 . T A 0 PASS DP=292;GPV=1;SPV=0.044935;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:136,23:43,11:93,12 +chr21 9006811 . C G 0 PASS DP=347;GPV=1;SPV=0.016226;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:159,27:74,10:85,17 +chr21 9011354 . A G 0 PASS DP=377;GPV=1;SPV=0.024095;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:161,32:87,21:74,11 +chr21 9025010 . A G 0 PASS DP=275;GPV=1;SPV=0.019533;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:138,16:45,4:93,12 +chr21 9030942 . C G 0 PASS DP=376;GPV=1;SPV=0.039254;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:214:190,24:95,12:95,12 +chr21 9033936 . T A 0 PASS DP=320;GPV=1;SPV=0.047518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:128,22:68,14:60,8 +chr21 9044257 . C T 0 PASS DP=211;GPV=1;SPV=0.044244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:110,22:62,10:48,12 +chr21 9056375 . GGTAA G 0 PASS DP=306;GPV=1;SPV=0.012078;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:137,28:85,24:52,4 +chr21 9072877 . TGGA T 0 PASS DP=279;GPV=1;SPV=0.0061354;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:126,18:59,6:67,12 +chr21 9073118 . G A 0 PASS DP=244;GPV=1;SPV=0.036973;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:104,21:55,10:49,11 +chr21 9074353 . T C 0 PASS DP=431;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:203,23:90,9:113,14 +chr21 9075159 . C G 0 PASS DP=450;GPV=1;SPV=0.0088953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:195,28:100,16:95,12 +chr21 9075169 . C T 0 PASS DP=451;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:198,29:104,17:94,12 +chr21 9081112 . G A 0 PASS DP=338;GPV=1;SPV=0.046502;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:169,19:78,11:91,8 +chr21 9098683 . A G 0 PASS DP=379;GPV=1;SPV=0.028976;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:172,35:100,18:72,17 +chr21 9099661 . C G 0 PASS DP=323;GPV=1;SPV=0.00064544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:148,29:74,10:74,19 +chr21 9101268 . A G 0 PASS DP=426;GPV=1;SPV=0.042675;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:215,25:42,3:173,22 +chr21 9135070 . A G 0 PASS DP=482;GPV=1;SPV=0.016766;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:242,37:121,22:121,15 +chr21 9148053 . G A 0 PASS DP=478;GPV=1;SPV=0.015643;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:221,33:111,17:110,16 +chr21 9151666 . T G 0 PASS DP=264;GPV=1;SPV=0.0063978;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:131,22:57,13:74,9 +chr21 9153070 . C T 0 PASS DP=589;GPV=1;SPV=0.049622;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:321:266,46:133,24:133,22 +chr21 9156546 . G A 0 PASS DP=274;GPV=1;SPV=0.046721;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:143,17:79,9:64,8 +chr21 9165973 . T C 0 PASS DP=439;GPV=1;SPV=0.032983;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:214,26:104,15:110,11 +chr21 9185069 . G A 0 PASS DP=457;GPV=1;SPV=0.012961;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:259:228,31:132,14:96,17 +chr21 9186142 . T C 0 PASS DP=397;GPV=1;SPV=0.015658;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:202,23:112,13:90,10 +chr21 9186193 . C T 0 PASS DP=389;GPV=1;SPV=0.022827;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:189,26:91,11:98,15 +chr21 9190875 . G A 0 PASS DP=409;GPV=1;SPV=0.045307;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:224:199,25:96,11:103,14 +chr21 9260710 . G A 0 PASS DP=590;GPV=1;SPV=0.032029;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:325:292,33:125,10:167,23 +chr21 9268737 . A T 0 PASS DP=367;GPV=1;SPV=0.041187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:169,27:69,8:100,19 +chr21 9293655 . C T 0 PASS DP=348;GPV=1;SPV=0.023033;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:179,31:92,20:87,11 +chr21 9295067 . C G 0 PASS DP=254;GPV=1;SPV=0.041289;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:131,20:48,8:83,12 +chr21 9302711 . T C 0 PASS DP=467;GPV=1;SPV=0.015684;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:267:229,38:105,20:124,18 +chr21 9308811 . G A 0 PASS DP=300;GPV=1;SPV=0.035184;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:145,26:106,19:39,7 +chr21 9332356 . T G 0 PASS DP=478;GPV=1;SPV=0.043725;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:258:229,29:110,17:119,12 +chr21 9333921 . T A 0 PASS DP=240;GPV=1;SPV=0.026718;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:113,18:25,2:88,16 +chr21 9337912 . C T 0 PASS DP=461;GPV=1;SPV=0.029736;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:245:220,25:107,13:113,12 +chr21 9357361 . G C 0 PASS DP=412;GPV=1;SPV=0.037824;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:214:188,26:88,14:100,12 +chr21 9365733 . G A 0 PASS DP=642;GPV=1;SPV=0.010632;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:336:289,45:159,21:130,24 +chr21 9369383 . T A 0 PASS DP=463;GPV=1;SPV=0.013096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:246:211,35:82,7:129,28 +chr21 9370023 . C T 0 PASS DP=684;GPV=1;SPV=0.0077443;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:382:333,49:165,28:168,21 +chr21 9536188 . C CA 0 PASS DP=46;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,6:4,1 +chr21 9607113 . G GT 0 PASS DP=94;GPV=1;SPV=0.017175;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:19,3:24,3 +chr21 9612085 . A C 0 PASS DP=139;GPV=1;SPV=0.039782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:32,8:29,7 +chr21 9627948 . A G 0 PASS DP=122;GPV=1;SPV=0.0034366;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:33,9:28,6 +chr21 9655058 . G A 0 PASS DP=180;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:83,23:53,13:30,10 +chr21 9666461 . T C 0 PASS DP=172;GPV=1;SPV=0.02113;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:78,23:34,11:44,12 +chr21 9707048 . C T 0 PASS DP=175;GPV=1;SPV=0.034081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:80,18:40,9:40,9 +chr21 9792584 . C G 0 PASS DP=169;GPV=1;SPV=0.0063498;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:72,25:34,12:38,13 +chr21 9811163 . G A 0 PASS DP=228;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:109,25:67,14:42,11 +chr21 9816521 . C G 0 PASS DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:8,1:14,6 +chr21 9824548 . A C 0 PASS DP=509;GPV=1;SPV=0.021372;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:245,30:106,9:139,21 +chr21 9829679 . G C 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr21 9850534 . C A 0 PASS DP=157;GPV=1;SPV=0.012381;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,20:38,12:25,8 +chr21 9874503 . A T 0 PASS DP=115;GPV=1;SPV=0.0075878;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:23,5:28,12 +chr21 9881164 . C T 0 PASS DP=147;GPV=1;SPV=0.033327;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:71,16:28,6:43,10 +chr21 9883000 . C T 0 PASS DP=191;GPV=1;SPV=0.018617;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:88,20:42,7:46,13 +chr21 9887652 . A T 0 PASS DP=173;GPV=1;SPV=0.044135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:79,17:36,8:43,9 +chr21 9898097 . G T 0 PASS DP=169;GPV=1;SPV=0.02564;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:75,21:37,13:38,8 +chr21 9917343 . G A 0 PASS DP=160;GPV=1;SPV=0.0034987;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:69,26:36,11:33,15 +chr21 9986792 . C A 0 PASS DP=112;GPV=1;SPV=0.0057226;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:54,18:32,14:22,4 +chr21 10044542 . C T 0 PASS DP=170;GPV=1;SPV=0.046497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,18:34,9:41,9 +chr21 10105062 . G A 0 PASS DP=77;GPV=1;SPV=0.023995;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,8:8,3:21,5 +chr21 10153677 . G A 0 PASS DP=77;GPV=1;SPV=0.029773;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:25,4:13,2 +chr21 10153725 . T C 0 PASS DP=98;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,6:35,4:11,2 +chr21 10162749 . C T 0 PASS DP=147;GPV=1;SPV=0.0243;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:38,8:35,7 +chr21 10326762 . T C 0 PASS DP=324;GPV=1;SPV=0.047718;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:134,22:75,16:59,6 +chr21 10327082 . C T 0 PASS DP=275;GPV=1;SPV=0.034031;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:141,20:79,10:62,10 +chr21 10329305 . C T 0 PASS DP=299;GPV=1;SPV=0.039976;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:145,21:68,6:77,15 +chr21 10342457 . G C 0 PASS DP=333;GPV=1;SPV=0.010474;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:153,27:81,12:72,15 +chr21 10351577 . G A 0 PASS DP=263;GPV=1;SPV=0.017232;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:114,22:54,6:60,16 +chr21 10424416 . A C 0 PASS DP=569;GPV=1;SPV=0.045468;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:320:273,47:127,22:146,25 +chr21 10429776 . A G 0 PASS DP=549;GPV=1;SPV=0.026308;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:309:269,40:120,24:149,16 +chr21 10440190 . G C 0 PASS DP=328;GPV=1;SPV=0.0084739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:168,27:74,14:94,13 +chr21 10449909 . C A 0 PASS DP=272;GPV=1;SPV=0.034798;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:138,17:78,7:60,10 +chr21 10450507 . T C 0 PASS DP=446;GPV=1;SPV=0.010601;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:253:225,28:105,17:120,11 +chr21 10453619 . C T 0 PASS DP=197;GPV=1;SPV=0.043106;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:98,20:52,10:46,10 +chr21 10455786 . AAAT A 0 PASS DP=356;GPV=1;SPV=0.0052846;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:168,19:54,13:114,6 +chr21 10455856 . G A 0 PASS DP=331;GPV=1;SPV=0.01364;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:165,21:68,8:97,13 +chr21 10456762 . C A 0 PASS DP=286;GPV=1;SPV=0.049637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:149,19:68,4:81,15 +chr21 10474414 . C A 0 PASS DP=331;GPV=1;SPV=0.043199;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:156,19:91,11:65,8 +chr21 10487921 . GTATCT G 0 PASS DP=90;GPV=1;SPV=0.038944;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:27,6:13,1 +chr21 10556894 . A AT 0 PASS DP=123;GPV=1;SPV=0.0092117;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:51,20:28,11:23,9 +chr21 10607511 . G A 0 PASS DP=201;GPV=1;SPV=0.0043731;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:82,27:42,15:40,12 +chr21 10613891 . G C 0 PASS DP=154;GPV=1;SPV=0.0071254;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:65,22:43,10:22,12 +chr21 10633425 . C T 0 PASS DP=138;GPV=1;SPV=0.0024813;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:51,21:26,7:25,14 +chr21 10654765 . CATTCT C 0 PASS DP=110;GPV=1;SPV=0.005319;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:31,7:22,6 +chr21 10663000 . C G 0 PASS DP=112;GPV=1;SPV=0.024005;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:26,4:34,3 +chr21 10701889 . A T 0 PASS DP=164;GPV=1;SPV=0.04548;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:79,20:47,9:32,11 +chr21 10722821 . C T 0 PASS DP=180;GPV=1;SPV=0.016435;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:97,24:47,9:50,15 +chr21 10733602 . AT A 0 PASS DP=125;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:19,10:10,5:9,5 +chr21 10735336 . T C 0 PASS DP=203;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:92,23:39,10:53,13 +chr21 10804405 . T C 0 PASS DP=395;GPV=1;SPV=0.018756;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:195,30:101,17:94,13 +chr21 13016290 . AAAG A 0 PASS DP=112;GPV=1;SPV=0.043586;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:59,13:23,5:36,8 +chr21 13020336 . G A 0 PASS DP=89;GPV=1;SPV=0.048266;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,6:20,3 +chr21 13100149 . C T 0 PASS DP=75;GPV=1;SPV=0.053325;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:31,2:10,4 +chr21 13131259 . C T 0 PASS DP=47;GPV=1;SPV=0.019732;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,2:11,7 +chr21 13189369 . G A 0 PASS DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:24,1:20,4 +chr21 13434028 . T C 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:12,2:23,2 +chr21 13576092 . T A 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,2:6,7 +chr21 15120296 . C CT 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2 +chr21 18871297 . T C 0 PASS DP=42;GPV=1;SPV=0.0030458;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,4:9,7 +chr21 19345800 . CTA C 0 PASS DP=139;GPV=1;SPV=0.0094826;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:47,9:25,3:22,6 +chr21 19345830 . A ATGTC 0 PASS DP=160;GPV=1;SPV=0.0073403;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:47,6:28,2:19,4 +chr21 19457333 . T G 0 PASS DP=66;GPV=1;SPV=1.5052e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:10,8:11,8 +chr21 19468054 . G A 0 PASS DP=74;GPV=1;SPV=0.00085179;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,6:13,3 +chr21 20126646 . CA C 0 PASS DP=47;GPV=1;SPV=0.0053231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:3,6:13,5 +chr21 20126650 . A G 0 PASS DP=52;GPV=1;SPV=0.00041537;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:2,7:13,7 +chr21 20490603 . AT A 0 PASS DP=38;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:5,4:7,3 +chr21 21655214 . C A 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,4:13,6 +chr21 22113150 . CA C 0 PASS DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:12,6:6,8 +chr21 23404392 . A G 0 PASS DP=75;GPV=1;SPV=0.00057587;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:23,10:11,6 +chr21 23740006 . T G 0 PASS DP=66;GPV=1;SPV=0.01322;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:17,4:13,3 +chr21 24121385 . A AT 0 PASS DP=35;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:7,4:1,4 +chr21 25228144 . A AATAT 0 PASS DP=30;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:8,4:4,1 +chr21 27347940 . AAG A 0 PASS DP=35;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1 +chr21 27425073 . A ATTG 0 PASS DP=35;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,5:6,6 +chr21 27425120 . T C 0 PASS DP=32;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:4,2:6,3 +chr21 27656003 . GTATATATA G 0 PASS DP=28;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,6:3,2 +chr21 27687686 . T A 0 PASS DP=34;GPV=1;SPV=0.055718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,3:11,2 +chr21 28888397 . C A 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:13,9:5,3 +chr21 29054600 . ATTTTTT A 0 PASS DP=39;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,11:5,6:6,5 +chr21 29712085 . C T 0 PASS DP=65;GPV=1;SPV=0.026903;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,7:10,5:5,2 +chr21 31228221 . A T 0 PASS DP=18;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,3:1,1 +chr21 32144203 . AGAT A 0 PASS DP=70;GPV=1;SPV=0.089706;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1 +chr21 32147948 . C CAA 0 PASS DP=27;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:4,6:1,1 +chr21 32614249 . CT C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:6,11:0,1 +chr21 32672079 . AAAAAAG A 0 PASS DP=30;GPV=1;SPV=0.009553;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2 +chr21 32892711 . C T 0 PASS DP=39;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,4:2,2:11,2 +chr21 33124400 . G C 0 PASS DP=68;GPV=1;SPV=0.008323;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:14,4:17,4 +chr21 33129288 . T TTATTTTATTA 0 PASS DP=52;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,13:0,11:7,2 +chr21 33191488 . G T 0 PASS DP=56;GPV=1;SPV=0.084986;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,4:14,1 +chr21 33191496 . T C 0 PASS DP=45;GPV=1;SPV=0.004355;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,9:6,8:5,1 +chr21 33261035 . C CTTTTT 0 PASS DP=21;GPV=1;SPV=0.022136;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:5,4:1,3 +chr21 33890401 . C G 0 PASS DP=62;GPV=1;SPV=0.00099376;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,3:9,6 +chr21 34693975 . C CT 0 PASS DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4 +chr21 35429426 . TC T 0 PASS DP=47;GPV=1;SPV=0.24577;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,1:11,4 +chr21 36026545 . T C 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2 +chr21 37417537 . T C 0 PASS DP=33;GPV=1;SPV=0.0090729;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:0,6:12,2 +chr21 37515456 . G C 0 PASS DP=70;GPV=1;SPV=0.02764;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:16,3:22,5 +chr21 37557089 . CAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:7,7:5,1 +chr21 37828386 . G T 0 PASS DP=79;GPV=1;SPV=7.7207e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,7:12,9 +chr21 38808616 . GT G 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,2:21,2 +chr21 38808620 . G T 0 PASS DP=64;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,4:11,2:19,2 +chr21 39158395 . T TAA 0 PASS DP=42;GPV=1;SPV=0.0067968;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,11:7,9:10,2 +chr21 39249913 . G GGT 0 PASS DP=60;GPV=1;SPV=0.029893;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:9,8:17,1 +chr21 39639395 . T C 0 PASS DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,1:10,5 +chr21 39639399 . T C 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,1:14,3 +chr21 41112550 . G GA 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2 +chr21 41781019 . G A 0 PASS DP=27;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:5,2:0,0 +chr21 41781023 . G A 0 PASS DP=27;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:5,2:0,0 +chr21 41814053 . G A 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:3,4:7,5 +chr21 41874521 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:4,4:7,1 +chr21 42463781 . TAAA T 0 PASS DP=48;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,5:7,7 +chr21 42719645 . A T 0 PASS DP=62;GPV=1;SPV=0.027697;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,5:17,6 +chr21 43733251 . CCA C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,1:9,3 +chr21 43961524 . C T 0 PASS DP=27;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2 +chr21 44257699 . AATAAAT A 0 PASS DP=65;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,6:11,3:8,3 +chr21 44533241 . G A 0 PASS DP=81;GPV=1;SPV=4.9392e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:14,9:11,6 +chr21 44533242 . C T 0 PASS DP=80;GPV=1;SPV=5.5913e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,7:12,6 +chr21 44797741 . A AT 0 PASS DP=28;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:3,6:4,4 +chr21 44981815 . CG C 0 PASS DP=26;GPV=1;SPV=0.21538;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,1:6,2 +chr21 45134235 . G GGGTGTGTGCCCGACAGT 0 PASS DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,1:2,3 +chr21 45631776 . G T 0 PASS DP=82;GPV=1;SPV=4.0612e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,9:13,10 +chr21 45750398 . C T 0 PASS DP=50;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,5:12,3:7,2 +chr21 46041631 . C CA 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2 +chr21 46349569 . C T 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:20,5:10,5 +chr21 46696992 . A G 0 PASS DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,4:8,3 +chr22 10521617 . T C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr22 10534739 . T G 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chr22 10568215 . C A 0 PASS DP=45;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2 +chr22 10573921 . G C 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr22 10604932 . T A 0 PASS DP=136;GPV=1;SPV=0.022475;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,17:41,11:28,6 +chr22 10648827 . A C 0 PASS DP=63;GPV=1;SPV=0.021526;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:18,8:8,5 +chr22 10687050 . G A 0 PASS DP=289;GPV=1;SPV=0.020979;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:138,23:92,19:46,4 +chr22 10687167 . G T 0 PASS DP=246;GPV=1;SPV=0.018477;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:106,22:64,13:42,9 +chr22 10695790 . C G 0 PASS DP=260;GPV=1;SPV=0.035685;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:126,20:72,9:54,11 +chr22 10698578 . T C 0 PASS DP=106;GPV=1;SPV=0.0037333;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:25,8:24,5 +chr22 10699522 . CGCG C 0 PASS DP=85;GPV=1;SPV=0.029562;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,15:19,8:18,7 +chr22 10707152 . CTT C 0 PASS DP=398;GPV=1;SPV=0.031448;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:206,26:113,11:93,15 +chr22 10709799 . A T 0 PASS DP=397;GPV=1;SPV=0.033317;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:188,25:90,12:98,13 +chr22 10735435 . G A 0 PASS DP=528;GPV=1;SPV=0.0067305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:289:258,31:121,22:137,9 +chr22 10750506 . G T 0 PASS DP=189;GPV=1;SPV=0.017549;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:85,22:39,10:46,12 +chr22 10755128 . A G 0 PASS DP=414;GPV=1;SPV=0.022789;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:203,24:114,15:89,9 +chr22 10755218 . T G 0 PASS DP=327;GPV=1;SPV=0.044688;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:163,26:73,15:90,11 +chr22 10767552 . A G 0 PASS DP=320;GPV=1;SPV=0.023574;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:150,30:66,10:84,20 +chr22 10768772 . T A 0 PASS DP=373;GPV=1;SPV=0.00057237;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:173,40:76,13:97,27 +chr22 10773218 . A T 0 PASS DP=259;GPV=1;SPV=0.018599;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:111,14:64,9:47,5 +chr22 11025747 . CA C 0 PASS DP=101;GPV=1;SPV=0.010302;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,10:10,4:9,6 +chr22 11025749 . A C 0 PASS DP=121;GPV=1;SPV=0.018274;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:19,4:34,4 +chr22 11036708 . C T 0 PASS DP=339;GPV=1;SPV=0.035289;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:158,25:96,15:62,10 +chr22 11056722 . A G 0 PASS DP=317;GPV=1;SPV=0.041051;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:128,21:47,7:81,14 +chr22 11060602 . G A 0 PASS DP=298;GPV=1;SPV=0.0078577;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:148,18:83,12:65,6 +chr22 11066008 . A C 0 PASS DP=230;GPV=1;SPV=0.038415;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:109,15:61,10:48,5 +chr22 11284932 . C G 0 PASS DP=134;GPV=1;SPV=0.00061791;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:56,27:30,18:26,9 +chr22 11294641 . T TAAA 0 PASS DP=207;GPV=1;SPV=0.044607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:86,18:49,9:37,9 +chr22 11356705 . G T 0 PASS DP=124;GPV=1;SPV=0.039117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:33,8:21,5 +chr22 11456711 . C A 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3 +chr22 11461749 . T G 0 PASS DP=179;GPV=1;SPV=0.026656;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:36,8:39,12 +chr22 11786215 . G C 0 PASS DP=141;GPV=1;SPV=0.032597;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:23,3:40,6 +chr22 11811311 . T TA 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,4:9,4 +chr22 11829601 . G A 0 PASS DP=282;GPV=1;SPV=0.043352;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:148,20:90,10:58,10 +chr22 11852874 . A G 0 PASS DP=131;GPV=1;SPV=0.019055;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:8,2:45,11 +chr22 11876554 . G T 0 PASS DP=302;GPV=1;SPV=0.028743;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:154,28:55,10:99,18 +chr22 11878392 . A C 0 PASS DP=353;GPV=1;SPV=0.049172;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:155,24:75,9:80,15 +chr22 11902643 . A G 0 PASS DP=358;GPV=1;SPV=0.039593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:204:180,24:56,5:124,19 +chr22 11906467 . C A 0 PASS DP=142;GPV=1;SPV=0.040057;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:33,13:27,3 +chr22 11914787 . T C 0 PASS DP=472;GPV=1;SPV=0.030584;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:221,35:130,22:91,13 +chr22 11915942 . C A 0 PASS DP=480;GPV=1;SPV=0.045409;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:231,35:98,13:133,22 +chr22 11916460 . C A 0 PASS DP=550;GPV=1;SPV=0.020314;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:263,37:123,18:140,19 +chr22 11925198 . C T 0 PASS DP=213;GPV=1;SPV=0.023316;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:109,24:57,11:52,13 +chr22 11925199 . A G 0 PASS DP=213;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:104,28:52,13:52,15 +chr22 11951633 . G T 0 PASS DP=295;GPV=1;SPV=0.018415;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:134,19:79,13:55,6 +chr22 11972915 . A C 0 PASS DP=91;GPV=1;SPV=0.0019044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:18,7:20,6 +chr22 11973248 . CA C 0 PASS DP=244;GPV=1;SPV=0.013251;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:117,27:66,15:51,12 +chr22 12034084 . A T 0 PASS DP=275;GPV=1;SPV=0.0032644;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:134,23:47,9:87,14 +chr22 12038909 . A T 0 PASS DP=431;GPV=1;SPV=0.042967;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:216,31:99,6:117,25 +chr22 12051301 . G T 0 PASS DP=560;GPV=1;SPV=0.029679;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:307:271,36:151,19:120,17 +chr22 12051633 . A T 0 PASS DP=488;GPV=1;SPV=0.023375;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:235,28:68,18:167,10 +chr22 12078277 . T C 0 PASS DP=218;GPV=1;SPV=0.03677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:112,13:59,2:53,11 +chr22 12100010 . T A 0 PASS DP=342;GPV=1;SPV=0.0097233;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:158,23:106,13:52,10 +chr22 12118817 . CT C 0 PASS DP=346;GPV=1;SPV=0.01697;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:158,28:93,17:65,11 +chr22 12130240 . T C 0 PASS DP=143;GPV=1;SPV=0.048024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:27,4:42,14 +chr22 12199154 . C A 0 PASS DP=386;GPV=1;SPV=0.0045877;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:172,25:76,13:96,12 +chr22 12204165 . A T 0 PASS DP=395;GPV=1;SPV=0.00035321;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:175,25:97,11:78,14 +chr22 12204449 . G A 0 PASS DP=481;GPV=1;SPV=0.0026742;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:258:231,27:94,4:137,23 +chr22 12206096 . T G 0 PASS DP=150;GPV=1;SPV=0.031718;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:66,13:27,2:39,11 +chr22 12206854 . C T 0 PASS DP=209;GPV=1;SPV=0.028777;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:100,12:39,7:61,5 +chr22 12212222 . G GGT 0 PASS DP=99;GPV=1;SPV=0.024844;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,5:18,1:22,4 +chr22 12312303 . C A 0 PASS DP=65;GPV=1;SPV=0.031275;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,8:3,3:24,5 +chr22 12332156 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr22 12346787 . G C 0 PASS DP=83;GPV=1;SPV=0.015879;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,9:15,4 +chr22 12379848 . C T 0 PASS DP=192;GPV=1;SPV=0.035155;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:102,22:47,8:55,14 +chr22 12499442 . G A 0 PASS DP=191;GPV=1;SPV=0.024298;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:85,20:39,8:46,12 +chr22 12591569 . TAA T 0 PASS DP=185;GPV=1;SPV=0.021065;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:84,22:51,14:33,8 +chr22 12609888 . T C 0 PASS DP=209;GPV=1;SPV=0.001808;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:101,28:53,6:48,22 +chr22 12696321 . G C 0 PASS DP=226;GPV=1;SPV=0.041682;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:111,24:58,10:53,14 +chr22 12700781 . G A 0 PASS DP=171;GPV=1;SPV=0.043509;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:89,17:50,10:39,7 +chr22 12713363 . C A 0 PASS DP=103;GPV=1;SPV=0.019424;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:18,3:27,5 +chr22 12783137 . A G 0 PASS DP=214;GPV=1;SPV=0.016863;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:101,13:28,4:73,9 +chr22 12806249 . G A 0 PASS DP=111;GPV=1;SPV=0.044045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:25,8:26,4 +chr22 12814734 . G A 0 PASS DP=172;GPV=1;SPV=0.0016612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:38,11:38,7 +chr22 12814800 . T A 0 PASS DP=191;GPV=1;SPV=0.01657;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,18:44,13:36,5 +chr22 12869359 . G A 0 PASS DP=530;GPV=1;SPV=0.028473;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:281:250,31:98,21:152,10 +chr22 12874093 . C T 0 PASS DP=397;GPV=1;SPV=0.032139;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:214,26:100,8:114,18 +chr22 12877659 . G A 0 PASS DP=100;GPV=1;SPV=0.038808;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:45,4:12,3 +chr22 14956902 . G A 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,0:25,4 +chr22 15449266 . T C 0 PASS DP=59;GPV=1;SPV=0.017411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,5:15,3 +chr22 15470739 . G C 0 PASS DP=91;GPV=1;SPV=0.022125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:20,4:26,7 +chr22 15487624 . T G 0 PASS DP=71;GPV=1;SPV=0.0059872;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,2:17,7 +chr22 15546506 . A G 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2 +chr22 15579564 . G C 0 PASS DP=53;GPV=1;SPV=0.17881;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:31,4:0,0 +chr22 15631216 . G A 0 PASS DP=111;GPV=1;SPV=0.029441;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:25,8:28,7 +chr22 15706889 . CT C 0 PASS DP=107;GPV=1;SPV=0.00037632;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:34,22:9,8:25,14 +chr22 15732030 . G C 0 PASS DP=86;GPV=1;SPV=0.046808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:20,4:24,5 +chr22 15753796 . G T 0 PASS DP=45;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:24,4:0,0 +chr22 15769648 . G C 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4 +chr22 15910749 . C G 0 PASS DP=33;GPV=1;SPV=0.0045524;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr22 16433519 . G C 0 PASS DP=228;GPV=1;SPV=0.028339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:119,17:66,10:53,7 +chr22 16457892 . G A 0 PASS DP=80;GPV=1;SPV=0.043007;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:16,3:22,5 +chr22 16669926 . A G 0 PASS DP=83;GPV=1;SPV=8.0594e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:15,7:13,9 +chr22 16877536 . GAAGAA G 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,1:6,3 +chr22 17250563 . T TA 0 PASS DP=73;GPV=1;SPV=0.10954;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,5:18,2:15,3 +chr22 17875682 . T TAAA 0 PASS DP=57;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:10,13:6,9:4,4 +chr22 17959010 . G GTT 0 PASS DP=35;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,3:7,1 +chr22 18196944 . G C 0 PASS DP=104;GPV=1;SPV=0.015094;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:21,5:22,8 +chr22 18359171 . C T 0 PASS DP=106;GPV=1;SPV=0.041069;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:21,8:34,1 +chr22 18369572 . T C 0 PASS DP=30;GPV=1;SPV=0.054634;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,4:9,4 +chr22 18627931 . G A 0 PASS DP=51;GPV=1;SPV=0.03433;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:3,3:18,5 +chr22 18738690 . C G 0 PASS DP=150;GPV=1;SPV=0.023135;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:75,9:43,8:32,1 +chr22 18743457 . A G 0 PASS DP=157;GPV=1;SPV=0.007669;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:82,17:45,12:37,5 +chr22 18748805 . A T 0 PASS DP=87;GPV=1;SPV=0.037417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:23,3:18,5 +chr22 18750670 . G A 0 PASS DP=51;GPV=1;SPV=0.058083;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:23,6:5,1 +chr22 18755626 . G T 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:5,1:21,5 +chr22 18849248 . G A 0 PASS DP=135;GPV=1;SPV=0.0043627;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:56,18:19,10:37,8 +chr22 18852936 . C T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr22 18853870 . A G 0 PASS DP=38;GPV=1;SPV=0.024656;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1 +chr22 18940041 . C T 0 PASS DP=33;GPV=1;SPV=0.023692;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,6:3,4 +chr22 18953985 . C G 0 PASS DP=86;GPV=1;SPV=0.00018809;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,6:19,6 +chr22 19087971 . T G 0 PASS DP=59;GPV=1;SPV=4.9327e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:8,10:12,9 +chr22 20170031 . T G 0 PASS DP=72;GPV=1;SPV=0.00051413;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,3:12,9 +chr22 20342730 . A G 0 PASS DP=51;GPV=1;SPV=0.016864;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:6,8:15,3 +chr22 20592866 . G GAA 0 PASS DP=23;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr22 20655979 . G T 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:2,2:22,2 +chr22 21165958 . C T 0 PASS DP=59;GPV=1;SPV=0.0038961;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,3:9,9 +chr22 21175242 . A G 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4 +chr22 21225295 . G A 0 PASS DP=60;GPV=1;SPV=0.017354;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8 +chr22 21248916 . T C 0 PASS DP=198;GPV=1;SPV=0.0045935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:75,17:37,9:38,8 +chr22 21334672 . GTA G 0 PASS DP=56;GPV=1;SPV=0.012782;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:18,7:8,1 +chr22 21541225 . TACAC T 0 PASS DP=53;GPV=1;SPV=4.45e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:9,5:6,8 +chr22 21659370 . TAAA T 0 PASS DP=32;GPV=1;SPV=0.030702;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,13:1,8:3,5 +chr22 21659377 . A C 0 PASS DP=39;GPV=1;SPV=0.044451;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,8:7,3 +chr22 22267277 . T C 0 PASS DP=79;GPV=1;SPV=0.028065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:15,1:22,8 +chr22 22633065 . G A 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr22 24277946 . C T 0 PASS DP=78;GPV=1;SPV=0.047016;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:14,8:18,3 +chr22 24649431 . G T 0 PASS DP=93;GPV=1;SPV=0.010003;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,9:28,6:18,3 +chr22 24659588 . A G 0 PASS DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:14,2:20,3 +chr22 25910305 . C T 0 PASS DP=70;GPV=1;SPV=0.040009;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,2:17,4 +chr22 27114706 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,7:8,6:2,1 +chr22 29111617 . A C 0 PASS DP=48;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,2:4,1:3,1 +chr22 29906290 . A G 0 PASS DP=48;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,4:12,1:2,3 +chr22 30623903 . CAT C 0 PASS DP=80;GPV=1;SPV=0.031173;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:23,4:13,1 +chr22 32157497 . AT A 0 PASS DP=79;GPV=1;SPV=0.015097;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:20,8:13,4 +chr22 32483849 . G A 0 PASS DP=76;GPV=1;SPV=2.4486e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:16,9:11,7 +chr22 32640189 . C A 0 PASS DP=78;GPV=1;SPV=5.1989e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,2:8,10 +chr22 32988328 . T C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3 +chr22 32990403 . TCCAG T 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,3:9,2 +chr22 33411588 . C A 0 PASS DP=78;GPV=1;SPV=7.9911e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:9,8:19,5 +chr22 33450642 . G GAT 0 PASS DP=43;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,6:6,4:6,2 +chr22 35602210 . C T 0 PASS DP=71;GPV=1;SPV=0.036731;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,5:16,6 +chr22 36718271 . C CTT 0 PASS DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:5,5:2,1 +chr22 36738070 . C A 0 PASS DP=66;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,4:17,2:13,2 +chr22 36896650 . GAGGA G 0 PASS DP=35;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1 +chr22 37344235 . T C 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,4:4,4 +chr22 37511357 . CAA C 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr22 37661331 . A G 0 PASS DP=58;GPV=1;SPV=0.013888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,9:11,5:4,4 +chr22 37711615 . AAAACCC A 0 PASS DP=39;GPV=1;SPV=0.33771;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:11,3:9,1 +chr22 38937568 . TGC T 0 PASS DP=73;GPV=1;SPV=0.028808;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,9:13,4:15,5 +chr22 41212396 . CTT C 0 PASS DP=25;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:3,4:4,4 +chr22 42225000 . C CTT 0 PASS DP=30;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:6,2:7,3 +chr22 42445357 . C CT 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:6,10:3,3 +chr22 43587233 . G A 0 PASS DP=70;GPV=1;SPV=0.0053871;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,5:17,4 +chr22 43878682 . GCCAACTAT G 0 PASS DP=62;GPV=1;SPV=0.015188;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3 +chr22 43878694 . TCCCC T 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,1:12,3 +chr22 43878699 . G GT 0 PASS DP=62;GPV=1;SPV=0.019962;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:12,2:12,3 +chr22 44602533 . C G 0 PASS DP=36;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:0,0:1,2 +chr22 44779100 . T C 0 PASS DP=41;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:14,4:6,3 +chr22 44877039 . G C 0 PASS DP=49;GPV=1;SPV=0.0090442;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,10:9,4 +chr22 44935632 . A C 0 PASS DP=59;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:1,3:0,0:1,3 +chr22 46290547 . GGTGTTAGGAGGGTGGTGTGGCTGGAGGGTGA G 0 PASS DP=40;GPV=1;SPV=0.040021;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,4:10,1 +chr22 46617258 . C T 0 PASS DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,5:6,3 +chr22 46897640 . G T 0 PASS DP=29;GPV=1;SPV=0.0041229;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,2:4,5 +chr22 47076355 . G A 0 PASS DP=50;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,7:8,3:5,4 +chr22 48341751 . AGACAGAAGGAGCAGGATG A 0 PASS DP=46;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:10,2:12,2 +chr22 49186056 . C T 0 PASS DP=59;GPV=1;SPV=0.0099003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,2:15,7 +chr22 49484918 . C G 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr22 50002495 . C CT 0 PASS DP=40;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,7:4,1 +chr22 50363568 . T G 0 PASS DP=48;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4 +chr3 129852 . T C 0 PASS DP=68;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,6:9,5:7,1 +chr3 239595 . A ATAT 0 PASS DP=60;GPV=1;SPV=0.026;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,10:12,7:10,3 +chr3 432797 . G T 0 PASS DP=74;GPV=1;SPV=1.3783e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,6:14,9 +chr3 576388 . G A 0 PASS DP=90;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:23,4:23,2 +chr3 576475 . G A 0 PASS DP=66;GPV=1;SPV=0.04525;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,3:13,2 +chr3 576584 . G A 0 PASS DP=78;GPV=1;SPV=0.018117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:14,2:14,9 +chr3 597332 . T C 0 PASS DP=79;GPV=1;SPV=0.01228;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:11,8:16,3 +chr3 781920 . T TACACAC 0 PASS DP=22;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chr3 1071316 . CTTTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:2,4:6,4 +chr3 1880220 . C G 0 PASS DP=45;GPV=1;SPV=0.05832;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,2:9,4 +chr3 1894838 . C T 0 PASS DP=65;GPV=1;SPV=0.00011755;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,10:7,9 +chr3 2519469 . C A 0 PASS DP=83;GPV=1;SPV=4.361e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:17,6:15,10 +chr3 2632084 . A G 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr3 2876362 . T C 0 PASS DP=62;GPV=1;SPV=2.9233e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:12,11:9,9 +chr3 3356760 . T TAC 0 PASS DP=35;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:7,7:1,2 +chr3 5150463 . A AAAGTAAATAAAT 0 PASS DP=46;GPV=1;SPV=0.0044074;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:10,4:7,5 +chr3 6196996 . CA C 0 PASS DP=35;GPV=1;SPV=0.0072217;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2 +chr3 6443726 . A T 0 PASS DP=67;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,2:2,1:2,1 +chr3 6462261 . T C 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,3:15,1 +chr3 6935679 . T A 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,1:15,3 +chr3 7456450 . C CT 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,11:8,2 +chr3 8617526 . T TA 0 PASS DP=32;GPV=1;SPV=0.0016314;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,6:2,2 +chr3 9516781 . CTT C 0 PASS DP=38;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,10:3,7:3,3 +chr3 10128831 . C CT 0 PASS DP=30;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,7:1,1 +chr3 10169014 . A T 0 PASS DP=71;GPV=1;SPV=4.9258e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:13,12:9,5 +chr3 11564691 . T G 0 PASS DP=60;GPV=1;SPV=0.079729;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,6:24,2:5,4 +chr3 12044200 . C A 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:21,1:11,3 +chr3 12463229 . C CT 0 PASS DP=22;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,4:4,1 +chr3 12518321 . C G 0 PASS DP=56;GPV=1;SPV=0.002188;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,4:11,4 +chr3 12533659 . CA C 0 PASS DP=36;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,7:4,2 +chr3 12683372 . T TA 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr3 13191477 . ATTTT A 0 PASS DP=42;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,6:10,4:4,2 +chr3 13486288 . AAG A 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:4,2:13,2 +chr3 13587158 . A T 0 PASS DP=52;GPV=1;SPV=0.00086916;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,2:7,5 +chr3 13992133 . G A 0 PASS DP=74;GPV=1;SPV=0.034948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:21,3:19,4 +chr3 14893752 . C CT 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,5:4,2 +chr3 15361155 . T A 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,10:8,3 +chr3 15777849 . T TACACAC 0 PASS DP=49;GPV=1;SPV=0.086046;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,8:16,4:2,4 +chr3 17003734 . C A 0 PASS DP=72;GPV=1;SPV=0.01488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,4:23,2 +chr3 17082139 . G GTTT 0 PASS DP=26;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,3:3,1 +chr3 18596694 . TA T 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr3 18994437 . G A 0 PASS DP=43;GPV=1;SPV=0.049965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,4:7,1 +chr3 19094960 . C G 0 PASS DP=63;GPV=1;SPV=0.00020585;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,5:14,10 +chr3 21552466 . T C 0 PASS DP=63;GPV=1;SPV=0.0060771;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:14,2:13,6 +chr3 21699535 . G A 0 PASS DP=70;GPV=1;SPV=0.0010937;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:18,9:13,4 +chr3 22905849 . GTATATATA G 0 PASS DP=27;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1 +chr3 23614802 . ATT A 0 PASS DP=39;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,9:5,3:4,6 +chr3 26948136 . A G 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,9:10,4 +chr3 27803357 . A AATTTATTTATTT 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr3 27823721 . C CTTTTTTTTT 0 PASS DP=52;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:8,7:10,2 +chr3 28489982 . A G 0 PASS DP=71;GPV=1;SPV=6.5178e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,9:10,3 +chr3 28990677 . C CT 0 PASS DP=25;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,6:4,1 +chr3 29763609 . A C 0 PASS DP=61;GPV=1;SPV=3.4451e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,4:6,10 +chr3 30032018 . G A 0 PASS DP=72;GPV=1;SPV=0.0015169;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,5:12,3 +chr3 30255749 . G A 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,3:11,5 +chr3 30950443 . TA T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1 +chr3 31663450 . A T 0 PASS DP=85;GPV=1;SPV=4.2446e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:16,10:13,8 +chr3 32538625 . T A 0 PASS DP=55;GPV=1;SPV=0.00045655;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,6:8,5 +chr3 32806445 . AT A 0 PASS DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,3:5,9 +chr3 33740789 . C CT 0 PASS DP=33;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:4,6:7,1 +chr3 33852925 . C T 0 PASS DP=50;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,4:9,3:4,1 +chr3 34704588 . G GAT 0 PASS DP=21;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:0,2:6,4 +chr3 35417627 . G A 0 PASS DP=64;GPV=1;SPV=7.0259e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:8,9:12,11 +chr3 35554528 . C CTT 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chr3 36780910 . G GGATAGATAGATA 0 PASS DP=52;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,9:4,6:5,3 +chr3 37101683 . AAG A 0 PASS DP=63;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,4:14,2 +chr3 39585526 . C T 0 PASS DP=47;GPV=1;SPV=0.028303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,4:15,5 +chr3 39678572 . C T 0 PASS DP=46;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:9,4:4,1:5,3 +chr3 40281294 . A T 0 PASS DP=39;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:0,1:1,1 +chr3 40787632 . A G 0 PASS DP=73;GPV=1;SPV=4.3618e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,9:13,6 +chr3 45247058 . A AATTTTATTTTATTTTATTTTATTTT 0 PASS DP=34;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:4,3:8,1 +chr3 50008546 . CT C 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2 +chr3 51402566 . A ATTTT 0 PASS DP=31;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:8,2:5,3 +chr3 51543608 . CA C 0 PASS DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:10,3:1,2 +chr3 51793343 . CT C 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1 +chr3 52577430 . CAAAA C 0 PASS DP=34;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:15,2:2,2 +chr3 52945162 . A G 0 PASS DP=32;GPV=1;SPV=0.034547;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,4:9,3 +chr3 52994688 . T A 0 PASS DP=62;GPV=1;SPV=6.8987e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:10,9:10,4 +chr3 54500519 . T A 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,1:15,4 +chr3 54793094 . T G 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,4:16,5 +chr3 57037876 . A AAAAAC 0 PASS DP=52;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,13:2,7:8,6 +chr3 57531767 . CA C 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1 +chr3 60173917 . GT G 0 PASS DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:3,2:6,3 +chr3 60206148 . T A 0 PASS DP=46;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,4:9,3:8,1 +chr3 60710074 . T TA 0 PASS DP=33;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:2,7:7,2 +chr3 62418487 . A AT 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,4:6,2 +chr3 62525679 . A ATGTGTGTGTGTGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.20188;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,2:12,2 +chr3 62701621 . AAG A 0 PASS DP=55;GPV=1;SPV=0.020482;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:18,1:6,5 +chr3 64600051 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:4,5:1,3 +chr3 65044104 . C T 0 PASS DP=34;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,6:1,1:2,5 +chr3 65364165 . T TA 0 PASS DP=21;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:0,4:4,3 +chr3 65514429 . C G 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3 +chr3 66032377 . A ATT 0 PASS DP=50;GPV=1;SPV=0.045714;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,7:16,2:9,5 +chr3 66144373 . C T 0 PASS DP=63;GPV=1;SPV=2.7598e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,5:8,5 +chr3 66613115 . C CTTTCTTTCTTTCTTT 0 PASS DP=34;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,4:1,1:5,3 +chr3 66874098 . T C 0 PASS DP=36;GPV=1;SPV=0.21475;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,2:7,2 +chr3 67792404 . C CAGAG 0 PASS DP=37;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:12,4:3,2 +chr3 68231344 . A ATTT 0 PASS DP=28;GPV=1;SPV=0.01971;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,7:4,1 +chr3 69018362 . AC A 0 PASS DP=25;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,10:0,1:1,9 +chr3 69163847 . C G 0 PASS DP=64;GPV=1;SPV=4.8478e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:10,6:11,8 +chr3 70882485 . G T 0 PASS DP=87;GPV=1;SPV=0.00023389;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:40,18:16,11:24,7 +chr3 71503601 . G GAA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:10,3:0,1 +chr3 72339949 . T G 0 PASS DP=31;GPV=1;SPV=0.009581;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,9:4,3 +chr3 73139131 . G GT 0 PASS DP=38;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,6:6,5:5,1 +chr3 73350465 . T TGTGC 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2 +chr3 73439820 . C A 0 PASS DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:15,8:3,3 +chr3 74949227 . G T 0 PASS DP=63;GPV=1;SPV=3.8091e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:12,13:10,7 +chr3 75288669 . GCTCCCT G 0 PASS DP=66;GPV=1;SPV=0.002963;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:17,11:10,4 +chr3 75927976 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.010143;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,6:4,2 +chr3 76065829 . T C 0 PASS DP=57;GPV=1;SPV=0.020961;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,8:12,5 +chr3 76555417 . GA G 0 PASS DP=27;GPV=1;SPV=0.011966;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1 +chr3 76667693 . GCAGTGATCAGACTTTTT G 0 PASS DP=46;GPV=1;SPV=0.049216;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:5,4:11,4 +chr3 78238121 . G C 0 PASS DP=43;GPV=1;SPV=0.37283;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,4:16,3:3,1 +chr3 78238133 . A AGAAAG 0 PASS DP=43;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,5:18,4:3,1 +chr3 78718782 . AGAAG A 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,5:3,1 +chr3 79534148 . CA C 0 PASS DP=28;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr3 81199034 . G A 0 PASS DP=65;GPV=1;SPV=1.3425e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,10:11,4 +chr3 81230327 . G A 0 PASS DP=80;GPV=1;SPV=9.7028e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:12,7:21,10 +chr3 82916427 . C A 0 PASS DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,1:10,4 +chr3 82916515 . ATG A 0 PASS DP=47;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,2:11,4 +chr3 83264013 . A C 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4 +chr3 83343566 . A AAAAT 0 PASS DP=74;GPV=1;SPV=0.0015778;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:11,12:17,9 +chr3 83802912 . C G 0 PASS DP=57;GPV=1;SPV=0.0026191;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:13,8:12,4 +chr3 84459753 . A ATATAATATACTAATT 0 PASS DP=40;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,2:8,6 +chr3 84498434 . AT A 0 PASS DP=51;GPV=1;SPV=0.0026945;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:11,9:7,7 +chr3 84907634 . C T 0 PASS DP=40;GPV=1;SPV=0.10784;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,4:6,2:1,2 +chr3 85134029 . T A 0 PASS DP=94;GPV=1;SPV=3.774e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:32,23:13,14:19,9 +chr3 85269762 . G C 0 PASS DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:8,6:14,8 +chr3 86385093 . A T 0 PASS DP=65;GPV=1;SPV=0.010747;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,4:9,5 +chr3 87653922 . A G 0 PASS DP=42;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,7:6,4:4,3 +chr3 87905735 . C CA 0 PASS DP=60;GPV=1;SPV=0.038531;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:15,9:10,3 +chr3 88457695 . C CAAAAT 0 PASS DP=41;GPV=1;SPV=0.01558;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,11:7,5:7,6 +chr3 88494803 . G T 0 PASS DP=72;GPV=1;SPV=0.024567;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:18,5:16,1 +chr3 89001840 . T A 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,4:16,4 +chr3 90720510 . A C 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr3 90849704 . T C 0 PASS DP=174;GPV=1;SPV=0.00096455;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,14:32,2:48,12 +chr3 90885770 . G A 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3 +chr3 90889498 . A T 0 PASS DP=199;GPV=1;SPV=0.017728;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:87,18:24,6:63,12 +chr3 90921450 . C A 0 PASS DP=395;GPV=1;SPV=0.010297;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:204,28:109,17:95,11 +chr3 90934900 . C G 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4 +chr3 90939815 . C G 0 PASS DP=70;GPV=1;SPV=0.047994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:20,6:13,2 +chr3 90952757 . C T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,1:1,3 +chr3 90956374 . G C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr3 90997507 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1 +chr3 91022377 . C G 0 PASS DP=276;GPV=1;SPV=0.013225;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:145,19:41,12:104,7 +chr3 91031691 . T C 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:19,4:23,2 +chr3 91032152 . T G 0 PASS DP=49;GPV=1;SPV=0.10034;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:0,0:22,4 +chr3 91092531 . G T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,1:2,3 +chr3 91141801 . G A 0 PASS DP=104;GPV=1;SPV=0.023151;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:0,1:55,6 +chr3 91192149 . A C 0 PASS DP=427;GPV=1;SPV=0.014922;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:210,30:162,19:48,11 +chr3 91206664 . G C 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0 +chr3 91278261 . G T 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,3:16,1 +chr3 91278660 . T A 0 PASS DP=78;GPV=1;SPV=0.090326;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:25,3:19,2 +chr3 91676678 . T G 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr3 91988313 . C T 0 PASS DP=140;GPV=1;SPV=0.028456;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:28,6:34,1 +chr3 92379478 . C G 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr3 93463936 . A G 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,1:6,3 +chr3 93559616 . T G 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4 +chr3 93706202 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr3 94379241 . C CTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.018593;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:3,3:5,4 +chr3 96311792 . A AGTGTGTGTGTGTGTGTGT 0 PASS DP=45;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:5,6:11,1 +chr3 97483214 . C T 0 PASS DP=70;GPV=1;SPV=0.00033054;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,3:10,7 +chr3 97539042 . T G 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,2:15,3 +chr3 97674296 . T A 0 PASS DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7 +chr3 97815678 . CTT C 0 PASS DP=27;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,3:3,6 +chr3 98839159 . CTT C 0 PASS DP=41;GPV=1;SPV=0.039387;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:5,1:14,5 +chr3 99509106 . A T 0 PASS DP=67;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,5:7,3:14,2 +chr3 99626435 . C CTT 0 PASS DP=33;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:4,8:0,1 +chr3 101133802 . T A 0 PASS DP=59;GPV=1;SPV=4.6357e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:5,6:12,6 +chr3 101136760 . G A 0 PASS DP=64;GPV=1;SPV=0.0016781;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:14,4:12,6 +chr3 101160399 . C CGTGT 0 PASS DP=50;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,9:9,8:6,1 +chr3 101596725 . TA T 0 PASS DP=40;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,1:12,3 +chr3 102382738 . A C 0 PASS DP=65;GPV=1;SPV=0.046286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:20,4:16,3 +chr3 104602297 . T G 0 PASS DP=79;GPV=1;SPV=0.0023706;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:19,4:19,8 +chr3 104938687 . A G 0 PASS DP=45;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,4:3,3:3,1 +chr3 105370946 . C T 0 PASS DP=74;GPV=1;SPV=4.5693e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:8,9:13,11 +chr3 105404675 . G GA 0 PASS DP=50;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:12,8:2,6 +chr3 106109796 . CTT C 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:1,2:13,3 +chr3 106512578 . C T 0 PASS DP=39;GPV=1;SPV=0.10008;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,6:8,5:10,1 +chr3 109286729 . A T 0 PASS DP=70;GPV=1;SPV=3.4643e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:14,9:12,11 +chr3 109575163 . T TATA 0 PASS DP=43;GPV=1;SPV=0.071818;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:9,2:13,4 +chr3 109730340 . C CAGAGAGAGAGAGAG 0 PASS DP=44;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,10:5,6:4,4 +chr3 109789964 . C A 0 PASS DP=21;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,2:3,1:3,1 +chr3 110068619 . G C 0 PASS DP=72;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:22,4:13,1 +chr3 110505831 . C T 0 PASS DP=25;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,1:4,3 +chr3 110884738 . G C 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,2:15,2 +chr3 111007974 . T TATGTATATATAC 0 PASS DP=53;GPV=1;SPV=0.048554;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,6:12,4:9,2 +chr3 112051652 . CT C 0 PASS DP=56;GPV=1;SPV=0.021517;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,3:13,6 +chr3 112199388 . G A 0 PASS DP=72;GPV=1;SPV=5.4898e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:15,8:11,7 +chr3 113119174 . CTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,7:3,4 +chr3 113156313 . G C 0 PASS DP=63;GPV=1;SPV=0.0052563;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,3:15,6 +chr3 113172202 . T G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,2:20,2 +chr3 113191188 . G A 0 PASS DP=66;GPV=1;SPV=1.144e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:8,7:13,10 +chr3 113856547 . T G 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1 +chr3 114362265 . C T 0 PASS DP=58;GPV=1;SPV=0.00067377;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:17,21:6,14:11,7 +chr3 115169556 . G T 0 PASS DP=77;GPV=1;SPV=3.0482e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:11,12:17,4 +chr3 115325729 . A T 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:16,5:8,4 +chr3 115325730 . G A 0 PASS DP=73;GPV=1;SPV=0.00056062;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:18,6:9,4 +chr3 116100206 . T C 0 PASS DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:12,10:3,4 +chr3 116160415 . A G 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,3:0,1 +chr3 116701070 . A C 0 PASS DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,8:10,4 +chr3 118512217 . A C 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3 +chr3 118601804 . A T 0 PASS DP=29;GPV=1;SPV=0.002981;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:4,8:2,3 +chr3 118633883 . T A 0 PASS DP=40;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,4:3,3:1,1 +chr3 121228569 . T G 0 PASS DP=86;GPV=1;SPV=0.011158;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:23,5:13,1 +chr3 121764195 . A AACACACACAC 0 PASS DP=53;GPV=1;SPV=0.022955;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,7:9,5 +chr3 123427220 . C T 0 PASS DP=78;GPV=1;SPV=4.2086e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,5:11,8 +chr3 125256967 . GTTT G 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:7,9:2,3 +chr3 126059282 . G GA 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,3:8,3 +chr3 129709499 . G A 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2 +chr3 130095408 . G T 0 PASS DP=52;GPV=1;SPV=0.10147;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,7:14,2:8,5 +chr3 130125033 . TG T 0 PASS DP=26;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,1:5,5 +chr3 130302003 . C G 0 PASS DP=66;GPV=1;SPV=3.2211e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:8,5:10,6 +chr3 132763487 . T C 0 PASS DP=75;GPV=1;SPV=0.069447;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:13,5:30,1 +chr3 132798951 . A G 0 PASS DP=61;GPV=1;SPV=0.023599;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:13,3:17,4 +chr3 134051500 . TTTCTTTCTTTCTTTC T 0 PASS DP=25;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,5:7,2 +chr3 135026064 . G A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,3:9,1 +chr3 135640369 . T TGATA 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,4:7,6 +chr3 136498284 . T C 0 PASS DP=27;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:3,2:8,2 +chr3 136867108 . CTTTCTTTCTTTG C 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:0,0:5,2 +chr3 138339643 . G C 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,8:6,4 +chr3 139047330 . C A 0 PASS DP=59;GPV=1;SPV=1.0935e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:4,7:12,7 +chr3 141004091 . CTG C 0 PASS DP=38;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:7,2:7,6 +chr3 141644602 . C A 0 PASS DP=69;GPV=1;SPV=0.0013259;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:17,8:15,7 +chr3 141902597 . A C 0 PASS DP=77;GPV=1;SPV=0.00010642;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:20,6:7,6 +chr3 141932460 . AT A 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,5:6,3 +chr3 142805133 . C T 0 PASS DP=50;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,2:4,1:2,1 +chr3 144563278 . T TTA 0 PASS DP=33;GPV=1;SPV=0.039921;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4 +chr3 145215163 . TC T 0 PASS DP=59;GPV=1;SPV=1.5528e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,4:10,8 +chr3 145665509 . T A 0 PASS DP=68;GPV=1;SPV=0.0086108;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,3:11,4 +chr3 145898362 . C CT 0 PASS DP=42;GPV=1;SPV=0.0096876;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:8,8:6,3 +chr3 145930969 . A C 0 PASS DP=35;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,5:8,4 +chr3 146212460 . T C 0 PASS DP=65;GPV=1;SPV=0.040478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr3 147546917 . A AAAATAAAT 0 PASS DP=49;GPV=1;SPV=0.022996;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:14,4:10,5 +chr3 148857063 . T TTTTTTTG 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,1:5,4 +chr3 149440328 . CTATA C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,2:0,0:0,2 +chr3 150193142 . GTT G 0 PASS DP=25;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,2:3,3 +chr3 150560608 . G A 0 PASS DP=73;GPV=1;SPV=6.785e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:13,7:14,8 +chr3 151746365 . G GT 0 PASS DP=37;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:8,6:5,1 +chr3 152770926 . A ATGTGTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr3 153128424 . C G 0 PASS DP=69;GPV=1;SPV=0.0001119;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,9:13,6 +chr3 153999306 . A G 0 PASS DP=67;GPV=1;SPV=0.060505;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,1:13,3 +chr3 160036090 . G A 0 PASS DP=70;GPV=1;SPV=0.00026073;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:19,5:10,11 +chr3 160970447 . A T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1 +chr3 161908409 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:2,5:3,3 +chr3 163459100 . C CT 0 PASS DP=43;GPV=1;SPV=0.0033421;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,11:5,5:10,6 +chr3 163494555 . C CCACTT 0 PASS DP=63;GPV=1;SPV=0.00034031;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:16,7:8,6 +chr3 163494556 . T A 0 PASS DP=68;GPV=1;SPV=1.5869e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:16,8:7,10 +chr3 163635704 . T C 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,1:15,4 +chr3 164537161 . T TATATAC 0 PASS DP=38;GPV=1;SPV=0.0030303;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:0,7:0,3:0,4 +chr3 165048586 . G T 0 PASS DP=45;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:7,4:2,4 +chr3 165585878 . T C 0 PASS DP=43;GPV=1;SPV=0.022983;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:12,2:5,9 +chr3 165585879 . T C 0 PASS DP=42;GPV=1;SPV=0.0027511;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,3:5,9 +chr3 166285691 . C CAT 0 PASS DP=36;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr3 167575608 . C A 0 PASS DP=61;GPV=1;SPV=0.00082104;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:9,13:17,3 +chr3 170404145 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,1:3,5 +chr3 171971062 . C T 0 PASS DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:1,2:2,1 +chr3 172737350 . A ATTTT 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr3 172778588 . CT C 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr3 173830245 . A T 0 PASS DP=53;GPV=1;SPV=0.00016645;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,24:6,9:8,15 +chr3 174107017 . C G 0 PASS DP=42;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,5:8,1:6,4 +chr3 176384810 . A T 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2 +chr3 177263053 . CTT C 0 PASS DP=44;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,7:3,3 +chr3 179743926 . G GT 0 PASS DP=46;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:8,9:4,8:4,1 +chr3 179797605 . A T 0 PASS DP=44;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:5,1:14,3 +chr3 181751957 . G A 0 PASS DP=31;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,3:0,1:4,2 +chr3 182645608 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,8:5,3:1,5 +chr3 183531448 . T TTTTTG 0 PASS DP=29;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,2:5,4 +chr3 183778111 . C CA 0 PASS DP=33;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:5,2:8,3 +chr3 185077789 . T TG 0 PASS DP=25;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,9:1,7:1,2 +chr3 185567814 . A C 0 PASS DP=140;GPV=1;SPV=0.039734;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:52,11:28,5:24,6 +chr3 185588050 . A ATTT 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3 +chr3 186776847 . G GT 0 PASS DP=44;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:13,9:4,2 +chr3 186864128 . G C 0 PASS DP=35;GPV=1;SPV=0.044511;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:2,2:11,6 +chr3 187892231 . T A 0 PASS DP=56;GPV=1;SPV=0.010015;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6 +chr3 187892273 . TTGGATA T 0 PASS DP=49;GPV=1;SPV=0.002317;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,4:9,8 +chr3 188142604 . G A 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,3:3,1 +chr3 188936019 . C CTT 0 PASS DP=35;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:9,4:7,1 +chr3 189742243 . CAAAAA C 0 PASS DP=42;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:5,7:5,4 +chr3 190748294 . T C 0 PASS DP=66;GPV=1;SPV=0.049488;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:14,4:21,2 +chr3 191259852 . C CT 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:10,2:8,2 +chr3 192086733 . T G 0 PASS DP=77;GPV=1;SPV=0.00030989;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:16,7:17,8 +chr3 192818078 . C G 0 PASS DP=68;GPV=1;SPV=9.067e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:15,8:10,7 +chr3 194325045 . CT C 0 PASS DP=52;GPV=1;SPV=0.18371;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:14,2:13,1 +chr3 194673961 . ACCTTAC A 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,1:14,3 +chr3 194680228 . G C 0 PASS DP=59;GPV=1;SPV=0.0026031;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,4:12,3 +chr3 195480294 . T A 0 PASS DP=183;GPV=1;SPV=0.015268;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:85,11:37,6:48,5 +chr3 195482428 . G C 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:5,2:19,2 +chr3 195489285 . G A 0 PASS DP=88;GPV=1;SPV=0.024281;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:23,3:23,4 +chr3 195499352 . C T 0 PASS DP=106;GPV=1;SPV=0.0032428;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:24,6:25,3 +chr3 195500853 . A T 0 PASS DP=162;GPV=1;SPV=0.038044;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:36,3:34,5 +chr3 195619095 . G A 0 PASS DP=84;GPV=1;SPV=0.009035;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,17:15,14:19,3 +chr3 195627434 . T TCCACTGAA 0 PASS DP=84;GPV=1;SPV=0.0066776;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,7:17,8 +chr3 195637214 . GGT G 0 PASS DP=132;GPV=1;SPV=0.0050154;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:22,8:41,4 +chr3 195960350 . A G 0 PASS DP=122;GPV=1;SPV=0.00044669;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:49,22:19,3:30,19 +chr3 195962048 . G T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr3 195966515 . C A 0 PASS DP=78;GPV=1;SPV=0.057873;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:23,1:17,4 +chr3 196173255 . T C 0 PASS DP=47;GPV=1;SPV=0.021053;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:12,2:2,6 +chr3 197658326 . G A 0 PASS DP=53;GPV=1;SPV=0.033605;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,7:13,1 +chr4 11120 . C A 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3 +chr4 11422 . G A 0 PASS DP=47;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,4:6,7 +chr4 26921 . T A 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:32,4:3,0 +chr4 37547 . AG A 0 PASS DP=305;GPV=1;SPV=0.036501;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:152,18:68,7:84,11 +chr4 60317 . G A 0 PASS DP=313;GPV=1;SPV=0.030421;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:184,21:93,13:91,8 +chr4 64786 . T G 0 PASS DP=323;GPV=1;SPV=0.0090726;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:171,26:90,15:81,11 +chr4 1152938 . C CTT 0 PASS DP=26;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,5:3,3 +chr4 1266472 . C G 0 PASS DP=52;GPV=1;SPV=0.0003248;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:4,8:14,5 +chr4 1680330 . A C 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3 +chr4 1786308 . C T 0 PASS DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:12,5:15,11 +chr4 2020796 . T TC 0 PASS DP=51;GPV=1;SPV=0.074501;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,8:1,4:13,4 +chr4 2205874 . CA C 0 PASS DP=40;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,8:6,5 +chr4 2618591 . C CT 0 PASS DP=37;GPV=1;SPV=0.0011112;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1 +chr4 4253875 . A G 0 PASS DP=29;GPV=1;SPV=0.02039;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2 +chr4 4294877 . G A 0 PASS DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,1:8,5 +chr4 4677535 . A C 0 PASS DP=34;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:4,1:3,1 +chr4 4697798 . C CCTATCTAT 0 PASS DP=59;GPV=1;SPV=0.044564;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,3:15,6 +chr4 6003949 . A ATGG 0 PASS DP=42;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:7,5:3,1 +chr4 6694969 . T C 0 PASS DP=54;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,2:2,1:2,1 +chr4 8322525 . A T 0 PASS DP=66;GPV=1;SPV=0.0011349;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:15,4:13,8 +chr4 8336314 . A C 0 PASS DP=62;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:1,2:1,1:0,1 +chr4 8348798 . TAAATAAAATA T 0 PASS DP=45;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,8:9,5 +chr4 8931584 . C CA 0 PASS DP=33;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,3:3,1 +chr4 9324113 . T C 0 PASS DP=469;GPV=1;SPV=0.027626;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:277,33:267,32:10,1 +chr4 9524302 . CTAGATACAGAGTGCCGACTGGTG C 0 PASS DP=72;GPV=1;SPV=0.0014616;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:12,7:16,2 +chr4 9634595 . CAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:7,8:3,2 +chr4 9719506 . G C 0 PASS DP=65;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,4:11,5 +chr4 10175285 . G C 0 PASS DP=60;GPV=1;SPV=0.00021886;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:13,5:9,9 +chr4 11667594 . C CT 0 PASS DP=52;GPV=1;SPV=0.00018263;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,17:7,8:5,9 +chr4 11796214 . T C 0 PASS DP=61;GPV=1;SPV=0.039894;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,3:13,2 +chr4 12715070 . ATT A 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,3:8,3 +chr4 14491648 . T TATTTATATATAC 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,6:11,4 +chr4 14813881 . A T 0 PASS DP=69;GPV=1;SPV=0.019687;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,4:11,8 +chr4 15177559 . G A 0 PASS DP=41;GPV=1;SPV=0.022451;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,2:11,4 +chr4 15232096 . T C 0 PASS DP=86;GPV=1;SPV=2.3491e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:14,7:17,8 +chr4 16159514 . A G 0 PASS DP=49;GPV=1;SPV=0.0028455;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,4:9,6 +chr4 16440716 . TC T 0 PASS DP=50;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:11,4:16,1 +chr4 16586509 . C A 0 PASS DP=49;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:12,3:5,1 +chr4 16819095 . T C 0 PASS DP=55;GPV=1;SPV=0.040165;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,7:11,1 +chr4 17311735 . C A 0 PASS DP=24;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,3:3,2 +chr4 17569577 . CCACA C 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:5,7:13,3 +chr4 17742137 . AATATATAT A 0 PASS DP=33;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:9,5:3,4 +chr4 18327173 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr4 19232748 . A G 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:6,3:16,1 +chr4 20181645 . C T 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,3:16,1 +chr4 20311417 . G A 0 PASS DP=70;GPV=1;SPV=0.0065171;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,3:16,5 +chr4 21501248 . T A 0 PASS DP=53;GPV=1;SPV=0.0088608;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:6,4:6,3 +chr4 21750776 . G A 0 PASS DP=62;GPV=1;SPV=0.0086866;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:14,4:12,3 +chr4 21924243 . C CT 0 PASS DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,8:1,1 +chr4 21928129 . C T 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1 +chr4 22061733 . G GTTT 0 PASS DP=59;GPV=1;SPV=0.0055563;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,16:12,14:8,2 +chr4 22675296 . T G 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3 +chr4 23042370 . C A 0 PASS DP=74;GPV=1;SPV=0.00018253;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,9:12,1 +chr4 23381713 . A G 0 PASS DP=51;GPV=1;SPV=0.0011278;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:9,12:5,5 +chr4 23623876 . A AAAATAAAT 0 PASS DP=45;GPV=1;SPV=0.048514;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:5,3:9,4 +chr4 24137863 . C T 0 PASS DP=61;GPV=1;SPV=2.6311e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,11:9,4 +chr4 25581959 . C CAAAA 0 PASS DP=32;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:4,4:1,1 +chr4 25612981 . T TAC 0 PASS DP=34;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,3:4,1 +chr4 26851331 . A G 0 PASS DP=63;GPV=1;SPV=0.0064763;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:9,4:15,13 +chr4 27571764 . T A 0 PASS DP=59;GPV=1;SPV=0.0016548;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:15,4:10,8 +chr4 28055902 . AAAAAAT A 0 PASS DP=56;GPV=1;SPV=0.0082274;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,7:7,5 +chr4 28055918 . C T 0 PASS DP=51;GPV=1;SPV=0.0045608;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,12:10,7:5,5 +chr4 28221328 . TCTCTA T 0 PASS DP=54;GPV=1;SPV=0.0013843;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,3:8,4 +chr4 28806359 . A T 0 PASS DP=27;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,6:2,5:0,1 +chr4 29179898 . G T 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,3:14,7 +chr4 29531916 . G A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,2:8,2 +chr4 30278649 . A G 0 PASS DP=27;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,6:3,4 +chr4 32005446 . A ATTATTATTATTATTATTATTAT 0 PASS DP=38;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,9:3,3:6,6 +chr4 32495047 . C CT 0 PASS DP=63;GPV=1;SPV=0.004889;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,16:19,7:11,9 +chr4 32839548 . AT A 0 PASS DP=25;GPV=1;SPV=0.15826;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2 +chr4 35765386 . C G 0 PASS DP=66;GPV=1;SPV=0.0001695;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:19,8:4,4 +chr4 35937283 . C G 0 PASS DP=58;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:9,3:12,6 +chr4 35979284 . T TA 0 PASS DP=45;GPV=1;SPV=0.0051998;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,10:4,8:6,2 +chr4 38235026 . G A 0 PASS DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,9:12,3 +chr4 38461959 . CAA C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,8:4,2 +chr4 39640987 . C CT 0 PASS DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,4:2,4 +chr4 39664216 . T TGTGTGTGCGCGC 0 PASS DP=64;GPV=1;SPV=0.046332;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,12:12,7:13,5 +chr4 39796168 . C CA 0 PASS DP=31;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,10:3,6:6,4 +chr4 40660610 . C CA 0 PASS DP=46;GPV=1;SPV=0.0070519;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:11,8:4,3 +chr4 41350247 . C G 0 PASS DP=79;GPV=1;SPV=4.5974e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:16,7:14,9 +chr4 41706637 . CTTATTA C 0 PASS DP=36;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,9:5,6:5,3 +chr4 42436540 . C G 0 PASS DP=64;GPV=1;SPV=0.00048494;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:8,9:18,5 +chr4 45024881 . CTA C 0 PASS DP=84;GPV=1;SPV=0.023494;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,8:19,3:14,5 +chr4 47195468 . TA T 0 PASS DP=56;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,4:10,3:9,1 +chr4 48620601 . T G 0 PASS DP=66;GPV=1;SPV=0.00025426;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,8:13,4 +chr4 49098215 . G A 0 PASS DP=75;GPV=1;SPV=0.045325;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,10:11,4:17,6 +chr4 49143770 . A G 0 PASS DP=81;GPV=1;SPV=0.063808;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,5:11,2:31,3 +chr4 49168402 . G T 0 PASS DP=153;GPV=1;SPV=0.013719;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:71,16:27,4:44,12 +chr4 49174541 . C T 0 PASS DP=105;GPV=1;SPV=0.046363;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:25,5:23,7 +chr4 49265281 . C T 0 PASS DP=153;GPV=1;SPV=0.038078;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:69,13:26,4:43,9 +chr4 49265909 . C T 0 PASS DP=232;GPV=1;SPV=0.031461;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:108,13:67,8:41,5 +chr4 49266927 . T A 0 PASS DP=207;GPV=1;SPV=0.040817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:107,13:60,7:47,6 +chr4 49270687 . G T 0 PASS DP=496;GPV=1;SPV=0.035757;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:235,43:139,24:96,19 +chr4 49271027 . C T 0 PASS DP=521;GPV=1;SPV=0.0033901;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:299:243,56:113,32:130,24 +chr4 49271076 . C T 0 PASS DP=595;GPV=1;SPV=0.00029602;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:330:275,55:148,32:127,23 +chr4 49490706 . G A 0 PASS DP=518;GPV=1;SPV=0.0013516;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:250,46:135,20:115,26 +chr4 49493061 . A AT 0 PASS DP=499;GPV=1;SPV=0.031589;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:226,34:93,22:133,12 +chr4 49513797 . G A 0 PASS DP=4660;GPV=1;SPV=0.036427;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2603:2324,279:771,89:1553,190 +chr4 49519726 . C T 0 PASS DP=64;GPV=1;SPV=0.015039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:16,2:8,7 +chr4 49523382 . C T 0 PASS DP=144;GPV=1;SPV=0.0050121;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:30,1:38,7 +chr4 49527051 . C T 0 PASS DP=72;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:20,2:15,3 +chr4 49532808 . C G 0 PASS DP=121;GPV=1;SPV=0.015725;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:20,7:32,9 +chr4 49554084 . C T 0 PASS DP=102;GPV=1;SPV=0.0093787;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:18,8:25,1 +chr4 49565377 . A T 0 PASS DP=107;GPV=1;SPV=0.045294;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:21,5:21,8 +chr4 49574641 . A G 0 PASS DP=576;GPV=1;SPV=0.0052595;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:308:256,52:139,26:117,26 +chr4 49591857 . T G 0 PASS DP=214;GPV=1;SPV=0.0018119;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:91,26:27,15:64,11 +chr4 49607800 . A AAC 0 PASS DP=146;GPV=1;SPV=0.0018273;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:50,13:28,6:22,7 +chr4 49612039 . T G 0 PASS DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:22,4:5,1 +chr4 49653269 . G GGGAATGGAAT 0 PASS DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,4:7,2 +chr4 49731167 . C A 0 PASS DP=364;GPV=1;SPV=0.013365;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:204,24:149,21:55,3 +chr4 49787442 . T A 0 PASS DP=93;GPV=1;SPV=0.040768;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:7,1:38,4 +chr4 49792264 . C G 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:23,4:2,0 +chr4 49849709 . A G 0 PASS DP=67;GPV=1;SPV=0.037054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:15,2:21,5 +chr4 49850379 . T A 0 PASS DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:21,4:4,1 +chr4 50198909 . T C 0 PASS DP=100;GPV=1;SPV=0.0014098;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,13:20,11:20,2 +chr4 50560189 . T C 0 PASS DP=94;GPV=1;SPV=0.0027297;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:19,6:22,7 +chr4 50866953 . T C 0 PASS DP=54;GPV=1;SPV=0.18626;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:1,0:31,4 +chr4 51119009 . T A 0 PASS DP=184;GPV=1;SPV=0.019323;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:18,8:68,10 +chr4 51169304 . T G 0 PASS DP=54;GPV=1;SPV=0.16556;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:0,0:31,4 +chr4 51274462 . G C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr4 51537779 . C T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr4 51560944 . A T 0 PASS DP=99;GPV=1;SPV=0.038098;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:30,6:29,2 +chr4 51640205 . T C 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4 +chr4 52084051 . A C 0 PASS DP=68;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:41:1,3:0,1:1,2 +chr4 52309381 . C CAAAAA 0 PASS DP=27;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:3,7:0,1 +chr4 52733556 . TATACATATAC T 0 PASS DP=66;GPV=1;SPV=0.036255;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,6:11,3 +chr4 53417767 . T A 0 PASS DP=43;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:1,1:2,1 +chr4 53788426 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:4,4:7,1 +chr4 53880669 . A C 0 PASS DP=48;GPV=1;SPV=0.002399;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,4:6,9 +chr4 54408971 . C G 0 PASS DP=77;GPV=1;SPV=0.0022452;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:21,9:9,3 +chr4 55535739 . C CTT 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,7:2,2 +chr4 56285267 . G C 0 PASS DP=64;GPV=1;SPV=0.010825;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,4:11,3 +chr4 56862339 . AAG A 0 PASS DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,2:13,2 +chr4 56915242 . T A 0 PASS DP=30;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,4:8,1 +chr4 57195392 . A T 0 PASS DP=63;GPV=1;SPV=0.0019889;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:14,6:12,4 +chr4 58516672 . A AACACAC 0 PASS DP=49;GPV=1;SPV=0.0044583;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,2:8,8 +chr4 58780188 . G A 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2 +chr4 58849888 . C T 0 PASS DP=63;GPV=1;SPV=0.0039777;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,7:15,2 +chr4 59244838 . C CA 0 PASS DP=40;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,11:8,7:6,4 +chr4 59519025 . ACC A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr4 59905347 . A ATG 0 PASS DP=40;GPV=1;SPV=0.026928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,3:5,2 +chr4 60611412 . GAGAA G 0 PASS DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2 +chr4 61072909 . C CTATTATTAT 0 PASS DP=47;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,12:2,5:13,7 +chr4 61215541 . ATT A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:7,1:0,5 +chr4 62996598 . T C 0 PASS DP=61;GPV=1;SPV=0.002714;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,3:14,4 +chr4 64512497 . C CAAA 0 PASS DP=26;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1 +chr4 65129734 . G C 0 PASS DP=63;GPV=1;SPV=3.3183e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,7:7,6 +chr4 65365649 . C CTATA 0 PASS DP=25;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:4,3:1,1 +chr4 65465456 . GA G 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,1:8,3 +chr4 65995025 . C A 0 PASS DP=38;GPV=1;SPV=0.027424;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,1:9,6 +chr4 66169113 . G GT 0 PASS DP=48;GPV=1;SPV=2.6712e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,14:4,9:7,5 +chr4 67121416 . T TTCTC 0 PASS DP=45;GPV=1;SPV=0.018904;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,1:10,7 +chr4 67439786 . G T 0 PASS DP=75;GPV=1;SPV=6.7856e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,7:11,8 +chr4 67635750 . T TCTTGTTGTTCAATCTAGTAATTTCTCTCTTTTCTA 0 PASS DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:8,4:6,2 +chr4 69064106 . GAAAGAA G 0 PASS DP=33;GPV=1;SPV=0.014159;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,4:3,2 +chr4 70520010 . AT A 0 PASS DP=59;GPV=1;SPV=0.0048555;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:13,4:8,13 +chr4 71011232 . CT C 0 PASS DP=29;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2 +chr4 72227238 . T TA 0 PASS DP=53;GPV=1;SPV=0.019351;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,12:11,5:8,7 +chr4 72667860 . T A 0 PASS DP=57;GPV=1;SPV=0.0022409;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,4:9,5 +chr4 73270285 . ATT A 0 PASS DP=30;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:7,2:6,3 +chr4 73788258 . GGAGGAGGATGAGAAA G 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:6,5:1,3 +chr4 76646229 . T A 0 PASS DP=52;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,2:9,3 +chr4 76928092 . C CA 0 PASS DP=37;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1 +chr4 77595098 . AT A 0 PASS DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:9,7:5,7 +chr4 78137046 . GA G 0 PASS DP=64;GPV=1;SPV=1.3094e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,21:7,7:14,14 +chr4 78465956 . C A 0 PASS DP=61;GPV=1;SPV=0.0011625;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4 +chr4 79547385 . C G 0 PASS DP=67;GPV=1;SPV=2.3532e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,5:9,7 +chr4 80208540 . A AACAC 0 PASS DP=52;GPV=1;SPV=0.032319;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:18,8:5,2 +chr4 80622916 . G T 0 PASS DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,5:10,4 +chr4 80651704 . T TTGTGTGTGTG 0 PASS DP=43;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,12:5,6:3,6 +chr4 81227215 . C T 0 PASS DP=68;GPV=1;SPV=0.00017189;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,5:13,7 +chr4 82077994 . G A 0 PASS DP=35;GPV=1;SPV=0.24625;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:6,1:13,3 +chr4 82318950 . AGAAG A 0 PASS DP=51;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:5,2:9,2 +chr4 82599026 . CAA C 0 PASS DP=59;GPV=1;SPV=0.034956;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,5:9,1:9,4 +chr4 83579077 . T C 0 PASS DP=20;GPV=1;SPV=0.069231;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,1:3,3 +chr4 84121099 . G T 0 PASS DP=67;GPV=1;SPV=0.016437;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,8:20,2 +chr4 85598897 . A T 0 PASS DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6 +chr4 85888402 . G GA 0 PASS DP=37;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:9,8:2,1 +chr4 86842707 . AAAAAG A 0 PASS DP=44;GPV=1;SPV=0.012802;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,1:9,9 +chr4 86842815 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,3:5,1 +chr4 87616268 . C T 0 PASS DP=45;GPV=1;SPV=0.00068054;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:7,10:3,4 +chr4 87923765 . A AT 0 PASS DP=43;GPV=1;SPV=0.038146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,7:4,1 +chr4 88295154 . C G 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,3:13,6 +chr4 89356553 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:1,2:10,7 +chr4 89356569 . TTTTC T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,2:8,5 +chr4 89846079 . A G 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,5:12,1 +chr4 89903897 . G GAA 0 PASS DP=40;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:10,7:2,1 +chr4 91496796 . AT A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,1:5,3 +chr4 91974275 . T A 0 PASS DP=66;GPV=1;SPV=2.0279e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:10,7:12,10 +chr4 91997999 . G A 0 PASS DP=81;GPV=1;SPV=0.00013424;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:19,8:14,7 +chr4 92083882 . C T 0 PASS DP=59;GPV=1;SPV=0.00031695;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,5:12,7 +chr4 92646888 . C T 0 PASS DP=82;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:7,8:2,3:5,5 +chr4 93870622 . C CAAAAAA 0 PASS DP=34;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,6:6,5:6,1 +chr4 95087003 . T C 0 PASS DP=39;GPV=1;SPV=0.0083551;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:14,9:2,1 +chr4 95328040 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,10:1,9:3,1 +chr4 98020050 . G C 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,5:11,2 +chr4 98828584 . GA G 0 PASS DP=36;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,5:1,3:2,2 +chr4 99516244 . C G 0 PASS DP=60;GPV=1;SPV=0.00025356;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:8,8:13,4 +chr4 99742985 . G A 0 PASS DP=51;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,6:9,2 +chr4 101164244 . CCAT C 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2 +chr4 101426865 . CA C 0 PASS DP=27;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:2,2:3,4 +chr4 101664294 . G T 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,4:13,1 +chr4 103237571 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3 +chr4 103799073 . T C 0 PASS DP=65;GPV=1;SPV=7.4062e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:17,28:5,12:12,16 +chr4 103809930 . G T 0 PASS DP=61;GPV=1;SPV=3.4578e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:4,9:13,9 +chr4 105008884 . A ATT 0 PASS DP=37;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,7:9,4 +chr4 105204234 . T TAC 0 PASS DP=47;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,6:10,3:11,3 +chr4 106633854 . C CA 0 PASS DP=41;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,12:3,2:2,10 +chr4 107775491 . C A 0 PASS DP=55;GPV=1;SPV=0.0018234;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:9,3:10,5 +chr4 108409382 . G A 0 PASS DP=52;GPV=1;SPV=0.19341;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3 +chr4 108448970 . A AAAAAG 0 PASS DP=26;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,3:3,3 +chr4 108600907 . AT A 0 PASS DP=48;GPV=1;SPV=0.030759;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr4 108675699 . C T 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr4 109314581 . G A 0 PASS DP=64;GPV=1;SPV=0.0022996;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,6:11,4 +chr4 109328151 . G C 0 PASS DP=52;GPV=1;SPV=0.00082953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,8:11,2 +chr4 110186820 . A AT 0 PASS DP=34;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:4,4:5,3 +chr4 110256884 . C CT 0 PASS DP=56;GPV=1;SPV=0.039872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,10:5,6:15,4 +chr4 110381304 . CTTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1 +chr4 112052387 . GCA G 0 PASS DP=67;GPV=1;SPV=0.0025635;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,7:10,3 +chr4 112052390 . G T 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,7:10,2 +chr4 112090482 . C A 0 PASS DP=75;GPV=1;SPV=0.0010226;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:17,5:13,5 +chr4 113163770 . A C 0 PASS DP=26;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:3,1:3,1 +chr4 113459638 . CT C 0 PASS DP=43;GPV=1;SPV=0.006592;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2 +chr4 114623115 . A T 0 PASS DP=70;GPV=1;SPV=0.0085883;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:18,2:12,5 +chr4 114916536 . C CTG 0 PASS DP=50;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,11:10,8:5,3 +chr4 118251125 . A AT 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,4:10,5 +chr4 119789253 . A T 0 PASS DP=63;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,6:11,4:4,2 +chr4 119789254 . C T 0 PASS DP=61;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,4:11,2:5,2 +chr4 120227229 . G C 0 PASS DP=85;GPV=1;SPV=0.00019041;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:21,7:13,6 +chr4 120307384 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:11,4:3,2 +chr4 121017432 . AC A 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2 +chr4 121635027 . T C 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,3:4,3 +chr4 122720887 . T TA 0 PASS DP=52;GPV=1;SPV=0.019351;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,7:7,5 +chr4 124715670 . T TTATATG 0 PASS DP=54;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,11:7,5:3,6 +chr4 125715759 . AAAC A 0 PASS DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,4:10,1 +chr4 126584511 . A ATT 0 PASS DP=28;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:5,6:2,1 +chr4 126663898 . A AAAGATATATATATAT 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2 +chr4 129479178 . CTTCT C 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,5:8,4 +chr4 130715213 . C A 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,7:13,3 +chr4 131448941 . A G 0 PASS DP=71;GPV=1;SPV=0.00094808;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,6:13,3 +chr4 131735926 . A T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr4 131743490 . G A 0 PASS DP=193;GPV=1;SPV=0.013808;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:94,12:61,8:33,4 +chr4 131749715 . G C 0 PASS DP=218;GPV=1;SPV=0.014927;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:107,17:54,11:53,6 +chr4 131814343 . A G 0 PASS DP=76;GPV=1;SPV=0.072687;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:25,4:19,2 +chr4 132636067 . G A 0 PASS DP=31;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr4 132894907 . T TA 0 PASS DP=45;GPV=1;SPV=0.0014755;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,2:7,7 +chr4 132931526 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.001806;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,12:0,9:2,3 +chr4 134024923 . AT A 0 PASS DP=37;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,5:3,3 +chr4 135417094 . T C 0 PASS DP=22;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,3:1,1:4,2 +chr4 136148051 . G A 0 PASS DP=76;GPV=1;SPV=0.028768;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:19,2:21,5 +chr4 136153727 . T TTATATATATA 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,3:0,3 +chr4 136620055 . GTATA G 0 PASS DP=42;GPV=1;SPV=0.0030458;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,8:10,3 +chr4 137930087 . A T 0 PASS DP=65;GPV=1;SPV=0.0018725;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,4:15,7 +chr4 139405226 . A G 0 PASS DP=64;GPV=1;SPV=9.3228e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:9,10:11,8 +chr4 140776840 . T C 0 PASS DP=59;GPV=1;SPV=0.0010222;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,6:13,5 +chr4 141426356 . A ATCTG 0 PASS DP=58;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,10:4,7:7,3 +chr4 143036415 . T G 0 PASS DP=82;GPV=1;SPV=0.00041078;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:16,3:16,8 +chr4 143123355 . T G 0 PASS DP=71;GPV=1;SPV=0.002428;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:14,3:17,7 +chr4 143956227 . T G 0 PASS DP=44;GPV=1;SPV=0.044088;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2 +chr4 145835562 . A T 0 PASS DP=33;GPV=1;SPV=0.0084353;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,3:5,2 +chr4 145835563 . A G 0 PASS DP=32;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr4 145835564 . T C 0 PASS DP=34;GPV=1;SPV=0.010792;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,3:4,2 +chr4 147541067 . CA C 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,4:3,1 +chr4 147621985 . C CT 0 PASS DP=51;GPV=1;SPV=0.0012415;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,12:6,9:12,3 +chr4 148038938 . G GTTTTGAAACTTAGTGTTAT 0 PASS DP=48;GPV=1;SPV=0.042001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,3:4,3 +chr4 149269330 . T A 0 PASS DP=20;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:4,1:2,1 +chr4 149374997 . GT G 0 PASS DP=60;GPV=1;SPV=0.037344;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:13,3:20,5 +chr4 151097439 . A ATT 0 PASS DP=50;GPV=1;SPV=0.0066911;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:11,7:8,5 +chr4 151445849 . A AATATATATATATAT 0 PASS DP=22;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,5:1,4 +chr4 151653358 . C G 0 PASS DP=62;GPV=1;SPV=0.0080354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,4:12,5 +chr4 151765852 . C CAGAGAGAGAG 0 PASS DP=29;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,7:2,6:2,1 +chr4 152617531 . A ATG 0 PASS DP=40;GPV=1;SPV=0.073359;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,3:6,1 +chr4 153117030 . T TA 0 PASS DP=52;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,12:8,7:4,5 +chr4 153346605 . G C 0 PASS DP=47;GPV=1;SPV=0.0025344;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,7:11,3 +chr4 153390889 . A ATATGTGTGTGTG 0 PASS DP=32;GPV=1;SPV=0.0012716;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:4,3:2,8 +chr4 154875182 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.0074494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,5:5,2 +chr4 155552235 . G C 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,3:13,2 +chr4 155957237 . T G 0 PASS DP=22;GPV=1;SPV=0.0035042;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:0,2:3,7 +chr4 156439096 . A C 0 PASS DP=61;GPV=1;SPV=0.00027127;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,6:12,8 +chr4 157395225 . AGAG A 0 PASS DP=49;GPV=1;SPV=0.046659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:16,6:5,2 +chr4 157665341 . T TCACACACACACACACACA 0 PASS DP=35;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:2,5:5,2 +chr4 158529250 . G T 0 PASS DP=60;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,4:8,2:5,2 +chr4 158695714 . T C 0 PASS DP=62;GPV=1;SPV=0.00015402;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,3:9,6 +chr4 159062697 . G GTCTCTCTCTCTCTCTCTCTCTCTC 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,2:9,2 +chr4 159385405 . TAA T 0 PASS DP=53;GPV=1;SPV=0.0011292;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,3:6,10 +chr4 159808521 . G C 0 PASS DP=43;GPV=1;SPV=0.0010229;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,8:5,2 +chr4 160144525 . TTTG T 0 PASS DP=26;GPV=1;SPV=0.46667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:1,1:4,1 +chr4 160547231 . G T 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,4:11,7 +chr4 160633007 . T C 0 PASS DP=70;GPV=1;SPV=1.9551e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,6:11,7 +chr4 161332099 . T A 0 PASS DP=62;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,3:2,2:3,1 +chr4 162453267 . T C 0 PASS DP=60;GPV=1;SPV=0.0087152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,5:12,2 +chr4 162621887 . T C 0 PASS DP=71;GPV=1;SPV=0.00090285;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,4:12,7 +chr4 163448601 . A C 0 PASS DP=73;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,3:1,1:2,2 +chr4 163688370 . C T 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:9,11:8,5 +chr4 164035933 . A T 0 PASS DP=52;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,2:4,1:0,1 +chr4 164199681 . C CAGAGAGAGAGAGAG 0 PASS DP=29;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:2,1:1,1 +chr4 164313182 . CA C 0 PASS DP=44;GPV=1;SPV=0.0053975;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:14,9:1,5 +chr4 164735546 . ATTTTT A 0 PASS DP=32;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,3:3,2 +chr4 165707190 . CA C 0 PASS DP=33;GPV=1;SPV=0.022595;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,5:3,1 +chr4 166251139 . A T 0 PASS DP=59;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:1,2:1,1:0,1 +chr4 166491022 . A G 0 PASS DP=38;GPV=1;SPV=0.0033127;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,7:4,3 +chr4 166603720 . CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=23;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:2,4:5,1 +chr4 166603732 . A C 0 PASS DP=30;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1 +chr4 167345604 . G A 0 PASS DP=52;GPV=1;SPV=0.010975;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,5:10,8 +chr4 168333164 . CAA C 0 PASS DP=50;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:7,8:5,1 +chr4 169087473 . A ATT 0 PASS DP=32;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:5,5:0,3 +chr4 169233248 . CA C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2 +chr4 169355377 . C T 0 PASS DP=64;GPV=1;SPV=0.00031521;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,9:14,5 +chr4 169744966 . A C 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chr4 170102794 . G A 0 PASS DP=55;GPV=1;SPV=0.090553;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,6:6,1:17,5 +chr4 170703373 . A G 0 PASS DP=74;GPV=1;SPV=0.0078314;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:15,6:19,2 +chr4 171798904 . A ATATT 0 PASS DP=59;GPV=1;SPV=0.012781;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,7:11,4 +chr4 172057729 . T A 0 PASS DP=30;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,5:5,1 +chr4 172503526 . G GTATATATATATATA 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:3,3:12,2 +chr4 174296763 . A AT 0 PASS DP=38;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:4,3:5,2 +chr4 176325561 . T TAA 0 PASS DP=42;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:10,3:8,3 +chr4 177185005 . AAG A 0 PASS DP=48;GPV=1;SPV=0.18481;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:23,3:5,1 +chr4 177238841 . G T 0 PASS DP=79;GPV=1;SPV=1.8646e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,7:10,7 +chr4 177238842 . T C 0 PASS DP=77;GPV=1;SPV=1.6571e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:9,7:11,7 +chr4 177417940 . T C 0 PASS DP=34;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,12:6,9:3,3 +chr4 178300739 . CAA C 0 PASS DP=35;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:5,5:5,1 +chr4 179137490 . G C 0 PASS DP=79;GPV=1;SPV=0.0055583;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:15,3:20,5 +chr4 179279208 . TTTTC T 0 PASS DP=59;GPV=1;SPV=0.0090372;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:17,8:13,5 +chr4 180290348 . C CTT 0 PASS DP=40;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,4:11,3:4,1 +chr4 181031797 . G A 0 PASS DP=48;GPV=1;SPV=0.041183;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,3:10,5 +chr4 181130688 . G A 0 PASS DP=34;GPV=1;SPV=0.0069381;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,4:4,4 +chr4 181280528 . T TTTTAAAATAATTGATGAAATGAGGCAGATGTG 0 PASS DP=27;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,3:2,2 +chr4 181801651 . AATATAT A 0 PASS DP=21;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:3,3:1,3 +chr4 181803939 . C CAA 0 PASS DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1 +chr4 182293458 . G A 0 PASS DP=77;GPV=1;SPV=0.00057391;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:13,6:19,6 +chr4 183013415 . TTCCCC T 0 PASS DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:1,6:6,5 +chr4 185031220 . G GA 0 PASS DP=54;GPV=1;SPV=0.0054758;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:9,5:7,8 +chr4 185053316 . GTT G 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1 +chr4 185220484 . C CTT 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,3:9,6 +chr4 185426879 . CAAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:5,5:6,3 +chr4 185606854 . C A 0 PASS DP=72;GPV=1;SPV=0.0057699;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,4:13,1 +chr4 186905242 . T TTC 0 PASS DP=54;GPV=1;SPV=0.0025855;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7 +chr4 186911004 . T A 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,4:9,4 +chr4 186968630 . C G 0 PASS DP=50;GPV=1;SPV=0.046386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,4:9,1 +chr4 187013968 . A AGT 0 PASS DP=44;GPV=1;SPV=0.12376;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,6:14,4:9,2 +chr4 187024475 . C A 0 PASS DP=49;GPV=1;SPV=0.028248;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,1:7,3 +chr4 188891730 . A ATTT 0 PASS DP=43;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,9:6,8:4,1 +chr4 188974981 . A G 0 PASS DP=30;GPV=1;SPV=0.40598;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,3:9,2:9,1 +chr4 189688328 . A T 0 PASS DP=73;GPV=1;SPV=0.038332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,4:18,1 +chr4 190032876 . T C 0 PASS DP=42;GPV=1;SPV=0.0010244;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:6,11:3,2 +chr4 190097528 . T C 0 PASS DP=351;GPV=1;SPV=0.020604;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:181,26:89,12:92,14 +chr4 190106016 . T C 0 PASS DP=97;GPV=1;SPV=0.019271;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:46,7:9,2 +chr4 190200729 . C G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr4 190204153 . T C 0 PASS DP=97;GPV=1;SPV=0.025299;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:4,4:40,11 +chr5 89889 . G C 0 PASS DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3 +chr5 196677 . C T 0 PASS DP=44;GPV=1;SPV=0.01531;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,1:12,7 +chr5 230013 . TAGAGTTA T 0 PASS DP=78;GPV=1;SPV=0.023776;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:20,3:13,2 +chr5 415365 . C G 0 PASS DP=49;GPV=1;SPV=0.19833;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:8,1:18,2 +chr5 814097 . A G 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr5 1339870 . C A 0 PASS DP=55;GPV=1;SPV=0.046608;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:19,6:4,1 +chr5 2128134 . G A 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,4:11,7 +chr5 2585334 . AGATG A 0 PASS DP=27;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:2,5:1,4 +chr5 2928097 . A G 0 PASS DP=60;GPV=1;SPV=3.6299e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:9,4:11,14 +chr5 3117652 . A C 0 PASS DP=48;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,4:12,2:8,2 +chr5 3233520 . TAA T 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4 +chr5 3249463 . C CGT 0 PASS DP=52;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:6,10:15,6 +chr5 3324001 . G T 0 PASS DP=71;GPV=1;SPV=0.035683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,1:16,7 +chr5 5493008 . A G 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 5904762 . G A 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,2:7,3 +chr5 7113148 . ATT A 0 PASS DP=53;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,8:6,6:5,2 +chr5 7281323 . A G 0 PASS DP=60;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:5,3:2,2:3,1 +chr5 7633573 . T G 0 PASS DP=78;GPV=1;SPV=0.010155;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:21,7:20,3 +chr5 7761147 . TC T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1 +chr5 7798584 . C T 0 PASS DP=52;GPV=1;SPV=0.37283;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,5:9,2:11,3 +chr5 8375406 . A G 0 PASS DP=60;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,2:12,2 +chr5 10099947 . C CT 0 PASS DP=29;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,6:5,1 +chr5 10528489 . C CA 0 PASS DP=35;GPV=1;SPV=0.0036508;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,9:1,5:0,4 +chr5 10592452 . A T 0 PASS DP=32;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:2,1:2,1 +chr5 10630886 . AG A 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,2:19,2 +chr5 11312684 . A ACACTCCCCATATACCCTCACCCTCAC 0 PASS DP=30;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,3:9,2 +chr5 11541851 . G A 0 PASS DP=24;GPV=1;SPV=0.018593;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,3:7,4 +chr5 11600705 . C CAA 0 PASS DP=38;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:8,7:4,1 +chr5 11933508 . A AG 0 PASS DP=48;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:12,3:14,1 +chr5 12071303 . A C 0 PASS DP=65;GPV=1;SPV=0.0076491;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:9,5:20,3 +chr5 13610200 . A G 0 PASS DP=80;GPV=1;SPV=3.8991e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:5,9:15,11 +chr5 14548425 . CA C 0 PASS DP=34;GPV=1;SPV=0.037934;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2 +chr5 15010041 . A C 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1 +chr5 15869499 . G A 0 PASS DP=59;GPV=1;SPV=0.015769;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,5:14,2 +chr5 16453561 . A T 0 PASS DP=27;GPV=1;SPV=0.32967;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:3,3:4,1 +chr5 17420129 . A ATGTGTGTGTG 0 PASS DP=44;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:12,3:9,2 +chr5 17521046 . C T 0 PASS DP=491;GPV=1;SPV=0.0058033;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:303:250,53:186,47:64,6 +chr5 18054923 . A ATT 0 PASS DP=33;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,7:5,2 +chr5 18584175 . CA C 0 PASS DP=30;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,3:4,3 +chr5 19748112 . C CAAAAAAA 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr5 20847903 . TACACACAC T 0 PASS DP=37;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,6:7,3:3,3 +chr5 20864445 . T C 0 PASS DP=95;GPV=1;SPV=0.0073164;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:15,9:18,5 +chr5 20864483 . C CTTAT 0 PASS DP=89;GPV=1;SPV=0.0025805;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,8:16,3 +chr5 20942282 . C A 0 PASS DP=66;GPV=1;SPV=0.00068283;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:10,7:18,7 +chr5 21026379 . C CA 0 PASS DP=38;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,6:14,4:8,2 +chr5 21223000 . C CTT 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3 +chr5 21719557 . G A 0 PASS DP=68;GPV=1;SPV=0.24484;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,4:9,3:17,1 +chr5 22355524 . AT A 0 PASS DP=49;GPV=1;SPV=0.12446;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,4:15,1 +chr5 22492351 . T A 0 PASS DP=54;GPV=1;SPV=0.00012306;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:6,8:9,10 +chr5 22693655 . A C 0 PASS DP=59;GPV=1;SPV=0.00079701;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,6:11,3 +chr5 23542017 . ATTTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,2:6,5 +chr5 23753775 . T TTTATTATTATTATTA 0 PASS DP=52;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:7,6:12,4 +chr5 24145683 . AAAAGAAAG A 0 PASS DP=48;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,10:7,7:4,3 +chr5 25737762 . T A 0 PASS DP=59;GPV=1;SPV=0.00088019;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:17,4:7,9 +chr5 26157308 . GTTT G 0 PASS DP=29;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:6,3:1,2 +chr5 27044503 . C G 0 PASS DP=58;GPV=1;SPV=0.00010916;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,9:13,6 +chr5 27713449 . TAA T 0 PASS DP=32;GPV=1;SPV=0.2488;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:4,1:8,3 +chr5 28560321 . CT C 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:0,4:3,6 +chr5 28701678 . A G 0 PASS DP=54;GPV=1;SPV=0.03791;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1 +chr5 29044401 . A AT 0 PASS DP=54;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,16:6,9:15,7 +chr5 29489288 . C A 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,5:4,6 +chr5 29745481 . AAAT A 0 PASS DP=52;GPV=1;SPV=0.0092175;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7 +chr5 30112951 . A C 0 PASS DP=56;GPV=1;SPV=0.0019214;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,8:9,3 +chr5 30489200 . G A 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,6:12,3 +chr5 30818058 . T C 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:3,1:14,9 +chr5 31326677 . TA T 0 PASS DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,4:4,2 +chr5 31724557 . G A 0 PASS DP=52;GPV=1;SPV=0.0016144;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:7,13:8,3 +chr5 31817965 . A ATT 0 PASS DP=45;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,14:5,5:3,9 +chr5 32086843 . A AT 0 PASS DP=45;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,12:5,8:5,4 +chr5 32781090 . T G 0 PASS DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,8:13,2 +chr5 32973804 . T TAA 0 PASS DP=62;GPV=1;SPV=0.010427;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,4:18,6 +chr5 33158130 . G GA 0 PASS DP=33;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,8:6,7:2,1 +chr5 33644536 . T C 0 PASS DP=67;GPV=1;SPV=0.088082;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:20,4:17,1 +chr5 34208425 . C T 0 PASS DP=63;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:15,3:19,1 +chr5 35321597 . C A 0 PASS DP=41;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,4:8,3:8,1 +chr5 35793759 . C CACACACACACACAT 0 PASS DP=39;GPV=1;SPV=0.096154;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,7:2,2:2,5 +chr5 36386679 . C CT 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:5,8:3,3 +chr5 36952018 . C CTGTGTG 0 PASS DP=32;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,6:3,2 +chr5 39176137 . GTTT G 0 PASS DP=22;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1 +chr5 39967683 . G A 0 PASS DP=41;GPV=1;SPV=0.039195;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:11,4:6,8 +chr5 40876480 . G T 0 PASS DP=57;GPV=1;SPV=0.00010641;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,6:9,8 +chr5 41999490 . TATAC T 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3 +chr5 41999496 . T C 0 PASS DP=40;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3 +chr5 44569420 . G C 0 PASS DP=57;GPV=1;SPV=0.04473;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,2:12,4 +chr5 45246386 . T C 0 PASS DP=61;GPV=1;SPV=1.3467e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:6,8:13,10 +chr5 46570859 . C T 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,2:4,5 +chr5 46583919 . G C 0 PASS DP=30;GPV=1;SPV=0.03285;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,2:5,4 +chr5 46592559 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr5 46648171 . C T 0 PASS DP=92;GPV=1;SPV=0.030179;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:33,4:17,3 +chr5 46651839 . C T 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr5 46663721 . G C 0 PASS DP=58;GPV=1;SPV=0.21008;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:15,1:23,4 +chr5 46664833 . A C 0 PASS DP=42;GPV=1;SPV=0.062457;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,1:11,4 +chr5 46666288 . G T 0 PASS DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:13,2:22,2 +chr5 46680089 . CT C 0 PASS DP=103;GPV=1;SPV=0.035014;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:31,2:23,4 +chr5 46817927 . G C 0 PASS DP=38;GPV=1;SPV=0.028335;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,5:1,2 +chr5 46872417 . T C 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:0,0:33,4 +chr5 46942783 . T C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4 +chr5 47066201 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr5 47074114 . A C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 47134703 . G A 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,2:16,3 +chr5 47144442 . G T 0 PASS DP=55;GPV=1;SPV=0.014008;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:1,1:27,10 +chr5 47204182 . GA G 0 PASS DP=77;GPV=1;SPV=0.010244;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:15,6:22,2 +chr5 50109937 . G A 0 PASS DP=52;GPV=1;SPV=0.043846;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:16,3:0,0 +chr5 51215492 . T G 0 PASS DP=64;GPV=1;SPV=0.13695;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,5:22,1:16,4 +chr5 52108360 . C CTT 0 PASS DP=44;GPV=1;SPV=0.1043;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:12,2:13,4 +chr5 52369650 . C CA 0 PASS DP=35;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:4,7:8,2 +chr5 52655948 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr5 53005580 . C CAAA 0 PASS DP=47;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,8:4,6:2,2 +chr5 53391053 . G GACACACACACACACAC 0 PASS DP=33;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:5,6:1,1 +chr5 54992552 . AGAT A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:16,1:19,3 +chr5 55185971 . CTTT C 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,10:4,7:3,3 +chr5 56844183 . G GTT 0 PASS DP=31;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1 +chr5 57219375 . CAAA C 0 PASS DP=25;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1 +chr5 57444336 . C A 0 PASS DP=71;GPV=1;SPV=0.00010649;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:16,9:12,8 +chr5 58544507 . C T 0 PASS DP=60;GPV=1;SPV=0.01487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,6:16,4 +chr5 60725790 . T G 0 PASS DP=42;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,4:4,3:4,1 +chr5 61431372 . CA C 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr5 61440360 . T TA 0 PASS DP=55;GPV=1;SPV=0.0017321;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,7:10,9 +chr5 62905829 . T A 0 PASS DP=69;GPV=1;SPV=0.0073148;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:21,3:14,8 +chr5 63704518 . A G 0 PASS DP=63;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:1,3:1,1:0,2 +chr5 63823485 . A AACACACACACACACACAC 0 PASS DP=31;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:3,5:1,4 +chr5 63867942 . AT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1 +chr5 64669872 . ATGAT A 0 PASS DP=36;GPV=1;SPV=0.40966;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:11,2:13,1 +chr5 67274485 . ATT A 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr5 67948449 . C CT 0 PASS DP=42;GPV=1;SPV=0.0017788;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:7,8:4,3 +chr5 69252494 . CT C 0 PASS DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,5:3,1 +chr5 69333563 . C A 0 PASS DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:18,3:18,1 +chr5 70684573 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr5 70783879 . G A 0 PASS DP=89;GPV=1;SPV=0.0026259;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:29,12:0,4 +chr5 71312022 . A C 0 PASS DP=36;GPV=1;SPV=0.15197;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,2:7,4 +chr5 71330970 . T C 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,2:1,2 +chr5 72683085 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr5 73494369 . CTT C 0 PASS DP=45;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:6,9:1,5 +chr5 74111003 . C A 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,2:8,3 +chr5 74187781 . C A 0 PASS DP=62;GPV=1;SPV=0.0017074;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:19,7:6,3 +chr5 74697727 . C CA 0 PASS DP=45;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:14,6:3,2 +chr5 74771853 . CA C 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:9,2:19,2 +chr5 75140281 . GAAAGAAAGGAAGGA G 0 PASS DP=50;GPV=1;SPV=0.030049;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,6:6,2 +chr5 75247240 . CTTT C 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2 +chr5 75503842 . T A 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5 +chr5 76237993 . T C 0 PASS DP=35;GPV=1;SPV=0.019118;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr5 76496729 . C T 0 PASS DP=49;GPV=1;SPV=0.0054457;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:5,2:13,12 +chr5 77367532 . T C 0 PASS DP=39;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,4:0,2:1,2 +chr5 77777236 . TTTC T 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1 +chr5 77794934 . A G 0 PASS DP=25;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,4:1,1:1,3 +chr5 78436980 . G C 0 PASS DP=65;GPV=1;SPV=0.00017157;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:10,6:8,11 +chr5 78673176 . G GGTGT 0 PASS DP=40;GPV=1;SPV=0.0033075;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,5:7,3 +chr5 79427731 . C T 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1 +chr5 79823556 . A G 0 PASS DP=58;GPV=1;SPV=0.011954;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,8:10,2:6,6 +chr5 80303728 . C CAAAAA 0 PASS DP=48;GPV=1;SPV=0.012176;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4 +chr5 80646105 . G GTTTTT 0 PASS DP=50;GPV=1;SPV=0.02099;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:16,6:5,5 +chr5 80729857 . A C 0 PASS DP=72;GPV=1;SPV=0.00013115;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,9:11,6 +chr5 80887094 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3 +chr5 80897781 . G A 0 PASS DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,4:4,5 +chr5 82725386 . C A 0 PASS DP=52;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,4:7,3:10,1 +chr5 83202042 . C CAA 0 PASS DP=32;GPV=1;SPV=0.025565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr5 84232428 . T C 0 PASS DP=69;GPV=1;SPV=0.0042803;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,6:9,2 +chr5 84369243 . CAT C 0 PASS DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1 +chr5 84564119 . T A 0 PASS DP=61;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:3,4:2,2:1,2 +chr5 85217095 . GA G 0 PASS DP=41;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1 +chr5 86291908 . G A 0 PASS DP=47;GPV=1;SPV=0.025884;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:14,8:6,5 +chr5 87001902 . AAGAAAG A 0 PASS DP=51;GPV=1;SPV=0.0041553;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,16:2,9:2,7 +chr5 87989280 . C CAAAAAAAA 0 PASS DP=48;GPV=1;SPV=0.071698;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:11,4:12,1 +chr5 88676321 . TTCCTCCTCCTCCTCC T 0 PASS DP=33;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:2,1:8,3 +chr5 88869312 . TATAC T 0 PASS DP=23;GPV=1;SPV=0.004995;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,4:0,0:0,4 +chr5 89504536 . G A 0 PASS DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr5 91175363 . T G 0 PASS DP=69;GPV=1;SPV=0.0058487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,2:17,6 +chr5 91338508 . T A 0 PASS DP=49;GPV=1;SPV=5.7647e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:6,5:3,6 +chr5 92113927 . GTA G 0 PASS DP=19;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:3,4:0,1 +chr5 92346468 . A ATG 0 PASS DP=22;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3 +chr5 95805833 . C CTT 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3 +chr5 96752539 . AAACCTCAGGGAT A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2 +chr5 97152970 . T A 0 PASS DP=57;GPV=1;SPV=0.053676;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:18,3:12,3 +chr5 98096721 . C T 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,3:11,2 +chr5 99469264 . A G 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:15,6:5,4 +chr5 99861268 . C A 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,3:8,1 +chr5 100470648 . C CTAT 0 PASS DP=47;GPV=1;SPV=0.00026093;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,13:2,11:3,2 +chr5 100493009 . ATATATATTTATGTAAATATATATT A 0 PASS DP=43;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:7,1:8,3 +chr5 100675570 . TGTGTGTGTGTGTGCGC T 0 PASS DP=67;GPV=1;SPV=0.031273;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:22,8:7,4 +chr5 100785138 . T TCTTC 0 PASS DP=36;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:4,3:7,5 +chr5 100852114 . CT C 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,2:5,3 +chr5 100875562 . C G 0 PASS DP=70;GPV=1;SPV=0.00077059;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:21,6:9,7 +chr5 101471849 . C T 0 PASS DP=88;GPV=1;SPV=7.0935e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:20,7:15,8 +chr5 101726075 . C CAATAATAAT 0 PASS DP=49;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:9,6:6,2 +chr5 102050808 . C A 0 PASS DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,3:4,4 +chr5 102207704 . C CAA 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,5:6,4 +chr5 102931869 . C T 0 PASS DP=53;GPV=1;SPV=0.0067248;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,3:14,7 +chr5 103997929 . C T 0 PASS DP=65;GPV=1;SPV=0.026779;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,3:21,4 +chr5 104725776 . C A 0 PASS DP=65;GPV=1;SPV=9.2183e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,8:11,7 +chr5 106207402 . T A 0 PASS DP=68;GPV=1;SPV=0.0019104;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:10,4:17,5 +chr5 106249012 . T TGCTTCCTACCA 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,6:7,4 +chr5 107131111 . A T 0 PASS DP=59;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:9,2:8,2 +chr5 108343911 . C A 0 PASS DP=60;GPV=1;SPV=0.00037649;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,7:10,4 +chr5 110191516 . CT C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,2:1,2 +chr5 110470635 . G T 0 PASS DP=78;GPV=1;SPV=0.0060413;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:22,3:15,6 +chr5 111576719 . T C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,1:3,3 +chr5 114339631 . C G 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,4:10,4 +chr5 114690125 . T A 0 PASS DP=72;GPV=1;SPV=2.0437e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7 +chr5 115361420 . CTTTGCA C 0 PASS DP=69;GPV=1;SPV=0.001258;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,2:8,6 +chr5 117189659 . T TAAA 0 PASS DP=58;GPV=1;SPV=0.0059628;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:6,6:12,5 +chr5 118178397 . A ATTT 0 PASS DP=26;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:5,8:1,1 +chr5 119732025 . G GACACAC 0 PASS DP=41;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,8:5,2:2,6 +chr5 120184382 . C CA 0 PASS DP=39;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:7,7:7,2 +chr5 121632513 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,5:3,1 +chr5 121663508 . G A 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:15,6:13,5 +chr5 121705429 . AGG A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,2:3,2 +chr5 122598863 . A C 0 PASS DP=60;GPV=1;SPV=1.458e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,8:6,7 +chr5 123089192 . T A 0 PASS DP=24;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,2:4,2 +chr5 123237435 . T A 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chr5 123237436 . C T 0 PASS DP=38;GPV=1;SPV=0.23776;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chr5 123743329 . G A 0 PASS DP=45;GPV=1;SPV=0.013751;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,7:9,4 +chr5 123935002 . A G 0 PASS DP=48;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,3:12,7 +chr5 124094349 . CATATATATATATATATATAT C 0 PASS DP=19;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,2:2,2 +chr5 124662790 . T C 0 PASS DP=69;GPV=1;SPV=0.0024929;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:17,6:13,4 +chr5 124762700 . C CT 0 PASS DP=35;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,7:3,1 +chr5 125196155 . C G 0 PASS DP=48;GPV=1;SPV=0.048897;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:12,3:7,4 +chr5 126164850 . GATAT G 0 PASS DP=40;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,8:1,5:2,3 +chr5 126270760 . CAAT C 0 PASS DP=77;GPV=1;SPV=0.038208;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,8:17,4:17,4 +chr5 126543964 . C CT 0 PASS DP=52;GPV=1;SPV=0.0033619;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:7,6:12,3 +chr5 127828763 . C T 0 PASS DP=54;GPV=1;SPV=0.00015222;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:15,22:6,11:9,11 +chr5 128000737 . C CTT 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr5 128897457 . GATTAGAACGCTCA G 0 PASS DP=49;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:11,8:3,6 +chr5 129891250 . A C 0 PASS DP=64;GPV=1;SPV=0.00010804;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,7:12,5 +chr5 130113113 . T A 0 PASS DP=67;GPV=1;SPV=0.0076861;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:12,9:15,10 +chr5 130258668 . T TA 0 PASS DP=58;GPV=1;SPV=0.042491;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,7:8,6:11,1 +chr5 130772958 . AAAT A 0 PASS DP=36;GPV=1;SPV=0.17449;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,1:10,4 +chr5 130772965 . GGA G 0 PASS DP=29;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,2:5,3 +chr5 130942245 . G T 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,1:15,3 +chr5 131054508 . CAAAAAAAAAAA C 0 PASS DP=40;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,4:4,3 +chr5 131073212 . G C 0 PASS DP=49;GPV=1;SPV=0.042462;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,1:16,5 +chr5 131292921 . A AC 0 PASS DP=33;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:2,6:5,4 +chr5 131521840 . TACACACACACACACACACAC T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,4:2,5 +chr5 132351276 . C A 0 PASS DP=58;GPV=1;SPV=0.00037187;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:7,3:13,8 +chr5 132473012 . T TA 0 PASS DP=26;GPV=1;SPV=0.0054137;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,10:1,9:0,1 +chr5 132611705 . TA T 0 PASS DP=37;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:7,7:5,5 +chr5 132673903 . G T 0 PASS DP=66;GPV=1;SPV=0.00030577;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,4:12,6 +chr5 133625829 . T A 0 PASS DP=42;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:12,3:8,1 +chr5 134518582 . T TA 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,4:5,3 +chr5 134692057 . C CT 0 PASS DP=36;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:5,7:3,3 +chr5 134906194 . A ATTT 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr5 138120230 . C CTT 0 PASS DP=32;GPV=1;SPV=0.03835;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr5 138650421 . GA G 0 PASS DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,7:2,2 +chr5 139233816 . CA C 0 PASS DP=27;GPV=1;SPV=0.040959;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,9:1,8:0,1 +chr5 139560199 . AT A 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,6:7,2 +chr5 139701878 . G T 0 PASS DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:15,3:11,4 +chr5 140178441 . CTT C 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3 +chr5 140584909 . A AT 0 PASS DP=35;GPV=1;SPV=0.011765;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,7:6,4 +chr5 140838081 . T A 0 PASS DP=48;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,2:4,1:3,1 +chr5 141462116 . C G 0 PASS DP=76;GPV=1;SPV=5.9715e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:18,6:7,6 +chr5 141712256 . G GT 0 PASS DP=51;GPV=1;SPV=0.011195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,6:11,3 +chr5 141840617 . G A 0 PASS DP=58;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,8:4,1:9,7 +chr5 142188567 . AGGAAG A 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,3:4,2 +chr5 142439845 . C T 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:11,6:16,10 +chr5 143945762 . T C 0 PASS DP=69;GPV=1;SPV=3.9123e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:5,6:12,11 +chr5 144847159 . T TTTTATTTA 0 PASS DP=49;GPV=1;SPV=0.053256;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,10:7,4:20,6 +chr5 145340776 . T C 0 PASS DP=40;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,2:3,1:2,1 +chr5 146372283 . A T 0 PASS DP=53;GPV=1;SPV=0.095044;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:19,3:8,2 +chr5 147086428 . C CT 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr5 147214520 . GTCTTTCTTTCTTTCTTTCTT G 0 PASS DP=50;GPV=1;SPV=0.10147;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,7:11,5:11,2 +chr5 147840621 . A C 0 PASS DP=31;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,6:4,1:4,5 +chr5 147873470 . GGAAATAAGGGATTGGGGCACA G 0 PASS DP=64;GPV=1;SPV=0.00060477;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:11,11:9,7 +chr5 148778095 . T TTCTCTC 0 PASS DP=40;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,6:9,3 +chr5 149127910 . C G 0 PASS DP=69;GPV=1;SPV=0.0012545;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:9,4:21,8 +chr5 149939140 . C G 0 PASS DP=61;GPV=1;SPV=0.00010305;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:7,7:14,7 +chr5 151282890 . T C 0 PASS DP=71;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,4:12,1:17,3 +chr5 152415757 . C T 0 PASS DP=48;GPV=1;SPV=0.0002749;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:5,5:11,10 +chr5 153607068 . T TATATATATATATAA 0 PASS DP=42;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:9,4:3,3 +chr5 153826411 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:9,2:7,2 +chr5 153854713 . T C 0 PASS DP=56;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,4:10,3:9,1 +chr5 154138321 . CA C 0 PASS DP=37;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,7:6,1 +chr5 154149107 . G A 0 PASS DP=39;GPV=1;SPV=0.0061538;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,4:3,3:2,1 +chr5 154452729 . T G 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:13,2:17,3 +chr5 154452743 . A AGTTCTTCCCACT 0 PASS DP=58;GPV=1;SPV=0.018288;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:12,3:12,3 +chr5 155062654 . CT C 0 PASS DP=22;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,4:2,1 +chr5 156841324 . A C 0 PASS DP=62;GPV=1;SPV=0.016974;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,4:14,3 +chr5 156841325 . A C 0 PASS DP=60;GPV=1;SPV=0.0091986;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,5:12,3 +chr5 156841326 . A G 0 PASS DP=53;GPV=1;SPV=0.0089005;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,5:14,3 +chr5 156841327 . C CCT 0 PASS DP=62;GPV=1;SPV=0.020934;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,4:15,3 +chr5 157054190 . C CA 0 PASS DP=38;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,5:4,2 +chr5 157526173 . T C 0 PASS DP=65;GPV=1;SPV=0.069705;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:28,3:6,2 +chr5 157677668 . AAG A 0 PASS DP=47;GPV=1;SPV=0.0038641;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:3,5:10,7 +chr5 158866861 . A G 0 PASS DP=19;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,2:1,1:0,1 +chr5 159466785 . TACTGCTTATATATATATAA T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1 +chr5 160486276 . CTTTAGA C 0 PASS DP=37;GPV=1;SPV=0.0056305;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8 +chr5 160693403 . A AAC 0 PASS DP=56;GPV=1;SPV=0.02692;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,12:15,5:6,7 +chr5 160898706 . T G 0 PASS DP=66;GPV=1;SPV=0.00056465;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:17,5:11,10 +chr5 161033663 . C T 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,3:0,1 +chr5 161463551 . T A 0 PASS DP=20;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chr5 162065825 . T TACACACACAC 0 PASS DP=44;GPV=1;SPV=0.017445;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:5,5:5,1 +chr5 163244240 . G A 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,5:5,3 +chr5 163405314 . C CT 0 PASS DP=43;GPV=1;SPV=0.0018699;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:3,9:7,3 +chr5 163617971 . CTT C 0 PASS DP=35;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:3,1:9,7 +chr5 164970464 . G T 0 PASS DP=71;GPV=1;SPV=4.0661e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:11,6:15,11 +chr5 165094976 . A T 0 PASS DP=56;GPV=1;SPV=0.051138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,5:7,2:11,3 +chr5 165315188 . A G 0 PASS DP=66;GPV=1;SPV=2.2597e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:17,11:6,11 +chr5 165653669 . T A 0 PASS DP=36;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,5:4,3 +chr5 165919434 . C T 0 PASS DP=70;GPV=1;SPV=1.2609e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,7:13,12 +chr5 166057391 . C CAAAAAAAAA 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:3,4:5,1 +chr5 166683568 . ATAT A 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,3:9,2 +chr5 166688864 . CATAT C 0 PASS DP=32;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:5,5:1,1 +chr5 167834640 . CT C 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,5:3,1 +chr5 168036644 . ATAT A 0 PASS DP=63;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:9,4:5,2:4,2 +chr5 168165640 . CCCCCCCAA C 0 PASS DP=32;GPV=1;SPV=0.013986;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,3:0,0:0,3 +chr5 168250104 . GTGGATGGATGGATGGA G 0 PASS DP=56;GPV=1;SPV=0.0014108;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,11:10,6:4,5 +chr5 169202241 . T TAAATA 0 PASS DP=58;GPV=1;SPV=0.025432;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,12:10,6:15,6 +chr5 169635867 . ATGTATG A 0 PASS DP=63;GPV=1;SPV=0.15343;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1 +chr5 169972586 . T TA 0 PASS DP=46;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,5:5,2:11,3 +chr5 170589783 . A G 0 PASS DP=49;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1 +chr5 170599624 . GATGGACCTAGGGGTGGGGAAGAGCGAGAAGTTCCCGTGCA G 0 PASS DP=48;GPV=1;SPV=0.011304;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,4:7,4 +chr5 171502913 . AGT A 0 PASS DP=38;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,3:8,6 +chr5 171878593 . A T 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,2:8,2 +chr5 173699024 . T C 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2 +chr5 173937019 . CTT C 0 PASS DP=37;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,4:6,4 +chr5 174883446 . C T 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,4:12,4 +chr5 175914839 . C G 0 PASS DP=79;GPV=1;SPV=0.011639;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:19,5:13,7 +chr5 175941300 . T C 0 PASS DP=76;GPV=1;SPV=0.037221;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:14,3:20,8 +chr5 176055594 . T C 0 PASS DP=93;GPV=1;SPV=0.014566;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:24,4:21,7 +chr5 176489248 . T C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:5,6:5,6 +chr5 176591961 . G A 0 PASS DP=33;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,3:5,5 +chr5 177695953 . TGGC T 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,2:11,3 +chr5 177891695 . A G 0 PASS DP=95;GPV=1;SPV=0.041141;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,4:19,5 +chr5 178034774 . A G 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:15,3:7,2 +chr5 178039933 . A G 0 PASS DP=64;GPV=1;SPV=0.046272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,5:13,4 +chr5 178195604 . C CA 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr5 178358268 . GTA G 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,3:7,4 +chr5 180194002 . G GTGTTTGTT 0 PASS DP=57;GPV=1;SPV=2.2901e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:5,19:3,9:2,10 +chr5 180945995 . A T 0 PASS DP=49;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,2:2,1:1,1 +chr5 181269984 . A G 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3 +chr5 181475428 . G T 0 PASS DP=106;GPV=1;SPV=0.016736;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:57,8:21,5:36,3 +chr6 469644 . GTCTCCCTCC G 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,2:2,1 +chr6 1037543 . ATGTT A 0 PASS DP=53;GPV=1;SPV=0.0001145;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:5,9:7,9 +chr6 2357977 . C CTT 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr6 4103893 . CT C 0 PASS DP=36;GPV=1;SPV=0.00052709;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,6:4,4 +chr6 4923902 . A C 0 PASS DP=28;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,0:0,2 +chr6 5539382 . G T 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,3:4,4 +chr6 5555755 . C G 0 PASS DP=61;GPV=1;SPV=3.6248e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,4:6,6 +chr6 6590118 . TAA T 0 PASS DP=32;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,5:3,1 +chr6 7349944 . AAAAGAAAG A 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,3:6,7 +chr6 7469157 . C CT 0 PASS DP=22;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,5:5,1 +chr6 7704987 . C CT 0 PASS DP=28;GPV=1;SPV=0.00035596;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:4,9:1,1 +chr6 7958136 . C CTTT 0 PASS DP=18;GPV=1;SPV=0.15909;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:2,2:2,1 +chr6 9010172 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:3,4:4,4 +chr6 10035301 . ATATATG A 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr6 10087104 . C CA 0 PASS DP=40;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,6:4,4:3,2 +chr6 10765440 . ATTTT A 0 PASS DP=27;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1 +chr6 11935537 . C T 0 PASS DP=51;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:6,3:11,2 +chr6 13025671 . T TTGTG 0 PASS DP=45;GPV=1;SPV=0.0017126;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:6,10:7,3 +chr6 13762086 . C CTT 0 PASS DP=26;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,2:3,2 +chr6 13793125 . C CA 0 PASS DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,6:0,5:1,1 +chr6 13813884 . ATGCCGG A 0 PASS DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,8:11,7 +chr6 13813894 . C A 0 PASS DP=73;GPV=1;SPV=7.1318e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:10,8:8,7 +chr6 13821384 . C A 0 PASS DP=70;GPV=1;SPV=7.525e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:11,5:5,9 +chr6 14147038 . A G 0 PASS DP=47;GPV=1;SPV=0.008413;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,7:0,5:4,2 +chr6 15064967 . C CAAAAAA 0 PASS DP=30;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:2,4:3,1 +chr6 15120858 . A C 0 PASS DP=50;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:0,0:3,2 +chr6 15254897 . C T 0 PASS DP=54;GPV=1;SPV=3.2171e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:6,5:7,11 +chr6 16480154 . C CAA 0 PASS DP=24;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:1,4:1,1 +chr6 16920634 . AACACACACACAC A 0 PASS DP=27;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:5,1:0,6 +chr6 17083187 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.001857;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,2:3,6 +chr6 17474185 . CTT C 0 PASS DP=21;GPV=1;SPV=0.0039295;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,6:2,2 +chr6 17587037 . T TAC 0 PASS DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,7:8,2 +chr6 17781623 . G GTT 0 PASS DP=33;GPV=1;SPV=0.0061587;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,4:4,3 +chr6 17934787 . CA C 0 PASS DP=45;GPV=1;SPV=0.040919;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7 +chr6 19972904 . CTT C 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr6 20437918 . G C 0 PASS DP=56;GPV=1;SPV=8.868e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,6:3,2 +chr6 20797760 . C CTTTATTTTAT 0 PASS DP=43;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,5:3,1 +chr6 20988182 . A ATGTGTGTG 0 PASS DP=22;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,4:3,2 +chr6 22379075 . A C 0 PASS DP=63;GPV=1;SPV=0.039588;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,4:13,1 +chr6 22481638 . A G 0 PASS DP=33;GPV=1;SPV=0.047386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:3,10:2,7:1,3 +chr6 22885876 . A AGTGT 0 PASS DP=31;GPV=1;SPV=0.0031609;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:3,4:5,3 +chr6 23797596 . A T 0 PASS DP=36;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1 +chr6 23797597 . A T 0 PASS DP=37;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1 +chr6 24056447 . T TAAGAAAGAAAGA 0 PASS DP=49;GPV=1;SPV=0.041104;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,10:10,7:14,3 +chr6 24442449 . T G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr6 24474946 . C CA 0 PASS DP=35;GPV=1;SPV=0.0019638;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,12:3,6:4,6 +chr6 25022532 . ATTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,4:3,4 +chr6 26436177 . CT C 0 PASS DP=51;GPV=1;SPV=0.015259;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:18,10:7,2 +chr6 27101011 . C G 0 PASS DP=54;GPV=1;SPV=0.047135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:20,4:9,3 +chr6 27101021 . A AC 0 PASS DP=45;GPV=1;SPV=0.21118;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,2:8,2 +chr6 27101029 . G GAT 0 PASS DP=47;GPV=1;SPV=0.048435;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,7:16,4:6,3 +chr6 27561940 . T TTTTG 0 PASS DP=45;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:7,1:11,3 +chr6 27733493 . G GTTTT 0 PASS DP=43;GPV=1;SPV=0.017964;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:9,6:6,4 +chr6 28176823 . T TA 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2 +chr6 28594345 . C G 0 PASS DP=80;GPV=1;SPV=0.0011729;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,8:18,6 +chr6 28872465 . T A 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,4:5,3 +chr6 28953876 . C T 0 PASS DP=70;GPV=1;SPV=0.039879;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:21,5:21,5 +chr6 29444735 . A T 0 PASS DP=84;GPV=1;SPV=0.00097272;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:42,18:24,9:18,9 +chr6 30082997 . T C 0 PASS DP=45;GPV=1;SPV=0.029887;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,4:9,8 +chr6 30333357 . T G 0 PASS DP=42;GPV=1;SPV=0.043889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,4:11,2 +chr6 30928031 . GTT G 0 PASS DP=39;GPV=1;SPV=0.12367;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:18,4:4,3 +chr6 31807582 . C CAA 0 PASS DP=52;GPV=1;SPV=0.0066159;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:12,8:1,1 +chr6 32135286 . T TAAAAA 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr6 32242474 . C T 0 PASS DP=47;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:7,3:12,2 +chr6 32242510 . T TTTCC 0 PASS DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:7,5:6,4 +chr6 32632476 . G T 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,6:10,2 +chr6 32746007 . C A 0 PASS DP=79;GPV=1;SPV=0.082592;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:17,1:30,5 +chr6 32746050 . C T 0 PASS DP=78;GPV=1;SPV=0.10036;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:23,1:22,4 +chr6 33553143 . C CAAAAA 0 PASS DP=34;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:5,7:3,1 +chr6 33767012 . A ACACACACG 0 PASS DP=57;GPV=1;SPV=0.090199;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,8:14,4:13,4 +chr6 33847578 . A G 0 PASS DP=80;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:14,5:8,2:6,3 +chr6 33978334 . C T 0 PASS DP=89;GPV=1;SPV=5.8714e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:15,8:21,8 +chr6 33989506 . T TTCTCTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.0077942;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:11,5:8,4 +chr6 34272585 . G A 0 PASS DP=83;GPV=1;SPV=2.4738e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:33,20:15,9:18,11 +chr6 34428164 . C CAAAAAAAAAAAAA 0 PASS DP=41;GPV=1;SPV=0.29987;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:14,3:12,1 +chr6 35266836 . C CT 0 PASS DP=37;GPV=1;SPV=0.020315;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:5,4:8,9 +chr6 35415778 . C CTGTGTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:19,3:7,2 +chr6 35483711 . G A 0 PASS DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,3:18,1 +chr6 36282044 . G A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr6 36504898 . CA C 0 PASS DP=29;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,5:2,4 +chr6 36802217 . CAA C 0 PASS DP=40;GPV=1;SPV=0.031109;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1 +chr6 36943963 . G A 0 PASS DP=52;GPV=1;SPV=0.35509;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,4:17,1:11,3 +chr6 37181183 . A T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1 +chr6 38230495 . CAAAAA C 0 PASS DP=25;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,4:6,1 +chr6 39149355 . TCACACACA T 0 PASS DP=26;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,2:6,2 +chr6 39806855 . AG A 0 PASS DP=63;GPV=1;SPV=0.002106;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:13,13:11,11 +chr6 40050106 . C T 0 PASS DP=78;GPV=1;SPV=0.0091964;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:21,4:18,5 +chr6 40636965 . A ATG 0 PASS DP=44;GPV=1;SPV=0.06862;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,3:11,4 +chr6 40636985 . ATG A 0 PASS DP=39;GPV=1;SPV=0.22567;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,1:11,5 +chr6 40636990 . A AACATATATTT 0 PASS DP=45;GPV=1;SPV=0.37843;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,4:14,1:9,3 +chr6 40674550 . T C 0 PASS DP=67;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,7:6,4:8,3 +chr6 41663309 . T TTGTG 0 PASS DP=46;GPV=1;SPV=0.028335;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,7:3,2:7,5 +chr6 42206237 . AAG A 0 PASS DP=61;GPV=1;SPV=0.03734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:11,7:24,6 +chr6 42290741 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:4,4:5,9 +chr6 42507575 . A ATTTTTTTTT 0 PASS DP=43;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3 +chr6 43294350 . T TCAC 0 PASS DP=34;GPV=1;SPV=0.25735;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:8,2:11,1 +chr6 43372091 . T G 0 PASS DP=41;GPV=1;SPV=0.017734;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,10:9,6:4,4 +chr6 43567150 . G C 0 PASS DP=85;GPV=1;SPV=0.00046557;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:23,8:15,6 +chr6 43738634 . G GT 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,1:4,3 +chr6 43935395 . T C 0 PASS DP=80;GPV=1;SPV=0.042003;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:26,6:21,2 +chr6 44391089 . C CAT 0 PASS DP=54;GPV=1;SPV=0.031062;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:10,2:12,3 +chr6 44606417 . C A 0 PASS DP=69;GPV=1;SPV=0.00091899;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:15,3:13,8 +chr6 44871588 . C T 0 PASS DP=51;GPV=1;SPV=0.15731;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:14,1:11,2 +chr6 45866420 . T C 0 PASS DP=48;GPV=1;SPV=0.22017;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,1:15,4 +chr6 46127836 . A T 0 PASS DP=68;GPV=1;SPV=2.5202e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:7,12:11,11 +chr6 46142392 . A T 0 PASS DP=48;GPV=1;SPV=0.0045935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,2:10,8 +chr6 46831841 . C A 0 PASS DP=65;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:18,6:17,8 +chr6 47287307 . CAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,6:3,2 +chr6 48147451 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.014654;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,15:12,14:2,1 +chr6 48447033 . TA T 0 PASS DP=52;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,4:11,5 +chr6 48993875 . G GATATATATAT 0 PASS DP=36;GPV=1;SPV=0.34759;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2 +chr6 49226502 . A AT 0 PASS DP=45;GPV=1;SPV=0.025631;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,8:4,5 +chr6 49394006 . T A 0 PASS DP=77;GPV=1;SPV=0.0007826;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,7:19,5 +chr6 49394007 . C A 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:13,7:18,5 +chr6 49394008 . C A 0 PASS DP=72;GPV=1;SPV=0.0009984;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,7:17,5 +chr6 51507491 . AT A 0 PASS DP=52;GPV=1;SPV=0.035177;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,8:13,4 +chr6 51702201 . C T 0 PASS DP=48;GPV=1;SPV=0.18959;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:11,2:19,3 +chr6 51807459 . ATAT A 0 PASS DP=39;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:7,3:3,1 +chr6 52682596 . G T 0 PASS DP=64;GPV=1;SPV=0.03619;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:19,5:15,2 +chr6 53104723 . G GTT 0 PASS DP=37;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,13:6,11:2,2 +chr6 53409065 . C CTTTTT 0 PASS DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:4,4:5,1 +chr6 53454593 . T TCACACACACACACACACACACA 0 PASS DP=38;GPV=1;SPV=0.004119;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,11:5,8:2,3 +chr6 54200624 . T G 0 PASS DP=62;GPV=1;SPV=0.058259;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:15,2:16,3 +chr6 54219369 . AC A 0 PASS DP=44;GPV=1;SPV=0.23178;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr6 54616580 . T G 0 PASS DP=78;GPV=1;SPV=0.047777;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:19,4:23,2 +chr6 55539859 . GAAGAAAGAAAGA G 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4 +chr6 56053862 . A AGT 0 PASS DP=40;GPV=1;SPV=0.024928;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,9:9,5:6,4 +chr6 56219216 . C CAA 0 PASS DP=39;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:14,4:5,1 +chr6 56917018 . G A 0 PASS DP=21;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,4:0,2:0,2 +chr6 57866875 . C T 0 PASS DP=70;GPV=1;SPV=0.036016;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,1:17,4 +chr6 58040371 . A G 0 PASS DP=65;GPV=1;SPV=0.00086667;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:16,5:12,9 +chr6 58452068 . A T 0 PASS DP=50;GPV=1;SPV=7.269e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:8,11:2,7 +chr6 58724009 . C A 0 PASS DP=124;GPV=1;SPV=0.00087043;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:49,23:35,18:14,5 +chr6 59314063 . G T 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr6 59343156 . T A 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2 +chr6 60230066 . G A 0 PASS DP=31;GPV=1;SPV=0.025986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:10,9:0,1 +chr6 60511738 . CT C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,6:5,4 +chr6 61540793 . GTATATATATATATATATATATATATA G 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:3,11:2,4:1,7 +chr6 62863532 . TCC T 0 PASS DP=31;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,3:5,8 +chr6 63297354 . C CA 0 PASS DP=30;GPV=1;SPV=0.16835;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:10,5:4,1 +chr6 63654889 . C CTT 0 PASS DP=32;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3 +chr6 64045383 . G GTTTATTTTAT 0 PASS DP=61;GPV=1;SPV=0.04561;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3 +chr6 64107843 . C A 0 PASS DP=65;GPV=1;SPV=6.2242e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:14,7:8,7 +chr6 64542322 . C A 0 PASS DP=63;GPV=1;SPV=0.00067755;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:11,5:13,6 +chr6 64585065 . A T 0 PASS DP=70;GPV=1;SPV=7.8434e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,9:10,3 +chr6 65306938 . A G 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2 +chr6 69031079 . CTCT C 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,2:8,2 +chr6 69691147 . C CTT 0 PASS DP=53;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:10,6:7,1 +chr6 70526750 . T C 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chr6 72102499 . AC A 0 PASS DP=64;GPV=1;SPV=0.0039481;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3 +chr6 72449805 . AT A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2 +chr6 72873552 . C T 0 PASS DP=74;GPV=1;SPV=0.0018434;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:18,10:17,3 +chr6 76401975 . GT G 0 PASS DP=35;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:7,5:7,2 +chr6 76401982 . T G 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,5:10,1 +chr6 76401989 . T G 0 PASS DP=33;GPV=1;SPV=0.1599;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,5:11,1 +chr6 77029361 . GCTTCATCCATGTCCCTGCAAAGGACATGAACT G 0 PASS DP=50;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,6:9,2 +chr6 79860854 . C A 0 PASS DP=59;GPV=1;SPV=0.2008;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,1:17,3 +chr6 81468123 . A AAT 0 PASS DP=47;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:7,1:9,5 +chr6 81665420 . C A 0 PASS DP=45;GPV=1;SPV=0.0062786;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,9:10,1 +chr6 82659690 . C G 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:16,8:10,6 +chr6 83277901 . A AAATAATAATAATAATAATAAT 0 PASS DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:1,1:7,3 +chr6 84274350 . T C 0 PASS DP=58;GPV=1;SPV=0.0033254;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:10,2:8,4 +chr6 84310784 . C CA 0 PASS DP=33;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:6,5:7,1 +chr6 84989434 . T C 0 PASS DP=43;GPV=1;SPV=0.18637;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:11,2:11,1 +chr6 87851701 . AG A 0 PASS DP=76;GPV=1;SPV=0.00096289;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,3:13,5 +chr6 88065469 . A G 0 PASS DP=68;GPV=1;SPV=2.5661e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:12,10:11,6 +chr6 89043428 . AG A 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr6 92442985 . C G 0 PASS DP=57;GPV=1;SPV=0.014243;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,1:11,7 +chr6 93937173 . C CA 0 PASS DP=60;GPV=1;SPV=0.025866;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,13:11,7:12,6 +chr6 95151289 . C G 0 PASS DP=60;GPV=1;SPV=0.013929;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,4:14,3 +chr6 95371823 . GTTGTTT G 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2 +chr6 97192213 . A G 0 PASS DP=70;GPV=1;SPV=0.08973;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,2:17,3 +chr6 97481994 . CT C 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr6 98077054 . G A 0 PASS DP=23;GPV=1;SPV=0.17647;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:6,4:1,3 +chr6 98634212 . A ATTT 0 PASS DP=53;GPV=1;SPV=0.0042118;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,11:7,4 +chr6 100608399 . TTA T 0 PASS DP=26;GPV=1;SPV=0.31385;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:6,1:9,2 +chr6 102523047 . G T 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,5:10,3 +chr6 102933593 . A G 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,9:11,3 +chr6 103023913 . TAC T 0 PASS DP=56;GPV=1;SPV=0.0033176;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,5:8,7 +chr6 103023923 . T C 0 PASS DP=54;GPV=1;SPV=0.0054007;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,5:8,7 +chr6 104186663 . T C 0 PASS DP=47;GPV=1;SPV=0.12525;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:8,5:20,1 +chr6 104555966 . T TG 0 PASS DP=35;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:8,3:5,2 +chr6 104555972 . G C 0 PASS DP=36;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:9,3:6,2 +chr6 104555973 . T TTCAGGATA 0 PASS DP=33;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,5:9,3:5,2 +chr6 104876020 . G A 0 PASS DP=70;GPV=1;SPV=0.0010684;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:9,3:20,8 +chr6 106439049 . TG T 0 PASS DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,1:12,5 +chr6 106896891 . C CAA 0 PASS DP=43;GPV=1;SPV=0.011004;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:12,11:3,3 +chr6 107532271 . AC A 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1 +chr6 110586974 . C G 0 PASS DP=65;GPV=1;SPV=0.0047824;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,7:18,4 +chr6 110836012 . CA C 0 PASS DP=38;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:18,5:2,1 +chr6 111646731 . C CAA 0 PASS DP=38;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,7:3,5:2,2 +chr6 112673463 . T G 0 PASS DP=62;GPV=1;SPV=0.0051975;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:14,7:9,11 +chr6 113484182 . T C 0 PASS DP=36;GPV=1;SPV=0.14093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,3:7,2 +chr6 116041678 . G T 0 PASS DP=70;GPV=1;SPV=0.00094527;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,6:10,6 +chr6 116668868 . T C 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,1:15,3 +chr6 118085487 . CT C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr6 118310282 . G C 0 PASS DP=60;GPV=1;SPV=4.1076e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:4,5:16,12 +chr6 118569343 . A C 0 PASS DP=38;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:1,1:3,1 +chr6 118709532 . C CGTGTGTGTGTGTGTGT 0 PASS DP=29;GPV=1;SPV=0.01373;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:1,4:5,1 +chr6 119529462 . C A 0 PASS DP=61;GPV=1;SPV=2.9628e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:12,5:8,12 +chr6 120099200 . CAA C 0 PASS DP=31;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,5:4,4:7,1 +chr6 121044217 . T C 0 PASS DP=63;GPV=1;SPV=8.9122e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,25:6,13:8,12 +chr6 122652309 . T A 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr6 124730414 . A C 0 PASS DP=38;GPV=1;SPV=0.012533;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,5:11,4 +chr6 125301484 . A ACACACACGCG 0 PASS DP=52;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:14,5:5,5 +chr6 127049658 . ATT A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chr6 127434577 . C CA 0 PASS DP=29;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1 +chr6 128402253 . GTT G 0 PASS DP=72;GPV=1;SPV=0.025525;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:22,3:12,7 +chr6 128717438 . T TAA 0 PASS DP=27;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2 +chr6 129718949 . A G 0 PASS DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,3:8,5 +chr6 131435804 . G C 0 PASS DP=62;GPV=1;SPV=3.2298e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,7:8,8 +chr6 133279108 . A T 0 PASS DP=65;GPV=1;SPV=2.6849e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,7:11,8 +chr6 133664412 . T C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr6 134155276 . C CA 0 PASS DP=45;GPV=1;SPV=0.041575;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,4:5,2 +chr6 134717115 . CAA C 0 PASS DP=31;GPV=1;SPV=0.00064073;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,12:1,9:4,3 +chr6 135398058 . GT G 0 PASS DP=43;GPV=1;SPV=0.022476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,8:7,5:2,3 +chr6 136560950 . T TATAAA 0 PASS DP=40;GPV=1;SPV=0.040415;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,4:7,4 +chr6 137454848 . C CATCT 0 PASS DP=51;GPV=1;SPV=0.031065;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,6:8,2 +chr6 137815658 . G A 0 PASS DP=54;GPV=1;SPV=0.082337;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,6:6,1:10,5 +chr6 138505652 . CA C 0 PASS DP=36;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:9,8:3,1 +chr6 138518577 . G C 0 PASS DP=48;GPV=1;SPV=0.0020064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,6:6,4 +chr6 139693438 . T A 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,4:12,2 +chr6 139836339 . ACC A 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1 +chr6 140064260 . A G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr6 140712153 . TTA T 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,2:12,3 +chr6 140713276 . GTATGTT G 0 PASS DP=51;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,5:5,3:12,2 +chr6 140713294 . G C 0 PASS DP=58;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,10:6,6:11,4 +chr6 140862078 . AC A 0 PASS DP=52;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:16,2:8,2 +chr6 141084311 . CAA C 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2 +chr6 141188441 . T TCTTCCTTC 0 PASS DP=23;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:0,1:5,3 +chr6 141192831 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.038078;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,6:7,1 +chr6 142093999 . TG T 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,5:6,2 +chr6 142359203 . T TA 0 PASS DP=41;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,4:11,1 +chr6 142638714 . GGAAA G 0 PASS DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2 +chr6 144103325 . TCCTTTCCTTTCCTTTCCTTTC T 0 PASS DP=69;GPV=1;SPV=0.044178;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,6:16,2 +chr6 144470478 . G T 0 PASS DP=62;GPV=1;SPV=0.0011821;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,7:17,4 +chr6 145235589 . CAT C 0 PASS DP=37;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:4,6:2,2 +chr6 146038052 . G A 0 PASS DP=61;GPV=1;SPV=0.0014979;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,21:7,6:13,15 +chr6 146179449 . T C 0 PASS DP=45;GPV=1;SPV=0.024094;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:9,9:9,7 +chr6 146819282 . A T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chr6 147213434 . A G 0 PASS DP=42;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,4:9,3:5,1 +chr6 148032223 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0055469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:6,7:4,1 +chr6 148101852 . CT C 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1 +chr6 151092970 . C T 0 PASS DP=67;GPV=1;SPV=0.0010743;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:15,12:8,10 +chr6 151146661 . C CAAAAAA 0 PASS DP=52;GPV=1;SPV=0.060632;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:13,5:16,3 +chr6 151335480 . G T 0 PASS DP=69;GPV=1;SPV=0.044278;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:13,3:14,8 +chr6 152444932 . G A 0 PASS DP=66;GPV=1;SPV=0.00056465;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:16,6:12,9 +chr6 154687581 . GT G 0 PASS DP=60;GPV=1;SPV=0.1208;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:22,3:10,1 +chr6 155632582 . A T 0 PASS DP=64;GPV=1;SPV=7.9328e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:12,9:10,5 +chr6 155823264 . A G 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2 +chr6 156801196 . CT C 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1 +chr6 157570780 . TAC T 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,3:13,1 +chr6 157992407 . T C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,1:12,3 +chr6 158308141 . A C 0 PASS DP=49;GPV=1;SPV=0.012187;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,9:8,2 +chr6 158348173 . G GTT 0 PASS DP=40;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,8:6,3 +chr6 158522390 . GTTTTTTTTTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=24;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:9,3:1,2 +chr6 158681836 . A C 0 PASS DP=69;GPV=1;SPV=7.061e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:16,9:10,8 +chr6 158715599 . T TCACACACACACACA 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr6 158936948 . CAA C 0 PASS DP=34;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,8:2,1 +chr6 159538338 . A AAAGAAAGAAAG 0 PASS DP=43;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,10:10,9:2,1 +chr6 159547632 . G C 0 PASS DP=42;GPV=1;SPV=0.0088303;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,5:3,5 +chr6 159637653 . C CT 0 PASS DP=34;GPV=1;SPV=0.0027765;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:2,9:4,2 +chr6 160092171 . G C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1 +chr6 160635080 . C T 0 PASS DP=342;GPV=1;SPV=0.0081003;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:166,19:62,6:104,13 +chr6 161315670 . A C 0 PASS DP=44;GPV=1;SPV=0.21854;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,4:15,1 +chr6 162645869 . T TCTC 0 PASS DP=19;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:2,5:3,1 +chr6 164648830 . A T 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,6:0,4:0,2 +chr6 164841517 . C CT 0 PASS DP=54;GPV=1;SPV=0.00065827;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:14,7:6,5 +chr6 164841520 . A T 0 PASS DP=57;GPV=1;SPV=2.5647e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:13,7:4,8 +chr6 165158307 . AT A 0 PASS DP=50;GPV=1;SPV=0.036877;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,3:7,5 +chr6 165883553 . A AAT 0 PASS DP=57;GPV=1;SPV=0.013433;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,14:7,3:14,11 +chr6 165890002 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr6 166206742 . T TA 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2 +chr6 167288451 . C A 0 PASS DP=62;GPV=1;SPV=0.23612;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:18,5:10,3:8,2 +chr6 167389686 . G A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1 +chr6 167389695 . CAT C 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,3:8,1 +chr6 168523082 . T C 0 PASS DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,1:9,4 +chr6 168615690 . A AGG 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1 +chr6 168618422 . T TAAG 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr6 168842816 . T A 0 PASS DP=51;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr6 168932574 . T G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr6 169372589 . C T 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr7 75720 . C T 0 PASS DP=59;GPV=1;SPV=0.0011576;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,7:9,2 +chr7 598462 . ACCCT A 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr7 685288 . ATG A 0 PASS DP=23;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,3:0,1:1,2 +chr7 897704 . C T 0 PASS DP=28;GPV=1;SPV=0.0011785;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:0,6:4,2 +chr7 1136379 . AATATATAAAC A 0 PASS DP=50;GPV=1;SPV=0.029742;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,4:8,2 +chr7 1623711 . T A 0 PASS DP=25;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr7 2563377 . G T 0 PASS DP=50;GPV=1;SPV=0.0036197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,1:4,9 +chr7 3321786 . T TTCTCCC 0 PASS DP=16;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:0,0:4,2 +chr7 3321828 . C T 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,3:6,3 +chr7 4139489 . A G 0 PASS DP=43;GPV=1;SPV=0.037194;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:6,4:10,3 +chr7 4139495 . G A 0 PASS DP=41;GPV=1;SPV=0.0048821;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:2,7:1,3:1,4 +chr7 4230039 . AGAAGGAAGGAAG A 0 PASS DP=25;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:5,3:4,1 +chr7 5009596 . G A 0 PASS DP=26;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,3:1,1:3,2 +chr7 5315430 . T G 0 PASS DP=53;GPV=1;SPV=0.013237;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr7 6791510 . A G 0 PASS DP=39;GPV=1;SPV=0.018966;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:10,5:1,1 +chr7 6810370 . T C 0 PASS DP=57;GPV=1;SPV=0.021538;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,3:3,2:2,1 +chr7 6818694 . AC A 0 PASS DP=54;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,6:13,4:4,2 +chr7 7678781 . ATT A 0 PASS DP=60;GPV=1;SPV=0.019711;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:17,3:11,4 +chr7 8828316 . T C 0 PASS DP=57;GPV=1;SPV=0.00019952;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,7:8,5 +chr7 9101580 . CCGAGAT C 0 PASS DP=39;GPV=1;SPV=0.0061699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,7:7,2 +chr7 9392156 . A AAAAT 0 PASS DP=45;GPV=1;SPV=9.7173e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,13:2,4:5,9 +chr7 10314129 . C CAAA 0 PASS DP=16;GPV=1;SPV=0.0034965;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2 +chr7 10464369 . C T 0 PASS DP=43;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,4:3,1 +chr7 15152600 . C G 0 PASS DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,4:9,6 +chr7 16605673 . A C 0 PASS DP=28;GPV=1;SPV=0.00761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:2,7:1,3:1,4 +chr7 16677051 . C CTT 0 PASS DP=23;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2 +chr7 19524984 . C T 0 PASS DP=19;GPV=1;SPV=0.0021645;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,5:0,2:0,3 +chr7 20668377 . C A 0 PASS DP=98;GPV=1;SPV=0.010201;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:34,2:7,4 +chr7 20944718 . TTTTTG T 0 PASS DP=45;GPV=1;SPV=0.0062751;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4 +chr7 22831406 . A C 0 PASS DP=30;GPV=1;SPV=0.00084958;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:5,6:0,4 +chr7 22934226 . T C 0 PASS DP=39;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:3,1:1,1 +chr7 23036374 . T C 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,3:3,2 +chr7 24338299 . TA T 0 PASS DP=47;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:11,2:8,4 +chr7 25488415 . C CCTCTCTCTCTCTCTCTCT 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,4:7,1 +chr7 26261914 . G A 0 PASS DP=53;GPV=1;SPV=0.0043971;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,2:8,4 +chr7 27510588 . TA T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr7 28980322 . C A 0 PASS DP=27;GPV=1;SPV=0.00037084;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:0,7:1,1 +chr7 29396459 . CA C 0 PASS DP=31;GPV=1;SPV=0.012399;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr7 29643558 . C CAACTGTCCTCTTCTGAAGAAGAGAA 0 PASS DP=41;GPV=1;SPV=0.0043071;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3 +chr7 30557312 . CT C 0 PASS DP=48;GPV=1;SPV=2.4682e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,17:5,10:3,7 +chr7 31586467 . G T 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3 +chr7 32380404 . A ATTT 0 PASS DP=39;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,10:3,5:4,5 +chr7 32466943 . T A 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,5:3,2 +chr7 32466948 . G A 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,5:3,3 +chr7 32682216 . T C 0 PASS DP=51;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,4:5,2:2,2 +chr7 33411011 . G T 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr7 34663041 . T TTCTCTCTCTCTCTCTC 0 PASS DP=24;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:3,3:3,2 +chr7 36417674 . C CT 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2 +chr7 36543947 . C CTTTCTT 0 PASS DP=23;GPV=1;SPV=0.0031992;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:2,6:2,4:0,2 +chr7 37467163 . T G 0 PASS DP=71;GPV=1;SPV=3.5497e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,4:10,9 +chr7 42888090 . T TGCGC 0 PASS DP=23;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:1,1:5,3 +chr7 43644726 . A AT 0 PASS DP=28;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,2:1,1:1,1 +chr7 43974329 . G A 0 PASS DP=44;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,1:11,4 +chr7 43986652 . T C 0 PASS DP=82;GPV=1;SPV=0.041121;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:12,8:20,2 +chr7 45711646 . C T 0 PASS DP=31;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,3:1,2:2,1 +chr7 45753114 . GT G 0 PASS DP=35;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:4,4:3,2 +chr7 46062612 . T A 0 PASS DP=32;GPV=1;SPV=0.04308;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1 +chr7 47674091 . A G 0 PASS DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1 +chr7 47674098 . AAAG A 0 PASS DP=28;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr7 48245005 . C T 0 PASS DP=44;GPV=1;SPV=0.049827;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,2:8,7 +chr7 48475458 . ATT A 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,3:4,5 +chr7 48895669 . A T 0 PASS DP=30;GPV=1;SPV=0.018062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,2:4,2 +chr7 49800848 . CA C 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr7 52688239 . GTATATATA G 0 PASS DP=61;GPV=1;SPV=0.0011717;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:9,13:13,10 +chr7 52926813 . C T 0 PASS DP=54;GPV=1;SPV=0.062087;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:10,1:9,2 +chr7 53890193 . C G 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1 +chr7 53900376 . CAG C 0 PASS DP=56;GPV=1;SPV=0.022272;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:10,7:12,6 +chr7 54138307 . TCTC T 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:16,2:5,2 +chr7 55402077 . G GC 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:26,2:4,2 +chr7 55936265 . A C 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,2:14,2 +chr7 56574856 . C CAA 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:11,4:4,1 +chr7 57321339 . AAATAG A 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr7 57321345 . G T 0 PASS DP=40;GPV=1;SPV=0.00015096;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,12:5,8:3,4 +chr7 58080961 . G T 0 PASS DP=302;GPV=1;SPV=0.013015;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:131,24:78,12:53,12 +chr7 58081744 . C T 0 PASS DP=150;GPV=1;SPV=0.020186;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:81,11:35,6:46,5 +chr7 60756709 . T C 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:22,4:1,0 +chr7 60954031 . G A 0 PASS DP=93;GPV=1;SPV=0.010686;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:16,4:23,2 +chr7 60958391 . C T 0 PASS DP=126;GPV=1;SPV=0.015187;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:18,6:29,6 +chr7 61133326 . G C 0 PASS DP=53;GPV=1;SPV=0.25208;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:31,4:3,0 +chr7 61395961 . T C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,2:10,2 +chr7 61409965 . G A 0 PASS DP=149;GPV=1;SPV=0.024174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:67,12:28,5:39,7 +chr7 62080576 . C T 0 PASS DP=21;GPV=1;SPV=0.0089783;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5 +chr7 62264353 . CT C 0 PASS DP=75;GPV=1;SPV=0.023608;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:21,1:11,7 +chr7 62264369 . C G 0 PASS DP=75;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:19,1:15,5 +chr7 62274256 . T A 0 PASS DP=163;GPV=1;SPV=0.0075629;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:33,2:40,10 +chr7 62321093 . T A 0 PASS DP=105;GPV=1;SPV=0.033331;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:51,16:26,8:25,8 +chr7 62327707 . C T 0 PASS DP=85;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,1:24,4 +chr7 62337980 . GAATGGAACCGAAAGGAATCATCATCA G 0 PASS DP=58;GPV=1;SPV=0.040001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,4:12,7 +chr7 63122235 . A G 0 PASS DP=42;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,3:6,7 +chr7 63188033 . G GCACA 0 PASS DP=70;GPV=1;SPV=0.0094129;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:17,9:3,1 +chr7 63537977 . T C 0 PASS DP=62;GPV=1;SPV=0.019369;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:13,4:16,9 +chr7 63598018 . C T 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr7 63604438 . C A 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,4:6,1 +chr7 63758856 . G C 0 PASS DP=302;GPV=1;SPV=0.018818;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:143,25:97,16:46,9 +chr7 64337755 . G GTT 0 PASS DP=44;GPV=1;SPV=0.0099524;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:8,7:9,3 +chr7 64963887 . A ATATATATATATATGTATG 0 PASS DP=32;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,5:5,4 +chr7 65587022 . G T 0 PASS DP=76;GPV=1;SPV=0.0049761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:14,2:21,7 +chr7 65588278 . C A 0 PASS DP=69;GPV=1;SPV=0.019393;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:16,3:15,3 +chr7 67435582 . C CT 0 PASS DP=22;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,5:3,1 +chr7 67730634 . A G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr7 67827049 . GTTTTTTTTTT G 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr7 67956975 . CA C 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,5:4,1 +chr7 68268808 . T TTC 0 PASS DP=31;GPV=1;SPV=0.10122;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:1,0:11,3 +chr7 68363965 . C T 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr7 68545791 . C T 0 PASS DP=24;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:0,1:1,1 +chr7 68545794 . T C 0 PASS DP=24;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:0,1:1,1 +chr7 68769865 . A AACACACACACACACACACACACAC 0 PASS DP=34;GPV=1;SPV=0.13168;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,4:6,2 +chr7 69542156 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:7,5:1,1 +chr7 70004169 . T TTA 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,4:14,2 +chr7 70873247 . CA C 0 PASS DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,7:3,2 +chr7 71431207 . TTC T 0 PASS DP=37;GPV=1;SPV=0.0065689;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,4:8,5 +chr7 71431210 . T C 0 PASS DP=28;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:2,1:5,1 +chr7 71571092 . AC A 0 PASS DP=46;GPV=1;SPV=0.090497;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3 +chr7 71947570 . G C 0 PASS DP=62;GPV=1;SPV=9.1194e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,8:9,6 +chr7 72088685 . T G 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:7,9:6,7 +chr7 72393730 . T C 0 PASS DP=55;GPV=1;SPV=0.0036289;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:12,9:9,8 +chr7 72408270 . T TA 0 PASS DP=38;GPV=1;SPV=0.0045179;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,11:5,5:4,6 +chr7 73156171 . C G 0 PASS DP=56;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,4:8,2:15,2 +chr7 74339293 . T TTTA 0 PASS DP=64;GPV=1;SPV=0.12625;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:15,4:23,1 +chr7 74528869 . AGATGGATGGATG A 0 PASS DP=26;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,6:1,5:0,1 +chr7 74667836 . C CTT 0 PASS DP=52;GPV=1;SPV=0.0038515;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,12:9,7:7,5 +chr7 74915735 . G C 0 PASS DP=117;GPV=1;SPV=0.036689;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:53,15:20,4:33,11 +chr7 75371230 . G A 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,2:6,2 +chr7 75500789 . A G 0 PASS DP=68;GPV=1;SPV=0.011392;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,2:8,3 +chr7 75611466 . C CAA 0 PASS DP=48;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:9,4:6,2 +chr7 75906820 . C T 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr7 75906821 . T C 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr7 75906823 . A G 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr7 76414696 . C CT 0 PASS DP=17;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,0:2,4 +chr7 76448259 . G T 0 PASS DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,3:9,3 +chr7 76536740 . C T 0 PASS DP=44;GPV=1;SPV=0.13372;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:9,1:11,2 +chr7 76537020 . C CA 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:1,4:5,1 +chr7 76606873 . A C 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr7 76652548 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2 +chr7 76740475 . T G 0 PASS DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2 +chr7 76991438 . G A 0 PASS DP=62;GPV=1;SPV=0.014976;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5 +chr7 76993485 . T C 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3 +chr7 77039407 . C T 0 PASS DP=44;GPV=1;SPV=0.035511;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,8:5,1 +chr7 77060836 . G C 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,1:10,5 +chr7 77334580 . T TA 0 PASS DP=32;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:5,6:3,3 +chr7 77747911 . C CG 0 PASS DP=49;GPV=1;SPV=0.018294;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2 +chr7 78085583 . A C 0 PASS DP=44;GPV=1;SPV=0.00022435;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,8:3,3:0,5 +chr7 78762144 . G GAACAAGTAGAGATTTTTGGATTAA 0 PASS DP=60;GPV=1;SPV=0.018073;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,6:8,1 +chr7 78806867 . CAAAAT C 0 PASS DP=40;GPV=1;SPV=0.0020052;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:8,7:3,5 +chr7 79442451 . A AGTGTGTGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:3,4:2,3 +chr7 80604350 . ATTTTTTTTTTTTTTT A 0 PASS DP=20;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:3,2:0,1 +chr7 80920557 . GTGTCTCAGACTCACGC G 0 PASS DP=66;GPV=1;SPV=1.757e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:7,7:11,5 +chr7 81217947 . G A 0 PASS DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,2:15,3 +chr7 82012254 . G GAAAA 0 PASS DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,7:8,8 +chr7 82040452 . C CAAA 0 PASS DP=28;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,7:3,6:1,1 +chr7 83539872 . T C 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,3:6,1 +chr7 84008509 . G A 0 PASS DP=38;GPV=1;SPV=0.047386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,4:1,2:2,2 +chr7 84024011 . C CA 0 PASS DP=29;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,10:3,8:1,2 +chr7 85476603 . T TTATATATATATATATA 0 PASS DP=27;GPV=1;SPV=0.0011899;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,6:0,2 +chr7 87233899 . G GTT 0 PASS DP=28;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,10:1,9:1,1 +chr7 87924871 . C G 0 PASS DP=56;GPV=1;SPV=0.00091169;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,4:7,5 +chr7 90074354 . A C 0 PASS DP=28;GPV=1;SPV=0.00066955;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:4,13:1,2:3,11 +chr7 90791903 . C CTT 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr7 91211567 . T TAA 0 PASS DP=20;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1 +chr7 92516053 . GAA G 0 PASS DP=31;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:1,5:4,1 +chr7 93204324 . CTCTA C 0 PASS DP=56;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,4:13,5 +chr7 94076128 . T G 0 PASS DP=62;GPV=1;SPV=0.00027944;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5 +chr7 94381648 . T TTCTCTCTCTCTC 0 PASS DP=32;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:3,4:4,2 +chr7 94557386 . T A 0 PASS DP=51;GPV=1;SPV=0.0021522;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,1:4,5 +chr7 97363467 . G GTCTGTCTATCTATCTATCTATCTA 0 PASS DP=45;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,1:10,3 +chr7 98439443 . CT C 0 PASS DP=25;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:0,1:9,5 +chr7 99181147 . CTCCGTCTGTG C 0 PASS DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2 +chr7 100325052 . A T 0 PASS DP=84;GPV=1;SPV=0.0090684;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:17,4:17,5 +chr7 100495714 . C CA 0 PASS DP=34;GPV=1;SPV=0.037021;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,4:2,1 +chr7 100911046 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,5:8,1 +chr7 100996823 . C T 0 PASS DP=71;GPV=1;SPV=0.03701;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4 +chr7 101000294 . C T 0 PASS DP=260;GPV=1;SPV=0.017512;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:103,14:37,5:66,9 +chr7 101035091 . T G 0 PASS DP=69;GPV=1;SPV=0.03525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,6:10,4 +chr7 101636212 . A G 0 PASS DP=21;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:4,3:1,2 +chr7 101680995 . GCA G 0 PASS DP=57;GPV=1;SPV=0.01571;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:7,2:14,3 +chr7 102180904 . TTATTTTATTTTATTG T 0 PASS DP=50;GPV=1;SPV=0.0041421;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:8,6:9,5 +chr7 102189365 . C G 0 PASS DP=22;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:4,1:1,1 +chr7 102497057 . G A 0 PASS DP=177;GPV=1;SPV=0.013846;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:59,15:32,8:27,7 +chr7 102520792 . C T 0 PASS DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1 +chr7 102578254 . C T 0 PASS DP=206;GPV=1;SPV=0.01884;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:81,16:33,7:48,9 +chr7 102581314 . C T 0 PASS DP=167;GPV=1;SPV=0.014308;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:65,12:28,8:37,4 +chr7 102603623 . T C 0 PASS DP=258;GPV=1;SPV=0.0050406;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:88,19:54,5:34,14 +chr7 102604828 . C T 0 PASS DP=82;GPV=1;SPV=0.018609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:16,6:14,5 +chr7 102606201 . AC A 0 PASS DP=270;GPV=1;SPV=0.029722;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:109,16:37,8:72,8 +chr7 102613305 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr7 102653761 . G A 0 PASS DP=234;GPV=1;SPV=0.014869;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:80,21:61,15:19,6 +chr7 102667770 . C T 0 PASS DP=306;GPV=1;SPV=0.018833;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:124,20:83,9:41,11 +chr7 102679488 . G A 0 PASS DP=46;GPV=1;SPV=0.0078687;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,2:6,5 +chr7 102737451 . T G 0 PASS DP=51;GPV=1;SPV=0.081933;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,2:7,2 +chr7 102779850 . CTTT C 0 PASS DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1 +chr7 102788030 . T C 0 PASS DP=49;GPV=1;SPV=0.001713;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,1:5,8 +chr7 104258838 . C CTTTTTTTTTTTTT 0 PASS DP=26;GPV=1;SPV=0.0055336;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,1:3,3 +chr7 104507458 . CAAGATGGATTA C 0 PASS DP=34;GPV=1;SPV=0.0011962;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,1:2,6 +chr7 104565760 . T TA 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,2:12,2 +chr7 104841491 . G GGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.0039969;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:2,3:3,5 +chr7 104947086 . C CA 0 PASS DP=36;GPV=1;SPV=0.04366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:1,4:6,1 +chr7 105731748 . A AAAAAGAAAAGAAAAGAAAAGAAAAGAG 0 PASS DP=24;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,2:3,3 +chr7 105845204 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2 +chr7 106375993 . C CA 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,5:2,2 +chr7 106933413 . CAA C 0 PASS DP=23;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr7 107112003 . C CA 0 PASS DP=31;GPV=1;SPV=0.00082523;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1 +chr7 108706816 . A G 0 PASS DP=37;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,4:3,1:3,3 +chr7 109368724 . A C 0 PASS DP=59;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:3,2:2,1:1,1 +chr7 109379377 . A C 0 PASS DP=72;GPV=1;SPV=1.689e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,6:7,7 +chr7 109663678 . GATATATAGATATAGATATAGAT G 0 PASS DP=28;GPV=1;SPV=0.0032938;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,3:4,3 +chr7 112058024 . A AT 0 PASS DP=37;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:3,7:5,3 +chr7 113134236 . AATAG A 0 PASS DP=37;GPV=1;SPV=0.0087276;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,4:3,5 +chr7 114043821 . T TTTTATA 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,2:3,4 +chr7 115974451 . A T 0 PASS DP=35;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,4:1,2:4,2 +chr7 116706888 . AT A 0 PASS DP=39;GPV=1;SPV=0.0020691;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2 +chr7 117817362 . AT A 0 PASS DP=23;GPV=1;SPV=0.0024902;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:0,7:3,1 +chr7 118363955 . T A 0 PASS DP=38;GPV=1;SPV=0.011586;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:6,4:5,1 +chr7 120561598 . ATT A 0 PASS DP=23;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr7 121047646 . TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC T 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr7 121526189 . G GAGATATATATATATAT 0 PASS DP=24;GPV=1;SPV=0.00021109;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,7:1,6:1,1 +chr7 121691029 . C CAGAGAGAGAG 0 PASS DP=31;GPV=1;SPV=0.0085986;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,4:2,1 +chr7 123443670 . T A 0 PASS DP=43;GPV=1;SPV=1.6458e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:4,12:2,5:2,7 +chr7 123581414 . T TAAA 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:8,4:3,5 +chr7 123808418 . C CGT 0 PASS DP=50;GPV=1;SPV=0.0006886;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,17:5,8:4,9 +chr7 124387962 . C CT 0 PASS DP=34;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,10:4,2 +chr7 124414904 . T TCA 0 PASS DP=24;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:4,3:0,2 +chr7 124518625 . GA G 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:3,6:3,2 +chr7 124564094 . T A 0 PASS DP=81;GPV=1;SPV=3.4344e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,4:10,6 +chr7 125478434 . TA T 0 PASS DP=41;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2 +chr7 126218418 . GTGTACACATATA G 0 PASS DP=26;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:6,1:0,4 +chr7 126292042 . G GA 0 PASS DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr7 127422451 . G T 0 PASS DP=47;GPV=1;SPV=0.034545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:6,4:4,2 +chr7 128131301 . A AT 0 PASS DP=36;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,1:3,7 +chr7 130119538 . A T 0 PASS DP=38;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,2:1,1:1,1 +chr7 130759489 . A ATT 0 PASS DP=25;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,8:2,4:2,4 +chr7 130920160 . A G 0 PASS DP=26;GPV=1;SPV=0.023452;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,2:0,2 +chr7 131868548 . A T 0 PASS DP=35;GPV=1;SPV=0.028878;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:2,3:6,2 +chr7 132955173 . G GGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:7,4:1,1 +chr7 135192108 . GTTT G 0 PASS DP=36;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,2:3,4 +chr7 135236276 . G A 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,4:10,1 +chr7 135941380 . A ACAATGGGGAATGTCATATGCATTCCCCATTGTTG 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3 +chr7 136038520 . G GTA 0 PASS DP=24;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3 +chr7 136065677 . A AAAAT 0 PASS DP=45;GPV=1;SPV=0.0020274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:3,5:8,7 +chr7 136452567 . G A 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,3:11,6 +chr7 136532076 . G T 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3 +chr7 136760172 . C CT 0 PASS DP=24;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr7 136867784 . C CATAT 0 PASS DP=24;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,2:0,2 +chr7 136874525 . CT C 0 PASS DP=19;GPV=1;SPV=0.00011908;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,3:0,7 +chr7 136987427 . C A 0 PASS DP=53;GPV=1;SPV=0.0016883;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:4,1:10,5 +chr7 137056937 . G A 0 PASS DP=40;GPV=1;SPV=0.0048364;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,4:3,2 +chr7 137310404 . GT G 0 PASS DP=26;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:3,1:1,1 +chr7 137568378 . C T 0 PASS DP=60;GPV=1;SPV=3.8045e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,6:7,5 +chr7 138682968 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:4,7:3,1 +chr7 140186261 . C A 0 PASS DP=54;GPV=1;SPV=0.0082407;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,7:9,3 +chr7 142970475 . C CCACACA 0 PASS DP=45;GPV=1;SPV=0.040449;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr7 143045562 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,10:6,9:3,1 +chr7 143070681 . T C 0 PASS DP=60;GPV=1;SPV=0.050949;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:17,1:12,4 +chr7 143427579 . ATTATTTAT A 0 PASS DP=36;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:4,2:10,3 +chr7 143886700 . C CTT 0 PASS DP=26;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:2,2:9,3 +chr7 144281139 . T C 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2 +chr7 145148983 . AAAG A 0 PASS DP=36;GPV=1;SPV=0.0025696;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,2:4,4 +chr7 146679347 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr7 146855807 . GTATATATATATATATATATA G 0 PASS DP=22;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,9:1,6:1,3 +chr7 146855829 . A G 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,5:3,2 +chr7 148529630 . A C 0 PASS DP=49;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,2:0,1:0,1 +chr7 148948385 . G C 0 PASS DP=56;GPV=1;SPV=0.038176;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:11,5:15,5 +chr7 148990009 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=18;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr7 149323885 . T A 0 PASS DP=47;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1 +chr7 149981276 . G A 0 PASS DP=52;GPV=1;SPV=6.5514e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:5,3:6,9 +chr7 150752761 . A C 0 PASS DP=45;GPV=1;SPV=0.027778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,2:0,1:0,1 +chr7 150962627 . C CAGAG 0 PASS DP=35;GPV=1;SPV=0.00030073;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,13:3,3:3,10 +chr7 152238768 . T C 0 PASS DP=61;GPV=1;SPV=0.026034;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,1:13,8 +chr7 152283172 . T C 0 PASS DP=111;GPV=1;SPV=0.0089913;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:25,4:21,2 +chr7 152378897 . A C 0 PASS DP=50;GPV=1;SPV=0.032315;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,3:8,4 +chr7 152382577 . T C 0 PASS DP=260;GPV=1;SPV=0.0033915;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:109,26:84,19:25,7 +chr7 152544996 . TA T 0 PASS DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:9,4:1,1 +chr7 154051071 . G A 0 PASS DP=27;GPV=1;SPV=0.0057228;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr7 154059029 . G T 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,6:7,3 +chr7 154817763 . C G 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,5:4,5 +chr7 155158292 . G GAA 0 PASS DP=31;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,5:5,2:2,3 +chr7 155158307 . G A 0 PASS DP=29;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:3,1:3,2 +chr7 155158310 . A G 0 PASS DP=31;GPV=1;SPV=0.028708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:1,2:5,2 +chr7 155520428 . CTTTTTTTT C 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,5:3,2 +chr7 155564150 . AAAG A 0 PASS DP=42;GPV=1;SPV=0.023921;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4 +chr7 155655534 . C CTT 0 PASS DP=29;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:4,5:2,1 +chr7 156352452 . G T 0 PASS DP=61;GPV=1;SPV=3.6248e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,7:5,3 +chr7 156489572 . T C 0 PASS DP=16;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2 +chr7 157500116 . C T 0 PASS DP=56;GPV=1;SPV=0.0031215;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,6:1,4:5,2 +chr8 82445 . A G 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr8 320631 . C T 0 PASS DP=65;GPV=1;SPV=0.00097095;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:18,6:9,6 +chr8 909568 . C T 0 PASS DP=37;GPV=1;SPV=0.023342;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,2:4,4 +chr8 1088941 . A G 0 PASS DP=24;GPV=1;SPV=0.011374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,5:2,5 +chr8 1092551 . G T 0 PASS DP=71;GPV=1;SPV=3.5507e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,9:13,6 +chr8 1316402 . A G 0 PASS DP=39;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4 +chr8 2367332 . GA G 0 PASS DP=48;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,3:7,7 +chr8 2787891 . T TCATTTTTACAATGAAGGGGATCTGAGTAATGTCCCC 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2 +chr8 3539763 . T TAA 0 PASS DP=50;GPV=1;SPV=0.041361;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,14:12,10:9,4 +chr8 3720623 . A T 0 PASS DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,3:8,6 +chr8 6332561 . C CTT 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,3:5,4 +chr8 7407194 . T C 0 PASS DP=33;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,4:5,2 +chr8 7407195 . G A 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,4:6,2 +chr8 7407218 . CT C 0 PASS DP=62;GPV=1;SPV=0.005919;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,11:9,3 +chr8 8037533 . G A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,3:5,1 +chr8 8072408 . T TTTC 0 PASS DP=27;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:12,4:0,0 +chr8 8127826 . C T 0 PASS DP=47;GPV=1;SPV=0.042883;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,2:13,3 +chr8 8127981 . G A 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr8 8161332 . C A 0 PASS DP=137;GPV=1;SPV=0.013695;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:67,10:42,4:25,6 +chr8 8184705 . C G 0 PASS DP=82;GPV=1;SPV=0.029712;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:23,6:16,3 +chr8 8191363 . G A 0 PASS DP=222;GPV=1;SPV=0.033436;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:108,19:66,10:42,9 +chr8 8313737 . T A 0 PASS DP=43;GPV=1;SPV=0.034956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,1:10,4 +chr8 8450684 . TGA T 0 PASS DP=53;GPV=1;SPV=0.096964;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:9,4:20,1 +chr8 8450711 . C T 0 PASS DP=55;GPV=1;SPV=0.024853;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,5:14,3 +chr8 8581440 . T TA 0 PASS DP=52;GPV=1;SPV=0.019537;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,5:12,6 +chr8 8701105 . A G 0 PASS DP=48;GPV=1;SPV=0.010406;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,7:9,4 +chr8 8887863 . A C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chr8 8887867 . A C 0 PASS DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4 +chr8 11533605 . A G 0 PASS DP=38;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,4:4,1:4,3 +chr8 12109141 . G A 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4 +chr8 12211109 . T C 0 PASS DP=70;GPV=1;SPV=0.0031674;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:13,4:6,7 +chr8 12433238 . A G 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:4,3:3,8 +chr8 12470177 . A G 0 PASS DP=72;GPV=1;SPV=0.0031923;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:10,4:12,9 +chr8 12480417 . C T 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3 +chr8 12484897 . C A 0 PASS DP=60;GPV=1;SPV=0.036585;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,5:11,4 +chr8 12501672 . G C 0 PASS DP=49;GPV=1;SPV=0.24713;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,2:16,2 +chr8 12511928 . C T 0 PASS DP=87;GPV=1;SPV=0.043162;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,7:26,1:23,6 +chr8 12532508 . T A 0 PASS DP=146;GPV=1;SPV=0.029122;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:50,11:10,5 +chr8 12540557 . C A 0 PASS DP=175;GPV=1;SPV=0.04744;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:84,16:46,10:38,6 +chr8 12545361 . G A 0 PASS DP=225;GPV=1;SPV=0.04919;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:48,10:49,11 +chr8 12548464 . C A 0 PASS DP=223;GPV=1;SPV=0.045745;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:110,21:52,15:58,6 +chr8 12559662 . T C 0 PASS DP=183;GPV=1;SPV=0.018008;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:85,21:48,11:37,10 +chr8 12560570 . A G 0 PASS DP=153;GPV=1;SPV=0.027097;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:70,12:33,5:37,7 +chr8 12578103 . A T 0 PASS DP=217;GPV=1;SPV=0.031901;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:99,19:49,11:50,8 +chr8 12584227 . G A 0 PASS DP=194;GPV=1;SPV=0.038707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:97,21:52,14:45,7 +chr8 12584800 . T A 0 PASS DP=219;GPV=1;SPV=0.017519;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:108,26:50,12:58,14 +chr8 12589388 . C T 0 PASS DP=214;GPV=1;SPV=0.038797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:43,6:51,13 +chr8 12592376 . C T 0 PASS DP=139;GPV=1;SPV=0.034756;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:32,3:37,11 +chr8 12608132 . C T 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,2:11,2 +chr8 13042708 . G T 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,4:6,2 +chr8 13553224 . ATATG A 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:2,1:1,2 +chr8 13614857 . CT C 0 PASS DP=32;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:3,3:7,4 +chr8 14326030 . C G 0 PASS DP=47;GPV=1;SPV=0.0050687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,5:8,4 +chr8 15638515 . CTTT C 0 PASS DP=21;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1 +chr8 16414935 . CT C 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,2:4,5 +chr8 16460759 . TAGAAAA T 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2 +chr8 16460780 . T A 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr8 16673028 . A T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,4:12,3 +chr8 16708327 . TAC T 0 PASS DP=74;GPV=1;SPV=0.042684;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,4:13,4 +chr8 16776799 . G GCACACA 0 PASS DP=30;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3 +chr8 17054738 . C CT 0 PASS DP=26;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1 +chr8 17590236 . C CAAA 0 PASS DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:0,6:4,3 +chr8 17796289 . T C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3 +chr8 17968764 . A G 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,4:15,1 +chr8 18968879 . CAA C 0 PASS DP=37;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:4,5:1,1 +chr8 19102346 . T C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr8 20082331 . C CA 0 PASS DP=19;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,3:1,2 +chr8 20318613 . G T 0 PASS DP=75;GPV=1;SPV=3.3009e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:11,17:14,4 +chr8 21182320 . C CA 0 PASS DP=44;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:9,7:1,4 +chr8 22759117 . C T 0 PASS DP=65;GPV=1;SPV=0.00014072;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,6:11,7 +chr8 23631286 . CATATATATATATATATATATATAT C 0 PASS DP=28;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3 +chr8 24938125 . G GGAAAGAAA 0 PASS DP=40;GPV=1;SPV=0.080504;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,8:12,7:8,1 +chr8 25232260 . G GTTT 0 PASS DP=45;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,1:14,3 +chr8 25331803 . G T 0 PASS DP=45;GPV=1;SPV=0.33939;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,3:4,2:1,1 +chr8 25774803 . T TAC 0 PASS DP=40;GPV=1;SPV=0.0042363;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,15:2,9:3,6 +chr8 26069825 . C CTTTTTTTTTT 0 PASS DP=29;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr8 27715861 . G C 0 PASS DP=57;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,5:7,3:12,2 +chr8 27730488 . A ATTT 0 PASS DP=31;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:1,6:2,4 +chr8 28085241 . C CT 0 PASS DP=41;GPV=1;SPV=0.0057147;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:7,7:6,9 +chr8 29371713 . C CATATATAT 0 PASS DP=39;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,10:3,9:6,1 +chr8 31170775 . T A 0 PASS DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:13,5:17,1 +chr8 31334164 . C CT 0 PASS DP=45;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,7:6,2 +chr8 34256937 . C A 0 PASS DP=24;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:0,0:1,2 +chr8 34824883 . TC T 0 PASS DP=42;GPV=1;SPV=0.028586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,12:11,8:9,4 +chr8 35043583 . T G 0 PASS DP=40;GPV=1;SPV=0.22404;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chr8 35090325 . A C 0 PASS DP=75;GPV=1;SPV=1.7643e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,5:12,10 +chr8 35615034 . G C 0 PASS DP=22;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,3:0,2:2,1 +chr8 35615036 . G C 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,2:0,1:2,1 +chr8 38028359 . A AT 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,5:10,4 +chr8 40881282 . A G 0 PASS DP=45;GPV=1;SPV=0.00081203;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,20:5,9:7,11 +chr8 41140138 . A T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,3:10,1 +chr8 41803137 . A AG 0 PASS DP=38;GPV=1;SPV=0.093821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,5:9,2 +chr8 42070064 . CT C 0 PASS DP=33;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,4:4,1 +chr8 43299183 . CTCTT C 0 PASS DP=48;GPV=1;SPV=0.0082367;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,7:11,1 +chr8 47537201 . T G 0 PASS DP=68;GPV=1;SPV=2.1107e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,10:12,5 +chr8 48254061 . A G 0 PASS DP=57;GPV=1;SPV=2.7719e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,6:9,7 +chr8 49207715 . G T 0 PASS DP=36;GPV=1;SPV=0.013888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:12,8:3,1 +chr8 49207716 . A C 0 PASS DP=45;GPV=1;SPV=0.029089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,8:4,1 +chr8 49938598 . T TTTC 0 PASS DP=57;GPV=1;SPV=0.10204;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:11,5:24,2 +chr8 49938611 . C T 0 PASS DP=49;GPV=1;SPV=0.31172;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,1:20,3 +chr8 51074748 . TC T 0 PASS DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:7,6:10,7 +chr8 51957232 . A AGT 0 PASS DP=44;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,8:9,7:4,1 +chr8 52643697 . A C 0 PASS DP=43;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,2:2,1:4,1 +chr8 53563137 . A G 0 PASS DP=70;GPV=1;SPV=2.5231e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,7:9,6 +chr8 54002468 . C CA 0 PASS DP=58;GPV=1;SPV=0.012179;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,13:16,9:5,4 +chr8 54110344 . T TGAGGCAGGAGAATTGCTTGAACCTGG 0 PASS DP=55;GPV=1;SPV=0.10482;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:23,3:16,1:7,2 +chr8 54347624 . A G 0 PASS DP=75;GPV=1;SPV=0.00074957;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:17,5:10,4 +chr8 54661310 . T TCA 0 PASS DP=62;GPV=1;SPV=0.1208;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:21,2:11,2 +chr8 57052018 . T A 0 PASS DP=63;GPV=1;SPV=0.014803;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,3:15,6 +chr8 57206208 . G A 0 PASS DP=683;GPV=1;SPV=0.021319;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:389:342,47:105,20:237,27 +chr8 57361008 . C A 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,6:9,6 +chr8 58189295 . A ATT 0 PASS DP=27;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr8 60419394 . C CTT 0 PASS DP=42;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,6:1,1 +chr8 60868355 . TTG T 0 PASS DP=62;GPV=1;SPV=0.037817;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:20,2:11,4 +chr8 61268844 . A G 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,2:12,2 +chr8 62031560 . T G 0 PASS DP=71;GPV=1;SPV=4.1304e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:20,22:6,10:14,12 +chr8 62102904 . C T 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1 +chr8 62345374 . CAT C 0 PASS DP=27;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:1,3:3,3 +chr8 62506476 . C CTTTCTTTCTTTT 0 PASS DP=39;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:6,3:10,1 +chr8 62595382 . C CTT 0 PASS DP=33;GPV=1;SPV=0.17001;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:13,5:4,1 +chr8 63271871 . C A 0 PASS DP=41;GPV=1;SPV=0.0037321;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,3:6,6 +chr8 63370298 . C T 0 PASS DP=70;GPV=1;SPV=3.9131e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,3:8,8 +chr8 63835824 . GA G 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:18,3:8,5 +chr8 64044695 . A AAAAGAAAGAAAGAAAG 0 PASS DP=32;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:15,4:1,0 +chr8 64244709 . A G 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,1:9,3 +chr8 64353844 . C CATAT 0 PASS DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:6,2:2,2 +chr8 64448512 . A T 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,4:9,6 +chr8 64940741 . G A 0 PASS DP=68;GPV=1;SPV=7.3665e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,5:14,8 +chr8 64987657 . GC G 0 PASS DP=35;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,3:5,4 +chr8 65520675 . G GTT 0 PASS DP=33;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:9,2:5,2 +chr8 66042597 . CTCT C 0 PASS DP=28;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:2,1:4,7 +chr8 66669119 . TTG T 0 PASS DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,6:6,3 +chr8 67468626 . T TAA 0 PASS DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:24,2:14,3 +chr8 68164585 . C CTT 0 PASS DP=42;GPV=1;SPV=0.00048402;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,12:8,10:4,2 +chr8 68754470 . G T 0 PASS DP=63;GPV=1;SPV=0.0097212;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:18,5:15,8 +chr8 71769341 . A G 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2 +chr8 72299643 . C CT 0 PASS DP=30;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,5:7,4:4,1 +chr8 72491880 . G A 0 PASS DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,4:0,1 +chr8 72920437 . C T 0 PASS DP=29;GPV=1;SPV=0.20399;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,2:9,2 +chr8 73479472 . G GCACACACACACACA 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,1:12,3 +chr8 73637520 . G GA 0 PASS DP=17;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,5:1,1 +chr8 73715467 . G A 0 PASS DP=48;GPV=1;SPV=0.10733;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,6:4,2:6,4 +chr8 73948192 . C CA 0 PASS DP=64;GPV=1;SPV=0.011503;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,15:18,8:10,7 +chr8 75626547 . C G 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:24,3:10,2 +chr8 75736176 . T C 0 PASS DP=67;GPV=1;SPV=0.00032719;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:12,12:16,5 +chr8 78349627 . C CATAT 0 PASS DP=21;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2 +chr8 78669967 . C CT 0 PASS DP=35;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,7:11,2 +chr8 78687702 . TTA T 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,2:9,2 +chr8 80545556 . C CTT 0 PASS DP=24;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,4:4,2 +chr8 81874625 . A T 0 PASS DP=42;GPV=1;SPV=0.049588;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3 +chr8 82014490 . CGT C 0 PASS DP=62;GPV=1;SPV=0.0014483;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:11,9:16,13 +chr8 82551753 . G A 0 PASS DP=32;GPV=1;SPV=0.020486;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,2:6,4 +chr8 83145260 . G GTATATA 0 PASS DP=40;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,7:3,2 +chr8 85043384 . G A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr8 85144402 . ATGTGTGTGTG A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr8 85647304 . T C 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0 +chr8 85653372 . A T 0 PASS DP=309;GPV=1;SPV=0.047615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:176:158,18:78,7:80,11 +chr8 85805041 . G C 0 PASS DP=96;GPV=1;SPV=0.011546;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:7,3:32,11 +chr8 86799977 . G A 0 PASS DP=61;GPV=1;SPV=0.00022484;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:14,3:8,10 +chr8 88701671 . C G 0 PASS DP=37;GPV=1;SPV=0.1982;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:9,1:10,2 +chr8 89552310 . TTTTTA T 0 PASS DP=61;GPV=1;SPV=0.02678;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:9,6:16,6 +chr8 89836577 . T G 0 PASS DP=62;GPV=1;SPV=0.0092864;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,7:3,3:10,4 +chr8 91576225 . T C 0 PASS DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,4:13,5 +chr8 92496832 . C CTATATATATATATATATATA 0 PASS DP=20;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,3:0,1 +chr8 92704790 . G T 0 PASS DP=58;GPV=1;SPV=0.01467;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,2:12,4 +chr8 94060351 . C CT 0 PASS DP=59;GPV=1;SPV=0.018659;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,14:11,11:12,3 +chr8 94664120 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr8 96216225 . TGAGAGAGAGAGAGA T 0 PASS DP=29;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:2,3:1,6 +chr8 96651281 . G A 0 PASS DP=70;GPV=1;SPV=1.9551e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,5:10,8 +chr8 97001721 . CTT C 0 PASS DP=25;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2 +chr8 97123023 . A T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,3:9,1 +chr8 97782279 . CT C 0 PASS DP=23;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:2,4:4,1 +chr8 98306340 . TG T 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:11,6:13,2 +chr8 98306342 . T C 0 PASS DP=58;GPV=1;SPV=0.0006486;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,7:9,2 +chr8 98731722 . CA C 0 PASS DP=37;GPV=1;SPV=0.01905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2 +chr8 99029062 . G A 0 PASS DP=48;GPV=1;SPV=0.0013028;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:9,12:6,3 +chr8 99391587 . C A 0 PASS DP=69;GPV=1;SPV=9.8221e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:10,7:11,8 +chr8 99693010 . C T 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr8 99906834 . TTTTC T 0 PASS DP=52;GPV=1;SPV=0.00034333;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:8,8:7,7 +chr8 100453390 . A G 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr8 100799021 . GGTTCTGGA G 0 PASS DP=62;GPV=1;SPV=0.00038629;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,3:14,9 +chr8 100799032 . ATGAGTT A 0 PASS DP=53;GPV=1;SPV=0.00017105;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,2:9,9 +chr8 100799042 . A T 0 PASS DP=60;GPV=1;SPV=1.2423e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,3:10,9 +chr8 100799043 . G T 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,3:12,8 +chr8 101092767 . C CCTTT 0 PASS DP=34;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:3,1:12,9 +chr8 101350381 . G A 0 PASS DP=68;GPV=1;SPV=0.00011331;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:13,8:13,8 +chr8 101350382 . A T 0 PASS DP=68;GPV=1;SPV=0.00022241;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:14,6:13,9 +chr8 101435075 . A C 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,3:18,3 +chr8 101592100 . C CT 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:3,7:0,1 +chr8 104730453 . T TGAGAGAGAGAGAGAGA 0 PASS DP=29;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:3,2:5,3 +chr8 104820449 . C T 0 PASS DP=43;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,6:12,5:3,1 +chr8 106607793 . CTTTCTT C 0 PASS DP=36;GPV=1;SPV=0.1182;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3 +chr8 107370340 . A AAG 0 PASS DP=26;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,4:1,3:0,1 +chr8 108921397 . C T 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,2:17,2 +chr8 109828580 . G T 0 PASS DP=63;GPV=1;SPV=4.6321e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,10:9,5 +chr8 109901978 . A G 0 PASS DP=64;GPV=1;SPV=0.01619;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:13,5:20,4 +chr8 110283401 . A G 0 PASS DP=52;GPV=1;SPV=0.0044741;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:3,2:11,3 +chr8 111126098 . TCTTTCTTTC T 0 PASS DP=30;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,2:1,1:2,1 +chr8 112410676 . G GTA 0 PASS DP=38;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:9,3:9,2 +chr8 112697054 . G A 0 PASS DP=61;GPV=1;SPV=0.0007924;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:8,10:7,4 +chr8 113683904 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,8:6,3 +chr8 114237562 . C T 0 PASS DP=71;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,5:8,4:12,1 +chr8 115900857 . T A 0 PASS DP=46;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:0,0:4,2 +chr8 116365598 . GAGAAAGAAAGAA G 0 PASS DP=36;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:16,3:0,1 +chr8 116448122 . TTG T 0 PASS DP=51;GPV=1;SPV=0.021522;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,7:14,5 +chr8 117221960 . G T 0 PASS DP=71;GPV=1;SPV=0.032384;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2 +chr8 117221961 . G T 0 PASS DP=73;GPV=1;SPV=0.037595;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,2:12,2 +chr8 117565353 . T A 0 PASS DP=78;GPV=1;SPV=3.7597e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:15,6:14,10 +chr8 118880173 . TTTTGG T 0 PASS DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,4:9,2 +chr8 120735001 . G C 0 PASS DP=59;GPV=1;SPV=1.418e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:10,8:7,7 +chr8 120910420 . CAAA C 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr8 121157153 . CA C 0 PASS DP=68;GPV=1;SPV=0.035018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:12,7:21,3 +chr8 122591841 . TATC T 0 PASS DP=66;GPV=1;SPV=0.11412;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,3:16,1 +chr8 122633191 . C G 0 PASS DP=66;GPV=1;SPV=0.003361;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,5:12,4 +chr8 122959716 . T C 0 PASS DP=63;GPV=1;SPV=0.00094257;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:11,8:16,6 +chr8 123412602 . A AT 0 PASS DP=52;GPV=1;SPV=0.0077776;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:8,4:14,4 +chr8 123918684 . C T 0 PASS DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,13:3,2 +chr8 124302728 . TTC T 0 PASS DP=64;GPV=1;SPV=0.01289;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1 +chr8 124916973 . TC T 0 PASS DP=47;GPV=1;SPV=0.35142;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,1:22,3 +chr8 125349584 . A T 0 PASS DP=56;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:1,2:0,1:1,1 +chr8 126143332 . C A 0 PASS DP=34;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,3:8,1 +chr8 127175345 . TA T 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:20,2:8,2 +chr8 127175347 . C G 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,2:11,2 +chr8 129304758 . C A 0 PASS DP=71;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:0,3:0,1:0,2 +chr8 130573544 . ATCTCTCTCTC A 0 PASS DP=36;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:5,1:13,3 +chr8 130801899 . C CTT 0 PASS DP=26;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:2,5:4,4 +chr8 131216346 . T TATAC 0 PASS DP=31;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:4,6:3,1 +chr8 131377543 . A G 0 PASS DP=59;GPV=1;SPV=0.05558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,2:14,3 +chr8 131639936 . T C 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr8 132542395 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,7:2,1 +chr8 132549534 . GA G 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1 +chr8 133214049 . TAG T 0 PASS DP=90;GPV=1;SPV=0.029399;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,12:11,5:18,7 +chr8 134243262 . AAG A 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2 +chr8 135536997 . AGG A 0 PASS DP=24;GPV=1;SPV=0.32353;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:2,3:7,2 +chr8 135691995 . T G 0 PASS DP=54;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,4:11,2:6,2 +chr8 136228066 . G A 0 PASS DP=65;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:6,3:1,1:5,2 +chr8 136781865 . AAAAG A 0 PASS DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,3:6,2 +chr8 136991676 . CTATA C 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,4:4,1 +chr8 137234263 . CTT C 0 PASS DP=20;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:6,3:0,1 +chr8 137351941 . G T 0 PASS DP=65;GPV=1;SPV=3.548e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,10:7,8 +chr8 138488114 . C T 0 PASS DP=70;GPV=1;SPV=0.00012009;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,6:13,8 +chr8 138692238 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,1:5,3 +chr8 139390447 . A AAT 0 PASS DP=26;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,3:3,2 +chr8 139947894 . G GTGTGTATATATATATATA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:3,1:7,3 +chr8 141955871 . T C 0 PASS DP=52;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,4:13,2:6,2 +chr8 142017388 . G T 0 PASS DP=42;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:9,2:10,2 +chr8 142184794 . G C 0 PASS DP=60;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:16,3:20,3 +chr8 142509099 . G A 0 PASS DP=88;GPV=1;SPV=3.791e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,21:13,12:11,9 +chr8 142857811 . T G 0 PASS DP=58;GPV=1;SPV=0.014457;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,10:14,3 +chr8 143054303 . C CA 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1 +chr8 143307170 . C CAGAGA 0 PASS DP=43;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:7,2:9,2 +chr8 143492777 . G C 0 PASS DP=37;GPV=1;SPV=0.097509;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:6,2:13,3 +chr8 143981349 . A G 0 PASS DP=48;GPV=1;SPV=0.02087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,6:0,3:6,3 +chr8 144558818 . A T 0 PASS DP=43;GPV=1;SPV=0.0036228;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:10,8:6,1 +chr8 144769254 . A C 0 PASS DP=32;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:5,1:1,1 +chr9 17614 . CT C 0 PASS DP=45;GPV=1;SPV=0.064412;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,1:9,7 +chr9 135690 . A G 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr9 150120 . TG T 0 PASS DP=24;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,2:5,3 +chr9 610712 . G C 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:11,7:15,7 +chr9 631009 . A C 0 PASS DP=54;GPV=1;SPV=2.3898e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:10,7:5,7 +chr9 883627 . C CA 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr9 1006623 . C CT 0 PASS DP=41;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:7,3:8,6 +chr9 1475189 . A ATTTATTTATTTATTTATTATTTATTTATTTTT 0 PASS DP=56;GPV=1;SPV=0.058083;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,7:10,4:18,3 +chr9 2492304 . C CAAAATAAAATAAAATAAAAT 0 PASS DP=51;GPV=1;SPV=0.050318;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:10,3:16,3 +chr9 3414735 . T TGA 0 PASS DP=60;GPV=1;SPV=0.040297;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,4:14,4 +chr9 3499438 . T A 0 PASS DP=67;GPV=1;SPV=0.0014416;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,7:14,6 +chr9 4867760 . C G 0 PASS DP=59;GPV=1;SPV=3.0166e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,6:10,8 +chr9 6627295 . CAA C 0 PASS DP=48;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:12,4:4,2 +chr9 8279044 . T G 0 PASS DP=71;GPV=1;SPV=0.00058098;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:13,11:19,7 +chr9 8678373 . T A 0 PASS DP=62;GPV=1;SPV=0.00091926;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,5:10,3 +chr9 9398814 . G A 0 PASS DP=72;GPV=1;SPV=0.0033001;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:15,6:13,12 +chr9 9533471 . T A 0 PASS DP=74;GPV=1;SPV=8.3077e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:18,8:10,7 +chr9 10479652 . A C 0 PASS DP=53;GPV=1;SPV=0.048435;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,7:13,4:9,3 +chr9 10654810 . CTT C 0 PASS DP=30;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,2:3,2 +chr9 11277229 . C T 0 PASS DP=91;GPV=1;SPV=2.5613e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:15,11:13,9 +chr9 12477748 . G A 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,1:17,3 +chr9 12644557 . AT A 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,3:14,1 +chr9 12888967 . C A 0 PASS DP=78;GPV=1;SPV=0.00018187;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:16,5:13,7 +chr9 13245425 . AAG A 0 PASS DP=54;GPV=1;SPV=0.11371;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2 +chr9 14099964 . C A 0 PASS DP=73;GPV=1;SPV=0.0048945;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:19,8:17,3 +chr9 15420424 . C A 0 PASS DP=41;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,5:2,3:1,2 +chr9 15490682 . CA C 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:8,8:3,1 +chr9 15565387 . T G 0 PASS DP=76;GPV=1;SPV=7.6915e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:17,11:11,3 +chr9 15847796 . A T 0 PASS DP=71;GPV=1;SPV=0.00065457;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,4:12,7 +chr9 16780235 . C CAA 0 PASS DP=28;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:6,9:2,1 +chr9 17035051 . CT C 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr9 17554265 . C T 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,3:1,3 +chr9 18249138 . A G 0 PASS DP=66;GPV=1;SPV=0.00058845;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:10,4:17,9 +chr9 19642986 . CTT C 0 PASS DP=36;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,10:3,8:3,2 +chr9 19690937 . C G 0 PASS DP=68;GPV=1;SPV=0.1773;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,5:23,4:20,1 +chr9 19823297 . TTG T 0 PASS DP=46;GPV=1;SPV=0.0026316;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,16:4,9:2,7 +chr9 20778089 . CAAAAAA C 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,6:6,2 +chr9 20839206 . ATAAGGTT A 0 PASS DP=56;GPV=1;SPV=0.074614;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,1:7,3 +chr9 21070864 . C T 0 PASS DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3 +chr9 23136393 . G GTTT 0 PASS DP=25;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:6,1:2,3 +chr9 25239131 . T G 0 PASS DP=55;GPV=1;SPV=0.0010863;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3 +chr9 25786660 . GTATATATGTGTGTA G 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,4:2,5 +chr9 25786672 . GTA G 0 PASS DP=21;GPV=1;SPV=0.0079365;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,4:0,3:0,1 +chr9 25788984 . T A 0 PASS DP=55;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,0:0,2 +chr9 26376144 . AAATAAT A 0 PASS DP=55;GPV=1;SPV=0.0044832;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5 +chr9 28285398 . A AT 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,5:3,7 +chr9 28509694 . G A 0 PASS DP=52;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,4:8,2 +chr9 29476648 . C T 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,2:16,2 +chr9 29935284 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:0,6:2,1 +chr9 32450961 . T TATCA 0 PASS DP=51;GPV=1;SPV=0.01362;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:6,4:10,8 +chr9 33895768 . C T 0 PASS DP=21;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,6:1,2:1,4 +chr9 34210733 . A T 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:5,2:20,2 +chr9 34756282 . AG A 0 PASS DP=40;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,1:9,8 +chr9 35767283 . G GT 0 PASS DP=32;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:3,5:3,3 +chr9 36311553 . CTTTCT C 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,6:7,4 +chr9 37074509 . C CAT 0 PASS DP=29;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:6,3:6,1 +chr9 38719064 . C T 0 PASS DP=55;GPV=1;SPV=0.00078693;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:9,8:13,7 +chr9 38802021 . AT A 0 PASS DP=79;GPV=1;SPV=0.033452;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,4:12,7 +chr9 38822788 . A AAATATAT 0 PASS DP=27;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,10:2,6:0,4 +chr9 38889913 . A AGTGT 0 PASS DP=81;GPV=1;SPV=0.024807;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:17,9:9,4:8,5 +chr9 38899476 . C T 0 PASS DP=53;GPV=1;SPV=0.070703;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,2:12,4 +chr9 38979322 . C A 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:1,1:24,4 +chr9 39013532 . TCTTGG T 0 PASS DP=112;GPV=1;SPV=0.022332;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:55,18:23,4:32,14 +chr9 39556183 . G A 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr9 39606028 . C T 0 PASS DP=56;GPV=1;SPV=0.05999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,5:11,1 +chr9 40107877 . C A 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3 +chr9 40345499 . A T 0 PASS DP=39;GPV=1;SPV=0.0096036;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:10,9:3,3 +chr9 40388287 . C G 0 PASS DP=49;GPV=1;SPV=0.0092175;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,7:9,6 +chr9 40565850 . C G 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,1:2,5 +chr9 40705936 . A T 0 PASS DP=67;GPV=1;SPV=0.0366;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,2:14,5 +chr9 40721859 . T C 0 PASS DP=65;GPV=1;SPV=0.028729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:19,4:16,4 +chr9 40932869 . AAAAAAAAAAAAAACAAAAC A 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2 +chr9 40948837 . C T 0 PASS DP=190;GPV=1;SPV=0.0032124;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:83,24:45,13:38,11 +chr9 40956565 . G A 0 PASS DP=145;GPV=1;SPV=0.007587;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:77,9:32,1:45,8 +chr9 40996359 . C G 0 PASS DP=290;GPV=1;SPV=0.014283;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:151,24:53,7:98,17 +chr9 41057672 . C T 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,1:6,3 +chr9 41140582 . T C 0 PASS DP=34;GPV=1;SPV=0.011208;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,3:7,5 +chr9 41249409 . G GAA 0 PASS DP=94;GPV=1;SPV=0.0044113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,12:16,7:14,5 +chr9 41296023 . G A 0 PASS DP=152;GPV=1;SPV=0.041703;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:26,4:45,5 +chr9 41299045 . A C 0 PASS DP=196;GPV=1;SPV=0.04204;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:88,18:39,3:49,15 +chr9 41374611 . A G 0 PASS DP=63;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,1:13,7 +chr9 41442897 . C G 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1 +chr9 41654836 . G T 0 PASS DP=66;GPV=1;SPV=0.039649;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:15,3:9,7 +chr9 41781351 . G A 0 PASS DP=59;GPV=1;SPV=0.045726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:9,1:16,6 +chr9 41805818 . G A 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr9 41931650 . T G 0 PASS DP=91;GPV=1;SPV=0.016221;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:41,19:26,9:15,10 +chr9 42395473 . C G 0 PASS DP=125;GPV=1;SPV=0.040321;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:53,10:29,2:24,8 +chr9 42401563 . C G 0 PASS DP=89;GPV=1;SPV=0.03885;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:15,2:29,11 +chr9 42402845 . C A 0 PASS DP=123;GPV=1;SPV=0.039337;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:34,15:21,2 +chr9 42405150 . A AC 0 PASS DP=126;GPV=1;SPV=0.021276;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,15:20,9:28,6 +chr9 42439163 . C A 0 PASS DP=67;GPV=1;SPV=0.012793;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:11,5:16,4 +chr9 42853307 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,3:2,3 +chr9 43001066 . A G 0 PASS DP=222;GPV=1;SPV=0.021814;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:110,25:68,16:42,9 +chr9 43036676 . G A 0 PASS DP=61;GPV=1;SPV=0.046772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:17,3:12,2 +chr9 43757652 . A T 0 PASS DP=255;GPV=1;SPV=0.0050999;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:129,32:41,16:88,16 +chr9 44100356 . A G 0 PASS DP=145;GPV=1;SPV=0.0021853;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:69,23:17,5:52,18 +chr9 44146623 . G C 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr9 44629853 . A C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr9 44695983 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr9 44945238 . T A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,1:5,5 +chr9 45075668 . C T 0 PASS DP=68;GPV=1;SPV=0.090639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:34,4:0,0 +chr9 45188123 . C G 0 PASS DP=152;GPV=1;SPV=0.025746;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:77,12:70,8:7,4 +chr9 61214167 . A G 0 PASS DP=96;GPV=1;SPV=0.033582;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:21,5:17,3 +chr9 61562470 . C A 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,3:8,2 +chr9 61562505 . G GAA 0 PASS DP=45;GPV=1;SPV=0.0019167;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,9:4,2 +chr9 61793845 . G A 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3 +chr9 61814971 . C T 0 PASS DP=38;GPV=1;SPV=0.011236;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:3,4:13,6 +chr9 62717344 . T C 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,6:3,1 +chr9 62814849 . G T 0 PASS DP=240;GPV=1;SPV=0.014437;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:96,20:45,9:51,11 +chr9 62822122 . TAC T 0 PASS DP=169;GPV=1;SPV=0.014311;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:34,6:51,4 +chr9 62833027 . T C 0 PASS DP=41;GPV=1;SPV=0.00079103;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:11,7:0,1 +chr9 62833039 . C T 0 PASS DP=38;GPV=1;SPV=0.021122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:11,6:1,1 +chr9 62848844 . T C 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,5:10,1 +chr9 62848863 . G A 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,5:9,1 +chr9 62866765 . CTACT C 0 PASS DP=202;GPV=1;SPV=0.034526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:96,16:54,12:42,4 +chr9 62884140 . A G 0 PASS DP=129;GPV=1;SPV=0.0031077;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:50,17:30,10:20,7 +chr9 62923168 . A G 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,3:6,3 +chr9 62925388 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr9 63433982 . G A 0 PASS DP=58;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:20,1:13,3 +chr9 63646962 . G A 0 PASS DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,2:14,2 +chr9 63710394 . G A 0 PASS DP=82;GPV=1;SPV=0.039935;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:20,5:23,1 +chr9 63710417 . GAA G 0 PASS DP=69;GPV=1;SPV=0.013018;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:17,5:14,2 +chr9 63719863 . G A 0 PASS DP=80;GPV=1;SPV=0.067749;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:30,4:16,2 +chr9 63737243 . C G 0 PASS DP=120;GPV=1;SPV=0.014912;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:30,8:23,6 +chr9 63764708 . G T 0 PASS DP=268;GPV=1;SPV=0.044983;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:120,18:65,11:55,7 +chr9 63796180 . C G 0 PASS DP=199;GPV=1;SPV=0.026718;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:101,20:66,17:35,3 +chr9 63868747 . G A 0 PASS DP=164;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:71,15:25,7:46,8 +chr9 63888826 . AT A 0 PASS DP=109;GPV=1;SPV=0.0092268;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,14:25,9:25,5 +chr9 63888832 . AT A 0 PASS DP=105;GPV=1;SPV=0.030182;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:43,14:22,9:21,5 +chr9 63996274 . T A 0 PASS DP=81;GPV=1;SPV=0.042222;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:20,6:24,6 +chr9 64079341 . TA T 0 PASS DP=91;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:28,8:16,6 +chr9 64416952 . C T 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,5:2,4 +chr9 64724762 . CGATGAGATGAAATGAAAG C 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,3:13,1 +chr9 65577304 . A T 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:20,2:22,4 +chr9 65657817 . G A 0 PASS DP=176;GPV=1;SPV=0.0021668;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:89,24:56,13:33,11 +chr9 65661656 . T G 0 PASS DP=95;GPV=1;SPV=0.017969;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:24,4:12,7 +chr9 65705007 . T A 0 PASS DP=72;GPV=1;SPV=0.033332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:16,6:14,1 +chr9 65705611 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3 +chr9 65705808 . A G 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr9 65711220 . C G 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,1:12,5 +chr9 65718033 . G C 0 PASS DP=46;GPV=1;SPV=0.0031863;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,3:7,4 +chr9 65727083 . C G 0 PASS DP=58;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,7:10,2 +chr9 65737116 . A G 0 PASS DP=121;GPV=1;SPV=0.00071876;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:51,18:28,12:23,6 +chr9 65737280 . G A 0 PASS DP=170;GPV=1;SPV=0.0016525;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:40,5:44,14 +chr9 65938797 . A G 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,5:6,1 +chr9 66013526 . A G 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr9 66030237 . C CT 0 PASS DP=62;GPV=1;SPV=0.039894;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,5:5,3:23,2 +chr9 66036762 . A G 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,1:16,5 +chr9 66066173 . T C 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:0,1:12,5 +chr9 66182996 . T C 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3 +chr9 66701874 . T G 0 PASS DP=78;GPV=1;SPV=0.081109;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:14,4:29,1 +chr9 66736184 . C A 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr9 66784006 . TTTTCA T 0 PASS DP=99;GPV=1;SPV=0.043181;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:29,6:19,5 +chr9 66972569 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr9 67016723 . C A 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:9,4:14,1 +chr9 67052196 . C T 0 PASS DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,4:4,5 +chr9 67093077 . A G 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,3:9,1 +chr9 67718107 . G C 0 PASS DP=58;GPV=1;SPV=0.041156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,2:14,5 +chr9 67768365 . T C 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:2,9:7,3 +chr9 67795173 . A G 0 PASS DP=116;GPV=1;SPV=0.011526;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:52,10:7,2 +chr9 67795720 . C T 0 PASS DP=120;GPV=1;SPV=0.019038;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:30,2:27,7 +chr9 67799872 . T A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr9 67834210 . A G 0 PASS DP=34;GPV=1;SPV=0.0059543;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:9,4:1,2 +chr9 67908450 . G A 0 PASS DP=66;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,1:18,4 +chr9 68228213 . T C 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:4,3:17,1 +chr9 68229021 . G A 0 PASS DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,4:4,3 +chr9 68251080 . TAA T 0 PASS DP=29;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:4,7:1,4 +chr9 68327930 . A T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr9 68340716 . G A 0 PASS DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,2:15,2 +chr9 71421732 . C A 0 PASS DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,6:11,4 +chr9 71504898 . G A 0 PASS DP=79;GPV=1;SPV=0.029196;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,1:16,4 +chr9 71896705 . T C 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,3:13,1 +chr9 72009559 . C CAAAA 0 PASS DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:6,3:6,1 +chr9 73341705 . G C 0 PASS DP=68;GPV=1;SPV=8.4162e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,7:12,4 +chr9 73515622 . A T 0 PASS DP=77;GPV=1;SPV=5.9884e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:15,9:16,10 +chr9 74045713 . C T 0 PASS DP=49;GPV=1;SPV=0.47009;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,3:15,2:4,1 +chr9 74346766 . G A 0 PASS DP=55;GPV=1;SPV=0.06964;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,3:17,1 +chr9 75534913 . CA C 0 PASS DP=37;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,8:6,1 +chr9 76246341 . CA C 0 PASS DP=29;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,5:5,1 +chr9 76670533 . ACTGGGTGGAGCC A 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:7,8:18,6 +chr9 76991341 . C CA 0 PASS DP=33;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:2,5:7,3 +chr9 77828982 . A T 0 PASS DP=63;GPV=1;SPV=0.00031429;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,9:8,2 +chr9 78299496 . C CT 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,7:3,1 +chr9 78445867 . C CT 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr9 78873962 . A G 0 PASS DP=60;GPV=1;SPV=0.15137;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:26,1:8,3 +chr9 79100925 . T G 0 PASS DP=58;GPV=1;SPV=0.00010916;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:7,5:13,10 +chr9 79855857 . C CAA 0 PASS DP=34;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,5:6,1 +chr9 80543668 . T TG 0 PASS DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,5:4,4 +chr9 80635888 . T C 0 PASS DP=45;GPV=1;SPV=0.0037889;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:5,14:8,8 +chr9 81711106 . C A 0 PASS DP=47;GPV=1;SPV=0.03707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:5,5:13,2 +chr9 82017416 . C T 0 PASS DP=35;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,5:5,4:5,1 +chr9 82069960 . C CTT 0 PASS DP=31;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,7:2,1 +chr9 82245858 . C A 0 PASS DP=64;GPV=1;SPV=0.00056109;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,6:12,5 +chr9 82426748 . T G 0 PASS DP=50;GPV=1;SPV=0.012882;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,7:5,1:4,6 +chr9 82850318 . G GA 0 PASS DP=47;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:0,4:0,4:0,0 +chr9 83144395 . A G 0 PASS DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:19,3:9,2 +chr9 83207598 . CT C 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2 +chr9 83283546 . A T 0 PASS DP=57;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,5:1,4:2,1 +chr9 84079103 . T G 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2 +chr9 84833223 . T C 0 PASS DP=42;GPV=1;SPV=0.00042668;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:7,12:3,6 +chr9 85504896 . CT C 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr9 86039133 . A G 0 PASS DP=73;GPV=1;SPV=0.0012814;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,7:13,2 +chr9 86535101 . TCTTCCCTTCCCTTCC T 0 PASS DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,1:6,4 +chr9 87097720 . T TC 0 PASS DP=38;GPV=1;SPV=0.22547;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,3:9,2 +chr9 87260584 . C CA 0 PASS DP=49;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,8:6,7:6,1 +chr9 87435688 . C T 0 PASS DP=81;GPV=1;SPV=7.7888e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:11,6:15,9 +chr9 87684571 . C G 0 PASS DP=98;GPV=1;SPV=2.7845e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:32,32:16,14:16,18 +chr9 87853662 . A AGATCCTATAG 0 PASS DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,3:12,7 +chr9 88493746 . C CA 0 PASS DP=48;GPV=1;SPV=0.016238;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:10,6:4,1 +chr9 88935927 . AATATATATAT A 0 PASS DP=38;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,10:4,7:2,3 +chr9 89205267 . G GCA 0 PASS DP=25;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,4:3,1 +chr9 89450665 . A G 0 PASS DP=22;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:3,2:1,1 +chr9 89707561 . T C 0 PASS DP=37;GPV=1;SPV=0.009628;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:4,1:6,9 +chr9 89749664 . G GCACA 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,3:8,2 +chr9 90324141 . C CTT 0 PASS DP=31;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,9:0,8:4,1 +chr9 90418116 . AC A 0 PASS DP=49;GPV=1;SPV=0.0038805;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:4,2:11,4 +chr9 91147616 . C T 0 PASS DP=53;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,5:2,1:5,4 +chr9 91786928 . G GA 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:10,5:13,12 +chr9 92033194 . G A 0 PASS DP=64;GPV=1;SPV=1.57e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:12,5:6,8 +chr9 92201546 . G C 0 PASS DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,3:2,6 +chr9 93828680 . C A 0 PASS DP=65;GPV=1;SPV=0.00087744;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:15,1:8,8 +chr9 95304749 . CA C 0 PASS DP=35;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1 +chr9 95740046 . G C 0 PASS DP=77;GPV=1;SPV=2.1631e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:9,10:15,8 +chr9 97330066 . C CA 0 PASS DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:5,7:9,1 +chr9 97990814 . CT C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2 +chr9 98392958 . C CA 0 PASS DP=53;GPV=1;SPV=0.02607;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,4:1,0:10,4 +chr9 98579949 . G C 0 PASS DP=78;GPV=1;SPV=0.00037569;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:15,2:13,8 +chr9 98648116 . T TGTGTGTGTGTGTGTATAG 0 PASS DP=27;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:4,2:0,4 +chr9 99360131 . T G 0 PASS DP=58;GPV=1;SPV=0.037081;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,4:15,1 +chr9 101075382 . C A 0 PASS DP=82;GPV=1;SPV=2.7776e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,7:9,7 +chr9 101477235 . A C 0 PASS DP=55;GPV=1;SPV=0.040965;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,4:9,1 +chr9 101573773 . AT A 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,4:6,3 +chr9 101866531 . GTT G 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,4:5,2 +chr9 101900231 . C G 0 PASS DP=72;GPV=1;SPV=0.00011455;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:17,10:9,3 +chr9 102220760 . C T 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,3:10,2 +chr9 102220778 . A G 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2 +chr9 103532079 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:2,5:1,2 +chr9 104575448 . G T 0 PASS DP=56;GPV=1;SPV=0.0019214;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5 +chr9 104633168 . CT C 0 PASS DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,3:0,1 +chr9 105162032 . C CA 0 PASS DP=41;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:4,3:5,3 +chr9 107242343 . G A 0 PASS DP=35;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:8,3:2,1 +chr9 107346304 . G GTC 0 PASS DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,6:6,2 +chr9 107561912 . CTT C 0 PASS DP=34;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:6,2:9,2 +chr9 108247879 . C T 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,1:7,3 +chr9 108280182 . C T 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,7:10,3 +chr9 108466081 . T C 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1 +chr9 108867211 . A T 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,5:6,1 +chr9 109041453 . A ATT 0 PASS DP=30;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1 +chr9 110058902 . T G 0 PASS DP=52;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,3:14,2 +chr9 110422900 . C T 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,7:4,1 +chr9 110981784 . G C 0 PASS DP=57;GPV=1;SPV=0.013828;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:10,3:18,6 +chr9 111210068 . G A 0 PASS DP=75;GPV=1;SPV=2.7821e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,6:14,9 +chr9 111641635 . A G 0 PASS DP=40;GPV=1;SPV=0.046847;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,2:4,4 +chr9 111907628 . C CTT 0 PASS DP=41;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,4:13,3:8,1 +chr9 111943556 . C CTTT 0 PASS DP=18;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:0,3:2,2 +chr9 112017294 . CA C 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,3:12,1 +chr9 112017298 . T C 0 PASS DP=36;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,3:0,2:0,1 +chr9 112277931 . C T 0 PASS DP=45;GPV=1;SPV=0.01027;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,5:6,5 +chr9 112340893 . TA T 0 PASS DP=65;GPV=1;SPV=0.20119;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,5:20,1:22,4 +chr9 112784205 . C T 0 PASS DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:11,4:16,3 +chr9 112784207 . CCTAGGT C 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,2:15,2 +chr9 113062716 . A G 0 PASS DP=46;GPV=1;SPV=0.12395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,1:10,4 +chr9 115437923 . A AACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:5,8:6,4 +chr9 115818885 . T A 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4 +chr9 116816896 . A AAAATAAATAAATAAAT 0 PASS DP=42;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,9:3,4:3,5 +chr9 116839857 . T TA 0 PASS DP=50;GPV=1;SPV=0.059705;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:5,1:16,3 +chr9 116925869 . C A 0 PASS DP=64;GPV=1;SPV=0.051196;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:13,4:21,2 +chr9 117997237 . T TTCCTCC 0 PASS DP=48;GPV=1;SPV=0.036744;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,7:9,5:12,2 +chr9 118333571 . TGAC T 0 PASS DP=67;GPV=1;SPV=0.22942;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,4:17,1:12,3 +chr9 118707387 . T TTCTCTTTCTTTCTTTGTTGCTTTC 0 PASS DP=39;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:8,1:7,3 +chr9 119021985 . T G 0 PASS DP=60;GPV=1;SPV=1.4732e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:5,10:13,6 +chr9 120781679 . C T 0 PASS DP=61;GPV=1;SPV=0.035079;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:16,3:14,3 +chr9 121493284 . G A 0 PASS DP=53;GPV=1;SPV=0.0002735;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:12,9:7,7 +chr9 123248261 . G GT 0 PASS DP=31;GPV=1;SPV=0.034921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:7,2:2,2 +chr9 123917179 . G A 0 PASS DP=65;GPV=1;SPV=0.009659;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,3:13,4 +chr9 124779546 . GT G 0 PASS DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr9 124784943 . GTTTT G 0 PASS DP=32;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:11,2:5,2 +chr9 126626846 . C T 0 PASS DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,6:10,6 +chr9 127552684 . G GTT 0 PASS DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1 +chr9 128528003 . C CT 0 PASS DP=17;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1 +chr9 129262777 . G T 0 PASS DP=60;GPV=1;SPV=2.6013e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,3:7,7 +chr9 129442360 . C CA 0 PASS DP=35;GPV=1;SPV=0.001409;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:7,7:3,3 +chr9 130310435 . C G 0 PASS DP=90;GPV=1;SPV=0.025523;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,3:22,3 +chr9 130550336 . C CAAAA 0 PASS DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,8:4,1 +chr9 130603369 . C G 0 PASS DP=26;GPV=1;SPV=0.12981;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,3:6,2 +chr9 130819853 . C CT 0 PASS DP=43;GPV=1;SPV=0.018157;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,13:8,6:8,7 +chr9 131303479 . C T 0 PASS DP=51;GPV=1;SPV=0.0067406;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4 +chr9 131426337 . CAAAAA C 0 PASS DP=30;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,7:2,6:2,1 +chr9 132302681 . CAA C 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2 +chr9 132313931 . T G 0 PASS DP=81;GPV=1;SPV=0.05832;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:23,6:9,3:14,3 +chr9 132953176 . T G 0 PASS DP=63;GPV=1;SPV=0.052823;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,2:14,2 +chr9 134093564 . A G 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1 +chr9 134104174 . C T 0 PASS DP=18;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,2:3,4 +chr9 134527759 . C CAAAAAA 0 PASS DP=33;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,9:6,1 +chr9 134685055 . A AT 0 PASS DP=33;GPV=1;SPV=0.048943;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,3:5,2:4,1 +chr9 134685504 . CCAT C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3 +chr9 135860597 . C CA 0 PASS DP=38;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,11:6,8:2,3 +chr9 136248222 . C T 0 PASS DP=83;GPV=1;SPV=0.00018501;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,10:17,5 +chr9 136293425 . T TCACA 0 PASS DP=45;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,6:5,3 +chr9 136636348 . A G 0 PASS DP=50;GPV=1;SPV=6.7038e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,4:7,5 +chr9 136960671 . C T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 137103150 . C A 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,1:12,3 +chr9 137780384 . C T 0 PASS DP=20;GPV=1;SPV=0.19298;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:9,3:5,1:4,2 +chr9 138141015 . C G 0 PASS DP=100;GPV=1;SPV=0.0044922;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:26,13:19,4 +chr9 138182033 . T C 0 PASS DP=81;GPV=1;SPV=0.048964;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,1:22,5 +chrX 2932406 . G T 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chrX 3315355 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chrX 3615011 . A ATT 0 PASS DP=35;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,8:8,7:4,1 +chrX 3653858 . A T 0 PASS DP=47;GPV=1;SPV=0.027709;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2 +chrX 3681657 . A T 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chrX 3830389 . C T 0 PASS DP=24;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,1:2,3 +chrX 4067356 . CTTTCT C 0 PASS DP=24;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:2,1:6,3 +chrX 4207330 . G A 0 PASS DP=42;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:3,2:3,1 +chrX 4465393 . AAAAG A 0 PASS DP=24;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:2,5:1,3 +chrX 4852269 . TA T 0 PASS DP=47;GPV=1;SPV=0.02027;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,2:6,5 +chrX 5011194 . T TTTTCTTTCTTTCTTTCTTTC 0 PASS DP=36;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:4,1:8,3 +chrX 5941180 . G T 0 PASS DP=29;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:5,2:1,4 +chrX 6082951 . TTTTTC T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3 +chrX 8511868 . C CA 0 PASS DP=38;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:10,4:7,1 +chrX 9089555 . G GGA 0 PASS DP=38;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,6:4,3:6,3 +chrX 9523960 . CT C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,1:6,3 +chrX 9883121 . A T 0 PASS DP=53;GPV=1;SPV=0.020485;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,6:10,2 +chrX 10565003 . A T 0 PASS DP=59;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,4:1,1:3,3 +chrX 12776962 . G C 0 PASS DP=84;GPV=1;SPV=3.4552e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:20,9:11,6 +chrX 13610765 . C T 0 PASS DP=74;GPV=1;SPV=0.0010241;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:10,7:21,4 +chrX 14861346 . G A 0 PASS DP=74;GPV=1;SPV=1.7807e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,7:9,8 +chrX 15180071 . T TACACACACACAC 0 PASS DP=45;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,5:5,5 +chrX 15268331 . C CA 0 PASS DP=49;GPV=1;SPV=0.3882;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:8,3:27,1 +chrX 15776338 . C CA 0 PASS DP=39;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:13,9:1,2 +chrX 19106661 . G C 0 PASS DP=65;GPV=1;SPV=2.6849e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,5:8,10 +chrX 19522002 . T G 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:3,5:7,3 +chrX 19774648 . C CA 0 PASS DP=45;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:16,1:8,3 +chrX 19838902 . A G 0 PASS DP=45;GPV=1;SPV=0.0050177;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,2:7,6 +chrX 21950433 . CTTT C 0 PASS DP=44;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:14,6:4,7 +chrX 24047682 . G A 0 PASS DP=77;GPV=1;SPV=2.7628e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:11,3:15,11 +chrX 24452724 . GGAGGGAGATGCCAGAGTCTTTTTCACAAC G 0 PASS DP=58;GPV=1;SPV=0.048897;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,3:15,7 +chrX 25610112 . C A 0 PASS DP=61;GPV=1;SPV=0.0014541;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:5,3:19,7 +chrX 26320078 . CG C 0 PASS DP=33;GPV=1;SPV=0.01236;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:11,4:2,6 +chrX 26320081 . G GAT 0 PASS DP=33;GPV=1;SPV=0.0069862;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:10,4:2,6 +chrX 26919912 . T TTATATA 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:1,6:2,2 +chrX 29837300 . T C 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3 +chrX 30223696 . G T 0 PASS DP=67;GPV=1;SPV=0.00046753;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:14,9:11,2 +chrX 30553137 . G A 0 PASS DP=70;GPV=1;SPV=0.0019129;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:8,4:20,5 +chrX 30553139 . G A 0 PASS DP=73;GPV=1;SPV=0.016217;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:11,2:21,4 +chrX 30713440 . C A 0 PASS DP=64;GPV=1;SPV=0.00017018;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,3:6,6 +chrX 31022361 . C A 0 PASS DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,4:11,5 +chrX 31226184 . C T 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:11,10:14,9 +chrX 31370098 . C CA 0 PASS DP=31;GPV=1;SPV=0.00096843;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,11:2,9:2,2 +chrX 31716551 . C CAACAAAACAA 0 PASS DP=55;GPV=1;SPV=0.00059181;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,7:8,5 +chrX 32252877 . AAAATATATAT A 0 PASS DP=29;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,4:2,3 +chrX 32922208 . A G 0 PASS DP=77;GPV=1;SPV=0.00012796;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:6,6:20,5 +chrX 33026313 . CAAAAA C 0 PASS DP=29;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1 +chrX 33095964 . AT A 0 PASS DP=27;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:6,3:2,4 +chrX 33106053 . AC A 0 PASS DP=74;GPV=1;SPV=0.1099;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:25,4:21,2 +chrX 33130739 . C T 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:13,4:17,6 +chrX 33428810 . A AAT 0 PASS DP=68;GPV=1;SPV=0.0020896;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,15:8,5:14,10 +chrX 33921674 . G A 0 PASS DP=61;GPV=1;SPV=0.0040088;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,8:12,3 +chrX 34144127 . C T 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2 +chrX 34400870 . G GA 0 PASS DP=47;GPV=1;SPV=0.012303;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,12:11,8:6,4 +chrX 35521982 . TATAG T 0 PASS DP=59;GPV=1;SPV=0.00044065;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:8,9:8,6 +chrX 36560921 . TTTCC T 0 PASS DP=47;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:6,1:4,7 +chrX 36584400 . T C 0 PASS DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:6,1:6,3 +chrX 36591613 . T C 0 PASS DP=83;GPV=1;SPV=4.361e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:24,11:8,5 +chrX 36965370 . G C 0 PASS DP=71;GPV=1;SPV=0.0016717;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4 +chrX 40088412 . G C 0 PASS DP=68;GPV=1;SPV=7.1254e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:6,12:12,6 +chrX 41792237 . A C 0 PASS DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,4:17,3 +chrX 42959423 . CTT C 0 PASS DP=26;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:6,5:0,1 +chrX 43307955 . T C 0 PASS DP=39;GPV=1;SPV=0.10147;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4 +chrX 43423737 . AC A 0 PASS DP=42;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,8:7,2 +chrX 45334779 . AAATAT A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chrX 45334812 . AAATAT A 0 PASS DP=32;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3 +chrX 46395714 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,1:0,3 +chrX 46827562 . G A 0 PASS DP=34;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:4,3:5,1 +chrX 47358091 . CA C 0 PASS DP=36;GPV=1;SPV=0.10365;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:9,4:9,1 +chrX 50563508 . T G 0 PASS DP=43;GPV=1;SPV=0.013669;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3 +chrX 52009631 . A G 0 PASS DP=68;GPV=1;SPV=0.0010644;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:13,3:12,6 +chrX 52424863 . A G 0 PASS DP=56;GPV=1;SPV=0.0036826;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,7:13,3 +chrX 53012726 . A C 0 PASS DP=72;GPV=1;SPV=8.9762e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:12,7:6,8 +chrX 54708493 . G C 0 PASS DP=70;GPV=1;SPV=0.0014601;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:19,9:11,2 +chrX 55573678 . A T 0 PASS DP=69;GPV=1;SPV=0.00030714;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,8:14,4 +chrX 55864281 . TA T 0 PASS DP=35;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:3,7:1,1 +chrX 60212167 . T C 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chrX 63743217 . C CA 0 PASS DP=75;GPV=1;SPV=0.060731;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,1:14,3 +chrX 66337731 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1 +chrX 66589078 . TTG T 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,1:7,4 +chrX 68317559 . GAA G 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,2:3,3 +chrX 68383654 . G A 0 PASS DP=40;GPV=1;SPV=0.0013497;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,4:9,6 +chrX 68452429 . ATG A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,3:10,1 +chrX 68661970 . CTCTTTCTT C 0 PASS DP=40;GPV=1;SPV=0.041254;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:1,1:17,5 +chrX 70273422 . A C 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:11,5:14,4 +chrX 70296083 . C CTT 0 PASS DP=31;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2 +chrX 70349661 . T C 0 PASS DP=23;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:2,1:5,1 +chrX 70561388 . C CT 0 PASS DP=28;GPV=1;SPV=0.0063768;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,7:2,1 +chrX 72440800 . A C 0 PASS DP=87;GPV=1;SPV=9.7732e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:14,8:14,6 +chrX 75553778 . TACAC T 0 PASS DP=53;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:11,6:10,5 +chrX 77618075 . A G 0 PASS DP=56;GPV=1;SPV=0.0014944;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:11,6:12,6 +chrX 77807724 . T TTC 0 PASS DP=71;GPV=1;SPV=0.042571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,9:9,2:19,7 +chrX 77807744 . C T 0 PASS DP=61;GPV=1;SPV=0.028918;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:7,2:20,7 +chrX 78589925 . T C 0 PASS DP=71;GPV=1;SPV=0.00011173;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,6:16,5 +chrX 78965833 . CCTTTCTTT C 0 PASS DP=31;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:0,3:15,3 +chrX 79317858 . T G 0 PASS DP=58;GPV=1;SPV=0.0040149;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,3:12,8 +chrX 79550326 . C A 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:8,6:0,3 +chrX 80725789 . G A 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:18,2:16,2 +chrX 80956878 . T G 0 PASS DP=53;GPV=1;SPV=1.6051e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:7,10:8,8 +chrX 85015542 . A ATATT 0 PASS DP=45;GPV=1;SPV=0.041575;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2 +chrX 85658013 . T G 0 PASS DP=66;GPV=1;SPV=9.3681e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:11,9:13,6 +chrX 86703721 . G A 0 PASS DP=62;GPV=1;SPV=0.0031109;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:12,5:12,3 +chrX 87107173 . T C 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3 +chrX 87376789 . C G 0 PASS DP=75;GPV=1;SPV=0.0027236;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:15,5:20,6 +chrX 87717069 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chrX 88212494 . T A 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,2:6,2 +chrX 88416330 . A T 0 PASS DP=31;GPV=1;SPV=0.21465;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,5:8,2:3,3 +chrX 88976499 . C T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chrX 89146034 . C G 0 PASS DP=69;GPV=1;SPV=8.9875e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,10:8,3 +chrX 91344255 . AAACAAAAACAAAAAACAAAC A 0 PASS DP=29;GPV=1;SPV=0.0019452;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chrX 91710799 . G A 0 PASS DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,3:10,6 +chrX 91984178 . G A 0 PASS DP=36;GPV=1;SPV=0.10638;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,1:9,6 +chrX 92565528 . T C 0 PASS DP=28;GPV=1;SPV=0.0078215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,1:3,7 +chrX 92674911 . G GTATA 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,3:4,1 +chrX 92837460 . GGAAGGAAGGAATACTTCTAAACTCATTATAATGGGTCA G 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4 +chrX 92992409 . C A 0 PASS DP=41;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:10,3:10,2 +chrX 93493539 . C T 0 PASS DP=75;GPV=1;SPV=2.9482e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:12,11:16,7 +chrX 96829462 . A T 0 PASS DP=56;GPV=1;SPV=0.29013;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,5:11,4:11,1 +chrX 97295734 . C CT 0 PASS DP=48;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:15,6:5,4 +chrX 97583100 . T A 0 PASS DP=63;GPV=1;SPV=0.00097567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,5:12,6 +chrX 98058757 . C G 0 PASS DP=79;GPV=1;SPV=0.0043057;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,3:17,6 +chrX 98438684 . AT A 0 PASS DP=61;GPV=1;SPV=0.0034815;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:12,8:17,6 +chrX 98675715 . A T 0 PASS DP=63;GPV=1;SPV=0.040631;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:20,2:12,4 +chrX 98758324 . T TATATATATAC 0 PASS DP=29;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:2,1:2,1 +chrX 99387850 . C CA 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,4:9,1 +chrX 99938667 . GCCC G 0 PASS DP=62;GPV=1;SPV=0.073354;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,3:12,1 +chrX 99938672 . GGGCGGC G 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,3:15,1 +chrX 99938684 . CAAAGGCTGGG C 0 PASS DP=64;GPV=1;SPV=0.07299;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,3:14,1 +chrX 101158272 . CT C 0 PASS DP=37;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,5:9,1 +chrX 101243201 . C T 0 PASS DP=60;GPV=1;SPV=0.0046201;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:17,7:10,3 +chrX 101253540 . CTTTT C 0 PASS DP=20;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chrX 102251392 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1 +chrX 102499739 . A T 0 PASS DP=74;GPV=1;SPV=0.0014749;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:18,2:11,7 +chrX 102824103 . C CTT 0 PASS DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,2:3,4 +chrX 102824504 . T A 0 PASS DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,4:8,6 +chrX 103004914 . T G 0 PASS DP=57;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,8:2,4:5,4 +chrX 104225608 . A C 0 PASS DP=28;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,8:1,3 +chrX 104325992 . C T 0 PASS DP=47;GPV=1;SPV=0.00096868;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,24:9,13:3,11 +chrX 105439451 . T C 0 PASS DP=59;GPV=1;SPV=0.00023472;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,9:10,6 +chrX 105735028 . A G 0 PASS DP=67;GPV=1;SPV=0.0020462;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,5:17,8 +chrX 106693399 . C CAGAG 0 PASS DP=40;GPV=1;SPV=0.048755;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:9,4:9,2 +chrX 107275037 . A ATTT 0 PASS DP=51;GPV=1;SPV=0.002235;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,8:6,4 +chrX 108309801 . AACAC A 0 PASS DP=33;GPV=1;SPV=0.072836;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:10,5:6,2 +chrX 108526671 . CTCTT C 0 PASS DP=35;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:0,4:9,5 +chrX 109594739 . C CA 0 PASS DP=48;GPV=1;SPV=0.0040948;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,11:15,9:4,2 +chrX 110105721 . G C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chrX 110689851 . CTA C 0 PASS DP=61;GPV=1;SPV=0.14864;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,6:15,2:11,4 +chrX 111404048 . T TTAAAATAAAATAAAA 0 PASS DP=56;GPV=1;SPV=0.0066813;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:6,8:12,4 +chrX 112226663 . G A 0 PASS DP=47;GPV=1;SPV=0.017517;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,2:8,10 +chrX 112350000 . T C 0 PASS DP=63;GPV=1;SPV=0.0027255;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:13,8:14,2 +chrX 113024426 . GGTAT G 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,7:4,3 +chrX 113024490 . TAC T 0 PASS DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,5:3,6 +chrX 113836256 . G GGTGT 0 PASS DP=38;GPV=1;SPV=0.017445;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1 +chrX 115261952 . A C 0 PASS DP=42;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,2:4,1:3,1 +chrX 116797951 . A G 0 PASS DP=64;GPV=1;SPV=0.00020206;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8 +chrX 117792863 . A T 0 PASS DP=71;GPV=1;SPV=0.03876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,5:12,2:8,3 +chrX 117863303 . TA T 0 PASS DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:0,4:11,6 +chrX 117879355 . C G 0 PASS DP=67;GPV=1;SPV=0.00069448;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,6:15,7 +chrX 118378790 . T C 0 PASS DP=41;GPV=1;SPV=0.10564;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:9,5:14,1 +chrX 118692381 . G T 0 PASS DP=55;GPV=1;SPV=0.00011959;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:5,6:8,16 +chrX 118952590 . T C 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,4:11,4 +chrX 119152815 . ATATCACCTG A 0 PASS DP=52;GPV=1;SPV=0.00057277;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,6:6,5 +chrX 119455681 . C CTT 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:6,7:1,3 +chrX 119621446 . G GGTGTGTGTGTGTGTGTGTGT 0 PASS DP=31;GPV=1;SPV=0.3064;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:8,3:7,1 +chrX 120581950 . A G 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,1:5,4 +chrX 120582031 . AG A 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,6:3,3 +chrX 120587999 . C A 0 PASS DP=37;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,4:5,3:5,1 +chrX 121383661 . ATAAAATAAAATAAAATAAAAT A 0 PASS DP=58;GPV=1;SPV=0.0087027;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,9:16,7:8,2 +chrX 122148500 . T TTTTTGTTTTGTTTTG 0 PASS DP=51;GPV=1;SPV=0.034367;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,4:15,1 +chrX 122466001 . T C 0 PASS DP=38;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:7,3:10,3 +chrX 122466025 . A AAT 0 PASS DP=40;GPV=1;SPV=0.13168;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,6:7,3:12,3 +chrX 123698457 . C CA 0 PASS DP=38;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,6:8,4:8,2 +chrX 123889997 . ATTTTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:7,2:3,3 +chrX 123891823 . T TA 0 PASS DP=58;GPV=1;SPV=0.00044917;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:9,11:14,6 +chrX 123912216 . G GAAA 0 PASS DP=36;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:6,8:1,1 +chrX 123921883 . AT A 0 PASS DP=42;GPV=1;SPV=0.075461;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,1:13,6 +chrX 123922946 . CA C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chrX 123939501 . A AACAC 0 PASS DP=41;GPV=1;SPV=0.02457;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:6,3:10,9 +chrX 124218308 . T TACACACAC 0 PASS DP=36;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3 +chrX 124437104 . ATT A 0 PASS DP=29;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,4:3,2 +chrX 125117010 . C CA 0 PASS DP=33;GPV=1;SPV=0.020124;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:4,6:3,1 +chrX 125163070 . C T 0 PASS DP=52;GPV=1;SPV=0.010975;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:5,7:13,6 +chrX 126673196 . T C 0 PASS DP=36;GPV=1;SPV=0.041461;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2 +chrX 127366593 . C T 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,4:6,1 +chrX 127505221 . ATAT A 0 PASS DP=35;GPV=1;SPV=0.0015096;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,15:6,8:2,7 +chrX 127749606 . CAT C 0 PASS DP=60;GPV=1;SPV=0.087068;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:16,3:16,2 +chrX 127821614 . CTT C 0 PASS DP=45;GPV=1;SPV=0.0038232;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:6,10:9,5 +chrX 127891640 . C T 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:10,6:12,4 +chrX 128491078 . G A 0 PASS DP=71;GPV=1;SPV=0.00039908;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:26,27:12,15:14,12 +chrX 128528655 . AACACAC A 0 PASS DP=32;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,7:5,6:4,1 +chrX 128691631 . C A 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4 +chrX 128979419 . GTGTATATATATGTATATA G 0 PASS DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:8,2:11,5 +chrX 129720126 . TCTCCA T 0 PASS DP=56;GPV=1;SPV=0.00049102;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:6,7:15,6 +chrX 131194910 . C A 0 PASS DP=66;GPV=1;SPV=0.0022407;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:9,6:19,4 +chrX 131293722 . C CTGTGTGTGTGTG 0 PASS DP=32;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:7,2:2,2 +chrX 131445399 . C CTCTT 0 PASS DP=32;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,1:12,3 +chrX 132571464 . TATAC T 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:1,1:2,3 +chrX 133496454 . G A 0 PASS DP=52;GPV=1;SPV=0.11419;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:14,1:17,5 +chrX 133498998 . CTT C 0 PASS DP=38;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,2:7,5 +chrX 135123439 . T C 0 PASS DP=51;GPV=1;SPV=0.01932;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,3:7,8 +chrX 135124763 . G A 0 PASS DP=46;GPV=1;SPV=0.032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,1:8,6 +chrX 135824830 . G A 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:18,5:7,1 +chrX 135867898 . T G 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chrX 136109942 . AAG A 0 PASS DP=43;GPV=1;SPV=0.24484;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,1:9,3 +chrX 136473073 . GAGGGAGGAATGAAGGGAAGAA G 0 PASS DP=37;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,9:7,3 +chrX 136600800 . T C 0 PASS DP=40;GPV=1;SPV=0.018564;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,5:8,2 +chrX 136644723 . T TCAAA 0 PASS DP=62;GPV=1;SPV=0.0062408;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,17:8,7:18,10 +chrX 136939150 . G C 0 PASS DP=23;GPV=1;SPV=0.44608;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,3:9,2:2,1 +chrX 136958091 . T C 0 PASS DP=74;GPV=1;SPV=0.0078314;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:15,4:19,4 +chrX 137557538 . AAAAT A 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chrX 138017063 . C CA 0 PASS DP=41;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:14,4:4,2 +chrX 139304610 . T G 0 PASS DP=76;GPV=1;SPV=0.00040366;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:19,5:10,6 +chrX 139503279 . CGT C 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,7:1,1 +chrX 140188892 . C G 0 PASS DP=52;GPV=1;SPV=0.038272;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:16,7:13,4 +chrX 140215938 . C T 0 PASS DP=54;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,4:11,5 +chrX 140723391 . T TAC 0 PASS DP=44;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,6:8,2:13,4 +chrX 141095375 . G A 0 PASS DP=29;GPV=1;SPV=0.029349;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,4:2,4 +chrX 141111829 . C T 0 PASS DP=43;GPV=1;SPV=0.22206;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:18,3:8,1 +chrX 141349308 . G C 0 PASS DP=73;GPV=1;SPV=0.0028525;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:11,7:23,4 +chrX 141508038 . A G 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3 +chrX 141544104 . GAA G 0 PASS DP=42;GPV=1;SPV=0.19974;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:18,2:8,3 +chrX 141759742 . TAC T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3 +chrX 141791198 . GT G 0 PASS DP=45;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2 +chrX 142171661 . A G 0 PASS DP=50;GPV=1;SPV=0.011608;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4 +chrX 142340513 . C G 0 PASS DP=53;GPV=1;SPV=0.00067301;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,6:8,4 +chrX 142569120 . TTTTCTTTC T 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,1:18,3 +chrX 143206799 . T C 0 PASS DP=61;GPV=1;SPV=2.0941e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,7:8,7 +chrX 143865197 . ATG A 0 PASS DP=39;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,9:3,6:4,3 +chrX 144103798 . T C 0 PASS DP=44;GPV=1;SPV=0.00068862;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:4,5:5,7 +chrX 144103820 . CTTT C 0 PASS DP=33;GPV=1;SPV=4.7337e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:4,13:2,9:2,4 +chrX 144202168 . T TTTCCTTCC 0 PASS DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,2:14,3 +chrX 144475856 . T TAA 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2 +chrX 144724939 . T A 0 PASS DP=62;GPV=1;SPV=0.0012196;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,9:13,1 +chrX 144800095 . A G 0 PASS DP=49;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,4:10,3:6,1 +chrX 145000425 . C CT 0 PASS DP=36;GPV=1;SPV=0.0031702;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:3,7:6,4 +chrX 145435578 . CCACGG C 0 PASS DP=60;GPV=1;SPV=0.045968;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,6:8,4:8,2 +chrX 145728671 . G T 0 PASS DP=55;GPV=1;SPV=0.00018161;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,4:7,6 +chrX 145841803 . G A 0 PASS DP=40;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:16,2:6,2 +chrX 146042763 . C A 0 PASS DP=39;GPV=1;SPV=0.0012285;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,3:7,5 +chrX 146042841 . T A 0 PASS DP=43;GPV=1;SPV=0.0016748;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:5,4:4,5 +chrX 146088948 . T TTCTTTTC 0 PASS DP=51;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,13:14,5:6,8 +chrX 147025443 . T TAAA 0 PASS DP=44;GPV=1;SPV=0.16089;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,4:13,1:7,3 +chrX 147111915 . C CACACACACACACACACACAA 0 PASS DP=42;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:8,2:11,3 +chrX 147226789 . A G 0 PASS DP=28;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:4,1:7,3 +chrX 147509349 . A AAT 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,6:6,6 +chrX 147756133 . C CCA 0 PASS DP=48;GPV=1;SPV=0.019523;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:12,8:8,6 +chrX 149272569 . C CAA 0 PASS DP=33;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,4:3,3 +chrX 149935818 . T C 0 PASS DP=57;GPV=1;SPV=0.019281;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,3:10,2 +chrX 150132345 . C T 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,1:8,3 +chrX 150385277 . T TACAC 0 PASS DP=46;GPV=1;SPV=0.010569;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,12:7,9:5,3 +chrX 151092238 . C T 0 PASS DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,3:11,3 +chrX 152182721 . G T 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,7:2,4:0,3 +chrX 152239978 . A C 0 PASS DP=39;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:16,3:9,1 +chrX 153598416 . GA G 0 PASS DP=56;GPV=1;SPV=0.0024779;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,10:7,7 +chrX 153621258 . GA G 0 PASS DP=39;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,7:8,1 +chrX 154104672 . CAG C 0 PASS DP=57;GPV=1;SPV=0.11141;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,3:12,1 +chrX 154106779 . C CA 0 PASS DP=43;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:9,6:8,1 +chrX 154240626 . C CTT 0 PASS DP=26;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:0,0:12,4 +chrX 154519083 . C CT 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2 +chrY 11147442 . A G 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,3:8,5 +chrY 11163520 . G T 0 PASS DP=70;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2 +chrY 11180965 . A G 0 PASS DP=112;GPV=1;SPV=0.020926;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:49,5:5,1 +chrY 11189765 . T C 0 PASS DP=106;GPV=1;SPV=0.031957;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:9,1:50,6 +chrY 11203502 . G A 0 PASS DP=82;GPV=1;SPV=0.039802;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:18,1:21,4 +chrY 11203520 . G C 0 PASS DP=72;GPV=1;SPV=0.020882;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,1:17,5 +chrY 11206834 . C CAA 0 PASS DP=151;GPV=1;SPV=0.042084;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,10:32,4:31,6 +chrY 11260010 . A G 0 PASS DP=334;GPV=1;SPV=0.030837;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:166,30:91,13:75,17 +chrY 11284353 . T C 0 PASS DP=423;GPV=1;SPV=0.048153;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:193,36:60,21:133,15 +chrY 11409692 . G C 0 PASS DP=90;GPV=1;SPV=0.0054071;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:5,5:30,11 +chrY 56828952 . G T 0 PASS DP=142;GPV=1;SPV=0.039467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:69,10:33,4:36,6 +chrY 56835443 . G T 0 PASS DP=181;GPV=1;SPV=0.018332;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:90,18:44,12:46,6 +chrY 56886746 . A G 0 PASS DP=238;GPV=1;SPV=0.0035615;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:114,23:57,9:57,14
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/I.vcf Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,5405 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 269731 . G T 0 PASS DP=55;GPV=1;SPV=0.016586;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:9,2:16,5 +chr1 271443 . G T 0 PASS DP=64;GPV=1;SPV=0.0016182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:15,4:12,7 +chr1 1248267 . A AC 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,1:17,3 +chr1 2020828 . A C 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,4:12,7 +chr1 2085733 . C T 0 PASS DP=74;GPV=1;SPV=0.012493;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:16,2:18,5 +chr1 2348700 . C T 0 PASS DP=52;GPV=1;SPV=0.0026931;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,6:9,5 +chr1 2366985 . T C 0 PASS DP=69;GPV=1;SPV=0.034197;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3 +chr1 2658795 . A T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr1 2672087 . G A 0 PASS DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:12,3:17,2 +chr1 3668055 . C A 0 PASS DP=54;GPV=1;SPV=0.00031346;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,5:9,8 +chr1 4066911 . A ACT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chr1 4111429 . A C 0 PASS DP=70;GPV=1;SPV=0.0011142;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,6:10,2 +chr1 4206589 . G A 0 PASS DP=72;GPV=1;SPV=0.00094617;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:17,7:16,8 +chr1 6498731 . TACGGG T 0 PASS DP=75;GPV=1;SPV=0.00022147;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:13,4:12,6 +chr1 8327243 . C A 0 PASS DP=68;GPV=1;SPV=7.8465e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:11,10:13,4 +chr1 8556639 . A G 0 PASS DP=70;GPV=1;SPV=0.000154;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,3:10,6 +chr1 9108397 . G T 0 PASS DP=65;GPV=1;SPV=0.025922;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2 +chr1 10758330 . T C 0 PASS DP=35;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:14,4:3,3 +chr1 10791081 . C CA 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:14,2:6,3 +chr1 10964151 . G A 0 PASS DP=63;GPV=1;SPV=0.00022074;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,7:10,6 +chr1 11877601 . C T 0 PASS DP=62;GPV=1;SPV=0.0019011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,3:14,6 +chr1 12888921 . T TCC 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2 +chr1 12938147 . C A 0 PASS DP=73;GPV=1;SPV=0.049083;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:15,1:16,8 +chr1 13070264 . T C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2 +chr1 13369246 . T C 0 PASS DP=66;GPV=1;SPV=0.045787;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,5:15,4 +chr1 13597732 . G C 0 PASS DP=55;GPV=1;SPV=0.0010783;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:14,6:7,5 +chr1 14557666 . G GTGTGGT 0 PASS DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:14,2:13,2 +chr1 14883334 . G A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:2,2:3,1 +chr1 15206627 . T TGTGTTTAGGAATCGGGTGAGTTTA 0 PASS DP=45;GPV=1;SPV=0.0062786;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:5,6:14,4 +chr1 16180433 . A C 0 PASS DP=51;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,2:2,1:1,1 +chr1 16356168 . C CT 0 PASS DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,2:4,6 +chr1 16408869 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.010143;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:7,7:1,1 +chr1 16509718 . T A 0 PASS DP=128;GPV=1;SPV=0.026634;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:60,17:33,8:27,9 +chr1 16509719 . C A 0 PASS DP=130;GPV=1;SPV=0.039535;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:59,17:32,8:27,9 +chr1 16512994 . A G 0 PASS DP=119;GPV=1;SPV=0.0097219;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,17:19,8:27,9 +chr1 16513547 . G A 0 PASS DP=216;GPV=1;SPV=0.044761;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:114,16:61,7:53,9 +chr1 16513636 . C T 0 PASS DP=178;GPV=1;SPV=0.010031;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,22:43,10:37,12 +chr1 16564382 . G C 0 PASS DP=264;GPV=1;SPV=0.037792;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:134,22:85,12:49,10 +chr1 16601216 . C A 0 PASS DP=226;GPV=1;SPV=0.018555;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:103,26:39,14:64,12 +chr1 16725350 . C T 0 PASS DP=273;GPV=1;SPV=0.0084694;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:60,9:70,18 +chr1 16934842 . C T 0 PASS DP=62;GPV=1;SPV=0.34103;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,4:9,3:8,1 +chr1 16947468 . C CAAT 0 PASS DP=94;GPV=1;SPV=0.041416;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:17,4:24,5 +chr1 17357944 . A C 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,1:7,3 +chr1 17444539 . T G 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2 +chr1 17524364 . T TACAC 0 PASS DP=27;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:3,5:3,1 +chr1 18060769 . T A 0 PASS DP=43;GPV=1;SPV=0.034015;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,8:7,4 +chr1 18273462 . C CTCTT 0 PASS DP=43;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:2,5:7,1 +chr1 18474502 . G GTC 0 PASS DP=66;GPV=1;SPV=0.14244;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,5:16,3:23,2 +chr1 20011131 . C CA 0 PASS DP=68;GPV=1;SPV=0.015316;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:9,8:16,2 +chr1 20035496 . A C 0 PASS DP=68;GPV=1;SPV=0.00017262;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,7:13,6 +chr1 20668564 . C A 0 PASS DP=78;GPV=1;SPV=5.9655e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,8:14,6 +chr1 21214809 . C CT 0 PASS DP=40;GPV=1;SPV=0.00085614;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,15:5,11:4,4 +chr1 22069170 . CTTTT C 0 PASS DP=27;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,2:2,3 +chr1 23142700 . T C 0 PASS DP=33;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,2:0,1:1,1 +chr1 23992096 . T TTTC 0 PASS DP=40;GPV=1;SPV=0.0016669;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:5,7:9,6 +chr1 24017891 . T G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr1 24196544 . A C 0 PASS DP=33;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,2:0,2:0,0 +chr1 24553122 . T C 0 PASS DP=50;GPV=1;SPV=0.021038;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr1 27489252 . G A 0 PASS DP=27;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:2,4:4,1 +chr1 27666312 . A AAT 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 28658736 . G A 0 PASS DP=51;GPV=1;SPV=0.022713;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,5:11,2 +chr1 30487019 . C CAA 0 PASS DP=35;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,9:5,7:4,2 +chr1 31251996 . C T 0 PASS DP=44;GPV=1;SPV=0.090497;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:3,4:20,1 +chr1 31552470 . G A 0 PASS DP=74;GPV=1;SPV=0.00017822;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:19,10:8,2 +chr1 32093399 . CT C 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2 +chr1 32753269 . G C 0 PASS DP=41;GPV=1;SPV=0.0057147;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:11,11:2,5 +chr1 32976485 . A AACACACACAC 0 PASS DP=37;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,2:2,3 +chr1 33052839 . T TG 0 PASS DP=61;GPV=1;SPV=0.064526;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:21,3:6,1 +chr1 33052861 . T C 0 PASS DP=57;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:16,4:7,3 +chr1 33826414 . G T 0 PASS DP=57;GPV=1;SPV=0.001327;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,7:9,8 +chr1 35015945 . CT C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,9:5,2 +chr1 36129412 . T TA 0 PASS DP=36;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,4:4,2 +chr1 37078450 . T C 0 PASS DP=42;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:2,5:1,4:1,1 +chr1 39941007 . C A 0 PASS DP=86;GPV=1;SPV=0.00031349;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:19,3:14,8 +chr1 41301699 . C CT 0 PASS DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3 +chr1 41506602 . T TG 0 PASS DP=47;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,1:1,1 +chr1 42335809 . T G 0 PASS DP=58;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:2,2:0,1:2,1 +chr1 42750999 . T C 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr1 43141270 . C G 0 PASS DP=61;GPV=1;SPV=0.00068429;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,7:13,4 +chr1 43670556 . A ATTT 0 PASS DP=24;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,5:3,1:3,4 +chr1 44844402 . C T 0 PASS DP=45;GPV=1;SPV=0.016858;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:6,2:3,3 +chr1 44913110 . A T 0 PASS DP=33;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:6,1:3,3 +chr1 45750823 . G C 0 PASS DP=81;GPV=1;SPV=0.0014366;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:11,5:25,6 +chr1 46241374 . G A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,2:12,2 +chr1 46501126 . C A 0 PASS DP=28;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,3:7,2 +chr1 47880999 . T C 0 PASS DP=63;GPV=1;SPV=0.00072376;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:20,8:7,8 +chr1 48083307 . C CT 0 PASS DP=27;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2 +chr1 48383028 . G A 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:6,1:16,4 +chr1 50527811 . G GTCTCTC 0 PASS DP=43;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:9,4:8,2 +chr1 51721990 . C T 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:16,10:15,2 +chr1 53100726 . G A 0 PASS DP=44;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:9,3:9,2 +chr1 54235448 . ATTT A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,3:4,2 +chr1 54539667 . CTA C 0 PASS DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:11,3:15,4 +chr1 55252557 . C T 0 PASS DP=59;GPV=1;SPV=3.545e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,6:9,8 +chr1 55420073 . C CT 0 PASS DP=31;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,3:5,1 +chr1 56118818 . CAAATAAAATA C 0 PASS DP=47;GPV=1;SPV=0.014795;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,3:11,6 +chr1 57153623 . GT G 0 PASS DP=72;GPV=1;SPV=0.077619;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:23,1:16,4 +chr1 58373169 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2 +chr1 58375665 . C T 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,5:4,3 +chr1 58713853 . A AG 0 PASS DP=54;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,4:12,2:9,2 +chr1 60146729 . G GT 0 PASS DP=27;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,4:3,1 +chr1 60858389 . GGTGTGTGTGTGT G 0 PASS DP=35;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,12:8,10:2,2 +chr1 62125264 . C A 0 PASS DP=24;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:2,4:2,1 +chr1 62324554 . G A 0 PASS DP=48;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:20,3:3,2 +chr1 62465482 . A T 0 PASS DP=67;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:4,2:1,1:3,1 +chr1 64016839 . G A 0 PASS DP=46;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:11,8:9,7 +chr1 65472411 . A AACACACACACACACACACAC 0 PASS DP=38;GPV=1;SPV=0.12189;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,1:14,4 +chr1 66130826 . C T 0 PASS DP=53;GPV=1;SPV=0.0063293;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,5:10,4 +chr1 66675541 . C T 0 PASS DP=23;GPV=1;SPV=0.0024902;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,2:1,6 +chr1 66892898 . A T 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2 +chr1 67205911 . C CTT 0 PASS DP=43;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:5,1:16,3 +chr1 67299917 . C G 0 PASS DP=63;GPV=1;SPV=0.087902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:21,3:10,1 +chr1 67337901 . T TA 0 PASS DP=44;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,1:9,4 +chr1 67446182 . C CA 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr1 68038858 . T G 0 PASS DP=44;GPV=1;SPV=0.014127;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,4:9,5 +chr1 68705885 . C G 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,2:14,2 +chr1 68705887 . G C 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr1 69778971 . T TACACACAC 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2 +chr1 70264475 . CA C 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,8:5,1 +chr1 70770214 . G A 0 PASS DP=56;GPV=1;SPV=0.00023235;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,6:7,5 +chr1 70981320 . CTTCTTTCT C 0 PASS DP=33;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:0,1:9,7 +chr1 71570644 . C CTTATTA 0 PASS DP=40;GPV=1;SPV=0.011427;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,3:10,6 +chr1 72831384 . A T 0 PASS DP=67;GPV=1;SPV=0.00046753;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:11,4:14,7 +chr1 73957635 . C T 0 PASS DP=68;GPV=1;SPV=0.010972;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:30,7:5,3 +chr1 75795181 . CT C 0 PASS DP=25;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1 +chr1 75840369 . GGGACATGGATGAAATT G 0 PASS DP=48;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chr1 75878828 . GAA G 0 PASS DP=51;GPV=1;SPV=0.0020556;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,14:5,8:9,6 +chr1 76123819 . G A 0 PASS DP=34;GPV=1;SPV=0.00039496;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,16:3,10:3,6 +chr1 76202268 . A ATGTGTGTG 0 PASS DP=42;GPV=1;SPV=0.070566;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:11,2:9,4 +chr1 76936953 . G GGCGTGTGTGTGTGTGT 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1 +chr1 77423219 . T TAA 0 PASS DP=28;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:2,6:3,1 +chr1 78025354 . GA G 0 PASS DP=37;GPV=1;SPV=0.0013772;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:6,12:3,3 +chr1 78400057 . A G 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1 +chr1 79093208 . C CTGTG 0 PASS DP=37;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,4:9,3:7,1 +chr1 79919640 . A C 0 PASS DP=27;GPV=1;SPV=0.010374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,3:4,6 +chr1 80114791 . A AT 0 PASS DP=48;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,6:5,5 +chr1 81343072 . CT C 0 PASS DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,5:9,1 +chr1 81557460 . A AAAGAAAG 0 PASS DP=49;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:7,4:6,3 +chr1 82163900 . CAATA C 0 PASS DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,7:8,5 +chr1 83122032 . TTGTGTG T 0 PASS DP=28;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:7,4:3,2 +chr1 83892925 . AAAG A 0 PASS DP=39;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:5,3:10,1 +chr1 84508565 . G T 0 PASS DP=56;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:18,5:12,2 +chr1 85084250 . GTATA G 0 PASS DP=33;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,10:1,8:2,2 +chr1 85996536 . T G 0 PASS DP=35;GPV=1;SPV=0.008646;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:4,4:9,4 +chr1 88539041 . ATGTGTG A 0 PASS DP=18;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,4:1,4:0,0 +chr1 90378989 . AC A 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,1:13,4 +chr1 90522609 . G GATAA 0 PASS DP=60;GPV=1;SPV=0.0008665;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,11:10,8:11,3 +chr1 90826152 . G A 0 PASS DP=44;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,13:4,9:8,4 +chr1 90826155 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,9:4,6:6,3 +chr1 90891794 . C CG 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,4:4,1 +chr1 91929065 . G A 0 PASS DP=40;GPV=1;SPV=0.25989;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:10,2:15,2 +chr1 91958214 . C CTTT 0 PASS DP=48;GPV=1;SPV=0.03148;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:5,5:11,4 +chr1 92586588 . G GTT 0 PASS DP=25;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,8:2,4:2,4 +chr1 96450604 . CAA C 0 PASS DP=38;GPV=1;SPV=0.12042;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,3:4,4 +chr1 97342390 . C T 0 PASS DP=64;GPV=1;SPV=0.00051949;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,4:8,5 +chr1 97735685 . CATAA C 0 PASS DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1 +chr1 98255236 . A G 0 PASS DP=67;GPV=1;SPV=7.2707e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,6:14,9 +chr1 98492648 . A AT 0 PASS DP=39;GPV=1;SPV=0.045397;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,6:7,2 +chr1 98973303 . GGTAAATGTAGGGATTGACAGTAGGAAGAGAATACC G 0 PASS DP=51;GPV=1;SPV=0.036957;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,4:11,3 +chr1 100843450 . T C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr1 101521631 . C CGT 0 PASS DP=36;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,7:2,2 +chr1 101814986 . A G 0 PASS DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,4:12,6 +chr1 102494919 . T C 0 PASS DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:13,3:19,3 +chr1 102839949 . GC G 0 PASS DP=74;GPV=1;SPV=5.174e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:9,6:16,7 +chr1 103125344 . A T 0 PASS DP=41;GPV=1;SPV=0.029259;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,3:8,4 +chr1 104209755 . A AT 0 PASS DP=20;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:1,4:4,3 +chr1 105484294 . GT G 0 PASS DP=47;GPV=1;SPV=0.00063127;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,4:10,6 +chr1 106356046 . A G 0 PASS DP=62;GPV=1;SPV=0.0089499;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:13,3:15,5 +chr1 107319867 . A T 0 PASS DP=52;GPV=1;SPV=0.029166;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,4:11,2 +chr1 107813967 . AGT A 0 PASS DP=42;GPV=1;SPV=0.0070965;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,8:5,4:2,4 +chr1 108970973 . T G 0 PASS DP=61;GPV=1;SPV=0.035079;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:17,1:13,5 +chr1 109654189 . AG A 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr1 109654217 . G A 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:11,7:0,1 +chr1 110568000 . A T 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:17,5:8,4 +chr1 110800558 . G A 0 PASS DP=57;GPV=1;SPV=0.00069928;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,4:11,7 +chr1 111065378 . C CT 0 PASS DP=23;GPV=1;SPV=0.00095261;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,9:0,7:2,2 +chr1 111760000 . T A 0 PASS DP=31;GPV=1;SPV=0.29181;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:5,2:10,3 +chr1 112446195 . T TG 0 PASS DP=44;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,10:6,3 +chr1 112839632 . CA C 0 PASS DP=30;GPV=1;SPV=0.0064568;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,5:4,4 +chr1 112887304 . G GT 0 PASS DP=40;GPV=1;SPV=0.0012521;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:3,9:7,9 +chr1 113329679 . G C 0 PASS DP=60;GPV=1;SPV=0.0084152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,4:15,5 +chr1 113416037 . TA T 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,3:13,1 +chr1 113416042 . A ATG 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:8,3:13,2 +chr1 113826659 . AT A 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,3:2,5 +chr1 114023627 . C T 0 PASS DP=48;GPV=1;SPV=0.0027946;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,3:11,6 +chr1 114711520 . G A 0 PASS DP=48;GPV=1;SPV=0.0018005;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,6:8,7 +chr1 115973951 . A C 0 PASS DP=48;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:0,1:1,1 +chr1 116760187 . A T 0 PASS DP=55;GPV=1;SPV=0.0003213;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,3:8,6 +chr1 118165645 . C CT 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1 +chr1 118318922 . ATAACATAGATATTATATATATAAC A 0 PASS DP=75;GPV=1;SPV=0.020516;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,11:14,3:10,8 +chr1 118318948 . T C 0 PASS DP=81;GPV=1;SPV=0.026312;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,11:13,3:8,8 +chr1 119480464 . G GGAAT 0 PASS DP=26;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr1 120133006 . T C 0 PASS DP=64;GPV=1;SPV=0.026923;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,6:15,5 +chr1 120214625 . G A 0 PASS DP=39;GPV=1;SPV=0.041254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,3:10,3 +chr1 120223626 . G A 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr1 120449349 . A G 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,1:17,4 +chr1 120516328 . CTCGAACACCTGACCTCAGG C 0 PASS DP=55;GPV=1;SPV=0.00055646;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,4:8,8 +chr1 120677169 . T A 0 PASS DP=30;GPV=1;SPV=0.034767;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,6:6,2 +chr1 120808134 . A G 0 PASS DP=46;GPV=1;SPV=0.096745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,2:14,4 +chr1 120813144 . G T 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr1 120933113 . G T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,2:5,2 +chr1 120999034 . T G 0 PASS DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,2:6,4 +chr1 121014916 . A C 0 PASS DP=27;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:7,10:0,2 +chr1 121142206 . G GTGTTGCATCTAATGCA 0 PASS DP=33;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1 +chr1 121300216 . C A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr1 121313677 . T A 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr1 121632493 . G C 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr1 121633993 . C A 0 PASS DP=78;GPV=1;SPV=0.061867;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:22,3:22,3 +chr1 121724458 . C T 0 PASS DP=48;GPV=1;SPV=0.0047006;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1 +chr1 121746508 . G A 0 PASS DP=73;GPV=1;SPV=0.025099;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:5,1:26,4 +chr1 121765204 . T C 0 PASS DP=128;GPV=1;SPV=0.021678;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:19,4:25,9 +chr1 121825757 . T A 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr1 122055311 . C T 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,4:2,2 +chr1 122126906 . T A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr1 122130766 . A G 0 PASS DP=71;GPV=1;SPV=0.035683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:0,2:32,6 +chr1 122382551 . T G 0 PASS DP=146;GPV=1;SPV=0.024134;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:77,10:45,7:32,3 +chr1 122382585 . C G 0 PASS DP=151;GPV=1;SPV=0.012337;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:68,20:37,12:31,8 +chr1 124517001 . C G 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:1,0:22,4 +chr1 124704660 . G A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:3,2:10,2 +chr1 124803933 . A C 0 PASS DP=61;GPV=1;SPV=0.049719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,4:14,2 +chr1 124815480 . G C 0 PASS DP=34;GPV=1;SPV=0.024163;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,6:6,1 +chr1 124819793 . A T 0 PASS DP=50;GPV=1;SPV=0.25578;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,1:15,3 +chr1 124824574 . G C 0 PASS DP=63;GPV=1;SPV=0.062015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:26,4:6,1 +chr1 124829879 . A G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:2,0:23,4 +chr1 124836421 . A T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,1:7,4 +chr1 124864443 . T G 0 PASS DP=77;GPV=1;SPV=0.034057;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:31,3:4,5 +chr1 124872309 . G A 0 PASS DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:4,3:10,2 +chr1 125105666 . G C 0 PASS DP=194;GPV=1;SPV=0.027872;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:103,19:65,12:38,7 +chr1 125115225 . A G 0 PASS DP=130;GPV=1;SPV=0.037748;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:43,6:17,1 +chr1 125115420 . A AC 0 PASS DP=143;GPV=1;SPV=0.013226;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:27,4:43,6 +chr1 125115460 . G A 0 PASS DP=145;GPV=1;SPV=0.016349;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:69,9:27,3:42,6 +chr1 125145353 . G A 0 PASS DP=64;GPV=1;SPV=0.14384;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:15,2:21,2 +chr1 125183528 . T C 0 PASS DP=13535;GPV=1;SPV=0.00028913;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7135:6347,761:6156,122:191,639 +chr1 143186576 . G T 0 PASS DP=306;GPV=1;SPV=0.022409;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:159,19:107,15:52,4 +chr1 143186698 . G C 0 PASS DP=380;GPV=1;SPV=0.016502;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:195,26:35,6:160,20 +chr1 143199058 . A T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,3:14,1 +chr1 143354257 . G A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,1:8,3 +chr1 143507941 . T C 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:4,1:21,3 +chr1 143691034 . G A 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:22,2:6,2 +chr1 143749592 . G A 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:7,4:17,6 +chr1 143896059 . C T 0 PASS DP=65;GPV=1;SPV=0.039302;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,4:18,1 +chr1 143899302 . C CAA 0 PASS DP=58;GPV=1;SPV=0.056683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:18,1:10,4 +chr1 144322435 . C T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr1 144907343 . A T 0 PASS DP=56;GPV=1;SPV=0.0012456;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,7:8,3 +chr1 145563251 . CATGGTGTA C 0 PASS DP=74;GPV=1;SPV=0.034945;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:14,6:14,2 +chr1 145697763 . ATTTTTTT A 0 PASS DP=29;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr1 145731539 . G A 0 PASS DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,3:11,5 +chr1 146008839 . C CA 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:5,5:2,2 +chr1 146397037 . A G 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,6:9,2 +chr1 146969025 . G A 0 PASS DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,1:13,3 +chr1 147096496 . A AATGTGTGTGTGTGTCTGTGT 0 PASS DP=33;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,3:9,1 +chr1 147548979 . C T 0 PASS DP=27;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,6:1,2:1,4 +chr1 148239973 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5 +chr1 148268790 . G A 0 PASS DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,5:0,2:0,3 +chr1 148444677 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 148651160 . AAAAT A 0 PASS DP=36;GPV=1;SPV=0.021701;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,6:7,3 +chr1 148651164 . T A 0 PASS DP=32;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,3:0,2:3,1 +chr1 148884876 . G A 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,3:14,1 +chr1 148952338 . C A 0 PASS DP=81;GPV=1;SPV=0.06683;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:19,3:24,2 +chr1 149080805 . T C 0 PASS DP=43;GPV=1;SPV=0.0098611;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,6:5,4 +chr1 149110135 . C G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,5:2,2 +chr1 149142076 . TAC T 0 PASS DP=74;GPV=1;SPV=0.033332;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,7:18,6:12,1 +chr1 149158930 . A G 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr1 149215311 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1 +chr1 149309405 . T A 0 PASS DP=55;GPV=1;SPV=0.16556;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:13,1:18,3 +chr1 149874716 . G A 0 PASS DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,4:9,7 +chr1 150136771 . T TA 0 PASS DP=48;GPV=1;SPV=0.0061864;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4 +chr1 150781906 . G A 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2 +chr1 150905062 . CCA C 0 PASS DP=36;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,14:3,10:2,4 +chr1 151660825 . G A 0 PASS DP=86;GPV=1;SPV=0.001135;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:22,6:21,10 +chr1 151780257 . ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT A 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,2:12,3 +chr1 152156625 . A G 0 PASS DP=35;GPV=1;SPV=0.18237;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,1:9,5 +chr1 152274875 . CT C 0 PASS DP=28;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:4,5:6,1 +chr1 153785086 . A AT 0 PASS DP=51;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,14:13,9:8,5 +chr1 154309581 . CATAT C 0 PASS DP=53;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:12,1:2,3 +chr1 154322489 . C CTTCTTCTTCTT 0 PASS DP=31;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:2,7:4,1 +chr1 154937273 . A G 0 PASS DP=105;GPV=1;SPV=0.003727;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:19,5:33,5 +chr1 156640418 . T TC 0 PASS DP=60;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,6:2,4:5,2 +chr1 157274150 . T C 0 PASS DP=31;GPV=1;SPV=0.057118;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:9,1:4,5 +chr1 157300470 . CAT C 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,3:8,1 +chr1 157760686 . A AGAAAGAAGGAAG 0 PASS DP=41;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,3:7,1 +chr1 159011398 . T A 0 PASS DP=62;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:20,4:9,1:11,3 +chr1 159021939 . CTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,3:3,2 +chr1 159256266 . A T 0 PASS DP=71;GPV=1;SPV=1.1925e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:10,9:15,13 +chr1 160270143 . C CT 0 PASS DP=29;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1 +chr1 160984465 . AAT A 0 PASS DP=29;GPV=1;SPV=0.030104;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,2:7,2 +chr1 161423696 . C T 0 PASS DP=63;GPV=1;SPV=0.0041082;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:18,12:5,5 +chr1 161559730 . G A 0 PASS DP=93;GPV=1;SPV=0.012728;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:27,9:17,7 +chr1 162108902 . C G 0 PASS DP=67;GPV=1;SPV=0.040006;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:22,4:16,4 +chr1 162519003 . C A 0 PASS DP=58;GPV=1;SPV=0.0041602;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:10,8:4,4:6,4 +chr1 162825846 . C T 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,5:10,8 +chr1 163059160 . T TTATATATA 0 PASS DP=32;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,7:2,1 +chr1 163547125 . C T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2 +chr1 163758208 . C G 0 PASS DP=65;GPV=1;SPV=0.13498;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,1:20,3 +chr1 164079940 . A T 0 PASS DP=74;GPV=1;SPV=0.020864;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:19,4:20,4 +chr1 164563555 . T C 0 PASS DP=73;GPV=1;SPV=0.0028166;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,7:19,2 +chr1 164773241 . G GCACACACACACA 0 PASS DP=57;GPV=1;SPV=0.049992;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,5:10,1 +chr1 165139680 . C A 0 PASS DP=76;GPV=1;SPV=0.0077332;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:18,7:19,2 +chr1 166038371 . G C 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:21,4:10,7 +chr1 166318281 . AT A 0 PASS DP=73;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:18,4:9,1:9,3 +chr1 166327704 . GGTCAGAGAACCT G 0 PASS DP=68;GPV=1;SPV=5.6653e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:12,7:13,10 +chr1 166384348 . G A 0 PASS DP=76;GPV=1;SPV=5.3344e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:15,8:13,7 +chr1 166464009 . TTA T 0 PASS DP=57;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,12:14,6:9,6 +chr1 166598336 . TA T 0 PASS DP=69;GPV=1;SPV=0.0044141;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:18,8:16,4 +chr1 166887954 . CAA C 0 PASS DP=36;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:3,6:5,2 +chr1 167044460 . C CTTTTTTTTTT 0 PASS DP=51;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3 +chr1 167177215 . C CT 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr1 167208546 . G GTT 0 PASS DP=36;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,14:3,12:1,2 +chr1 167773894 . TA T 0 PASS DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:15,1:19,3 +chr1 168100235 . G C 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:3,6:2,4 +chr1 168306397 . G A 0 PASS DP=75;GPV=1;SPV=6.3626e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:13,12:12,6 +chr1 169172356 . A G 0 PASS DP=62;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:14,6:5,2:9,4 +chr1 171658179 . G T 0 PASS DP=34;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:5,2:5,2 +chr1 171658181 . G T 0 PASS DP=38;GPV=1;SPV=0.020047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,9:5,6:5,3 +chr1 174349693 . C T 0 PASS DP=42;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,1:12,4 +chr1 174350131 . G C 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,3:9,2 +chr1 175087657 . T A 0 PASS DP=77;GPV=1;SPV=0.0038636;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:18,6:22,8 +chr1 175091559 . TTTTA T 0 PASS DP=53;GPV=1;SPV=0.17881;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,2:18,2 +chr1 175426880 . TAAAATATA T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,3:2,3 +chr1 176049178 . CAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:8,7:3,3 +chr1 176174007 . A G 0 PASS DP=35;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:9,3:5,1 +chr1 176275360 . CAAA C 0 PASS DP=32;GPV=1;SPV=0.0040248;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,9:2,8:3,1 +chr1 177867086 . A T 0 PASS DP=34;GPV=1;SPV=0.27357;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,5:9,4:5,1 +chr1 178661607 . C A 0 PASS DP=51;GPV=1;SPV=0.024305;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,8:8,3:8,5 +chr1 178673275 . A G 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:3,7:12,11 +chr1 179541677 . TA T 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,5:13,4 +chr1 180234012 . G A 0 PASS DP=43;GPV=1;SPV=0.00055105;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:2,6:9,11 +chr1 180473446 . C CA 0 PASS DP=45;GPV=1;SPV=0.0053012;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,12:8,9:4,3 +chr1 181034063 . A G 0 PASS DP=59;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:11,1:17,4 +chr1 181188527 . A AAAATAAATAAAT 0 PASS DP=45;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,10:4,5:8,5 +chr1 181590418 . T A 0 PASS DP=40;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,5:3,3:4,2 +chr1 182075278 . G A 0 PASS DP=24;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,4:0,1 +chr1 182295503 . GA G 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,1:11,4 +chr1 182295508 . A G 0 PASS DP=55;GPV=1;SPV=0.10837;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,1:13,4 +chr1 182299870 . G GGA 0 PASS DP=46;GPV=1;SPV=0.010097;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,12:14,8:2,4 +chr1 182476052 . T A 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr1 182936130 . GT G 0 PASS DP=45;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:13,6:6,4 +chr1 182946992 . T C 0 PASS DP=60;GPV=1;SPV=0.065169;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,2:17,4 +chr1 183236390 . A C 0 PASS DP=39;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:1,3:0,0:1,3 +chr1 183446701 . T A 0 PASS DP=62;GPV=1;SPV=3.0659e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:10,10:11,9 +chr1 183776141 . AT A 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,3:6,3 +chr1 184936021 . G GA 0 PASS DP=46;GPV=1;SPV=0.033449;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,12:10,9:6,3 +chr1 185431986 . G GTCC 0 PASS DP=80;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,4:9,3:15,1 +chr1 186064809 . C CA 0 PASS DP=42;GPV=1;SPV=0.0127;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,8:8,6:7,2 +chr1 187432871 . T TGTATATATATATACAC 0 PASS DP=30;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:5,3:4,5 +chr1 189093126 . C T 0 PASS DP=63;GPV=1;SPV=0.0278;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:21,2:11,5 +chr1 189818494 . G A 0 PASS DP=28;GPV=1;SPV=0.064615;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:3,1:2,1 +chr1 190317171 . C A 0 PASS DP=38;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:8,1:1,3 +chr1 190848998 . T TATAGAG 0 PASS DP=53;GPV=1;SPV=0.03741;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:2,13:1,6:1,7 +chr1 191373158 . CT C 0 PASS DP=35;GPV=1;SPV=0.29545;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,7:7,4:5,3 +chr1 191597193 . TTA T 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,2:14,2 +chr1 191597196 . G A 0 PASS DP=56;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:20,2:12,3 +chr1 192098485 . G C 0 PASS DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:3,4:4,11 +chr1 193564297 . T C 0 PASS DP=77;GPV=1;SPV=0.35726;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:18,4:7,2:11,2 +chr1 194191688 . CTGTGTG C 0 PASS DP=47;GPV=1;SPV=0.045605;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,8:8,7 +chr1 195143152 . G GA 0 PASS DP=40;GPV=1;SPV=0.059981;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:18,3:2,3 +chr1 195286373 . C CTCTTTCTTTCTTTCTTTCTTTCTT 0 PASS DP=43;GPV=1;SPV=0.2092;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,2:21,3 +chr1 196050116 . T C 0 PASS DP=75;GPV=1;SPV=0.078917;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:29,5:15,1 +chr1 196692708 . TTTTC T 0 PASS DP=45;GPV=1;SPV=0.046254;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,1:12,5 +chr1 196692716 . C G 0 PASS DP=43;GPV=1;SPV=0.048435;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:8,2:14,5 +chr1 196759125 . T C 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,4:4,2 +chr1 196759861 . TTA T 0 PASS DP=87;GPV=1;SPV=0.023189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:18,3:24,12 +chr1 196773670 . T A 0 PASS DP=51;GPV=1;SPV=0.32052;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,3:18,1 +chr1 197305904 . A G 0 PASS DP=53;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,2:2,1:1,1 +chr1 201702677 . T C 0 PASS DP=39;GPV=1;SPV=0.086046;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,8:8,4:10,4 +chr1 202125153 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:13,6:2,1 +chr1 202205825 . AC A 0 PASS DP=47;GPV=1;SPV=0.002614;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:13,13:2,6 +chr1 202205968 . CA C 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,2:15,2 +chr1 202799657 . C CA 0 PASS DP=52;GPV=1;SPV=0.003703;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:6,9:13,9 +chr1 203544823 . CT C 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,5:2,1 +chr1 203794717 . CTTT C 0 PASS DP=32;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:7,9:2,4 +chr1 203815379 . C CT 0 PASS DP=34;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,8:7,7:6,1 +chr1 204308691 . T C 0 PASS DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:1,2:8,4 +chr1 204699211 . T A 0 PASS DP=54;GPV=1;SPV=0.20807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:12,4:23,1 +chr1 205115043 . T G 0 PASS DP=75;GPV=1;SPV=0.0027236;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:13,5:22,6 +chr1 205766586 . AC A 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,3:9,1 +chr1 206249005 . T A 0 PASS DP=52;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,5:13,1 +chr1 206612949 . TA T 0 PASS DP=31;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:9,4:4,1 +chr1 207657873 . G T 0 PASS DP=71;GPV=1;SPV=0.00033391;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:17,6:9,5 +chr1 208407255 . C CAAA 0 PASS DP=41;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,13:2,6:0,7 +chr1 210191145 . G A 0 PASS DP=59;GPV=1;SPV=0.00022928;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,7:11,6 +chr1 210217114 . AAG A 0 PASS DP=52;GPV=1;SPV=0.10706;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,3:14,2 +chr1 210243093 . CAAAA C 0 PASS DP=34;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,7:2,1 +chr1 211222740 . C T 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,4:18,5 +chr1 211535165 . T C 0 PASS DP=37;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1 +chr1 211906826 . A C 0 PASS DP=47;GPV=1;SPV=0.37028;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:11,1:22,3 +chr1 212365429 . C CT 0 PASS DP=23;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1 +chr1 212796547 . G A 0 PASS DP=48;GPV=1;SPV=0.0037474;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,7:7,4 +chr1 213046176 . ATTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,8:4,3 +chr1 213063260 . C A 0 PASS DP=59;GPV=1;SPV=4.6521e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,5:10,10 +chr1 213363749 . CTCTT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,1:6,4 +chr1 213363813 . T C 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3 +chr1 213363815 . T C 0 PASS DP=37;GPV=1;SPV=0.013285;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,1:5,5 +chr1 213440593 . T TAA 0 PASS DP=35;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,6:1,2 +chr1 213651244 . C T 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:17,5:9,4 +chr1 215133964 . A C 0 PASS DP=54;GPV=1;SPV=0.0026644;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:6,7:11,10 +chr1 215192766 . T A 0 PASS DP=59;GPV=1;SPV=0.017844;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,4:18,6 +chr1 215391843 . A G 0 PASS DP=73;GPV=1;SPV=4.6905e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:21,29:13,14:8,15 +chr1 216135134 . ACTCT A 0 PASS DP=32;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:9,2:4,3 +chr1 216169734 . T A 0 PASS DP=73;GPV=1;SPV=0.0028525;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:19,3:15,8 +chr1 216439725 . CT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr1 218145450 . G GTGTATATATATA 0 PASS DP=21;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1 +chr1 219170348 . G A 0 PASS DP=50;GPV=1;SPV=0.13055;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,5:7,1:8,4 +chr1 219470415 . T TCTATCTATCTATCTATCTATCTATCTATCTAC 0 PASS DP=26;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,6:1,4:1,2 +chr1 219749979 . C CTT 0 PASS DP=18;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:4,4:0,1 +chr1 219927681 . A C 0 PASS DP=42;GPV=1;SPV=0.017327;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,8:7,1 +chr1 221766455 . T TGTGA 0 PASS DP=47;GPV=1;SPV=0.010098;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,6:8,3:6,3 +chr1 221918739 . ATATATATAT A 0 PASS DP=25;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,2:2,1:1,1 +chr1 222488773 . CG C 0 PASS DP=107;GPV=1;SPV=0.022703;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:56,7:46,4:10,3 +chr1 223117579 . A G 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,2:21,2 +chr1 223937919 . C T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,4:3,3 +chr1 223986360 . C CTAACTAA 0 PASS DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1 +chr1 224128983 . C CAA 0 PASS DP=41;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:7,7:1,1 +chr1 224276911 . TTGACACATAAAACTAGTTTTA T 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,3:12,2 +chr1 224913826 . A ATGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,1:4,3 +chr1 225440291 . C CT 0 PASS DP=32;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1 +chr1 226169715 . AC A 0 PASS DP=49;GPV=1;SPV=0.16972;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2 +chr1 227709976 . G GT 0 PASS DP=23;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,2:4,2 +chr1 227959215 . A AT 0 PASS DP=42;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,7:5,5:10,2 +chr1 229215269 . T C 0 PASS DP=55;GPV=1;SPV=7.167e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:5,8:8,5 +chr1 229421349 . CTT C 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,7:3,5 +chr1 230354076 . T A 0 PASS DP=74;GPV=1;SPV=0.0089367;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,3:20,8 +chr1 230580340 . CTTTTT C 0 PASS DP=30;GPV=1;SPV=0.36477;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:11,1:4,3 +chr1 230830594 . T G 0 PASS DP=36;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:4,3:2,1 +chr1 233729238 . G A 0 PASS DP=50;GPV=1;SPV=0.0013699;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5 +chr1 234334671 . A T 0 PASS DP=57;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,4:0,1:1,3 +chr1 234342591 . T TTAGATAGA 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,5:7,4 +chr1 234699282 . G A 0 PASS DP=23;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:1,1:4,1 +chr1 234789878 . A C 0 PASS DP=96;GPV=1;SPV=0.01554;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:19,9:20,4 +chr1 234995623 . ATG A 0 PASS DP=61;GPV=1;SPV=0.028928;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:15,6:16,1 +chr1 234995802 . TGTATATATAG T 0 PASS DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:10,2:17,5 +chr1 235788804 . C T 0 PASS DP=71;GPV=1;SPV=0.0022122;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4 +chr1 236669073 . T TTTCCTTCC 0 PASS DP=35;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:5,5:8,4 +chr1 237077437 . T C 0 PASS DP=72;GPV=1;SPV=0.010714;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,6:13,3 +chr1 237180692 . A G 0 PASS DP=56;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,4:10,3:15,1 +chr1 237208940 . A G 0 PASS DP=16;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,2:0,0 +chr1 237451972 . GTGTGTGTA G 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:6,5:12,5 +chr1 237584647 . C CTGTTTTT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,3:4,2 +chr1 238337592 . C T 0 PASS DP=39;GPV=1;SPV=0.054281;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,1:11,5 +chr1 238837481 . G C 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2 +chr1 239959448 . G A 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr1 241483294 . A AT 0 PASS DP=38;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,5:7,6 +chr1 242385979 . C A 0 PASS DP=53;GPV=1;SPV=0.0035067;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,5:6,3 +chr1 242475277 . G C 0 PASS DP=68;GPV=1;SPV=1.0723e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:12,10:11,11 +chr1 242996654 . G A 0 PASS DP=44;GPV=1;SPV=0.024218;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,3:7,5 +chr1 243039650 . T TAA 0 PASS DP=59;GPV=1;SPV=0.16219;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr1 243275856 . GT G 0 PASS DP=27;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,3:3,2 +chr1 244876110 . CA C 0 PASS DP=24;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,5:1,1 +chr1 246288062 . CTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1 +chr1 246787147 . A T 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,3:9,4 +chr1 247439061 . A T 0 PASS DP=47;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,5:7,1 +chr1 248005651 . A G 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,3:10,2 +chr1 248084006 . A C 0 PASS DP=78;GPV=1;SPV=0.045183;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:22,7:17,2 +chr10 479328 . C CTT 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1 +chr10 1672704 . C G 0 PASS DP=38;GPV=1;SPV=0.037811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,5:8,6 +chr10 2723863 . C T 0 PASS DP=60;GPV=1;SPV=0.011827;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,3:13,5 +chr10 3458378 . A T 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,6:6,1 +chr10 3466719 . G GTA 0 PASS DP=52;GPV=1;SPV=0.016109;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:11,8:7,4 +chr10 3957167 . T TTTATTATTA 0 PASS DP=33;GPV=1;SPV=0.010479;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:8,6:4,5 +chr10 4308075 . CT C 0 PASS DP=30;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:4,4:3,2 +chr10 4802231 . A G 0 PASS DP=68;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:1,5:1,1:0,4 +chr10 5047200 . G C 0 PASS DP=63;GPV=1;SPV=0.008739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:19,2:5,4 +chr10 5957593 . C CT 0 PASS DP=32;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1 +chr10 6392542 . C A 0 PASS DP=52;GPV=1;SPV=0.0035931;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,2:5,5 +chr10 6707263 . T TATCC 0 PASS DP=44;GPV=1;SPV=0.00037514;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:3,6:2,5 +chr10 7817849 . GTTT G 0 PASS DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1 +chr10 7994977 . GA G 0 PASS DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:6,3:3,1 +chr10 8007562 . TTATATATATATA T 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,2:1,2 +chr10 8335904 . C CAA 0 PASS DP=29;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:8,3:4,1 +chr10 9656343 . A G 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,2:12,4 +chr10 10005606 . C A 0 PASS DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1 +chr10 10747900 . T C 0 PASS DP=46;GPV=1;SPV=0.010322;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:4,8:10,3 +chr10 11446557 . C T 0 PASS DP=44;GPV=1;SPV=0.0060788;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,4:8,8 +chr10 11876574 . T TTGTGTG 0 PASS DP=47;GPV=1;SPV=0.0060349;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:1,7:10,1 +chr10 12330746 . T C 0 PASS DP=28;GPV=1;SPV=0.003663;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,10:1,7:0,3 +chr10 12408848 . C CT 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr10 12413570 . T TTGC 0 PASS DP=28;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:6,2:8,3 +chr10 12538885 . C CA 0 PASS DP=24;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:2,4:1,2 +chr10 12801333 . C CT 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr10 12889075 . C T 0 PASS DP=61;GPV=1;SPV=0.049052;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:15,4:13,4 +chr10 12929264 . A C 0 PASS DP=45;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:5,2:1,1:4,1 +chr10 13908164 . T TA 0 PASS DP=26;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,8:3,2 +chr10 14373925 . A ATTTT 0 PASS DP=44;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,11:3,2:5,9 +chr10 15644122 . A T 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,5:13,2 +chr10 16533321 . A AT 0 PASS DP=67;GPV=1;SPV=0.00075779;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,9:17,6:6,3 +chr10 17102252 . C CTTAT 0 PASS DP=40;GPV=1;SPV=0.014064;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3 +chr10 17774798 . T TTCTCTCTC 0 PASS DP=19;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:2,3:0,4 +chr10 19563250 . A T 0 PASS DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr10 19748703 . C T 0 PASS DP=65;GPV=1;SPV=3.8037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:14,5:7,9 +chr10 20140405 . A AAATATCTATCTATC 0 PASS DP=36;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,8:4,6:3,2 +chr10 20721458 . G GT 0 PASS DP=46;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,8:8,5:4,3 +chr10 21048697 . T A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5 +chr10 21325974 . C T 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr10 21325977 . TA T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr10 21405648 . C CA 0 PASS DP=48;GPV=1;SPV=0.052629;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:19,2:3,3 +chr10 21871118 . C G 0 PASS DP=64;GPV=1;SPV=0.00038475;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,4:11,7 +chr10 21883251 . A AACACAC 0 PASS DP=43;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,9:5,5:3,4 +chr10 23064079 . G T 0 PASS DP=69;GPV=1;SPV=0.0013903;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:18,5:10,5 +chr10 23527144 . C G 0 PASS DP=67;GPV=1;SPV=9.1723e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:12,8:13,8 +chr10 23824646 . A T 0 PASS DP=31;GPV=1;SPV=0.00065258;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,4:2,3 +chr10 23943175 . A G 0 PASS DP=50;GPV=1;SPV=0.0041352;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,5:9,3 +chr10 23943176 . G T 0 PASS DP=47;GPV=1;SPV=0.012535;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:11,4:7,2 +chr10 26473999 . CA C 0 PASS DP=33;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,7:5,3 +chr10 26727342 . T C 0 PASS DP=38;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:2,1:11,4 +chr10 27443463 . A G 0 PASS DP=41;GPV=1;SPV=0.007525;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,4:9,10 +chr10 27630080 . C A 0 PASS DP=40;GPV=1;SPV=0.0035533;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,8:8,6 +chr10 28310020 . T TTTTTTTA 0 PASS DP=38;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:7,5:3,4 +chr10 29258674 . AG A 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1 +chr10 29907575 . C T 0 PASS DP=32;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:4,2:12,2 +chr10 30167116 . CATTT C 0 PASS DP=49;GPV=1;SPV=0.0015096;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,15:4,11:4,4 +chr10 30706505 . CT C 0 PASS DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:1,0:11,4 +chr10 30715886 . A G 0 PASS DP=26;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,2:2,5 +chr10 30824000 . G T 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:7,10:15,5 +chr10 32946749 . TG T 0 PASS DP=17;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1 +chr10 33043272 . T TATATACA 0 PASS DP=23;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:2,1:1,4 +chr10 33071607 . T G 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,3:14,2 +chr10 37040798 . G C 0 PASS DP=64;GPV=1;SPV=0.0023764;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,5:9,3 +chr10 37556436 . G C 0 PASS DP=71;GPV=1;SPV=0.00033391;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,3:14,8 +chr10 37632113 . GA G 0 PASS DP=51;GPV=1;SPV=0.00024945;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:7,10:5,8 +chr10 37748973 . A ATCTCTCTC 0 PASS DP=37;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2 +chr10 38180750 . A ATTT 0 PASS DP=42;GPV=1;SPV=0.094639;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:10,1:7,4 +chr10 38438433 . TAA T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:20,2:9,3 +chr10 38528669 . T C 0 PASS DP=475;GPV=1;SPV=0.0039538;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:263:218,45:100,21:118,24 +chr10 38652470 . T G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,1:16,3 +chr10 38665946 . G A 0 PASS DP=87;GPV=1;SPV=0.040315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:30,2:16,4 +chr10 38744008 . AAAT A 0 PASS DP=50;GPV=1;SPV=0.013242;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,5:6,2 +chr10 38745303 . AATG A 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,1:4,3 +chr10 38745316 . AATG A 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3 +chr10 38807919 . G C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1 +chr10 38807930 . ATTTGG A 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,2:13,2 +chr10 38949903 . G C 0 PASS DP=63;GPV=1;SPV=0.039588;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:12,4:17,1 +chr10 38966360 . C T 0 PASS DP=256;GPV=1;SPV=0.001569;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:118,26:60,7:58,19 +chr10 39156498 . G C 0 PASS DP=63;GPV=1;SPV=0.0039777;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:20,4:7,5 +chr10 40065992 . G T 0 PASS DP=677;GPV=1;SPV=0.0071518;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:361:312,37:167,19:145,18 +chr10 40073709 . C A 0 PASS DP=163;GPV=1;SPV=0.03677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:77,10:11,2:66,8 +chr10 40371463 . T G 0 PASS DP=33;GPV=1;SPV=0.015851;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,1:5,4 +chr10 40588767 . TC T 0 PASS DP=57;GPV=1;SPV=0.056683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:26,2:2,3 +chr10 40799584 . C G 0 PASS DP=34;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,2:7,5 +chr10 40935692 . G A 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4 +chr10 41509751 . G A 0 PASS DP=101;GPV=1;SPV=0.021605;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:50,10:27,8:23,2 +chr10 41531607 . A C 0 PASS DP=256;GPV=1;SPV=0.04229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:116,15:51,2:65,13 +chr10 41542758 . T C 0 PASS DP=243;GPV=1;SPV=0.032351;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:114,13:22,2:92,11 +chr10 41567788 . C T 0 PASS DP=113;GPV=1;SPV=0.008043;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:49,16:20,14:29,2 +chr10 41579978 . A G 0 PASS DP=50;GPV=1;SPV=0.030781;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:15,8:6,1 +chr10 41583893 . A G 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,3:3,2 +chr10 41589469 . G C 0 PASS DP=147;GPV=1;SPV=0.013577;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,17:48,12:14,5 +chr10 41730415 . G A 0 PASS DP=64;GPV=1;SPV=0.0046915;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:12,9:12,9 +chr10 41879225 . A C 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,3:14,5 +chr10 41904222 . A T 0 PASS DP=177;GPV=1;SPV=0.040458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:86,12:59,4:27,8 +chr10 41915238 . A G 0 PASS DP=117;GPV=1;SPV=0.019547;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:61,7:33,3:28,4 +chr10 42071375 . A T 0 PASS DP=1234;GPV=1;SPV=0.015828;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:715:629,77:2,2:627,75 +chr10 42130656 . A T 0 PASS DP=155;GPV=1;SPV=0.036978;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:68,17:37,9:31,8 +chr10 42841410 . G GA 0 PASS DP=23;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,6:4,2 +chr10 43107564 . C G 0 PASS DP=50;GPV=1;SPV=0.064915;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2 +chr10 43167921 . AGT A 0 PASS DP=63;GPV=1;SPV=0.018608;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,3:15,4 +chr10 43167929 . A ATAATAAT 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2 +chr10 44720733 . GA G 0 PASS DP=40;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,4:6,5 +chr10 45341228 . G A 0 PASS DP=64;GPV=1;SPV=0.004732;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:6,8:14,6 +chr10 45617591 . GA G 0 PASS DP=27;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:10,4:1,1 +chr10 45710864 . C T 0 PASS DP=66;GPV=1;SPV=0.0025336;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:12,11:12,8 +chr10 45749836 . A AAAAAAAAATATATAT 0 PASS DP=28;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:4,2:1,2 +chr10 45775938 . T C 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,3:8,3 +chr10 45836143 . T C 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,3:5,2 +chr10 45849479 . T G 0 PASS DP=51;GPV=1;SPV=0.060665;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,1:11,4 +chr10 45890429 . T C 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr10 45960209 . A C 0 PASS DP=36;GPV=1;SPV=0.0077158;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:10,9:4,1 +chr10 46337370 . A G 0 PASS DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:14,2:24,3 +chr10 47280793 . CAAAAA C 0 PASS DP=18;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,1:2,3 +chr10 47296068 . C T 0 PASS DP=46;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2 +chr10 49599548 . C A 0 PASS DP=65;GPV=1;SPV=0.0012065;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,4:13,5 +chr10 50186806 . A G 0 PASS DP=38;GPV=1;SPV=0.019737;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,1:6,7 +chr10 50722818 . C CTTT 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,5:4,3 +chr10 51349472 . G A 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr10 51480004 . C CA 0 PASS DP=60;GPV=1;SPV=0.0094816;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:13,8:13,11 +chr10 51542814 . G A 0 PASS DP=66;GPV=1;SPV=0.0053553;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:18,7:14,4 +chr10 52166827 . ATG A 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,1:6,4 +chr10 52244854 . T TAA 0 PASS DP=52;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,2:6,2 +chr10 52287706 . A T 0 PASS DP=31;GPV=1;SPV=0.12458;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:8,1:5,2 +chr10 54006161 . T C 0 PASS DP=50;GPV=1;SPV=0.0070897;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,7:8,6 +chr10 54389144 . GGAAAAA G 0 PASS DP=52;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:0,3:0,2:0,1 +chr10 54558235 . C A 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,7:12,3 +chr10 54853440 . CATAT C 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:15,2:4,3 +chr10 56175689 . A G 0 PASS DP=25;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,3:3,2:3,1 +chr10 57693902 . G A 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,2:5,2 +chr10 58139554 . T G 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,1:6,3 +chr10 58723476 . A C 0 PASS DP=70;GPV=1;SPV=0.00074243;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:17,5:12,7 +chr10 60469287 . G GTATA 0 PASS DP=54;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:0,2:0,1:0,1 +chr10 60469371 . A G 0 PASS DP=29;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:4,1:7,5 +chr10 61938883 . GA G 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,6:2,3 +chr10 63433586 . C T 0 PASS DP=52;GPV=1;SPV=0.26429;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:28,3:5,1 +chr10 63486152 . AAAAAAAAAAAAAAAAAC A 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,8:5,1 +chr10 64746619 . T C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,6:9,2 +chr10 65077424 . T A 0 PASS DP=52;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,2:0,2:0,0 +chr10 65372411 . G A 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,3:14,3 +chr10 65391347 . G A 0 PASS DP=30;GPV=1;SPV=0.020875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,4:5,5 +chr10 66024085 . A ATTTTTT 0 PASS DP=24;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,3:3,1 +chr10 66845708 . A AAAAAAAAAAAC 0 PASS DP=26;GPV=1;SPV=0.0047847;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:3,4:0,0 +chr10 66996649 . C CA 0 PASS DP=30;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:7,3:4,1 +chr10 67219498 . T A 0 PASS DP=75;GPV=1;SPV=0.0017936;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:11,3:17,5 +chr10 67854315 . A AAAAAAAT 0 PASS DP=20;GPV=1;SPV=0.040043;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,4:1,1 +chr10 68203710 . C T 0 PASS DP=59;GPV=1;SPV=0.2738;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:29,3:12,2 +chr10 68760880 . A C 0 PASS DP=54;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:0,0:1,2 +chr10 69283124 . C CA 0 PASS DP=29;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,4:3,3:5,1 +chr10 69632457 . CAAAAA C 0 PASS DP=36;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,9:4,6:8,3 +chr10 70133098 . AAGAGAGAGAGAG A 0 PASS DP=33;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,10:2,7:3,3 +chr10 70369605 . CAA C 0 PASS DP=27;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1 +chr10 70813920 . A T 0 PASS DP=49;GPV=1;SPV=0.015549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,5:6,5 +chr10 73006205 . T TAA 0 PASS DP=25;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:3,4:2,1 +chr10 74347106 . CAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,10:1,8:7,2 +chr10 74695615 . GT G 0 PASS DP=42;GPV=1;SPV=0.24484;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:20,1:6,3 +chr10 76616929 . CAT C 0 PASS DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:3,3:1,1 +chr10 76617080 . A ATAT 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,3:2,6 +chr10 78221462 . A ATGTGTGTG 0 PASS DP=51;GPV=1;SPV=0.014414;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,3:12,8 +chr10 78814818 . G T 0 PASS DP=86;GPV=1;SPV=0.055991;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,6:13,2:16,4 +chr10 79322195 . G A 0 PASS DP=66;GPV=1;SPV=0.0081036;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,3:11,3 +chr10 79806583 . T TTATATATATA 0 PASS DP=35;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,8:4,6:0,2 +chr10 79879029 . G A 0 PASS DP=64;GPV=1;SPV=0.00031521;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:11,9:14,5 +chr10 82132479 . GAT G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,5:8,3 +chr10 82694055 . T A 0 PASS DP=73;GPV=1;SPV=0.00029546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5 +chr10 82856756 . CA C 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:8,7:1,1 +chr10 83255151 . G A 0 PASS DP=40;GPV=1;SPV=0.0023885;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:7,12:4,5 +chr10 83635957 . T C 0 PASS DP=53;GPV=1;SPV=0.0031185;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:7,5:11,2 +chr10 83774421 . A C 0 PASS DP=69;GPV=1;SPV=0.0058487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:14,5:16,3 +chr10 84180135 . G A 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3 +chr10 85502876 . C CTT 0 PASS DP=28;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:2,3:4,1 +chr10 85930264 . A T 0 PASS DP=51;GPV=1;SPV=0.0099148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,5:8,3 +chr10 86491136 . CT C 0 PASS DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,9:3,1 +chr10 86645884 . C CT 0 PASS DP=28;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr10 86924514 . A AT 0 PASS DP=58;GPV=1;SPV=0.060727;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2 +chr10 88187197 . A T 0 PASS DP=33;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,4:2,1:4,3 +chr10 89997858 . C CTATCTATT 0 PASS DP=59;GPV=1;SPV=0.00011008;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,13:11,8:8,5 +chr10 90422967 . A T 0 PASS DP=62;GPV=1;SPV=0.00016659;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,2:8,9 +chr10 90614158 . C A 0 PASS DP=55;GPV=1;SPV=0.0079418;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,4:9,2 +chr10 92001971 . T C 0 PASS DP=26;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:1,1:6,1 +chr10 92331889 . G GTTTT 0 PASS DP=34;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,4:8,1:6,3 +chr10 92721325 . T A 0 PASS DP=53;GPV=1;SPV=0.011867;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:9,1:15,7 +chr10 93831288 . G C 0 PASS DP=36;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,4:1,3:3,1 +chr10 95066119 . T TGA 0 PASS DP=34;GPV=1;SPV=0.0059881;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:7,7:4,2 +chr10 95563605 . CA C 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:6,5:15,1 +chr10 96742764 . CCGTA C 0 PASS DP=72;GPV=1;SPV=0.0001697;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:19,6:8,7 +chr10 97125533 . C CAA 0 PASS DP=38;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:7,7:6,3 +chr10 98397877 . CT C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chr10 98961345 . G T 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr10 98997112 . C CTT 0 PASS DP=32;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:11,5:5,1 +chr10 99356580 . G A 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:19,1:3,3 +chr10 99953819 . A AAAAAAAAAAAAAAAG 0 PASS DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,2:7,3 +chr10 100822227 . G A 0 PASS DP=50;GPV=1;SPV=0.00081542;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,2:8,7 +chr10 101265768 . ATATTTTT A 0 PASS DP=28;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,2:0,1:5,1 +chr10 103129579 . T G 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2 +chr10 103909400 . ATATATATG A 0 PASS DP=43;GPV=1;SPV=0.29139;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,1:11,3 +chr10 104438348 . G GT 0 PASS DP=38;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:7,3:5,1 +chr10 105561145 . CG C 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3 +chr10 106277597 . T A 0 PASS DP=69;GPV=1;SPV=0.0016612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:9,3:18,6 +chr10 107044512 . T TA 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:7,7:1,3 +chr10 108848099 . A T 0 PASS DP=78;GPV=1;SPV=0.0030923;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:13,5:21,4 +chr10 109675736 . C T 0 PASS DP=52;GPV=1;SPV=7.3489e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:8,10:5,12 +chr10 110165018 . C CTAAA 0 PASS DP=64;GPV=1;SPV=0.0013413;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,3:15,10 +chr10 110284804 . T C 0 PASS DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:22,2:14,2 +chr10 111368317 . A G 0 PASS DP=49;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,5:12,1:10,4 +chr10 111407403 . C A 0 PASS DP=56;GPV=1;SPV=0.10049;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,2:17,4 +chr10 111666783 . G T 0 PASS DP=63;GPV=1;SPV=1.1241e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:8,12:12,7 +chr10 112265690 . T A 0 PASS DP=64;GPV=1;SPV=5.5695e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,6:10,4 +chr10 112300319 . G GAA 0 PASS DP=43;GPV=1;SPV=0.22206;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:20,3:6,1 +chr10 112546777 . G T 0 PASS DP=47;GPV=1;SPV=0.018613;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:17,4:5,4 +chr10 114638622 . TACACACACACAC T 0 PASS DP=44;GPV=1;SPV=0.097397;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:18,4:6,2 +chr10 115389500 . C CA 0 PASS DP=29;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:7,4:3,4 +chr10 117191994 . C A 0 PASS DP=41;GPV=1;SPV=0.03514;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,3:7,2 +chr10 117945508 . T C 0 PASS DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,2:7,3 +chr10 118716605 . C CTT 0 PASS DP=35;GPV=1;SPV=0.031249;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,6:9,2 +chr10 118798641 . A ATT 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,2:2,2 +chr10 119101623 . CTCCA C 0 PASS DP=51;GPV=1;SPV=0.036962;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4 +chr10 119101673 . G A 0 PASS DP=58;GPV=1;SPV=0.022365;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:20,4:8,3 +chr10 120354643 . CT C 0 PASS DP=25;GPV=1;SPV=0.0025519;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:3,9:1,1 +chr10 121090620 . CAAA C 0 PASS DP=27;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:3,6:1,3 +chr10 121781176 . T C 0 PASS DP=67;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,2:0,0 +chr10 122634430 . TTCTCTCTCTC T 0 PASS DP=23;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:4,1:1,3 +chr10 123072479 . A G 0 PASS DP=57;GPV=1;SPV=0.087179;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,5:9,4:4,1 +chr10 124932281 . AT A 0 PASS DP=25;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:4,4:3,1 +chr10 125352979 . A G 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:12,7:13,7 +chr10 125894156 . C T 0 PASS DP=106;GPV=1;SPV=0.023456;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:16,2:30,8 +chr10 126216045 . C G 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,4:15,6 +chr10 126221389 . CAA C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,7:2,3 +chr10 126251605 . GATGGATGC G 0 PASS DP=49;GPV=1;SPV=0.19313;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1 +chr10 126649667 . G T 0 PASS DP=62;GPV=1;SPV=0.00086088;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,4:13,6 +chr10 128924414 . A C 0 PASS DP=65;GPV=1;SPV=0.053114;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3 +chr10 128924425 . C CATCT 0 PASS DP=57;GPV=1;SPV=0.043835;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:7,2:15,2 +chr10 130222537 . A C 0 PASS DP=71;GPV=1;SPV=0.0013769;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5 +chr10 130226463 . A G 0 PASS DP=63;GPV=1;SPV=0.0015113;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:5,5:17,3 +chr10 130790561 . C T 0 PASS DP=60;GPV=1;SPV=0.13721;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:14,2:22,3 +chr10 130815854 . C G 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,3:9,3 +chr10 133644072 . G GA 0 PASS DP=145;GPV=1;SPV=0.0019294;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:64,19:31,6:33,13 +chr10 133657666 . G A 0 PASS DP=290;GPV=1;SPV=0.025772;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:124,27:52,11:72,16 +chr10 133660260 . G A 0 PASS DP=136;GPV=1;SPV=0.039804;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:64,12:31,10:33,2 +chr10 133770603 . G A 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2 +chr10 133770626 . A G 0 PASS DP=38;GPV=1;SPV=0.23659;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,4:11,1 +chr11 131580 . G A 0 PASS DP=58;GPV=1;SPV=0.028495;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,4:11,5 +chr11 172718 . A G 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,1:14,5 +chr11 897146 . C CA 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr11 2018276 . T G 0 PASS DP=74;GPV=1;SPV=0.00055309;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,4:16,7 +chr11 2233897 . A AT 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,1:6,5 +chr11 2233901 . T A 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr11 2285949 . A C 0 PASS DP=61;GPV=1;SPV=3.1411e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:10,6:8,7 +chr11 2749591 . C CCT 0 PASS DP=38;GPV=1;SPV=0.048755;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4 +chr11 2878233 . C CCTTT 0 PASS DP=21;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,5:3,1 +chr11 3094552 . T C 0 PASS DP=72;GPV=1;SPV=0.017945;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:12,4:14,5 +chr11 5202019 . A C 0 PASS DP=62;GPV=1;SPV=2.4825e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:6,4:12,9 +chr11 6435147 . C T 0 PASS DP=62;GPV=1;SPV=0.00065175;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:17,5:8,8 +chr11 6774952 . G A 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2 +chr11 8149017 . A G 0 PASS DP=45;GPV=1;SPV=0.021743;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,4:8,2 +chr11 8330531 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,3:7,2 +chr11 9880116 . T C 0 PASS DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,3:6,5 +chr11 10310625 . C CAG 0 PASS DP=38;GPV=1;SPV=0.13105;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,2:10,3 +chr11 10310678 . A AGAGAGAGC 0 PASS DP=30;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:11,1:2,4 +chr11 10562946 . C CT 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0 +chr11 11086280 . G C 0 PASS DP=69;GPV=1;SPV=3.274e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,5:9,10 +chr11 11923048 . A G 0 PASS DP=31;GPV=1;SPV=0.016783;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,6:1,2:2,4 +chr11 12564523 . T A 0 PASS DP=43;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:3,3:3,6 +chr11 15530642 . G T 0 PASS DP=58;GPV=1;SPV=0.0092761;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,4:8,1 +chr11 15639211 . A AAG 0 PASS DP=49;GPV=1;SPV=0.43134;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,2:12,2 +chr11 16479708 . AAACT A 0 PASS DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chr11 16479713 . G C 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chr11 16906224 . T TAGGA 0 PASS DP=46;GPV=1;SPV=0.046139;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:13,4:6,2 +chr11 18247346 . G A 0 PASS DP=65;GPV=1;SPV=0.0016408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:6,3:19,6 +chr11 18251982 . T C 0 PASS DP=20;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:1,1:5,1 +chr11 19351976 . A AGT 0 PASS DP=47;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,5:6,6 +chr11 20798970 . GATAAATACGGACAAAATTAAACCTAATGATAAACGTCATGGAAGAAA G 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3 +chr11 21192060 . C A 0 PASS DP=56;GPV=1;SPV=0.00034257;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,6:10,9 +chr11 21358565 . A ATTT 0 PASS DP=25;GPV=1;SPV=0.12308;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:2,6:3,1 +chr11 21403606 . CAA C 0 PASS DP=45;GPV=1;SPV=0.0015106;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:9,4:4,11 +chr11 21403609 . A C 0 PASS DP=47;GPV=1;SPV=0.0027281;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,4:6,10 +chr11 22269501 . G A 0 PASS DP=35;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,4:7,3:5,1 +chr11 22641298 . ATATC A 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,5:10,3 +chr11 24079271 . AAG A 0 PASS DP=49;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,6:8,1:10,5 +chr11 24388535 . A G 0 PASS DP=35;GPV=1;SPV=0.021839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:4,1:8,9 +chr11 24388935 . A G 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr11 24455988 . C G 0 PASS DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,4:10,6 +chr11 24984719 . G A 0 PASS DP=49;GPV=1;SPV=0.0024374;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:8,8:11,2 +chr11 25804733 . T A 0 PASS DP=52;GPV=1;SPV=1.7307e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:2,5:12,10 +chr11 26016983 . GAA G 0 PASS DP=33;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,8:4,3 +chr11 27436375 . G A 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,1:4,3 +chr11 27439901 . C T 0 PASS DP=32;GPV=1;SPV=0.0063246;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:5,5:0,3 +chr11 27731810 . T C 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:11,4:17,5 +chr11 28181258 . A T 0 PASS DP=56;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:16,3:11,1 +chr11 28312566 . T C 0 PASS DP=57;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,0:0,2 +chr11 28455216 . CTTT C 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,5:2,2 +chr11 28799096 . T A 0 PASS DP=68;GPV=1;SPV=0.0065944;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,3:17,7 +chr11 29145810 . A AAAAAAAAAAAAAAAGG 0 PASS DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr11 29504566 . C T 0 PASS DP=21;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,6:0,2:0,4 +chr11 30945750 . G A 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:4,2:18,3 +chr11 31518494 . A AT 0 PASS DP=33;GPV=1;SPV=0.029832;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,4:5,4 +chr11 32498387 . G GTCTTTCTT 0 PASS DP=63;GPV=1;SPV=0.038499;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,3:16,5 +chr11 33118747 . TA T 0 PASS DP=62;GPV=1;SPV=0.006003;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:10,12:15,12 +chr11 33154486 . ACTTT A 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1 +chr11 34194702 . G C 0 PASS DP=53;GPV=1;SPV=0.0063293;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:8,4:15,5 +chr11 34520476 . C CT 0 PASS DP=28;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:2,3:5,5 +chr11 35002384 . CT C 0 PASS DP=29;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:2,5:4,2 +chr11 35419998 . G C 0 PASS DP=83;GPV=1;SPV=3.7727e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:13,13:15,5 +chr11 35827781 . T TAATAATAATAATAATAAA 0 PASS DP=26;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,3:9,2:2,1 +chr11 36128154 . ATTAAAC A 0 PASS DP=37;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,4:7,1 +chr11 37099828 . C T 0 PASS DP=26;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,1:4,3 +chr11 37099830 . T C 0 PASS DP=29;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,1:3,4 +chr11 37190545 . AAGAGAGAG A 0 PASS DP=25;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1 +chr11 37348286 . A G 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3 +chr11 37534487 . GTT G 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr11 39574939 . GTA G 0 PASS DP=49;GPV=1;SPV=0.034924;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3 +chr11 39612074 . CA C 0 PASS DP=41;GPV=1;SPV=0.00072552;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:8,7:2,5 +chr11 40381954 . G GTT 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr11 41093927 . C CA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr11 41938402 . G A 0 PASS DP=60;GPV=1;SPV=0.014707;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,4:12,2 +chr11 41959443 . A ATATATATCTATCTATC 0 PASS DP=57;GPV=1;SPV=0.0025738;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:9,3:7,3 +chr11 42383876 . TA T 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:17,2:14,2 +chr11 43705751 . CCT C 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,5:1,3 +chr11 44065496 . CT C 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,5:4,1 +chr11 44663344 . G C 0 PASS DP=39;GPV=1;SPV=0.083396;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:8,1:12,5 +chr11 44700701 . G A 0 PASS DP=37;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:8,2:11,2 +chr11 44943603 . C G 0 PASS DP=79;GPV=1;SPV=4.2642e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:14,13:15,2 +chr11 46169560 . AAAAGAAAG A 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:12,9:2,3 +chr11 46328664 . G A 0 PASS DP=45;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,4:3,2:6,2 +chr11 47250805 . A G 0 PASS DP=64;GPV=1;SPV=2.0361e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:13,8:7,7 +chr11 47488306 . A T 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1 +chr11 47765374 . A AAAAAGAAAAGAAAAG 0 PASS DP=42;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:3,1:6,5 +chr11 48571931 . C CT 0 PASS DP=48;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,4:12,2:4,2 +chr11 49406779 . GTATATATATATATATATATATCTGTA G 0 PASS DP=43;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,4:4,2:1,2 +chr11 49803343 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,9:1,7:1,2 +chr11 49859015 . C CAAAA 0 PASS DP=27;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:3,7:2,1 +chr11 49885040 . A ATTTCTTTC 0 PASS DP=51;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,4:1,2:16,2 +chr11 51157750 . A C 0 PASS DP=91;GPV=1;SPV=0.011806;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:17,4:24,6 +chr11 51248292 . C G 0 PASS DP=73;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:15,7:14,4 +chr11 51911615 . G A 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,1:19,3 +chr11 52146099 . C A 0 PASS DP=178;GPV=1;SPV=0.017156;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:90,16:75,14:15,2 +chr11 52284240 . T A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:7,1:16,3 +chr11 52341887 . G A 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,5:1,1 +chr11 52495354 . C A 0 PASS DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:27,1:6,4 +chr11 52739176 . A C 0 PASS DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:21,3:11,1 +chr11 53141533 . G C 0 PASS DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,2:8,4 +chr11 53563809 . A T 0 PASS DP=59;GPV=1;SPV=0.060214;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:21,1:5,3 +chr11 54269194 . T A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr11 54371781 . T C 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:12,5:0,1 +chr11 54401653 . C G 0 PASS DP=36;GPV=1;SPV=0.2538;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,1:13,3 +chr11 54410525 . C T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3 +chr11 54412246 . A G 0 PASS DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:15,11:1,1 +chr11 54414499 . G A 0 PASS DP=74;GPV=1;SPV=0.02311;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,4:11,5 +chr11 55403395 . A T 0 PASS DP=30;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,6:1,3:0,3 +chr11 55403571 . C CTTTGCTTACTTTGACA 0 PASS DP=32;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,8:8,2 +chr11 55403572 . C A 0 PASS DP=34;GPV=1;SPV=0.023692;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:3,9:8,1 +chr11 55639158 . A T 0 PASS DP=64;GPV=1;SPV=0.0063358;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,2:13,4 +chr11 55765156 . A T 0 PASS DP=39;GPV=1;SPV=0.019042;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,8:6,2 +chr11 56497195 . G A 0 PASS DP=77;GPV=1;SPV=0.012401;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:24,2:14,6 +chr11 56756712 . G A 0 PASS DP=42;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,2:7,2:0,0 +chr11 56759810 . A C 0 PASS DP=67;GPV=1;SPV=0.025141;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:13,8:12,1 +chr11 57515518 . G A 0 PASS DP=87;GPV=1;SPV=0.00035161;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:40,16:19,8:21,8 +chr11 57558174 . G T 0 PASS DP=70;GPV=1;SPV=0.020953;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:24,8:14,1 +chr11 57918856 . A C 0 PASS DP=27;GPV=1;SPV=0.011037;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:4,3:1,3 +chr11 57996477 . T C 0 PASS DP=48;GPV=1;SPV=0.042491;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,6:10,1 +chr11 58008340 . G GT 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr11 58677727 . TCATC T 0 PASS DP=39;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:2,1:3,1 +chr11 59195438 . A T 0 PASS DP=60;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,1:0,1 +chr11 60950325 . C T 0 PASS DP=81;GPV=1;SPV=0.0011003;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:17,5:18,6 +chr11 61601275 . G A 0 PASS DP=81;GPV=1;SPV=0.0017165;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:16,4:22,8 +chr11 63177856 . A G 0 PASS DP=27;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,2:0,0 +chr11 63177859 . TATATA T 0 PASS DP=27;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,2:1,2:0,0 +chr11 63382288 . T G 0 PASS DP=46;GPV=1;SPV=0.00078184;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,4:9,8 +chr11 63500547 . G C 0 PASS DP=67;GPV=1;SPV=0.00026014;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:8,5:14,5 +chr11 63860485 . G A 0 PASS DP=55;GPV=1;SPV=0.00031973;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:8,8:12,6 +chr11 64582170 . CTCA C 0 PASS DP=33;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,1:8,3 +chr11 65843220 . CAA C 0 PASS DP=42;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:5,9:2,3 +chr11 68000043 . G A 0 PASS DP=66;GPV=1;SPV=0.0040978;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,3:12,5 +chr11 68870443 . AAG A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr11 69351971 . G A 0 PASS DP=65;GPV=1;SPV=0.04647;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:16,3:18,3 +chr11 71135483 . T G 0 PASS DP=35;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,3:3,2:2,1 +chr11 72079109 . C T 0 PASS DP=70;GPV=1;SPV=0.00040558;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:16,9:13,5 +chr11 75318174 . T A 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,2:7,3 +chr11 75821122 . C T 0 PASS DP=61;GPV=1;SPV=5.2903e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:12,5:7,8 +chr11 76103537 . G GT 0 PASS DP=45;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,4:8,3 +chr11 76602194 . A T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:16,6:13,5 +chr11 77479602 . CT C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,3:2,2 +chr11 77617367 . C CAA 0 PASS DP=37;GPV=1;SPV=0.43846;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:7,5:10,1 +chr11 77646783 . A C 0 PASS DP=43;GPV=1;SPV=0.030474;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,5:8,4 +chr11 78160253 . C T 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2 +chr11 79150786 . G T 0 PASS DP=69;GPV=1;SPV=1.7558e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,3:6,10 +chr11 79164083 . T A 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:2,3:8,2 +chr11 79337046 . A C 0 PASS DP=69;GPV=1;SPV=0.0061819;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:7,5:25,4 +chr11 80400038 . T A 0 PASS DP=53;GPV=1;SPV=0.0007584;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:11,7:6,12 +chr11 82380028 . G T 0 PASS DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:5,3:15,3 +chr11 84408706 . C A 0 PASS DP=57;GPV=1;SPV=0.014243;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,4:12,4 +chr11 84434118 . C CA 0 PASS DP=39;GPV=1;SPV=0.019899;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:9,5:5,1 +chr11 85500561 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:3,2:0,0 +chr11 85862285 . G C 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,7:11,3 +chr11 86139968 . C G 0 PASS DP=64;GPV=1;SPV=0.00019835;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4 +chr11 86307577 . C A 0 PASS DP=91;GPV=1;SPV=0.041764;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:15,8:22,5 +chr11 86496410 . G C 0 PASS DP=63;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:2,1:5,1 +chr11 87189112 . T C 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3 +chr11 87690200 . T TA 0 PASS DP=25;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:0,1:3,1 +chr11 87690207 . A AAT 0 PASS DP=26;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,3:1,2:2,1 +chr11 88251411 . G GTA 0 PASS DP=50;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,14:12,7:6,7 +chr11 89778365 . A G 0 PASS DP=78;GPV=1;SPV=0.010773;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:35,19:17,4:18,15 +chr11 90096787 . C G 0 PASS DP=31;GPV=1;SPV=0.019162;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,5:8,2 +chr11 90495498 . T A 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:2,2:6,9 +chr11 90855626 . A T 0 PASS DP=37;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,2:5,1:1,1 +chr11 91278918 . G A 0 PASS DP=63;GPV=1;SPV=1.2971e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:13,7:7,11 +chr11 91651351 . T A 0 PASS DP=60;GPV=1;SPV=0.013929;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:17,5:10,2 +chr11 91821128 . G A 0 PASS DP=57;GPV=1;SPV=0.0021435;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:8,5:15,5 +chr11 96978545 . GTCTGTCTA G 0 PASS DP=56;GPV=1;SPV=0.00010656;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,8:8,6 +chr11 97056518 . G C 0 PASS DP=71;GPV=1;SPV=0.0006295;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,8:14,5 +chr11 98285550 . GAAA G 0 PASS DP=30;GPV=1;SPV=0.0021323;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,8:2,2 +chr11 98917076 . A AAAAGG 0 PASS DP=33;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:5,4:8,4 +chr11 99433372 . T A 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1 +chr11 99747460 . C CTT 0 PASS DP=33;GPV=1;SPV=0.30914;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr11 99966592 . C A 0 PASS DP=62;GPV=1;SPV=0.00027813;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,7:12,6 +chr11 100610603 . T TAAA 0 PASS DP=46;GPV=1;SPV=0.0022326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,14:6,8:7,6 +chr11 100802424 . C CT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1 +chr11 100891439 . CT C 0 PASS DP=34;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,9:2,5:2,4 +chr11 101100605 . C CCACA 0 PASS DP=47;GPV=1;SPV=0.006848;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5 +chr11 102512185 . C T 0 PASS DP=57;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,4:3,2:2,2 +chr11 102919535 . C CT 0 PASS DP=20;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:1,7:2,1 +chr11 103568084 . A G 0 PASS DP=47;GPV=1;SPV=0.027878;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,4:8,5 +chr11 103875221 . C G 0 PASS DP=47;GPV=1;SPV=0.025087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:15,4:8,4 +chr11 105540750 . G C 0 PASS DP=69;GPV=1;SPV=0.011697;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,2:18,5 +chr11 106418553 . G A 0 PASS DP=50;GPV=1;SPV=0.0018599;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,5:9,7 +chr11 106698539 . A C 0 PASS DP=66;GPV=1;SPV=0.0040737;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:24,7:9,8 +chr11 107816288 . C CT 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1 +chr11 110307048 . C G 0 PASS DP=65;GPV=1;SPV=0.046286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:12,4:24,3 +chr11 110388783 . C T 0 PASS DP=64;GPV=1;SPV=0.0042329;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:6,4:18,3 +chr11 112871174 . C G 0 PASS DP=47;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,5:2,4:3,1 +chr11 113980141 . C A 0 PASS DP=75;GPV=1;SPV=0.0015657;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:20,7:13,4 +chr11 114330231 . C T 0 PASS DP=36;GPV=1;SPV=0.0077158;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,7:8,3 +chr11 114786893 . G A 0 PASS DP=74;GPV=1;SPV=0.00024383;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,7:15,6 +chr11 114948253 . GT G 0 PASS DP=20;GPV=1;SPV=0.001548;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2 +chr11 115053884 . A AATGG 0 PASS DP=47;GPV=1;SPV=0.0014606;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,10:8,4 +chr11 115694770 . C G 0 PASS DP=66;GPV=1;SPV=0.0017887;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:15,8:15,5 +chr11 116434916 . C CTGTGTGTGTG 0 PASS DP=42;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:7,6:5,1 +chr11 116673394 . T TATTTA 0 PASS DP=39;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:9,2:8,2 +chr11 117473268 . G A 0 PASS DP=65;GPV=1;SPV=0.00032976;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,8:13,5 +chr11 117515713 . C G 0 PASS DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:4,5:10,3 +chr11 118246585 . C CT 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,5:8,1 +chr11 118888521 . G T 0 PASS DP=54;GPV=1;SPV=0.01745;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,3:14,5 +chr11 118975509 . C T 0 PASS DP=54;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:3,1:2,1 +chr11 119805179 . G A 0 PASS DP=56;GPV=1;SPV=0.0041454;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,2:12,4 +chr11 119848761 . C CA 0 PASS DP=40;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:9,3:8,1 +chr11 121865084 . A ATT 0 PASS DP=36;GPV=1;SPV=0.02043;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:10,3:5,4 +chr11 122837751 . G A 0 PASS DP=37;GPV=1;SPV=0.3193;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,6:7,3:4,3 +chr11 124885580 . G GTTT 0 PASS DP=46;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:7,5:7,4 +chr11 125346787 . C CAGGAAGGGAGGA 0 PASS DP=50;GPV=1;SPV=0.01594;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,7:10,5 +chr11 125726507 . A G 0 PASS DP=32;GPV=1;SPV=0.0023569;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,9:6,1 +chr11 126551652 . C CT 0 PASS DP=39;GPV=1;SPV=0.0079902;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,14:8,10:4,4 +chr11 129485119 . C T 0 PASS DP=74;GPV=1;SPV=3.7374e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:13,7:11,12 +chr11 129518147 . T TAAAA 0 PASS DP=37;GPV=1;SPV=0.0092505;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:4,4:6,1 +chr11 130091211 . C G 0 PASS DP=52;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:10,5:13,3 +chr11 130091323 . A C 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,1:17,3 +chr11 130501444 . G A 0 PASS DP=64;GPV=1;SPV=0.00025408;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:11,9:12,3 +chr11 131337917 . G C 0 PASS DP=54;GPV=1;SPV=8.8691e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,4:7,8 +chr11 131566736 . C A 0 PASS DP=70;GPV=1;SPV=0.0004313;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,4:10,5 +chr11 131873625 . A G 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,3:6,6 +chr11 132275701 . T C 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,3:10,3 +chr11 132867624 . C A 0 PASS DP=41;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,2:9,5 +chr11 133021718 . G C 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3 +chr11 133231910 . AAATGGACACATGATGTAAAAGGCTTAGGATCCTACAAGGAAGGGC A 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2 +chr11 133538191 . C CT 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2 +chr11 134344730 . C G 0 PASS DP=95;GPV=1;SPV=0.038105;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:26,6:22,3 +chr11 134454134 . G GT 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,3:21,1 +chr12 11409 . G T 0 PASS DP=166;GPV=1;SPV=0.028618;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:26,3:49,13 +chr12 13514 . C T 0 PASS DP=225;GPV=1;SPV=0.036054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:99,17:49,11:50,6 +chr12 187635 . A C 0 PASS DP=24;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,7:1,2:1,5 +chr12 580598 . A T 0 PASS DP=56;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,4:10,2:8,2 +chr12 964966 . C G 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:9,2:23,3 +chr12 1121638 . A G 0 PASS DP=38;GPV=1;SPV=0.024893;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,1:8,9 +chr12 1259506 . C CTCTT 0 PASS DP=29;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,2:6,2 +chr12 1484165 . C T 0 PASS DP=44;GPV=1;SPV=0.0095299;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,9:7,5 +chr12 1958016 . A AAT 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr12 2790464 . A T 0 PASS DP=65;GPV=1;SPV=0.0025828;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,5:12,6 +chr12 2835159 . A ATGTG 0 PASS DP=47;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:12,5:3,3 +chr12 2842204 . G A 0 PASS DP=33;GPV=1;SPV=0.0012781;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:4,5:3,8 +chr12 2883511 . ATTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,7:1,2:0,5 +chr12 3023790 . C CAA 0 PASS DP=41;GPV=1;SPV=0.12406;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:3,9:5,1 +chr12 4482205 . A T 0 PASS DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr12 4835134 . A AT 0 PASS DP=40;GPV=1;SPV=0.0046097;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,13:4,11:11,2 +chr12 5923185 . T C 0 PASS DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:8,6:6,2 +chr12 6379933 . CAA C 0 PASS DP=35;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,4:3,3 +chr12 7300160 . C CA 0 PASS DP=32;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:4,5:3,5 +chr12 8184805 . G A 0 PASS DP=65;GPV=1;SPV=0.018137;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,10:8,2 +chr12 8310981 . G A 0 PASS DP=60;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,3:11,3 +chr12 8397545 . G T 0 PASS DP=85;GPV=1;SPV=0.03877;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:17,9:21,5 +chr12 8983395 . C CT 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,8:6,1 +chr12 9295114 . C T 0 PASS DP=63;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,2:8,4 +chr12 9296551 . G A 0 PASS DP=81;GPV=1;SPV=0.039229;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:9,7:29,1 +chr12 9311675 . C CGTT 0 PASS DP=77;GPV=1;SPV=0.049696;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,6:17,1:14,5 +chr12 9429685 . C T 0 PASS DP=88;GPV=1;SPV=0.087152;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:56,7:31,4:25,3 +chr12 11957489 . AAAAC A 0 PASS DP=43;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:9,2:11,2 +chr12 13469811 . C A 0 PASS DP=52;GPV=1;SPV=0.0012661;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:5,4:14,6 +chr12 13999732 . C CT 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:4,3:1,1 +chr12 14321198 . A G 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,6:7,2 +chr12 14745345 . C CA 0 PASS DP=39;GPV=1;SPV=0.0024472;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:7,4:1,3 +chr12 16204381 . C T 0 PASS DP=50;GPV=1;SPV=0.0012775;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,4:11,6 +chr12 16341133 . CAT C 0 PASS DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,2:13,2 +chr12 17063515 . TTTCTTTCTTTC T 0 PASS DP=30;GPV=1;SPV=0.0084291;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,1:6,5 +chr12 17346228 . CA C 0 PASS DP=25;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:2,6:1,1 +chr12 17506656 . G A 0 PASS DP=60;GPV=1;SPV=0.0017392;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:16,4:8,6 +chr12 19197676 . CTG C 0 PASS DP=36;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,7:6,5:6,2 +chr12 20112787 . G GT 0 PASS DP=50;GPV=1;SPV=0.012665;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,4:9,2 +chr12 20400379 . GTTTTTTTTTTTTTTTTTT G 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,5:6,1 +chr12 21933091 . G A 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,7:7,1 +chr12 23068157 . T C 0 PASS DP=35;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:2,3:3,2 +chr12 23086073 . G A 0 PASS DP=25;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,3:1,2:0,1 +chr12 23807642 . A ATT 0 PASS DP=44;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:15,7:1,3 +chr12 23971530 . A AATATAT 0 PASS DP=46;GPV=1;SPV=0.0065711;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,9:6,3 +chr12 24811355 . C G 0 PASS DP=58;GPV=1;SPV=0.0022392;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,5:8,3 +chr12 24955965 . C CTTTTTTTTT 0 PASS DP=21;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,6:1,5:0,1 +chr12 25015163 . T C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr12 25174553 . T C 0 PASS DP=45;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:13,2:5,8 +chr12 25487810 . G GCT 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr12 25591811 . C CAGAGAG 0 PASS DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,6:5,1 +chr12 26308736 . C T 0 PASS DP=34;GPV=1;SPV=0.015698;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,3:4,2 +chr12 28758041 . T C 0 PASS DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:16,3:12,2 +chr12 29253263 . A T 0 PASS DP=52;GPV=1;SPV=0.15731;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,3:18,2:7,1 +chr12 29960382 . GT G 0 PASS DP=44;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,3:8,4 +chr12 31094748 . T C 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:11,2:23,3 +chr12 31606167 . T C 0 PASS DP=57;GPV=1;SPV=0.014699;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:12,10:10,5 +chr12 32033307 . C A 0 PASS DP=45;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,4:7,1:9,3 +chr12 32393794 . CA C 0 PASS DP=30;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,6:2,1 +chr12 32407121 . ATT A 0 PASS DP=29;GPV=1;SPV=0.00091984;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,8:1,3 +chr12 32432051 . ATTTTTTTTTTT A 0 PASS DP=23;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:2,1:0,5 +chr12 33886040 . T TATA 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr12 33996063 . T C 0 PASS DP=101;GPV=1;SPV=0.038868;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:26,5:15,5 +chr12 33996090 . T C 0 PASS DP=102;GPV=1;SPV=0.0015714;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,16:23,9:14,7 +chr12 34343706 . G A 0 PASS DP=72;GPV=1;SPV=0.00055843;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,9:14,5 +chr12 34896723 . G T 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:2,0:31,4 +chr12 34907276 . A AC 0 PASS DP=49;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:0,3:19,1 +chr12 34946259 . C A 0 PASS DP=77;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,1:20,3 +chr12 34993583 . T C 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,0:27,4 +chr12 35105084 . G C 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,1:5,7 +chr12 35171982 . C A 0 PASS DP=76;GPV=1;SPV=0.047637;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,9:12,2 +chr12 35235849 . C G 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4 +chr12 35286257 . G T 0 PASS DP=158;GPV=1;SPV=0.027638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:69,13:53,11:16,2 +chr12 35560028 . G T 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,2:19,2 +chr12 35577468 . G A 0 PASS DP=80;GPV=1;SPV=0.052006;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:35,4:0,0 +chr12 35655158 . C G 0 PASS DP=68;GPV=1;SPV=0.029808;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:4,2:29,4 +chr12 35682353 . T A 0 PASS DP=94;GPV=1;SPV=0.0031482;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:22,5:14,2 +chr12 35759260 . C A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,4:2,0 +chr12 35801570 . C G 0 PASS DP=109;GPV=1;SPV=0.043079;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:6,2:39,10 +chr12 35964280 . C T 0 PASS DP=168;GPV=1;SPV=0.02841;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:73,17:62,13:11,4 +chr12 36080780 . G A 0 PASS DP=65;GPV=1;SPV=0.0015009;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:6,1:13,8 +chr12 36151977 . G T 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1 +chr12 36469140 . G T 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:1,0:32,4 +chr12 36469188 . T A 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:0,0:30,4 +chr12 36518398 . G A 0 PASS DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,2:9,5 +chr12 36674609 . A T 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,3:7,1 +chr12 36674944 . C A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,0:16,4 +chr12 36959746 . G T 0 PASS DP=49;GPV=1;SPV=0.052652;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:7,1:18,5 +chr12 37014517 . A T 0 PASS DP=167;GPV=1;SPV=0.049161;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:92,12:66,4:26,8 +chr12 37239948 . GA G 0 PASS DP=61;GPV=1;SPV=0.01632;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,4:9,2 +chr12 37455881 . C G 0 PASS DP=88;GPV=1;SPV=0.044228;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:15,7:16,1 +chr12 37656089 . C G 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,2:12,3 +chr12 37784945 . AC A 0 PASS DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr12 38058859 . CTTTCTT C 0 PASS DP=34;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:2,2:12,2 +chr12 38453032 . A G 0 PASS DP=63;GPV=1;SPV=0.00032936;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:12,10:13,5 +chr12 38538884 . GTGA G 0 PASS DP=44;GPV=1;SPV=0.027067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,8:8,3 +chr12 38538890 . C CATATAAAGAAGTTAAGAAG 0 PASS DP=44;GPV=1;SPV=0.0080824;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,11:9,8:9,3 +chr12 38636228 . A AT 0 PASS DP=48;GPV=1;SPV=0.0063848;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,16:11,11:6,5 +chr12 38973727 . T A 0 PASS DP=57;GPV=1;SPV=0.0078484;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,3:18,6 +chr12 39398849 . T C 0 PASS DP=62;GPV=1;SPV=1.4853e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:12,7:7,9 +chr12 40707247 . T C 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,2:12,7 +chr12 40999697 . CT C 0 PASS DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,7:4,2 +chr12 42499725 . A AATTT 0 PASS DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,4:5,6 +chr12 42635112 . CAAAAAAAAAA C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr12 42966839 . C T 0 PASS DP=56;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,7:7,2:6,5 +chr12 43419885 . A C 0 PASS DP=66;GPV=1;SPV=0.00043872;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7 +chr12 44311831 . G GTA 0 PASS DP=54;GPV=1;SPV=0.0072523;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,6:16,3 +chr12 44488909 . C CT 0 PASS DP=28;GPV=1;SPV=0.0033344;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,7:2,3 +chr12 45899695 . TTA T 0 PASS DP=29;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,2:5,4 +chr12 46089197 . C CTTCTTTCT 0 PASS DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr12 47261948 . TG T 0 PASS DP=68;GPV=1;SPV=0.055233;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:21,3:13,2 +chr12 48172711 . T C 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,3:6,2 +chr12 50643045 . A T 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,3:17,1 +chr12 50643405 . CTGTG C 0 PASS DP=35;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:4,9:7,2 +chr12 50872835 . AT A 0 PASS DP=45;GPV=1;SPV=0.068288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:10,2:6,1 +chr12 51248436 . T A 0 PASS DP=40;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:2,4:0,3:2,1 +chr12 51522310 . T G 0 PASS DP=68;GPV=1;SPV=0.033568;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,6:17,4 +chr12 52002135 . C CA 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr12 55266757 . A AT 0 PASS DP=55;GPV=1;SPV=0.041136;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,6:13,1 +chr12 55930357 . G GT 0 PASS DP=24;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,3:3,2 +chr12 56640232 . T A 0 PASS DP=49;GPV=1;SPV=0.0098129;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,4:10,5 +chr12 56776304 . C CT 0 PASS DP=30;GPV=1;SPV=0.0019317;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:5,7:1,5 +chr12 57711038 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:1,7:5,1 +chr12 57795072 . C CATAT 0 PASS DP=41;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:8,5:10,4 +chr12 61106700 . C G 0 PASS DP=86;GPV=1;SPV=0.0022245;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:22,3:12,5 +chr12 62938722 . C CA 0 PASS DP=30;GPV=1;SPV=0.0084281;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:5,4:0,0 +chr12 63438244 . C T 0 PASS DP=44;GPV=1;SPV=0.0090318;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,4:4,3 +chr12 63464165 . A G 0 PASS DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,2:9,4 +chr12 63949081 . T A 0 PASS DP=53;GPV=1;SPV=0.0045492;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,6:10,3 +chr12 64356180 . A C 0 PASS DP=51;GPV=1;SPV=0.10901;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:17,4:14,3 +chr12 64540990 . AT A 0 PASS DP=34;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:0,1:11,6 +chr12 64955122 . G C 0 PASS DP=62;GPV=1;SPV=4.5066e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,4:7,9 +chr12 64983618 . C T 0 PASS DP=23;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,2:7,2 +chr12 66227761 . CA C 0 PASS DP=32;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:12,5:2,2 +chr12 68111401 . CA C 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:13,3:2,2 +chr12 68331423 . C G 0 PASS DP=66;GPV=1;SPV=3.4893e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,6:12,9 +chr12 68616438 . ATT A 0 PASS DP=38;GPV=1;SPV=0.063892;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:12,6:7,1 +chr12 69595688 . C CA 0 PASS DP=41;GPV=1;SPV=0.013514;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,6:4,1 +chr12 69817653 . T TACACAC 0 PASS DP=37;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:5,7:4,3 +chr12 71193861 . TA T 0 PASS DP=69;GPV=1;SPV=3.8197e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,10:11,3 +chr12 71877499 . C T 0 PASS DP=30;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,3:3,1:1,2 +chr12 72716379 . C A 0 PASS DP=59;GPV=1;SPV=0.00031881;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3 +chr12 73715082 . A AAAAAAAATATAT 0 PASS DP=30;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:2,4:1,3 +chr12 73883284 . T C 0 PASS DP=63;GPV=1;SPV=0.0016051;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,3:11,4 +chr12 74714924 . C CT 0 PASS DP=32;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,3:5,6 +chr12 75507756 . C T 0 PASS DP=67;GPV=1;SPV=0.0001004;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:6,4:15,7 +chr12 75905157 . A ATT 0 PASS DP=31;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:13,5:3,1 +chr12 75993190 . A C 0 PASS DP=54;GPV=1;SPV=0.15872;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,4:15,1 +chr12 75999073 . C CT 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3 +chr12 76499350 . C CT 0 PASS DP=46;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:5,2:12,3 +chr12 76953803 . C A 0 PASS DP=46;GPV=1;SPV=0.023923;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:2,16:2,13:0,3 +chr12 79392798 . C CT 0 PASS DP=20;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,3:3,2 +chr12 79410506 . CA C 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:1,4:3,1 +chr12 80462715 . C T 0 PASS DP=56;GPV=1;SPV=0.031485;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,1:14,9 +chr12 80514402 . A ACACACACACTCTCT 0 PASS DP=38;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,4:7,3 +chr12 82538752 . A T 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1 +chr12 83337241 . A G 0 PASS DP=37;GPV=1;SPV=0.22807;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,4:5,2:6,2 +chr12 83506267 . A AT 0 PASS DP=39;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr12 83518298 . C T 0 PASS DP=63;GPV=1;SPV=0.0011889;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,2:9,5 +chr12 83749058 . A AACACACACACAC 0 PASS DP=37;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:10,4:6,2 +chr12 83964438 . A C 0 PASS DP=62;GPV=1;SPV=0.0048152;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,3:9,3 +chr12 84185099 . A T 0 PASS DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,2:11,6 +chr12 84301493 . G A 0 PASS DP=56;GPV=1;SPV=4.0736e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:6,9:6,9 +chr12 84393961 . C A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,1:5,3 +chr12 84615985 . TAC T 0 PASS DP=30;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:5,2:5,2 +chr12 86441639 . T A 0 PASS DP=56;GPV=1;SPV=0.0051557;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:18,4:7,6 +chr12 87007903 . A T 0 PASS DP=56;GPV=1;SPV=0.028995;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:13,4:15,3 +chr12 87774931 . T A 0 PASS DP=56;GPV=1;SPV=0.0028652;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:11,5:14,8 +chr12 88365088 . G T 0 PASS DP=42;GPV=1;SPV=0.020419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,7:10,3 +chr12 88992260 . ATAT A 0 PASS DP=53;GPV=1;SPV=0.043711;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,4:10,4 +chr12 89324028 . T A 0 PASS DP=55;GPV=1;SPV=0.093231;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,7:9,2:7,5 +chr12 91106690 . T TAAA 0 PASS DP=22;GPV=1;SPV=0.0023454;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,4:1,2 +chr12 91851986 . T TGATAG 0 PASS DP=39;GPV=1;SPV=0.036036;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:4,2:9,2 +chr12 93017161 . CTT C 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr12 93729785 . C CA 0 PASS DP=46;GPV=1;SPV=0.022983;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,14:11,9:6,5 +chr12 94759340 . ATT A 0 PASS DP=28;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:2,2:2,7 +chr12 95813784 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr12 96199480 . C CTG 0 PASS DP=48;GPV=1;SPV=0.0025584;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,10:8,7:0,3 +chr12 98327081 . A AGTGTGTGT 0 PASS DP=31;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,7:4,6:1,1 +chr12 98475036 . GACACACACACACACACACAC G 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:3,3:0,3 +chr12 98555416 . C CTTTTTTTTTTT 0 PASS DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,6:1,1 +chr12 99730324 . T C 0 PASS DP=68;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:20,4:8,2:12,2 +chr12 99897852 . TA T 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2 +chr12 101451303 . G GTTTTT 0 PASS DP=24;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,6:1,4:0,2 +chr12 101591855 . T C 0 PASS DP=48;GPV=1;SPV=0.11761;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,1:21,4 +chr12 102996453 . A T 0 PASS DP=48;GPV=1;SPV=0.0082367;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3 +chr12 103385770 . A G 0 PASS DP=51;GPV=1;SPV=0.001027;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,4:8,5 +chr12 103460284 . G A 0 PASS DP=49;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,2:3,1:2,1 +chr12 103716625 . A C 0 PASS DP=68;GPV=1;SPV=0.00076721;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:12,5:16,7 +chr12 105186673 . TG T 0 PASS DP=49;GPV=1;SPV=0.18481;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:10,1:18,3 +chr12 105186676 . T TCG 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,1:19,3 +chr12 105876519 . TAAAA T 0 PASS DP=26;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:5,5:1,1 +chr12 105991252 . CTT C 0 PASS DP=24;GPV=1;SPV=0.0079365;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:0,5:0,2:0,3 +chr12 106103144 . G A 0 PASS DP=61;GPV=1;SPV=8.1008e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,6:8,6 +chr12 106125324 . G C 0 PASS DP=63;GPV=1;SPV=0.004688;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,7:12,1 +chr12 106770243 . C CTTTTTTTTTTTTTTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.15775;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:11,1:4,4 +chr12 107452202 . A AT 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,7:9,2 +chr12 107524073 . G A 0 PASS DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,1:11,7 +chr12 108954113 . CA C 0 PASS DP=29;GPV=1;SPV=0.026877;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,5:4,2 +chr12 109123180 . C CA 0 PASS DP=51;GPV=1;SPV=0.018165;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,6:9,3 +chr12 109140280 . T A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3 +chr12 109979272 . CT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,5:4,2 +chr12 111143813 . T A 0 PASS DP=77;GPV=1;SPV=9.7753e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:14,4:16,11 +chr12 112797944 . C T 0 PASS DP=67;GPV=1;SPV=0.0011747;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:15,10:15,4 +chr12 112915265 . G C 0 PASS DP=54;GPV=1;SPV=0.01745;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,6:15,2 +chr12 113354067 . C CT 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr12 113496258 . G T 0 PASS DP=50;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,5:11,2:8,3 +chr12 113496259 . A ATCTATC 0 PASS DP=51;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,5:11,2:8,3 +chr12 114384744 . CA C 0 PASS DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3 +chr12 114556511 . C T 0 PASS DP=65;GPV=1;SPV=0.0027454;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:20,6:10,6 +chr12 114803944 . G T 0 PASS DP=61;GPV=1;SPV=0.0077151;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:14,4:11,3 +chr12 115416653 . A G 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,2:12,2 +chr12 115441810 . CTCTCTCTCTCTATATATA C 0 PASS DP=35;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,7:4,2:6,5 +chr12 116697288 . CAAAA C 0 PASS DP=41;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,7:5,6:6,1 +chr12 117133313 . C T 0 PASS DP=39;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:11,3:4,1 +chr12 117265151 . A T 0 PASS DP=78;GPV=1;SPV=4.3702e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:15,7:15,10 +chr12 117678102 . AT A 0 PASS DP=55;GPV=1;SPV=0.017137;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,8:10,6 +chr12 118823821 . A G 0 PASS DP=48;GPV=1;SPV=0.12587;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,5:4,2:1,3 +chr12 119189302 . GGTGT G 0 PASS DP=48;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,17:5,11:4,6 +chr12 120174789 . C CA 0 PASS DP=26;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:9,3:4,1 +chr12 120876808 . T TAC 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,7:3,3 +chr12 120899888 . C CAA 0 PASS DP=39;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,7:12,6:4,1 +chr12 120926962 . ATATATATTATATAATATGTAT A 0 PASS DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr12 121219615 . GGATA G 0 PASS DP=52;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,11:6,6:8,5 +chr12 121219623 . A G 0 PASS DP=52;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,16:6,7:6,9 +chr12 121494999 . C CTT 0 PASS DP=37;GPV=1;SPV=0.028934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,8:5,1 +chr12 121582304 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1 +chr12 121604441 . CA C 0 PASS DP=37;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,7:2,1 +chr12 122267207 . C CT 0 PASS DP=18;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:1,4:3,1 +chr12 123246709 . ATTTTTTTTTTTTTT A 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2 +chr12 123414932 . C CAAAA 0 PASS DP=43;GPV=1;SPV=0.014654;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:9,8:5,2 +chr12 124022613 . G T 0 PASS DP=25;GPV=1;SPV=0.046953;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,2:0,2 +chr12 124230450 . G T 0 PASS DP=59;GPV=1;SPV=0.0040457;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,8:13,2 +chr12 124258456 . C CAA 0 PASS DP=34;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,8:3,7:2,1 +chr12 124260258 . C CACCAGGGGCTGGGGCGAAG 0 PASS DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:9,6:11,8 +chr12 124367275 . GGCACACACAGAGGCCCA G 0 PASS DP=58;GPV=1;SPV=0.020935;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,8:13,5 +chr12 124922325 . T C 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr12 125368947 . G T 0 PASS DP=39;GPV=1;SPV=0.0083551;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,4:9,6 +chr12 126008544 . AT A 0 PASS DP=35;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3 +chr12 126224220 . A AATTT 0 PASS DP=48;GPV=1;SPV=0.0264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:6,4:10,5 +chr12 126612633 . T C 0 PASS DP=41;GPV=1;SPV=0.017866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,3:9,7 +chr12 127341339 . T A 0 PASS DP=49;GPV=1;SPV=0.0066425;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:5,4:17,7 +chr12 128113723 . A G 0 PASS DP=49;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,7:8,2 +chr12 128242360 . T TCA 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:22,3:2,1 +chr12 128775465 . TG T 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3 +chr12 128874124 . C CTTTCTT 0 PASS DP=22;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:0,3:4,2 +chr12 129030702 . CA C 0 PASS DP=56;GPV=1;SPV=0.018421;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:20,4:6,3 +chr12 129140839 . C CAA 0 PASS DP=41;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:10,9:5,4 +chr12 129506555 . A G 0 PASS DP=46;GPV=1;SPV=0.01088;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3 +chr12 129623698 . T C 0 PASS DP=51;GPV=1;SPV=0.0089009;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:6,4:7,1 +chr12 129654467 . T C 0 PASS DP=71;GPV=1;SPV=0.00037701;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:18,8:12,7 +chr12 129942879 . T G 0 PASS DP=69;GPV=1;SPV=2.4555e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:17,5:5,9 +chr12 129958612 . T C 0 PASS DP=72;GPV=1;SPV=0.0015169;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,4:13,4 +chr12 130905153 . C T 0 PASS DP=32;GPV=1;SPV=0.24625;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1 +chr12 131255918 . T G 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:2,1:15,3 +chr12 131414147 . T C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,1:11,3 +chr12 131451477 . C CT 0 PASS DP=30;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,7:3,1 +chr12 131574660 . C T 0 PASS DP=40;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,1:10,4 +chr12 131925532 . CT C 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,1:7,3 +chr12 132460047 . CT C 0 PASS DP=53;GPV=1;SPV=0.00019001;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,16:1,10:2,6 +chr12 132618228 . A AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 0 PASS DP=37;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:6,2:7,2 +chr12 132965125 . C T 0 PASS DP=43;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,5:8,3:2,2 +chr12 132981089 . T A 0 PASS DP=51;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,4:5,1:2,3 +chr12 133223445 . C CT 0 PASS DP=36;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:15,5:2,1 +chr13 18176119 . ATTGT A 0 PASS DP=349;GPV=1;SPV=0.049953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:129,19:57,11:72,8 +chr13 18196357 . G A 0 PASS DP=101;GPV=1;SPV=0.013484;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:25,3:24,4 +chr13 18242421 . C T 0 PASS DP=64;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:11,6:13,6 +chr13 18349087 . TTC T 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,1:4,4 +chr13 18460379 . T A 0 PASS DP=32;GPV=1;SPV=0.14853;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,5:11,1 +chr13 20290669 . T G 0 PASS DP=63;GPV=1;SPV=0.0015113;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,3:12,5 +chr13 20937932 . C CT 0 PASS DP=29;GPV=1;SPV=0.0033344;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,10:3,7:5,3 +chr13 21702976 . T C 0 PASS DP=58;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:10,1:20,3 +chr13 22184374 . C CTT 0 PASS DP=31;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,5:8,1 +chr13 22770497 . C CA 0 PASS DP=44;GPV=1;SPV=0.013164;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:13,22:10,15:3,7 +chr13 23055101 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,6:2,2 +chr13 23930675 . C T 0 PASS DP=34;GPV=1;SPV=0.083916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,5:2,4:3,1 +chr13 24664442 . C CA 0 PASS DP=39;GPV=1;SPV=0.037397;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,16:10,12:3,4 +chr13 24871958 . C CT 0 PASS DP=24;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:1,4:0,2 +chr13 25101116 . A ATGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:4,5:5,1 +chr13 25159298 . G T 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3 +chr13 25310206 . ATT A 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,4:6,8 +chr13 25510222 . G C 0 PASS DP=50;GPV=1;SPV=0.0061587;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,7:2,4:5,3 +chr13 25560700 . CA C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,5:5,1 +chr13 26472514 . ATATAT A 0 PASS DP=45;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,2:4,1:1,1 +chr13 26683494 . A G 0 PASS DP=48;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,2:1,1:1,1 +chr13 27051795 . G GATAT 0 PASS DP=22;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:2,2:3,2 +chr13 28326520 . CT C 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2 +chr13 28358395 . A G 0 PASS DP=68;GPV=1;SPV=0.00056171;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,4:14,9 +chr13 28737317 . TTCTTTCTTTC T 0 PASS DP=27;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:1,2:4,3 +chr13 28772119 . GAGCAGTGGTTTGTAGTTCTCCTTGA G 0 PASS DP=74;GPV=1;SPV=0.0015605;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,5:16,5 +chr13 29081781 . TTTTG T 0 PASS DP=42;GPV=1;SPV=0.090553;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,2:9,4 +chr13 29195540 . A G 0 PASS DP=33;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,8:0,6:0,2 +chr13 29978615 . AAT A 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3 +chr13 30101349 . CA C 0 PASS DP=29;GPV=1;SPV=0.00086221;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:4,16:2,12:2,4 +chr13 30474759 . C CT 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,3:4,1 +chr13 30674886 . AT A 0 PASS DP=26;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:6,2:3,3 +chr13 31657376 . CAA C 0 PASS DP=36;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:3,7:6,1 +chr13 31730519 . TTGTGTGTG T 0 PASS DP=30;GPV=1;SPV=0.0077803;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:4,6:4,3 +chr13 31860415 . A G 0 PASS DP=37;GPV=1;SPV=0.0014516;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,7:4,2 +chr13 32096802 . C CA 0 PASS DP=25;GPV=1;SPV=0.030702;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0 +chr13 32571160 . CT C 0 PASS DP=41;GPV=1;SPV=0.00052721;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,6:3,9 +chr13 32631118 . C T 0 PASS DP=42;GPV=1;SPV=0.0075758;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:1,5:1,2:0,3 +chr13 33499606 . T C 0 PASS DP=29;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,2:0,0:7,2 +chr13 34586081 . GAAAGAA G 0 PASS DP=23;GPV=1;SPV=0.029515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,6:0,1 +chr13 34624031 . CT C 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:11,4:0,3 +chr13 34752795 . C T 0 PASS DP=48;GPV=1;SPV=1.7354e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,19:5,12:5,7 +chr13 34760342 . C A 0 PASS DP=57;GPV=1;SPV=2.9244e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,9:10,9 +chr13 35298213 . A G 0 PASS DP=39;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,4:1,2:0,2 +chr13 36376549 . C CT 0 PASS DP=55;GPV=1;SPV=0.027569;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:2,3:0,2:2,1 +chr13 37309075 . CT C 0 PASS DP=20;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:3,6:1,1 +chr13 37320734 . A T 0 PASS DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:15,4:12,1 +chr13 37830561 . A T 0 PASS DP=49;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,5:10,2 +chr13 39542096 . T TATAATAATA 0 PASS DP=43;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:2,3:7,5 +chr13 39581532 . C CA 0 PASS DP=30;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:5,7:4,2 +chr13 40176928 . AAG A 0 PASS DP=46;GPV=1;SPV=0.03876;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chr13 40368888 . A C 0 PASS DP=45;GPV=1;SPV=0.083011;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,5:5,2:3,3 +chr13 40867524 . T C 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,3:4,3 +chr13 40867542 . AT A 0 PASS DP=29;GPV=1;SPV=0.0046977;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,4:3,4 +chr13 41596788 . T TACAC 0 PASS DP=38;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1 +chr13 41758415 . T TGGA 0 PASS DP=25;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,5:2,1:1,4 +chr13 41758421 . T TGGA 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,1:2,4 +chr13 41863360 . TTA T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:2,4:7,5 +chr13 42109651 . C T 0 PASS DP=58;GPV=1;SPV=0.0023411;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,4:1,1:2,3 +chr13 42420881 . A G 0 PASS DP=62;GPV=1;SPV=0.00011169;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,3:10,10 +chr13 42735776 . CGTGT C 0 PASS DP=41;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,13:6,8:5,5 +chr13 43003290 . T C 0 PASS DP=66;GPV=1;SPV=0.00043872;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,5:9,5 +chr13 43940611 . C T 0 PASS DP=56;GPV=1;SPV=0.0084069;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:11,13:1,7:10,6 +chr13 44595734 . C T 0 PASS DP=85;GPV=1;SPV=0.00020063;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:10,9:21,2 +chr13 44914001 . T C 0 PASS DP=22;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,2:0,2:0,0 +chr13 45191215 . C CAAAA 0 PASS DP=37;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:6,5:5,1 +chr13 45367313 . TAAA T 0 PASS DP=52;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:6,5:3,3:3,2 +chr13 45438626 . A AC 0 PASS DP=19;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,3:2,1 +chr13 45958653 . T C 0 PASS DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr13 47126806 . TAC T 0 PASS DP=31;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:5,10:2,4 +chr13 47223657 . C G 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1 +chr13 47638039 . T TA 0 PASS DP=35;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:5,8:6,2 +chr13 48316719 . TCACACACA T 0 PASS DP=30;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1 +chr13 50100936 . CA C 0 PASS DP=22;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:1,8:2,1 +chr13 50298168 . T TTTG 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,1:4,3 +chr13 50939361 . G A 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr13 51173109 . A G 0 PASS DP=63;GPV=1;SPV=0.019857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,6:12,2 +chr13 51173229 . G A 0 PASS DP=84;GPV=1;SPV=0.04213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:19,9:23,5 +chr13 52260651 . C CAA 0 PASS DP=31;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:4,6:2,1 +chr13 52269146 . T A 0 PASS DP=50;GPV=1;SPV=0.00024273;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,6:3,6 +chr13 52273946 . C T 0 PASS DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,5:4,2 +chr13 52294613 . A C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,5:4,4 +chr13 53138999 . C G 0 PASS DP=70;GPV=1;SPV=0.00019282;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,5:11,6 +chr13 53306335 . C CAA 0 PASS DP=34;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,9:4,4:2,5 +chr13 53506715 . TTATA T 0 PASS DP=36;GPV=1;SPV=0.00090577;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,15:4,10:4,5 +chr13 54937574 . G T 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr13 55469091 . CA C 0 PASS DP=28;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:5,8:1,1 +chr13 55470460 . G A 0 PASS DP=52;GPV=1;SPV=0.0088503;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4 +chr13 55789913 . T TTC 0 PASS DP=47;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,6:3,4:18,2 +chr13 56330838 . T TCACACA 0 PASS DP=36;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:9,7:2,3 +chr13 56885075 . TTA T 0 PASS DP=27;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:3,7:2,2 +chr13 56972897 . A G 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2 +chr13 57819712 . G A 0 PASS DP=67;GPV=1;SPV=0.0016513;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,2:11,7 +chr13 58487075 . C CA 0 PASS DP=34;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:4,6:5,2 +chr13 58874014 . T TACACACACACACACACAC 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,2:1,5 +chr13 60136954 . T A 0 PASS DP=47;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,4:4,1:3,3 +chr13 60274479 . C CG 0 PASS DP=34;GPV=1;SPV=0.00068595;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:5,19:1,11:4,8 +chr13 60654876 . TATCTTC T 0 PASS DP=36;GPV=1;SPV=0.0012868;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,5:2,5 +chr13 61352315 . T C 0 PASS DP=36;GPV=1;SPV=0.0031242;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,11:5,2:3,9 +chr13 62171594 . CA C 0 PASS DP=28;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,8:2,1 +chr13 63379882 . G A 0 PASS DP=68;GPV=1;SPV=0.0019465;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:11,7:21,7 +chr13 63470281 . C CTT 0 PASS DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3 +chr13 63624958 . CT C 0 PASS DP=24;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1 +chr13 63802967 . CT C 0 PASS DP=27;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:5,7:1,1 +chr13 63822620 . T C 0 PASS DP=24;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:1,1:3,3 +chr13 63932648 . C T 0 PASS DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,1:9,5 +chr13 63932654 . CACAT C 0 PASS DP=68;GPV=1;SPV=0.050247;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,1:13,3 +chr13 64375072 . C CA 0 PASS DP=28;GPV=1;SPV=0.0028686;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:5,9:0,2 +chr13 64408293 . C CAAAA 0 PASS DP=33;GPV=1;SPV=0.092234;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:5,5:4,1 +chr13 64571486 . T G 0 PASS DP=25;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,3:3,2 +chr13 64789649 . C CT 0 PASS DP=33;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:11,7:0,3 +chr13 64960992 . TCCC T 0 PASS DP=36;GPV=1;SPV=0.01205;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:3,1:6,6 +chr13 65857034 . A T 0 PASS DP=66;GPV=1;SPV=0.00021022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,5:10,5 +chr13 66196318 . G A 0 PASS DP=39;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,4:11,1 +chr13 66196322 . GTA G 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1 +chr13 66408050 . C CTT 0 PASS DP=38;GPV=1;SPV=0.0010668;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,11:4,9:4,2 +chr13 67380412 . C CAAAAA 0 PASS DP=20;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,4:0,0 +chr13 67650889 . GTATATATATATATA G 0 PASS DP=30;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:3,4:4,4 +chr13 69719209 . TGAGAGA T 0 PASS DP=55;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,5:2,1:0,4 +chr13 70336794 . GAGAGTTGCA G 0 PASS DP=67;GPV=1;SPV=0.013477;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:17,4:11,2 +chr13 70366060 . G GTGTGTGTGTGTGTA 0 PASS DP=42;GPV=1;SPV=0.001026;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,12:1,9:3,3 +chr13 71412339 . C CT 0 PASS DP=33;GPV=1;SPV=4.7337e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,14:3,10:3,4 +chr13 71748962 . TTC T 0 PASS DP=41;GPV=1;SPV=0.00022277;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:5,3:4,12 +chr13 72603496 . AAGAAAGAAAAAG A 0 PASS DP=50;GPV=1;SPV=0.020232;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:15,6:3,6 +chr13 73040203 . C CT 0 PASS DP=21;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1 +chr13 73094185 . CAA C 0 PASS DP=34;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:12,8:2,1 +chr13 74166087 . C CT 0 PASS DP=42;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,15:3,11:4,4 +chr13 74287349 . T TGAGAGAGAGAGAGAGA 0 PASS DP=35;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:6,7:5,2 +chr13 74545816 . C CA 0 PASS DP=45;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,9:10,8:1,1 +chr13 74547840 . ATAT A 0 PASS DP=27;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,3:4,1:1,2 +chr13 75544926 . C CAAAAAA 0 PASS DP=45;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:5,7:4,1 +chr13 75915955 . C CT 0 PASS DP=30;GPV=1;SPV=0.018691;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:5,10:2,5 +chr13 76715899 . A T 0 PASS DP=45;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,2:3,1:3,1 +chr13 77360844 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0007326;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:0,11:0,8:0,3 +chr13 78558913 . C CT 0 PASS DP=49;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:8,1:16,6 +chr13 79706055 . T G 0 PASS DP=62;GPV=1;SPV=0.060184;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,8:9,5:27,3 +chr13 80095207 . C T 0 PASS DP=39;GPV=1;SPV=0.045809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:1,2:15,10 +chr13 80728695 . A T 0 PASS DP=58;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:10,5:6,2:4,3 +chr13 80771699 . CA C 0 PASS DP=48;GPV=1;SPV=0.0058774;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,15:9,13:3,2 +chr13 81039678 . G A 0 PASS DP=84;GPV=1;SPV=0.0051535;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:19,5:24,6 +chr13 81457537 . T TTATATATATATATATA 0 PASS DP=27;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,2:2,2 +chr13 81666746 . T A 0 PASS DP=56;GPV=1;SPV=0.052719;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,4:14,1 +chr13 81717309 . G GTATATATATA 0 PASS DP=28;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,1:1,3 +chr13 82246369 . ATG A 0 PASS DP=45;GPV=1;SPV=0.24135;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,2:10,2 +chr13 82667206 . AT A 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,1:1,3 +chr13 83096328 . GAA G 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:17,2:2,2 +chr13 85051181 . GT G 0 PASS DP=33;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1 +chr13 85437381 . G A 0 PASS DP=51;GPV=1;SPV=0.031686;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,8:10,1 +chr13 85744942 . T TTA 0 PASS DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:11,1:11,3 +chr13 86281340 . A C 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3 +chr13 86303868 . T TTATTATATTA 0 PASS DP=51;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,14:7,5:6,9 +chr13 86551900 . C CA 0 PASS DP=46;GPV=1;SPV=0.00025277;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:8,23:6,19:2,4 +chr13 86847055 . G A 0 PASS DP=67;GPV=1;SPV=0.099672;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:16,2:22,3 +chr13 87679835 . AGTATATATATAGTATATATAGTATATAT A 0 PASS DP=45;GPV=1;SPV=0.021743;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,3:9,3 +chr13 87679863 . T TATA 0 PASS DP=44;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,7:2,2:3,5 +chr13 87807205 . C CATATATATATAT 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,2:0,3 +chr13 87961529 . T G 0 PASS DP=34;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,3:4,1:2,2 +chr13 88130374 . TAAAC T 0 PASS DP=55;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:6,6:2,3:4,3 +chr13 88700035 . CA C 0 PASS DP=36;GPV=1;SPV=0.0019186;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:5,11:4,2 +chr13 88870847 . C A 0 PASS DP=35;GPV=1;SPV=0.0024264;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,6:2,3 +chr13 89520126 . T TAA 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,4:5,4 +chr13 89774044 . A G 0 PASS DP=69;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:7,9:4,5:3,4 +chr13 89782008 . C T 0 PASS DP=48;GPV=1;SPV=0.23683;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,5:21,4:9,1 +chr13 90158149 . GT G 0 PASS DP=55;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:4,4:1,1:3,3 +chr13 90467158 . T A 0 PASS DP=79;GPV=1;SPV=0.00059141;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:16,7:20,8 +chr13 90654924 . A AT 0 PASS DP=45;GPV=1;SPV=0.00129;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,4:0,1:0,3 +chr13 90715022 . A G 0 PASS DP=65;GPV=1;SPV=0.030397;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,4:16,4 +chr13 90795124 . CTT C 0 PASS DP=43;GPV=1;SPV=0.25496;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3 +chr13 92109061 . G GT 0 PASS DP=36;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:6,6:5,3 +chr13 92264878 . C CTGTG 0 PASS DP=50;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:11,16:6,10:5,6 +chr13 92513552 . T C 0 PASS DP=54;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:6,3:1,1:5,2 +chr13 92513554 . T C 0 PASS DP=54;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:6,3:1,1:5,2 +chr13 92965085 . T TA 0 PASS DP=40;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,11:6,7:3,4 +chr13 93003909 . T TA 0 PASS DP=31;GPV=1;SPV=0.27368;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:4,5:7,2 +chr13 93300166 . G T 0 PASS DP=84;GPV=1;SPV=0.01564;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:22,5:25,5 +chr13 93324613 . A T 0 PASS DP=64;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:4,8:3,6:1,2 +chr13 93495730 . A T 0 PASS DP=43;GPV=1;SPV=3.4001e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,18:3,12:5,6 +chr13 93596614 . T A 0 PASS DP=55;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:8,5:6,3:2,2 +chr13 94742090 . A AT 0 PASS DP=25;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:3,4:4,4 +chr13 95264864 . CT C 0 PASS DP=36;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,13:5,9:3,4 +chr13 95296135 . A AAC 0 PASS DP=44;GPV=1;SPV=0.0055603;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:13,12:2,3 +chr13 95679199 . C CT 0 PASS DP=46;GPV=1;SPV=1.9163e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,22:5,15:4,7 +chr13 97069725 . C A 0 PASS DP=80;GPV=1;SPV=0.00052251;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:38,20:17,9:21,11 +chr13 97856273 . G T 0 PASS DP=77;GPV=1;SPV=0.0025106;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:13,6:24,6 +chr13 97869478 . G A 0 PASS DP=85;GPV=1;SPV=0.00024683;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:15,10:21,4 +chr13 98419483 . T TACACACAC 0 PASS DP=45;GPV=1;SPV=0.00056896;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,20:6,15:5,5 +chr13 98647913 . A ATGTGTGTGTGTG 0 PASS DP=40;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,12:3,9:8,3 +chr13 98781281 . G A 0 PASS DP=47;GPV=1;SPV=4.0454e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:6,19:3,10:3,9 +chr13 100043996 . A AT 0 PASS DP=30;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,3:6,6 +chr13 100577456 . G T 0 PASS DP=62;GPV=1;SPV=0.14744;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,1:18,3 +chr13 100817236 . C T 0 PASS DP=27;GPV=1;SPV=0.0066141;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:0,2:3,4 +chr13 101035623 . T TTG 0 PASS DP=56;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,18:10,10:6,8 +chr13 101280880 . C CT 0 PASS DP=36;GPV=1;SPV=0.00010594;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,18:6,16:1,2 +chr13 101332397 . C CAA 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:9,10:2,1 +chr13 101360230 . CCT C 0 PASS DP=51;GPV=1;SPV=0.0768;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:16,4:14,4 +chr13 101439208 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:4,5:3,3 +chr13 101557807 . G A 0 PASS DP=65;GPV=1;SPV=0.002945;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,7:11,2 +chr13 101847630 . C A 0 PASS DP=89;GPV=1;SPV=0.00010236;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:22,9:17,9 +chr13 101973120 . T A 0 PASS DP=74;GPV=1;SPV=6.4484e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:50:2,12:1,6:1,6 +chr13 102096003 . A G 0 PASS DP=61;GPV=1;SPV=0.0052174;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:6,6:4,4:2,2 +chr13 102378627 . C A 0 PASS DP=62;GPV=1;SPV=0.017534;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:2,5:1,4:1,1 +chr13 102452868 . A C 0 PASS DP=89;GPV=1;SPV=0.0047061;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:22,4:22,6 +chr13 102534693 . TAA T 0 PASS DP=57;GPV=1;SPV=0.00012397;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:14,28:7,16:7,12 +chr13 103040587 . T A 0 PASS DP=79;GPV=1;SPV=0.0013445;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:14,5:23,8 +chr13 103349821 . T A 0 PASS DP=82;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:29,6:16,5 +chr13 103458657 . GAT G 0 PASS DP=62;GPV=1;SPV=0.0062769;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,7:11,6 +chr13 104632370 . T C 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr13 105065149 . A G 0 PASS DP=77;GPV=1;SPV=0.030617;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:24,3:17,4 +chr13 106474855 . T C 0 PASS DP=91;GPV=1;SPV=0.035139;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:34,8:21,1 +chr13 107021828 . A AG 0 PASS DP=47;GPV=1;SPV=0.021691;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,5:3,4:8,1 +chr13 108636367 . T G 0 PASS DP=41;GPV=1;SPV=0.063509;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:13,1:8,6 +chr13 108795574 . G C 0 PASS DP=104;GPV=1;SPV=0.029243;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:28,4:29,3 +chr13 109095234 . G T 0 PASS DP=86;GPV=1;SPV=1.5926e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,22:14,15:16,7 +chr13 111491494 . C CTCTT 0 PASS DP=32;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:1,8:6,4 +chr13 111859141 . G A 0 PASS DP=55;GPV=1;SPV=0.0091533;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:6,11:1,4:5,7 +chr13 112192625 . T C 0 PASS DP=56;GPV=1;SPV=0.19619;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,2:16,3 +chr13 112196519 . GTCCCCTGGTTTCCTGGT G 0 PASS DP=31;GPV=1;SPV=0.28142;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:4,3:15,1 +chr13 112197128 . T G 0 PASS DP=42;GPV=1;SPV=0.01549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,4:5,5 +chr13 112238982 . C T 0 PASS DP=55;GPV=1;SPV=0.21542;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:7,1:29,4 +chr13 112241832 . G A 0 PASS DP=46;GPV=1;SPV=0.014654;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,10:5,5:9,5 +chr13 112296774 . G C 0 PASS DP=75;GPV=1;SPV=0.021694;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:27,4:12,14 +chr13 112440897 . G A 0 PASS DP=21;GPV=1;SPV=4.4228e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,12:0,8:0,4 +chr13 112598998 . C CA 0 PASS DP=62;GPV=1;SPV=0.037909;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,3:16,4 +chr13 113089460 . C T 0 PASS DP=73;GPV=1;SPV=0.035813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:23,3:14,3 +chr13 113142386 . A C 0 PASS DP=53;GPV=1;SPV=0.0021645;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:0,5:0,2:0,3 +chr13 113152420 . A G 0 PASS DP=92;GPV=1;SPV=0.0077782;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:21,6:29,5 +chr13 113876048 . T A 0 PASS DP=51;GPV=1;SPV=0.16049;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,3:14,2 +chr13 114020180 . T TAGC 0 PASS DP=33;GPV=1;SPV=0.0021876;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:7,15:0,1 +chr13 114028253 . C G 0 PASS DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:4,5:11,3 +chr13 114032815 . C T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr13 114032822 . C T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr14 18245579 . A G 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,1:9,6 +chr14 18245622 . C T 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:1,3:11,7 +chr14 18275569 . G A 0 PASS DP=49;GPV=1;SPV=0.049732;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:19,1:7,6 +chr14 18312423 . CT C 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,3:8,1 +chr14 18321677 . T A 0 PASS DP=119;GPV=1;SPV=0.003305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:25,5:31,4 +chr14 18605999 . C A 0 PASS DP=80;GPV=1;SPV=0.0035942;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:22,4:15,6 +chr14 18611398 . G T 0 PASS DP=135;GPV=1;SPV=0.0091195;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:60,12:22,2:38,10 +chr14 18616363 . T G 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr14 18625668 . T C 0 PASS DP=177;GPV=1;SPV=0.014869;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:95,15:47,8:48,7 +chr14 18679857 . TA T 0 PASS DP=122;GPV=1;SPV=0.029181;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,14:24,9:34,5 +chr14 18695892 . A G 0 PASS DP=98;GPV=1;SPV=0.028161;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:16,7:29,1 +chr14 18876682 . A T 0 PASS DP=87;GPV=1;SPV=0.017984;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:16,4:23,5 +chr14 18882906 . T G 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4 +chr14 18886836 . A G 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,3:10,2 +chr14 18889655 . C T 0 PASS DP=147;GPV=1;SPV=0.0079997;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:37,7:31,3 +chr14 18953973 . T C 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,3:14,7 +chr14 18977294 . C T 0 PASS DP=122;GPV=1;SPV=0.039232;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:12,3:43,6 +chr14 18979413 . G T 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr14 19060893 . C T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr14 19073256 . T C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,3:2,1 +chr14 19120520 . C A 0 PASS DP=148;GPV=1;SPV=0.041668;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:68,11:32,6:36,5 +chr14 19121026 . T G 0 PASS DP=124;GPV=1;SPV=0.045497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:55,13:30,8:25,5 +chr14 19201477 . C T 0 PASS DP=116;GPV=1;SPV=0.0075608;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:50,20:21,17:29,3 +chr14 19284994 . T A 0 PASS DP=224;GPV=1;SPV=0.04268;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:107,15:71,10:36,5 +chr14 19292460 . G A 0 PASS DP=206;GPV=1;SPV=0.011417;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:105,20:46,13:59,7 +chr14 19338757 . G C 0 PASS DP=72;GPV=1;SPV=0.022851;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:23,5:4,4 +chr14 19366231 . G A 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr14 19399403 . A G 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:16,2:5,3 +chr14 19420974 . A C 0 PASS DP=87;GPV=1;SPV=0.015138;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:1,1:42,11 +chr14 19432749 . A G 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,3:7,1 +chr14 19466921 . C CACA 0 PASS DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,3:0,2 +chr14 19480483 . G A 0 PASS DP=133;GPV=1;SPV=0.0081832;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:55,16:28,11:27,5 +chr14 19681182 . C CA 0 PASS DP=131;GPV=1;SPV=0.015845;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,12:36,7:19,5 +chr14 21666700 . GTT G 0 PASS DP=46;GPV=1;SPV=0.0045608;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:5,10:10,7 +chr14 22058785 . A G 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,2:10,2 +chr14 22817138 . T A 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2 +chr14 23109669 . A G 0 PASS DP=68;GPV=1;SPV=5.5231e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,7:8,4 +chr14 24670987 . A G 0 PASS DP=71;GPV=1;SPV=0.0053737;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:21,5:13,5 +chr14 24719516 . ATGTG A 0 PASS DP=28;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,6:3,1 +chr14 25124162 . C CAA 0 PASS DP=36;GPV=1;SPV=0.010217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,8:3,7:2,1 +chr14 25570574 . A T 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,5:11,7 +chr14 26041553 . AACAC A 0 PASS DP=25;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,6:4,1 +chr14 26204430 . T C 0 PASS DP=37;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,4:5,3:8,1 +chr14 26734958 . C CA 0 PASS DP=44;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,6:4,5 +chr14 26771706 . A ATT 0 PASS DP=38;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,11:4,5:2,6 +chr14 27101424 . C G 0 PASS DP=87;GPV=1;SPV=6.057e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:17,7:18,9 +chr14 27387169 . A T 0 PASS DP=66;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,3:2,1:3,2 +chr14 27827512 . C CTTT 0 PASS DP=43;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:12,8:5,5 +chr14 28593149 . G GTT 0 PASS DP=27;GPV=1;SPV=0.3064;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr14 29171225 . A ATTT 0 PASS DP=47;GPV=1;SPV=0.16205;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,6:15,2:7,4 +chr14 30193259 . A T 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2 +chr14 31124809 . AT A 0 PASS DP=47;GPV=1;SPV=0.014776;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,10:9,2 +chr14 33024172 . A G 0 PASS DP=63;GPV=1;SPV=0.077206;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:15,5:21,1 +chr14 33981523 . AAC A 0 PASS DP=55;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:1,3:0,2:1,1 +chr14 34463652 . CAG C 0 PASS DP=56;GPV=1;SPV=0.001388;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:4,6:13,11 +chr14 34876605 . A AT 0 PASS DP=43;GPV=1;SPV=0.0032683;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,6:9,5 +chr14 35131533 . T G 0 PASS DP=57;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:5,1:2,1 +chr14 35557098 . A ATGTGTG 0 PASS DP=28;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,5:2,1 +chr14 35727310 . CATAT C 0 PASS DP=35;GPV=1;SPV=5.3843e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,10:2,5:1,5 +chr14 36083488 . T C 0 PASS DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:3,2:7,9 +chr14 36824460 . T G 0 PASS DP=52;GPV=1;SPV=0.0014372;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4 +chr14 39761386 . A G 0 PASS DP=60;GPV=1;SPV=0.10738;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:18,2:13,2 +chr14 40247215 . T C 0 PASS DP=61;GPV=1;SPV=0.035377;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:16,3:19,7 +chr14 41023865 . T C 0 PASS DP=63;GPV=1;SPV=0.015886;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:11,4:20,4 +chr14 41044383 . A AAAGAAG 0 PASS DP=57;GPV=1;SPV=0.044901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,5:9,2:9,3 +chr14 41079335 . CAAAAAA C 0 PASS DP=42;GPV=1;SPV=0.0032765;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,7:1,5:3,2 +chr14 41405734 . T TA 0 PASS DP=30;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,5:4,1 +chr14 41886019 . C CAAA 0 PASS DP=26;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:9,4:0,1 +chr14 44191188 . ATGTG A 0 PASS DP=48;GPV=1;SPV=0.009628;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:7,7:3,3 +chr14 47827124 . C G 0 PASS DP=70;GPV=1;SPV=0.00077059;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,6:14,7 +chr14 49009544 . G A 0 PASS DP=67;GPV=1;SPV=0.0095989;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,2:14,5 +chr14 49603511 . T TTTC 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,2:8,2 +chr14 50023209 . G A 0 PASS DP=44;GPV=1;SPV=0.097744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:7,2:2,2 +chr14 50344469 . T G 0 PASS DP=33;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:6,4:7,1 +chr14 50945542 . C CT 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1 +chr14 50957320 . A G 0 PASS DP=53;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,5:6,4:4,1 +chr14 50964037 . C CAAA 0 PASS DP=25;GPV=1;SPV=0.17217;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,4:4,1 +chr14 51324352 . T C 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,5:10,4 +chr14 51932246 . C CA 0 PASS DP=28;GPV=1;SPV=0.0040134;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1 +chr14 52104297 . G GGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.0020744;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:6,9:7,2 +chr14 52625481 . CA C 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr14 52807896 . C G 0 PASS DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:5,2:7,2 +chr14 53213985 . T G 0 PASS DP=53;GPV=1;SPV=0.0032284;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3 +chr14 54085541 . CA C 0 PASS DP=31;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:2,6:0,2 +chr14 54614462 . G GA 0 PASS DP=56;GPV=1;SPV=6.3368e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,8:7,5 +chr14 54683675 . A C 0 PASS DP=63;GPV=1;SPV=0.015088;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:12,4:17,3 +chr14 54684619 . C G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5 +chr14 55109888 . CA C 0 PASS DP=24;GPV=1;SPV=0.0088413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,5:0,1 +chr14 55281255 . T TAAA 0 PASS DP=25;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:2,3:4,3 +chr14 55295533 . T C 0 PASS DP=61;GPV=1;SPV=0.019947;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:14,4:13,2 +chr14 56031544 . C CTT 0 PASS DP=28;GPV=1;SPV=0.25463;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:9,4:4,1 +chr14 59048006 . A G 0 PASS DP=60;GPV=1;SPV=8.0194e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:15,24:9,10:6,14 +chr14 60008136 . T C 0 PASS DP=66;GPV=1;SPV=0.0040978;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,4:11,4 +chr14 60695300 . G A 0 PASS DP=54;GPV=1;SPV=0.016495;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3 +chr14 61341395 . A G 0 PASS DP=68;GPV=1;SPV=0.0055492;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,2:12,5 +chr14 62242991 . T C 0 PASS DP=58;GPV=1;SPV=0.010153;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,5:12,6 +chr14 62599975 . A G 0 PASS DP=43;GPV=1;SPV=0.040363;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,6:9,2 +chr14 64014929 . TTATATATATATA T 0 PASS DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:5,2:1,2 +chr14 64358998 . T A 0 PASS DP=46;GPV=1;SPV=0.071698;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2 +chr14 64359307 . T TG 0 PASS DP=26;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,4:6,4 +chr14 64518904 . G GTATATA 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr14 65307895 . GT G 0 PASS DP=52;GPV=1;SPV=0.0029526;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:7,10:9,6 +chr14 66048070 . T G 0 PASS DP=38;GPV=1;SPV=0.01095;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:5,7:4,3 +chr14 67506487 . T G 0 PASS DP=51;GPV=1;SPV=0.00067152;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,5:9,4 +chr14 69180568 . T G 0 PASS DP=80;GPV=1;SPV=0.0006809;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:13,5:18,5 +chr14 69249069 . A C 0 PASS DP=44;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,2:1,1:0,1 +chr14 69533808 . A G 0 PASS DP=58;GPV=1;SPV=0.057437;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,2:16,4 +chr14 72113100 . A ATG 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,3:15,1 +chr14 72148129 . TAA T 0 PASS DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:1,6:2,3 +chr14 72664643 . T A 0 PASS DP=43;GPV=1;SPV=0.020413;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:4,1:15,6 +chr14 72915303 . C T 0 PASS DP=43;GPV=1;SPV=0.0033813;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:14,3:1,5 +chr14 73095606 . C CA 0 PASS DP=43;GPV=1;SPV=0.013111;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,8:10,5 +chr14 74477088 . A T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr14 75494381 . G A 0 PASS DP=39;GPV=1;SPV=0.0026122;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:8,6:3,8 +chr14 75636481 . C T 0 PASS DP=53;GPV=1;SPV=0.0047469;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,4:10,6 +chr14 77645594 . T TAA 0 PASS DP=33;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,9:1,6:2,3 +chr14 77678087 . C CAAA 0 PASS DP=24;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:3,3:3,1 +chr14 78225972 . TTG T 0 PASS DP=42;GPV=1;SPV=0.057853;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,3:10,4 +chr14 78225986 . T G 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,1:13,3 +chr14 79119795 . T C 0 PASS DP=50;GPV=1;SPV=0.00013352;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,19:8,7:8,12 +chr14 79427830 . C CA 0 PASS DP=42;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:7,5:6,2 +chr14 79515195 . A T 0 PASS DP=75;GPV=1;SPV=0.0004233;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,6:13,6 +chr14 79624800 . TTTG T 0 PASS DP=43;GPV=1;SPV=0.0091926;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:5,7:10,9 +chr14 79629839 . G A 0 PASS DP=57;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,4:9,2:9,2 +chr14 81226099 . T A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2 +chr14 81807963 . C CT 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr14 82950356 . C CAA 0 PASS DP=33;GPV=1;SPV=0.1839;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,4:5,1 +chr14 83686764 . T A 0 PASS DP=56;GPV=1;SPV=0.00063544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:16,6:5,6 +chr14 83855476 . C A 0 PASS DP=50;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:7,3:12,3 +chr14 84276774 . CT C 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,2:11,3 +chr14 84695017 . T TACACACAC 0 PASS DP=34;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2 +chr14 85595251 . A C 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,3:13,3 +chr14 85927893 . T A 0 PASS DP=37;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,2:10,3 +chr14 89392637 . CT C 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr14 89772721 . T A 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:1,0:20,4 +chr14 90352446 . C CA 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr14 91365168 . T TCCCTCAC 0 PASS DP=70;GPV=1;SPV=0.0094957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,6:12,6 +chr14 91988633 . T TA 0 PASS DP=45;GPV=1;SPV=0.0087645;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:13,8:3,3 +chr14 92167014 . C CTT 0 PASS DP=25;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:0,6:1,1 +chr14 94472507 . G C 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,3:12,2 +chr14 94737322 . CA C 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,5:5,2 +chr14 95066559 . T C 0 PASS DP=32;GPV=1;SPV=0.046615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,5:9,3 +chr14 95066560 . C A 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,5:9,3 +chr14 95242261 . T C 0 PASS DP=39;GPV=1;SPV=0.020642;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,7:7,3 +chr14 95479224 . CAAAAA C 0 PASS DP=36;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,6:4,3:2,3 +chr14 95558897 . A G 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr14 96403114 . T TTAAATAAATAAA 0 PASS DP=36;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:1,6:6,2 +chr14 97903510 . T G 0 PASS DP=63;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:5,2:4,1:1,1 +chr14 97936171 . T TTTTTC 0 PASS DP=33;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:4,1:11,3 +chr14 98204657 . A G 0 PASS DP=63;GPV=1;SPV=0.0020369;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:4,5:19,3 +chr14 98492110 . C T 0 PASS DP=65;GPV=1;SPV=0.00030588;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,10:13,5 +chr14 98744899 . GT G 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,5:2,2 +chr14 98781380 . T C 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr14 100621256 . G C 0 PASS DP=61;GPV=1;SPV=0.032567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,5:9,6 +chr14 102228700 . A C 0 PASS DP=50;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:5,1:2,1 +chr14 102315820 . TACACACACACACACACACACACACAC T 0 PASS DP=41;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:8,4:1,2 +chr14 103572787 . A AT 0 PASS DP=31;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:7,4:9,1 +chr14 103952216 . ATATATTTTTTTTTTTTT A 0 PASS DP=19;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,1:0,1 +chr14 104499251 . G C 0 PASS DP=51;GPV=1;SPV=0.020919;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,5:7,1 +chr14 104566594 . C G 0 PASS DP=76;GPV=1;SPV=0.0025995;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:17,4:17,6 +chr14 104683291 . C T 0 PASS DP=49;GPV=1;SPV=0.0067142;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:11,15:7,3 +chr14 104685999 . G A 0 PASS DP=16;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,2:0,0 +chr14 105327896 . G A 0 PASS DP=82;GPV=1;SPV=0.0019162;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:26,7:13,5 +chr14 105633937 . T A 0 PASS DP=112;GPV=1;SPV=0.036062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:27,5:25,5 +chr14 105639924 . C T 0 PASS DP=111;GPV=1;SPV=0.032003;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:56,9:36,7:20,2 +chr14 105654804 . A G 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,1:20,3 +chr14 105699669 . A T 0 PASS DP=137;GPV=1;SPV=0.029471;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:35,9:23,6 +chr14 106220507 . TTC T 0 PASS DP=58;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:5,11:14,6 +chr14 106626217 . A G 0 PASS DP=73;GPV=1;SPV=1.7288e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:10,9:14,6 +chr15 18533186 . T G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr15 19434997 . C T 0 PASS DP=55;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,5:25,5:2,0 +chr15 19859576 . C CA 0 PASS DP=32;GPV=1;SPV=0.0024274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,12:1,10:7,2 +chr15 19913009 . A AATGTGGTC 0 PASS DP=109;GPV=1;SPV=0.049607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:20,2:27,6 +chr15 20019797 . C T 0 PASS DP=237;GPV=1;SPV=0.042489;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:101,17:60,8:41,9 +chr15 20142002 . C T 0 PASS DP=63;GPV=1;SPV=0.015088;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:1,2:28,5 +chr15 20142988 . C T 0 PASS DP=225;GPV=1;SPV=0.021552;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:105,24:52,12:53,12 +chr15 20166342 . CA C 0 PASS DP=136;GPV=1;SPV=0.015443;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:57,8:37,6:20,2 +chr15 20183018 . T C 0 PASS DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1 +chr15 20273978 . G A 0 PASS DP=416;GPV=1;SPV=0.0025103;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:196,27:120,18:76,9 +chr15 20309395 . G A 0 PASS DP=282;GPV=1;SPV=0.037602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:100,12:57,8:43,4 +chr15 20314793 . T C 0 PASS DP=70;GPV=1;SPV=0.016979;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:15,8:9,3 +chr15 20669457 . G C 0 PASS DP=481;GPV=1;SPV=0.040058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:240,39:109,15:131,24 +chr15 20686189 . TA T 0 PASS DP=202;GPV=1;SPV=0.035492;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:91,21:55,14:36,7 +chr15 20686218 . C T 0 PASS DP=188;GPV=1;SPV=0.0019526;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:75,27:46,18:29,9 +chr15 20733898 . G T 0 PASS DP=262;GPV=1;SPV=0.048201;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:129,15:78,10:51,5 +chr15 20738533 . A T 0 PASS DP=68;GPV=1;SPV=0.090639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:0,0:34,4 +chr15 20749113 . C T 0 PASS DP=286;GPV=1;SPV=0.045336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:121,19:68,8:53,11 +chr15 20749323 . G A 0 PASS DP=257;GPV=1;SPV=0.048639;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:125,19:38,6:87,13 +chr15 20756584 . G A 0 PASS DP=288;GPV=1;SPV=0.019754;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:129,29:84,18:45,11 +chr15 20785986 . G C 0 PASS DP=229;GPV=1;SPV=0.028546;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:53,10:62,11 +chr15 20900873 . T C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,3:2,1 +chr15 20940208 . C A 0 PASS DP=345;GPV=1;SPV=0.01286;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:172,21:73,4:99,17 +chr15 21024854 . G A 0 PASS DP=307;GPV=1;SPV=0.033866;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:143,26:58,12:85,14 +chr15 21061789 . GA G 0 PASS DP=130;GPV=1;SPV=0.030763;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:35,7:18,1 +chr15 21069794 . A G 0 PASS DP=205;GPV=1;SPV=0.037504;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:46,12:48,7 +chr15 21122270 . A C 0 PASS DP=102;GPV=1;SPV=0.028316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:32,5:18,4 +chr15 21266784 . C T 0 PASS DP=444;GPV=1;SPV=0.021614;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:222,39:100,18:122,21 +chr15 21272114 . C T 0 PASS DP=428;GPV=1;SPV=0.029006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:210,25:119,18:91,7 +chr15 21310653 . G A 0 PASS DP=156;GPV=1;SPV=0.018842;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:20,1:37,8 +chr15 21360144 . G A 0 PASS DP=184;GPV=1;SPV=0.043197;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:83,12:47,7:36,5 +chr15 21374563 . C T 0 PASS DP=369;GPV=1;SPV=0.038401;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:192,26:104,14:88,12 +chr15 21431840 . G C 0 PASS DP=312;GPV=1;SPV=0.011137;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:161,21:76,7:85,14 +chr15 21482389 . C T 0 PASS DP=157;GPV=1;SPV=0.007533;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:73,13:47,8:26,5 +chr15 21525853 . CA C 0 PASS DP=92;GPV=1;SPV=0.023519;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,7:15,3:22,4 +chr15 21535775 . T TG 0 PASS DP=93;GPV=1;SPV=0.036691;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,3:22,2 +chr15 21550026 . C T 0 PASS DP=144;GPV=1;SPV=0.0026245;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:38,4:33,15 +chr15 21562361 . A G 0 PASS DP=166;GPV=1;SPV=0.016109;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:29,6:53,13 +chr15 21586885 . A T 0 PASS DP=52;GPV=1;SPV=0.032319;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:22,9:1,1 +chr15 21657253 . C A 0 PASS DP=44;GPV=1;SPV=0.012544;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:3,1:15,6 +chr15 21755344 . A AT 0 PASS DP=32;GPV=1;SPV=0.0012236;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:3,5:5,3 +chr15 22085514 . A T 0 PASS DP=36;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:12,4:2,1 +chr15 22250653 . A G 0 PASS DP=211;GPV=1;SPV=0.011067;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:103,21:51,13:52,8 +chr15 22253145 . T C 0 PASS DP=286;GPV=1;SPV=0.007382;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:123,26:67,13:56,13 +chr15 22266345 . A G 0 PASS DP=256;GPV=1;SPV=0.023147;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:123,24:60,14:63,10 +chr15 22295485 . A G 0 PASS DP=224;GPV=1;SPV=0.04268;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:107,15:50,7:57,8 +chr15 22424314 . GC G 0 PASS DP=130;GPV=1;SPV=0.02354;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:57,12:31,8:26,4 +chr15 22436984 . C T 0 PASS DP=62;GPV=1;SPV=0.053073;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:24,3:9,3 +chr15 24813200 . G T 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:15,5:6,2 +chr15 25261750 . A AAT 0 PASS DP=18;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,2:0,2 +chr15 26060244 . G T 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,6:13,1 +chr15 26510669 . T TAC 0 PASS DP=41;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,3:7,5 +chr15 26709515 . CTT C 0 PASS DP=25;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,8:2,6:3,2 +chr15 27002763 . AGG A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,1:5,3 +chr15 27002769 . G A 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr15 27255740 . C G 0 PASS DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,4:8,5 +chr15 28513574 . A G 0 PASS DP=46;GPV=1;SPV=0.036642;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,1:10,5 +chr15 28528140 . T TAC 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr15 29517443 . C T 0 PASS DP=67;GPV=1;SPV=6.2405e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:8,5:15,9 +chr15 30095073 . C T 0 PASS DP=58;GPV=1;SPV=0.00084999;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,2:10,8 +chr15 30227814 . G A 0 PASS DP=54;GPV=1;SPV=0.0026644;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:8,8:9,9 +chr15 30443176 . T C 0 PASS DP=41;GPV=1;SPV=0.0024454;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3 +chr15 30521653 . C T 0 PASS DP=81;GPV=1;SPV=0.029764;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,5:16,5 +chr15 30929794 . TATA T 0 PASS DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,4:2,2 +chr15 31144918 . G T 0 PASS DP=53;GPV=1;SPV=0.025864;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:16,2:8,4 +chr15 32187948 . C A 0 PASS DP=76;GPV=1;SPV=0.048263;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:16,3:18,7 +chr15 32567664 . G T 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chr15 32573700 . C T 0 PASS DP=72;GPV=1;SPV=0.025704;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:15,5:14,5 +chr15 32864382 . T C 0 PASS DP=48;GPV=1;SPV=0.022687;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6 +chr15 33664591 . A G 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,3:5,3 +chr15 36916095 . G C 0 PASS DP=51;GPV=1;SPV=0.012389;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:16,2:7,6 +chr15 38094375 . G A 0 PASS DP=52;GPV=1;SPV=0.079729;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2 +chr15 39696870 . CTGTGTGTGTGTGTGTGTGTGTG C 0 PASS DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr15 39916855 . G C 0 PASS DP=65;GPV=1;SPV=2.3992e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:11,7:6,4 +chr15 40143255 . T A 0 PASS DP=35;GPV=1;SPV=0.01192;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:5,6:2,2:3,4 +chr15 40358260 . G A 0 PASS DP=78;GPV=1;SPV=0.012197;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:23,3:13,4 +chr15 40861101 . G A 0 PASS DP=58;GPV=1;SPV=0.0035182;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,3:11,7 +chr15 40960264 . C T 0 PASS DP=54;GPV=1;SPV=0.00071485;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,9:10,5 +chr15 41271250 . G A 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,7:5,2 +chr15 41301970 . TAAAAAAAA T 0 PASS DP=36;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:8,4:3,3 +chr15 43510513 . A C 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2 +chr15 43554620 . T TAC 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,5:2,2 +chr15 43559845 . T C 0 PASS DP=63;GPV=1;SPV=0.013521;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,2:10,10 +chr15 43875367 . T A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,2:5,2 +chr15 45724917 . C T 0 PASS DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,3:6,5 +chr15 47573209 . A C 0 PASS DP=68;GPV=1;SPV=0.0050608;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:14,6:18,4 +chr15 47820587 . C T 0 PASS DP=37;GPV=1;SPV=0.036036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr15 50087356 . T A 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3 +chr15 51177593 . G A 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr15 51418432 . A C 0 PASS DP=57;GPV=1;SPV=0.00014188;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:9,5:10,8 +chr15 51584112 . G A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,2:2,1 +chr15 51747017 . T TA 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,4:2,4 +chr15 51963897 . C CAA 0 PASS DP=31;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:7,3:8,1 +chr15 52801334 . A G 0 PASS DP=65;GPV=1;SPV=4.5156e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7 +chr15 53068572 . TTG T 0 PASS DP=48;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:5,5:10,8 +chr15 53317388 . A AT 0 PASS DP=41;GPV=1;SPV=0.3107;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,1:11,3 +chr15 56920920 . T G 0 PASS DP=65;GPV=1;SPV=0.00049463;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:16,9:10,4 +chr15 57688496 . C CTA 0 PASS DP=44;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:9,3:6,3 +chr15 57723856 . C CAA 0 PASS DP=27;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:7,4:2,1 +chr15 58377542 . A T 0 PASS DP=65;GPV=1;SPV=0.0071404;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,8:19,4 +chr15 58573125 . T TAAAA 0 PASS DP=34;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:8,3:8,1 +chr15 59448526 . A AAGATAGATAGAT 0 PASS DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:2,4:14,4 +chr15 59448587 . G GT 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,5:7,5 +chr15 59518117 . C T 0 PASS DP=62;GPV=1;SPV=0.0030715;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,8:15,5 +chr15 59761668 . T C 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,1:16,3 +chr15 59761671 . TCTC T 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:1,1:20,4 +chr15 60060005 . G C 0 PASS DP=38;GPV=1;SPV=0.03809;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:16,4:2,3 +chr15 60065017 . CT C 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr15 60624399 . C T 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,5:4,4 +chr15 61277734 . T TC 0 PASS DP=42;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,4:1,1:2,3 +chr15 61293976 . G GAGAGAGAAAGAGAGAGAGAGAT 0 PASS DP=29;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,8:0,6:2,2 +chr15 61304939 . G T 0 PASS DP=78;GPV=1;SPV=0.00010991;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:18,4:8,7 +chr15 61716841 . G A 0 PASS DP=57;GPV=1;SPV=0.016244;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,10:9,5:8,5 +chr15 61914878 . TAAAAAAA T 0 PASS DP=25;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,8:3,6:0,2 +chr15 62437754 . T G 0 PASS DP=54;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,2:8,6 +chr15 62693955 . CTTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:2,3:1,3 +chr15 62741750 . T C 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2 +chr15 63376598 . CTT C 0 PASS DP=32;GPV=1;SPV=0.030729;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,4:8,1 +chr15 63581459 . C G 0 PASS DP=36;GPV=1;SPV=0.0044617;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:5,9:5,5 +chr15 65400078 . C A 0 PASS DP=55;GPV=1;SPV=0.0024549;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:16,7:8,6 +chr15 65994017 . C T 0 PASS DP=65;GPV=1;SPV=0.028734;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,3:15,2 +chr15 69127249 . CAAA C 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr15 69330881 . G T 0 PASS DP=61;GPV=1;SPV=0.0016174;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:17,6:6,3 +chr15 69556773 . T C 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,1:3,3 +chr15 71391815 . A G 0 PASS DP=64;GPV=1;SPV=0.002405;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:13,7:16,5 +chr15 71459160 . CTT C 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,3:2,4 +chr15 72665926 . G A 0 PASS DP=95;GPV=1;SPV=0.043774;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:30,10:8,2 +chr15 74111138 . T TA 0 PASS DP=24;GPV=1;SPV=0.0066141;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,4:3,2 +chr15 74818014 . G GA 0 PASS DP=33;GPV=1;SPV=0.03685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,5:3,1 +chr15 74964463 . C G 0 PASS DP=58;GPV=1;SPV=0.017892;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,6:13,1 +chr15 77458794 . G A 0 PASS DP=74;GPV=1;SPV=0.00011945;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:17,6:13,11 +chr15 77509555 . CGTGTGT C 0 PASS DP=29;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:4,3:4,2 +chr15 80030913 . TCCAA T 0 PASS DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:6,3:14,3 +chr15 80031051 . CAACCTATGCAAT C 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:20,1:10,3 +chr15 82079195 . A ATTT 0 PASS DP=35;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:5,3:8,2 +chr15 82354580 . C G 0 PASS DP=65;GPV=1;SPV=0.0069028;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:15,4:5,8 +chr15 82363710 . T C 0 PASS DP=39;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,8:4,1 +chr15 82369924 . CTG C 0 PASS DP=24;GPV=1;SPV=0.009324;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:1,1:1,5 +chr15 82580413 . G A 0 PASS DP=50;GPV=1;SPV=0.029893;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:19,3:4,3 +chr15 83055658 . C G 0 PASS DP=52;GPV=1;SPV=0.00096763;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:10,6:4,9 +chr15 84181735 . A G 0 PASS DP=72;GPV=1;SPV=0.001132;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:16,8:12,7 +chr15 84361182 . G T 0 PASS DP=47;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,5:16,2 +chr15 84563456 . C CA 0 PASS DP=32;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:3,7:2,3 +chr15 84708205 . C CAA 0 PASS DP=31;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:8,5:1,1 +chr15 84777695 . T C 0 PASS DP=41;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,8:2,5:1,3 +chr15 85351617 . CT C 0 PASS DP=41;GPV=1;SPV=0.0047011;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:7,5:6,9 +chr15 85896280 . G GTC 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,3:8,6 +chr15 86143457 . A T 0 PASS DP=67;GPV=1;SPV=0.0017947;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3 +chr15 88117084 . C G 0 PASS DP=62;GPV=1;SPV=1.6212e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:8,8:10,6 +chr15 88944963 . T C 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5 +chr15 90444281 . A G 0 PASS DP=35;GPV=1;SPV=0.02914;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2 +chr15 90517510 . C CTT 0 PASS DP=31;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,5:5,1 +chr15 90836843 . A AT 0 PASS DP=46;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,15:3,9:0,6 +chr15 91417686 . G T 0 PASS DP=58;GPV=1;SPV=0.00052;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:11,8:12,7 +chr15 91631790 . CTG C 0 PASS DP=50;GPV=1;SPV=0.0026899;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,13:4,9:7,4 +chr15 92889476 . CA C 0 PASS DP=37;GPV=1;SPV=0.019656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,4:8,1 +chr15 92889487 . A G 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,4:5,2 +chr15 95367844 . T TAC 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:3,2:0,1 +chr15 95796674 . AAAGAAAG A 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr15 96327526 . G A 0 PASS DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,2:18,2 +chr15 97169140 . C T 0 PASS DP=62;GPV=1;SPV=0.00021002;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,6:9,8 +chr15 98497459 . GTTT G 0 PASS DP=32;GPV=1;SPV=0.17677;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:11,2:3,3 +chr15 98869434 . C CT 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:10,8:3,1 +chr15 100620534 . A G 0 PASS DP=32;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,3:3,5 +chr15 100672746 . CTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,1:3,4 +chr15 101615634 . TGCATGCACTGTGGATGTGGCCTGCCCTCTAAGTGCC T 0 PASS DP=76;GPV=1;SPV=0.046824;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:18,6:20,3 +chr15 101766901 . T G 0 PASS DP=44;GPV=1;SPV=0.0031408;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:10,3:4,10 +chr15 101870043 . T C 0 PASS DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,1:11,4 +chr15 101892736 . C T 0 PASS DP=28;GPV=1;SPV=0.15775;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:3,3:12,2 +chr16 12060 . G C 0 PASS DP=72;GPV=1;SPV=0.0493;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,4:11,1 +chr16 29811 . T C 0 PASS DP=68;GPV=1;SPV=0.023415;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:23,9:10,3 +chr16 239457 . CA C 0 PASS DP=49;GPV=1;SPV=0.00044356;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:11,14:3,4 +chr16 382087 . C CG 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,4:7,4 +chr16 661016 . G C 0 PASS DP=18;GPV=1;SPV=0.0067873;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:0,1:3,5 +chr16 665325 . C T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,2:18,3 +chr16 1267169 . CA C 0 PASS DP=37;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:9,9:4,5 +chr16 1329545 . G A 0 PASS DP=47;GPV=1;SPV=0.0013799;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,7:11,7 +chr16 1604274 . C CGTGTGTGT 0 PASS DP=46;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,10:9,8:2,2 +chr16 2263435 . C G 0 PASS DP=76;GPV=1;SPV=2.233e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:16,6:10,9 +chr16 2861376 . A G 0 PASS DP=62;GPV=1;SPV=0.011419;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,3:15,5 +chr16 3190749 . T TA 0 PASS DP=48;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:17,3:8,3 +chr16 4181197 . TA T 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,5:6,3 +chr16 4197421 . C CTTTT 0 PASS DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,3:3,2 +chr16 4262559 . T C 0 PASS DP=70;GPV=1;SPV=5.0036e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:10,8:14,6 +chr16 4889232 . G T 0 PASS DP=27;GPV=1;SPV=0.11404;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,2:2,3 +chr16 5010188 . CAA C 0 PASS DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr16 5255342 . A C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:5,2:13,4 +chr16 5825800 . T G 0 PASS DP=53;GPV=1;SPV=0.015558;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:12,4:7,8 +chr16 6253673 . GCA G 0 PASS DP=38;GPV=1;SPV=0.23992;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:9,1:12,2 +chr16 6398866 . C T 0 PASS DP=86;GPV=1;SPV=0.010118;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:23,6:19,2 +chr16 6480050 . G GA 0 PASS DP=28;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,11:5,10:0,1 +chr16 7557619 . C CA 0 PASS DP=21;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:3,4:1,1 +chr16 7932626 . CAT C 0 PASS DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr16 9607235 . CA C 0 PASS DP=34;GPV=1;SPV=0.0015608;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,5:2,1 +chr16 10802286 . A G 0 PASS DP=37;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:5,5:8,1 +chr16 11330221 . ATT A 0 PASS DP=24;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:3,7:0,1 +chr16 12019587 . T TATAG 0 PASS DP=53;GPV=1;SPV=0.0045492;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4 +chr16 12075215 . G T 0 PASS DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:10,4:11,5 +chr16 12851012 . C CT 0 PASS DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,4:8,2 +chr16 13987297 . CT C 0 PASS DP=35;GPV=1;SPV=0.010728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr16 14329386 . C CA 0 PASS DP=37;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2 +chr16 14371882 . G A 0 PASS DP=61;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,4:10,3:8,1 +chr16 14834687 . G GT 0 PASS DP=33;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:6,2:4,2 +chr16 14938413 . C T 0 PASS DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:19,2:19,8 +chr16 14953358 . T C 0 PASS DP=42;GPV=1;SPV=0.075461;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:18,3:5,4 +chr16 15127800 . C T 0 PASS DP=98;GPV=1;SPV=0.0088777;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:24,5:23,7 +chr16 15167877 . C CAA 0 PASS DP=51;GPV=1;SPV=0.0014624;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,5:9,6 +chr16 15302112 . G GAC 0 PASS DP=107;GPV=1;SPV=0.035771;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:25,2:22,10 +chr16 15307890 . T G 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr16 15360843 . C T 0 PASS DP=24;GPV=1;SPV=0.0065876;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,0:4,4 +chr16 15472860 . C CT 0 PASS DP=42;GPV=1;SPV=0.019258;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,9:4,2 +chr16 16261241 . C A 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2 +chr16 16374023 . C T 0 PASS DP=57;GPV=1;SPV=0.040223;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,1:13,8 +chr16 16412983 . G A 0 PASS DP=33;GPV=1;SPV=0.0045524;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,5:1,2 +chr16 16422341 . G A 0 PASS DP=23;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2 +chr16 16449463 . GAGAGAGAGAGACAGAGAC G 0 PASS DP=48;GPV=1;SPV=0.022357;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:14,4:4,4 +chr16 16497319 . G GTTTT 0 PASS DP=98;GPV=1;SPV=0.054086;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:39,5:24,4 +chr16 16599305 . A G 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,5:4,3 +chr16 16605268 . C CTTTCT 0 PASS DP=86;GPV=1;SPV=0.041446;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,10:14,2:22,8 +chr16 16657672 . TTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,2:5,2 +chr16 16658443 . C A 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:5,8:2,4 +chr16 16779097 . A G 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,1:5,2 +chr16 17174040 . T G 0 PASS DP=69;GPV=1;SPV=0.0012459;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:14,5:12,4 +chr16 17226704 . G T 0 PASS DP=64;GPV=1;SPV=0.0074013;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,6:16,4 +chr16 17320482 . C CT 0 PASS DP=19;GPV=1;SPV=0.002997;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,8:0,4:0,4 +chr16 17571475 . C A 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3 +chr16 17868664 . A T 0 PASS DP=21;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr16 18103845 . C A 0 PASS DP=39;GPV=1;SPV=0.014881;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,4:4,1 +chr16 18348559 . A G 0 PASS DP=121;GPV=1;SPV=0.036718;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:23,7:30,4 +chr16 18702360 . GTGGTGGCA G 0 PASS DP=24;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,1:4,3 +chr16 20146599 . C G 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1 +chr16 20541679 . TTC T 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,12:8,7:5,5 +chr16 21664982 . A G 0 PASS DP=52;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,4:7,2:12,2 +chr16 21851256 . TGGGGA T 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr16 23169118 . G A 0 PASS DP=17;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,2:0,0 +chr16 23867056 . C T 0 PASS DP=32;GPV=1;SPV=0.057743;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,1:10,4 +chr16 23981588 . T C 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,1:15,3 +chr16 24265449 . A G 0 PASS DP=47;GPV=1;SPV=0.26001;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:21,2:9,2 +chr16 25904143 . GATGGATGGATGA G 0 PASS DP=55;GPV=1;SPV=0.044124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,5:11,3 +chr16 26341276 . A G 0 PASS DP=59;GPV=1;SPV=0.024469;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:14,3:15,4 +chr16 26374868 . G A 0 PASS DP=46;GPV=1;SPV=0.040129;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5 +chr16 26766055 . TA T 0 PASS DP=60;GPV=1;SPV=0.003503;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,6:7,4 +chr16 26770773 . G A 0 PASS DP=47;GPV=1;SPV=0.021659;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,10:9,7:7,3 +chr16 26770775 . TAAATGATA T 0 PASS DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,9:8,6:7,3 +chr16 27855740 . AG A 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:4,11:5,2 +chr16 28225839 . CT C 0 PASS DP=23;GPV=1;SPV=0.011625;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,3:1,3 +chr16 28579203 . G C 0 PASS DP=44;GPV=1;SPV=0.0088148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,5:11,3 +chr16 29343974 . TTTTTTG T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr16 30219809 . A G 0 PASS DP=33;GPV=1;SPV=0.039921;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,2:9,5 +chr16 30586575 . G GT 0 PASS DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr16 31062783 . G A 0 PASS DP=18;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr16 31268395 . C G 0 PASS DP=76;GPV=1;SPV=0.00035646;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:22,8:8,4 +chr16 31716997 . GT G 0 PASS DP=25;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:6,3:4,1 +chr16 31962146 . T A 0 PASS DP=64;GPV=1;SPV=0.026412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:12,4:15,1 +chr16 32069030 . T C 0 PASS DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,4:7,5 +chr16 32192091 . G C 0 PASS DP=71;GPV=1;SPV=0.01768;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:10,8:20,5 +chr16 32303731 . G T 0 PASS DP=132;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:53,17:25,5:28,12 +chr16 32327877 . C T 0 PASS DP=46;GPV=1;SPV=0.086635;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,4:12,1 +chr16 32626055 . C CTT 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,4:8,2 +chr16 32883828 . GCCACTGACTCGGGCC G 0 PASS DP=51;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,6:11,3 +chr16 32925585 . G A 0 PASS DP=84;GPV=1;SPV=0.011252;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:21,5:16,5 +chr16 33017866 . A T 0 PASS DP=54;GPV=1;SPV=0.0089143;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:3,3:17,3 +chr16 33018589 . G A 0 PASS DP=47;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4 +chr16 33337144 . C T 0 PASS DP=174;GPV=1;SPV=0.049179;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:87,18:40,10:47,8 +chr16 33582391 . G GCAA 0 PASS DP=91;GPV=1;SPV=0.030653;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:22,9:20,7 +chr16 33625825 . T C 0 PASS DP=99;GPV=1;SPV=0.038713;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,3:20,7 +chr16 33727080 . CTTT C 0 PASS DP=40;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,8:3,7:4,1 +chr16 33733632 . C T 0 PASS DP=294;GPV=1;SPV=0.014655;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:135,32:61,14:74,18 +chr16 33918582 . T G 0 PASS DP=76;GPV=1;SPV=0.022734;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:14,2:16,11 +chr16 34014924 . A G 0 PASS DP=31;GPV=1;SPV=0.028638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,6:2,5:2,1 +chr16 34165244 . G A 0 PASS DP=108;GPV=1;SPV=0.012235;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:32,6:20,1 +chr16 34174419 . C CA 0 PASS DP=173;GPV=1;SPV=0.038871;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:41,12:36,7 +chr16 34716233 . T C 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,2:9,2 +chr16 35478339 . C T 0 PASS DP=98;GPV=1;SPV=0.00073344;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:19,4:21,6 +chr16 36100822 . CAT C 0 PASS DP=207;GPV=1;SPV=0.040003;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:92,22:50,12:42,10 +chr16 36111053 . C T 0 PASS DP=146;GPV=1;SPV=0.031943;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:64,13:27,3:37,10 +chr16 36120992 . GA G 0 PASS DP=247;GPV=1;SPV=0.0098825;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:113,15:41,8:72,7 +chr16 37989067 . G C 0 PASS DP=86;GPV=1;SPV=0.044889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,3:16,8 +chr16 38130001 . G A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr16 38166303 . T A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr16 46743532 . G A 0 PASS DP=72;GPV=1;SPV=0.00034236;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,5:13,5 +chr16 46780086 . A T 0 PASS DP=65;GPV=1;SPV=0.00024776;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,6:8,4 +chr16 47675519 . A T 0 PASS DP=45;GPV=1;SPV=0.046254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,2:13,4 +chr16 48416181 . T A 0 PASS DP=45;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:2,1:2,1 +chr16 48772945 . C T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr16 49099105 . CAT C 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2 +chr16 49873866 . CTT C 0 PASS DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,4:6,2 +chr16 51288370 . AAAAGAAAGAAAG A 0 PASS DP=45;GPV=1;SPV=0.0091476;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,7:8,4:7,3 +chr16 51644253 . T C 0 PASS DP=48;GPV=1;SPV=0.038709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:21,4:2,2 +chr16 53025955 . T C 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr16 53360790 . AT A 0 PASS DP=28;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:9,4:1,1 +chr16 54074919 . T A 0 PASS DP=45;GPV=1;SPV=0.0401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,8:6,3:4,5 +chr16 54538394 . G T 0 PASS DP=70;GPV=1;SPV=0.0014418;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:16,5:15,7 +chr16 54980414 . C CT 0 PASS DP=28;GPV=1;SPV=0.00041135;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,7:1,6:0,1 +chr16 55027099 . C CAA 0 PASS DP=59;GPV=1;SPV=0.014369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,6:11,4:7,2 +chr16 55920846 . A T 0 PASS DP=49;GPV=1;SPV=0.0015295;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:13,4:6,8 +chr16 56256698 . C G 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2 +chr16 56540665 . T C 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3 +chr16 56620729 . A G 0 PASS DP=34;GPV=1;SPV=0.0051075;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,2:5,8 +chr16 56620736 . A G 0 PASS DP=33;GPV=1;SPV=0.01828;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,2:6,6 +chr16 56755268 . G T 0 PASS DP=73;GPV=1;SPV=0.00076085;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:12,8:16,2 +chr16 57311441 . G GGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:5,5:3,1 +chr16 58171984 . T A 0 PASS DP=18;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2 +chr16 58758216 . TTATATATATA T 0 PASS DP=42;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,13:5,6:2,7 +chr16 58831783 . CTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCT C 0 PASS DP=24;GPV=1;SPV=0.2248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:5,2:7,1 +chr16 60475590 . TACACAC T 0 PASS DP=34;GPV=1;SPV=0.059571;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:14,6:3,3 +chr16 60639011 . T G 0 PASS DP=63;GPV=1;SPV=0.0022162;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,6:11,3 +chr16 60991226 . G T 0 PASS DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:7,5:16,4 +chr16 61446059 . A AATATATATATATATAT 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2 +chr16 61726301 . A C 0 PASS DP=66;GPV=1;SPV=0.0016045;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:13,8:16,4 +chr16 61960085 . ATATG A 0 PASS DP=36;GPV=1;SPV=0.16193;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:9,2:7,1 +chr16 62506719 . G T 0 PASS DP=56;GPV=1;SPV=0.0012998;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:13,4:9,7 +chr16 62890211 . CT C 0 PASS DP=45;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:4,7:9,4 +chr16 62913519 . C A 0 PASS DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:13,7:13,2 +chr16 63084059 . GTGTGTGTGTA G 0 PASS DP=40;GPV=1;SPV=0.0038562;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,8:6,2 +chr16 63658223 . C CAA 0 PASS DP=30;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:4,5:7,1 +chr16 64058866 . G T 0 PASS DP=61;GPV=1;SPV=0.00035192;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,7:16,6 +chr16 64535517 . A T 0 PASS DP=47;GPV=1;SPV=0.0029614;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:4,5:3,4 +chr16 64738125 . T C 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr16 65060356 . G T 0 PASS DP=45;GPV=1;SPV=0.00042646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:6,4:5,4 +chr16 65537057 . G GTATA 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,2:0,3 +chr16 68456296 . C CT 0 PASS DP=27;GPV=1;SPV=0.0019324;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:5,5:1,2 +chr16 68609146 . CA C 0 PASS DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr16 68743351 . C CT 0 PASS DP=30;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:3,2:1,3 +chr16 68793930 . CA C 0 PASS DP=26;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:3,8:3,3 +chr16 69732501 . C G 0 PASS DP=56;GPV=1;SPV=0.00040437;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:7,6:13,6 +chr16 69738472 . G A 0 PASS DP=45;GPV=1;SPV=0.0026128;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,6:6,4 +chr16 72112803 . G C 0 PASS DP=75;GPV=1;SPV=0.0001497;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,6:13,6 +chr16 73099710 . C CA 0 PASS DP=39;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:13,9:6,1 +chr16 73753986 . A ATGTGTGTGTGTGTG 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,8:7,1 +chr16 75259850 . T TAA 0 PASS DP=32;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,9:3,7:2,2 +chr16 75586220 . T C 0 PASS DP=55;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,6:8,3:6,3 +chr16 76862808 . T TAA 0 PASS DP=36;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,4:5,2 +chr16 77311504 . A G 0 PASS DP=58;GPV=1;SPV=0.00011008;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:9,6:10,7 +chr16 78358866 . C CTTTTT 0 PASS DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,3:2,2 +chr16 78481724 . A AGTGT 0 PASS DP=24;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr16 79091779 . G GT 0 PASS DP=27;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,5:4,1 +chr16 79673815 . A C 0 PASS DP=66;GPV=1;SPV=0.0029415;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:14,6:16,5 +chr16 80411036 . A G 0 PASS DP=54;GPV=1;SPV=0.008813;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,4:10,3 +chr16 81033591 . C CTT 0 PASS DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,1:1,3 +chr16 81197668 . C CA 0 PASS DP=32;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:8,6:2,3 +chr16 81304104 . T TAAA 0 PASS DP=48;GPV=1;SPV=0.013049;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:8,5:7,6 +chr16 82298353 . A T 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,2:17,2 +chr16 82953245 . C T 0 PASS DP=59;GPV=1;SPV=0.0030549;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:20,2:6,9 +chr16 83000574 . CT C 0 PASS DP=29;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,6:4,3 +chr16 83286770 . G GTA 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr16 84050735 . GC G 0 PASS DP=80;GPV=1;SPV=0.016523;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:11,7:27,4 +chr16 87434994 . A C 0 PASS DP=32;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,2:4,1:2,1 +chr16 88236683 . A G 0 PASS DP=50;GPV=1;SPV=0.04614;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,1:5,3 +chr16 88558660 . A C 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,3:12,2 +chr16 89093509 . T G 0 PASS DP=64;GPV=1;SPV=0.00061107;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:16,5:7,5 +chr17 425873 . C CT 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,4:3,1 +chr17 884247 . T TA 0 PASS DP=48;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,8:8,6:5,2 +chr17 942690 . G A 0 PASS DP=31;GPV=1;SPV=0.10134;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,5:7,1 +chr17 1062786 . C T 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:5,3:17,1 +chr17 1098075 . CT C 0 PASS DP=42;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:6,7:4,4 +chr17 2218028 . CA C 0 PASS DP=48;GPV=1;SPV=0.0047709;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,6:11,7 +chr17 3699052 . G GACACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.035819;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:7,2:7,3 +chr17 4640699 . A G 0 PASS DP=79;GPV=1;SPV=0.014135;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:12,5:18,5 +chr17 5226508 . C T 0 PASS DP=51;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:10,2:5,2 +chr17 5749632 . G A 0 PASS DP=34;GPV=1;SPV=0.15275;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2 +chr17 6296216 . A ATGTGTG 0 PASS DP=36;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:7,5:4,1 +chr17 6300670 . A C 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7 +chr17 7662623 . CT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,5:2,2 +chr17 7754833 . C T 0 PASS DP=85;GPV=1;SPV=9.577e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:15,7:16,11 +chr17 7793522 . TTC T 0 PASS DP=46;GPV=1;SPV=0.036676;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr17 7871493 . T C 0 PASS DP=55;GPV=1;SPV=0.0035252;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,3:11,5 +chr17 8087257 . C G 0 PASS DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,2:12,2 +chr17 8339237 . GTT G 0 PASS DP=54;GPV=1;SPV=0.0033069;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:11,8:7,3 +chr17 8343815 . AGTGTGT A 0 PASS DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,2:8,7 +chr17 8363840 . T TC 0 PASS DP=29;GPV=1;SPV=0.22332;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:7,2:8,1 +chr17 10005162 . T C 0 PASS DP=46;GPV=1;SPV=0.29013;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,5:9,3:13,2 +chr17 11294120 . G A 0 PASS DP=67;GPV=1;SPV=0.0030237;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,2:12,5 +chr17 11350186 . T A 0 PASS DP=46;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chr17 11727047 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:6,4:5,1 +chr17 12197620 . G C 0 PASS DP=72;GPV=1;SPV=0.0020908;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,7:14,3 +chr17 12396663 . AGT A 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:6,4:3,1 +chr17 12398606 . A T 0 PASS DP=67;GPV=1;SPV=3.7651e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:6,8:14,4 +chr17 12558857 . C CT 0 PASS DP=21;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:0,7:0,6:0,1 +chr17 12989097 . C A 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2 +chr17 13328022 . A G 0 PASS DP=57;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,4:7,2:9,2 +chr17 14544331 . T C 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,2:6,2 +chr17 15075577 . T A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chr17 15543021 . G C 0 PASS DP=73;GPV=1;SPV=0.016944;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,11:17,2 +chr17 15757702 . T C 0 PASS DP=48;GPV=1;SPV=0.26909;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2 +chr17 16476732 . ATT A 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2 +chr17 16848058 . G A 0 PASS DP=38;GPV=1;SPV=0.0087022;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2 +chr17 17297016 . T A 0 PASS DP=65;GPV=1;SPV=0.002945;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:15,5:12,4 +chr17 17750551 . G A 0 PASS DP=65;GPV=1;SPV=0.0014199;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,4:16,6 +chr17 19820088 . C T 0 PASS DP=46;GPV=1;SPV=0.00074174;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,5:6,4 +chr17 20504029 . G A 0 PASS DP=63;GPV=1;SPV=0.0006045;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:12,3:9,6 +chr17 21839232 . GC G 0 PASS DP=105;GPV=1;SPV=0.020857;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:21,6:26,5 +chr17 21841577 . T G 0 PASS DP=184;GPV=1;SPV=0.0024614;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:82,14:45,2:37,12 +chr17 21987800 . GTGGAATGGAA G 0 PASS DP=68;GPV=1;SPV=0.049244;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,4:12,4 +chr17 22352507 . A G 0 PASS DP=60;GPV=1;SPV=0.003548;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,7:11,2 +chr17 22392478 . C G 0 PASS DP=69;GPV=1;SPV=0.036308;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:27,7:4,1 +chr17 22846601 . T A 0 PASS DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:3,0:33,4 +chr17 22882404 . G A 0 PASS DP=180;GPV=1;SPV=0.004564;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:75,21:36,13:39,8 +chr17 22927792 . A T 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,4:2,5 +chr17 22927816 . G A 0 PASS DP=34;GPV=1;SPV=0.0055231;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:7,3:2,3 +chr17 22963319 . C A 0 PASS DP=99;GPV=1;SPV=0.031592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:17,5:27,8 +chr17 23169314 . T A 0 PASS DP=108;GPV=1;SPV=0.0094581;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:38,6:8,3 +chr17 23169339 . G C 0 PASS DP=117;GPV=1;SPV=0.0074015;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:41,6:11,4 +chr17 23189772 . A T 0 PASS DP=83;GPV=1;SPV=0.02406;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,4:16,2 +chr17 23209679 . C T 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,0:25,4 +chr17 26623519 . A T 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:0,1:21,4 +chr17 26624350 . T C 0 PASS DP=35;GPV=1;SPV=0.1143;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2 +chr17 26638376 . A G 0 PASS DP=40;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,2:10,2 +chr17 26771693 . G A 0 PASS DP=107;GPV=1;SPV=0.037516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:19,3:28,6 +chr17 27034281 . A G 0 PASS DP=57;GPV=1;SPV=0.010988;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,5:13,3 +chr17 27981065 . GGAA G 0 PASS DP=46;GPV=1;SPV=0.0972;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,3:9,2 +chr17 28000235 . G C 0 PASS DP=55;GPV=1;SPV=0.0086388;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,3:10,5 +chr17 28001490 . T C 0 PASS DP=55;GPV=1;SPV=0.0012831;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,2:9,6 +chr17 28540780 . A T 0 PASS DP=51;GPV=1;SPV=0.23366;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,4:5,1:4,3 +chr17 28754286 . GT G 0 PASS DP=33;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:9,5:0,2 +chr17 29072202 . CTT C 0 PASS DP=29;GPV=1;SPV=0.0071032;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,7:1,4 +chr17 29439864 . TAAAAAAAAA T 0 PASS DP=34;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,13:0,6:5,7 +chr17 30221426 . C T 0 PASS DP=28;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3 +chr17 32092192 . CACAT C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr17 32977656 . G T 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,7:0,1 +chr17 33657757 . T TAA 0 PASS DP=36;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:8,6:6,1 +chr17 34732698 . T A 0 PASS DP=62;GPV=1;SPV=0.0017311;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,4:9,4 +chr17 36462975 . G A 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,4:6,1 +chr17 37119589 . A AACACAC 0 PASS DP=38;GPV=1;SPV=0.03771;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2 +chr17 37449619 . ATT A 0 PASS DP=46;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:7,12:1,8:6,4 +chr17 37453759 . AT A 0 PASS DP=29;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:9,3:3,2 +chr17 37812533 . TTTG T 0 PASS DP=34;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:2,3:7,1 +chr17 37840903 . T A 0 PASS DP=45;GPV=1;SPV=0.0005812;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:11,8:3,3 +chr17 37880005 . T TA 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,5:3,4 +chr17 39314795 . C CTT 0 PASS DP=32;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1 +chr17 40985156 . C A 0 PASS DP=66;GPV=1;SPV=0.00019486;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:18,8:7,6 +chr17 41110058 . A C 0 PASS DP=81;GPV=1;SPV=0.0091119;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,6:16,5 +chr17 41494407 . GT G 0 PASS DP=76;GPV=1;SPV=0.046045;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,4:20,1 +chr17 41844550 . T A 0 PASS DP=39;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,2:4,1:3,1 +chr17 42096902 . G A 0 PASS DP=41;GPV=1;SPV=0.0021297;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,3:5,5 +chr17 42668821 . G T 0 PASS DP=57;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,5:9,1:9,4 +chr17 42905430 . AT A 0 PASS DP=38;GPV=1;SPV=0.028751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,7:8,4 +chr17 42969401 . CTTTT C 0 PASS DP=29;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,9:3,7:2,2 +chr17 42990874 . G T 0 PASS DP=55;GPV=1;SPV=0.0024629;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2 +chr17 43657006 . TTCTTTC T 0 PASS DP=46;GPV=1;SPV=0.22036;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:5,2:23,2 +chr17 43719734 . G C 0 PASS DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:9,1:15,7 +chr17 43835250 . C CA 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr17 43931978 . TTC T 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,1:9,5 +chr17 44041277 . AAAAAAAAAAAC A 0 PASS DP=31;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:6,3:3,1 +chr17 44141903 . G A 0 PASS DP=89;GPV=1;SPV=1.9695e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:13,11:19,4 +chr17 44160573 . TA T 0 PASS DP=61;GPV=1;SPV=0.0010264;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,1:11,9 +chr17 44312367 . A C 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,2:8,8 +chr17 44414145 . G A 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,1:11,3 +chr17 44657378 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,4:5,1 +chr17 44727864 . AT A 0 PASS DP=41;GPV=1;SPV=0.011706;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,3:11,7 +chr17 44950763 . C CT 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,4:4,6 +chr17 45662311 . A T 0 PASS DP=62;GPV=1;SPV=0.0001093;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:10,12:13,6 +chr17 46245030 . A G 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,2:3,2 +chr17 46688576 . T C 0 PASS DP=28;GPV=1;SPV=0.00041408;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,3:2,5 +chr17 47653271 . A ATT 0 PASS DP=34;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,3:4,4 +chr17 47794116 . C T 0 PASS DP=76;GPV=1;SPV=0.00066634;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:10,8:23,5 +chr17 48069597 . C CA 0 PASS DP=28;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1 +chr17 49071922 . CT C 0 PASS DP=40;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:11,10:2,1 +chr17 49268682 . C T 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:21,2:15,2 +chr17 50128482 . TCA T 0 PASS DP=45;GPV=1;SPV=0.0019469;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:3,9:9,1 +chr17 50530493 . C T 0 PASS DP=49;GPV=1;SPV=0.031065;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,3:7,5 +chr17 51455573 . G GGTGTGT 0 PASS DP=60;GPV=1;SPV=0.0018565;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,7:9,5 +chr17 52285783 . CAA C 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,8:4,1 +chr17 53560037 . A T 0 PASS DP=60;GPV=1;SPV=0.0059126;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,5:9,1 +chr17 54778400 . G T 0 PASS DP=59;GPV=1;SPV=0.087068;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:25,3:7,2 +chr17 55128925 . C CT 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,4:2,1 +chr17 56495338 . A T 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr17 56616510 . A C 0 PASS DP=66;GPV=1;SPV=0.0052281;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:8,2:15,4 +chr17 56881321 . GTATATATATTTATATATAATATATGTATATATATATT G 0 PASS DP=25;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3 +chr17 57216321 . C CTGTGTG 0 PASS DP=41;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:3,6:6,2 +chr17 57632941 . C T 0 PASS DP=81;GPV=1;SPV=0.015393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:27,3:12,4 +chr17 57896767 . C CT 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr17 58074121 . T C 0 PASS DP=23;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:9,1:2,2 +chr17 58482709 . C CAAA 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr17 59015364 . G C 0 PASS DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,4:10,6 +chr17 59209081 . C CA 0 PASS DP=23;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:4,3:2,1 +chr17 60102060 . GTAAT G 0 PASS DP=49;GPV=1;SPV=0.0019854;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,6:9,1 +chr17 60982795 . T G 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:17,3:7,7 +chr17 61609694 . CA C 0 PASS DP=34;GPV=1;SPV=0.00050078;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,14:2,11:4,3 +chr17 61613251 . C T 0 PASS DP=64;GPV=1;SPV=0.10395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2 +chr17 62122094 . CA C 0 PASS DP=34;GPV=1;SPV=0.029588;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,8:5,2 +chr17 62356003 . A C 0 PASS DP=64;GPV=1;SPV=0.00025079;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,6:11,3 +chr17 62913422 . A C 0 PASS DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:7,4:14,1 +chr17 63942258 . GGTGTGTGTGT G 0 PASS DP=40;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,3:7,6 +chr17 65093583 . C CTT 0 PASS DP=27;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:7,4:5,1 +chr17 65566160 . G A 0 PASS DP=71;GPV=1;SPV=0.0034859;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:21,8:15,7 +chr17 66000371 . G A 0 PASS DP=60;GPV=1;SPV=0.00017604;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,6:11,9 +chr17 66038110 . A AAAAAAAAAAAG 0 PASS DP=25;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,6:0,3:0,3 +chr17 66169282 . C CTT 0 PASS DP=31;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,3:3,3 +chr17 66411242 . CT C 0 PASS DP=29;GPV=1;SPV=0.002451;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,10:0,6:1,4 +chr17 66694480 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:10,3:4,1 +chr17 66965185 . CATAT C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,4:9,2 +chr17 68575791 . T TACACACACACACACACAC 0 PASS DP=26;GPV=1;SPV=0.0067873;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,6:3,4:0,2 +chr17 68880247 . T A 0 PASS DP=56;GPV=1;SPV=0.0041203;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,2:11,6 +chr17 68880248 . C A 0 PASS DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,2:11,7 +chr17 69966706 . G T 0 PASS DP=52;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:1,1:2,1 +chr17 70472124 . T G 0 PASS DP=70;GPV=1;SPV=0.00059303;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:17,4:7,5 +chr17 70629593 . A C 0 PASS DP=58;GPV=1;SPV=0.074772;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:14,3:20,4 +chr17 71590803 . G T 0 PASS DP=48;GPV=1;SPV=0.014152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,5:10,5 +chr17 72809202 . T C 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:7,1:13,4 +chr17 73276046 . AT A 0 PASS DP=33;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:3,1:5,5 +chr17 74012978 . G GGAA 0 PASS DP=28;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:6,5:0,2 +chr17 75696377 . C A 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,2:7,6 +chr17 75805810 . A ATGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2 +chr17 76707291 . CTTTTTTTTTTTTTT C 0 PASS DP=31;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:3,3:6,2 +chr17 77216407 . T C 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,1:2,4 +chr17 77630903 . C CTT 0 PASS DP=22;GPV=1;SPV=0.026515;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:1,4:1,1 +chr17 78631456 . CA C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr17 79860195 . C T 0 PASS DP=73;GPV=1;SPV=0.043808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,3:16,2 +chr17 81426445 . G T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,2:2,2 +chr17 81613127 . T TAAA 0 PASS DP=42;GPV=1;SPV=0.0011057;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,11:2,5:0,6 +chr17 81646679 . C CAA 0 PASS DP=31;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,4:3,2 +chr17 81950348 . G A 0 PASS DP=31;GPV=1;SPV=0.00089264;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:4,4:4,8 +chr17 82198650 . C G 0 PASS DP=49;GPV=1;SPV=0.0081305;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,3:7,2 +chr17 82938894 . C T 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,2:4,3 +chr18 893183 . A AAT 0 PASS DP=20;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,2:0,2:0,0 +chr18 897058 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.0005865;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:2,3:0,6 +chr18 1962849 . C CT 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3 +chr18 2689852 . TAAAA T 0 PASS DP=20;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:4,5:0,1 +chr18 4034037 . C CT 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,2:4,3 +chr18 5538995 . A T 0 PASS DP=31;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,3:1,2:1,1 +chr18 5779294 . G T 0 PASS DP=43;GPV=1;SPV=0.10777;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:10,2:8,1 +chr18 6676936 . T A 0 PASS DP=50;GPV=1;SPV=2.9309e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:3,6:10,7 +chr18 7160890 . C CA 0 PASS DP=25;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0 +chr18 7410240 . C CAA 0 PASS DP=16;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr18 7968241 . C T 0 PASS DP=26;GPV=1;SPV=0.0084281;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr18 8855725 . C CAA 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,8:2,1 +chr18 10250784 . A G 0 PASS DP=29;GPV=1;SPV=0.0046977;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,14:2,10:4,4 +chr18 10733448 . A ATTT 0 PASS DP=32;GPV=1;SPV=0.012217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,7:1,5:1,2 +chr18 11849513 . A AG 0 PASS DP=58;GPV=1;SPV=0.17398;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr18 12285764 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,3:5,4 +chr18 12319132 . TCC T 0 PASS DP=39;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:4,1:8,3 +chr18 13743322 . C CA 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr18 13880126 . G A 0 PASS DP=39;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,4:9,2:9,2 +chr18 14672212 . A G 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr18 14689035 . G GTAAA 0 PASS DP=46;GPV=1;SPV=0.016865;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:4,5:9,3 +chr18 15317868 . CTAAT C 0 PASS DP=58;GPV=1;SPV=0.025917;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4 +chr18 15393025 . T TG 0 PASS DP=100;GPV=1;SPV=0.034393;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:20,4:25,9 +chr18 15519095 . A C 0 PASS DP=138;GPV=1;SPV=0.026373;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:15,2:61,9 +chr18 15521441 . A T 0 PASS DP=79;GPV=1;SPV=0.004315;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,10:17,3 +chr18 15530255 . A G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1 +chr18 15540190 . G T 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,4:1,0 +chr18 15601295 . C T 0 PASS DP=49;GPV=1;SPV=0.0006152;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3 +chr18 15662256 . A G 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0 +chr18 15679441 . T G 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2 +chr18 15691083 . G A 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:2,1:18,4 +chr18 15709768 . G C 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:1,0:34,4 +chr18 15875759 . A C 0 PASS DP=132;GPV=1;SPV=0.025693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:22,3:34,8 +chr18 17777501 . C T 0 PASS DP=42;GPV=1;SPV=0.24484;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:24,4:2,0 +chr18 19275617 . C G 0 PASS DP=97;GPV=1;SPV=0.03903;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:32,7:21,4 +chr18 21434499 . ATG A 0 PASS DP=38;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5 +chr18 21525014 . A G 0 PASS DP=35;GPV=1;SPV=0.011224;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4 +chr18 21815198 . T C 0 PASS DP=40;GPV=1;SPV=0.0089978;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:8,11:5,5 +chr18 22095497 . C G 0 PASS DP=73;GPV=1;SPV=0.000471;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:8,6:20,5 +chr18 22232784 . CCATA C 0 PASS DP=62;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,4:18,1:12,3 +chr18 22882407 . T C 0 PASS DP=73;GPV=1;SPV=2.2133e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:11,13:6,3 +chr18 23429287 . C T 0 PASS DP=57;GPV=1;SPV=0.012731;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:10,3:15,4 +chr18 24460380 . A C 0 PASS DP=58;GPV=1;SPV=0.015039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,8:9,4:7,4 +chr18 24460381 . C A 0 PASS DP=61;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,5:9,4:9,1 +chr18 25113764 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,2:6,2 +chr18 25113765 . C G 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2 +chr18 25806054 . T TC 0 PASS DP=45;GPV=1;SPV=0.2201;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,7:8,2:13,5 +chr18 25989683 . A G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,4:5,1 +chr18 26027701 . A G 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,2:7,3 +chr18 26208457 . G T 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,6:5,4 +chr18 26677728 . AAAG A 0 PASS DP=32;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:6,4:5,1 +chr18 29103921 . T G 0 PASS DP=62;GPV=1;SPV=0.083134;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,1:13,3 +chr18 29997088 . G A 0 PASS DP=44;GPV=1;SPV=0.0060788;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:2,5:13,7 +chr18 29997109 . A ATGCTGACAGTGATATAAACAATGAAGTCCAGGC 0 PASS DP=36;GPV=1;SPV=0.016716;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:1,4:12,2 +chr18 31960484 . TG T 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2 +chr18 32586426 . C A 0 PASS DP=48;GPV=1;SPV=0.011884;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,3:8,2 +chr18 32782481 . C T 0 PASS DP=18;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:0,0:4,2 +chr18 32841833 . G C 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,5:7,5 +chr18 33193264 . CAA C 0 PASS DP=24;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1 +chr18 33379173 . A AAT 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr18 33403489 . C CA 0 PASS DP=42;GPV=1;SPV=0.029259;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:13,5:6,2 +chr18 34095251 . A ATGTGTGTGTGTGTG 0 PASS DP=34;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:6,4:7,1 +chr18 34839177 . A C 0 PASS DP=86;GPV=1;SPV=2.655e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:8,3:15,10 +chr18 35957482 . G GAGAGAA 0 PASS DP=39;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:7,4:4,2 +chr18 37186564 . CAAA C 0 PASS DP=29;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:5,7:2,2 +chr18 37391026 . G A 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,5:12,8 +chr18 38275952 . G A 0 PASS DP=55;GPV=1;SPV=0.0062765;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:12,2:13,8 +chr18 40365027 . T C 0 PASS DP=61;GPV=1;SPV=0.00020252;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,5:10,6 +chr18 40381060 . G A 0 PASS DP=57;GPV=1;SPV=0.0059034;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,5:10,2 +chr18 40765834 . C CA 0 PASS DP=39;GPV=1;SPV=0.023838;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,3:7,4 +chr18 42154251 . C T 0 PASS DP=51;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:1,1:4,1 +chr18 42357665 . C T 0 PASS DP=27;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,1:6,3 +chr18 43077102 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,6:5,1 +chr18 44744769 . T TA 0 PASS DP=52;GPV=1;SPV=0.0017575;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,14:6,6:11,8 +chr18 45935610 . G GC 0 PASS DP=55;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,4:9,2:9,2 +chr18 46112884 . GTA G 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr18 48149805 . C CT 0 PASS DP=39;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:1,9:3,1 +chr18 48318214 . C CA 0 PASS DP=66;GPV=1;SPV=0.0002648;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:17,9:8,4 +chr18 48514634 . G A 0 PASS DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,3:9,2 +chr18 48891502 . CAATAAAATAAAATAAAATAA C 0 PASS DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:5,2:8,3 +chr18 49202916 . C T 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,1:9,7 +chr18 49945762 . GA G 0 PASS DP=37;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,5:5,2 +chr18 50325085 . TCTCCTTCCTCCTCCTTCCTC T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,2:6,6 +chr18 50670756 . C CA 0 PASS DP=28;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,3:5,1 +chr18 50689404 . TA T 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,2:5,4 +chr18 50786538 . A ATTTT 0 PASS DP=29;GPV=1;SPV=0.20705;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr18 50956895 . G GA 0 PASS DP=43;GPV=1;SPV=0.035509;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,10:12,9:4,1 +chr18 51508914 . C CAAA 0 PASS DP=37;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:10,7:1,1 +chr18 51614342 . C T 0 PASS DP=60;GPV=1;SPV=0.0017532;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,3:15,8 +chr18 52226373 . G T 0 PASS DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:5,2:17,3 +chr18 53393914 . C CCTCTCTCTCTCTCT 0 PASS DP=42;GPV=1;SPV=0.0025253;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:3,5:5,5 +chr18 53546311 . C G 0 PASS DP=59;GPV=1;SPV=1.9941e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:7,5:10,9 +chr18 56053026 . T A 0 PASS DP=57;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:3,1:0,1 +chr18 57850556 . T G 0 PASS DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:9,3:14,2 +chr18 57899019 . TGA T 0 PASS DP=46;GPV=1;SPV=0.011302;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,2:13,7 +chr18 58403774 . G C 0 PASS DP=61;GPV=1;SPV=3.1184e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,6:11,5 +chr18 58629563 . T TCACACACACA 0 PASS DP=48;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,6:3,3:1,3 +chr18 58630618 . T C 0 PASS DP=64;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,7:9,1:11,6 +chr18 58767872 . G A 0 PASS DP=49;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,4:8,1:7,3 +chr18 58936654 . A AT 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:13,6:14,2 +chr18 58940923 . T TACACAC 0 PASS DP=35;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,8:8,6:3,2 +chr18 60393218 . T TG 0 PASS DP=44;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:6,5:7,4 +chr18 60405026 . G T 0 PASS DP=67;GPV=1;SPV=0.0090805;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:10,3:16,3 +chr18 61924367 . C G 0 PASS DP=42;GPV=1;SPV=0.039556;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:6,2:12,3 +chr18 61971234 . T G 0 PASS DP=30;GPV=1;SPV=0.024751;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,3:2,4 +chr18 62063292 . G T 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3 +chr18 62502260 . GA G 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1 +chr18 62727227 . CA C 0 PASS DP=24;GPV=1;SPV=0.0087495;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2 +chr18 63431086 . TGC T 0 PASS DP=57;GPV=1;SPV=0.030521;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,4:12,2 +chr18 63431089 . T A 0 PASS DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:16,4:16,2 +chr18 63431090 . C A 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:14,4:15,1 +chr18 63756804 . T TTG 0 PASS DP=44;GPV=1;SPV=0.0040786;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,17:4,9:2,8 +chr18 66361535 . C T 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,3:6,2 +chr18 67081282 . G A 0 PASS DP=65;GPV=1;SPV=0.00016784;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,5:9,5 +chr18 67515903 . T C 0 PASS DP=46;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,2:2,1:4,1 +chr18 68469761 . G GGAGAAGAGAAGAGAA 0 PASS DP=24;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:6,4:0,0 +chr18 69335023 . T A 0 PASS DP=67;GPV=1;SPV=0.00099736;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:14,10:16,5 +chr18 70444986 . GTTTTT G 0 PASS DP=25;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:7,3:4,1 +chr18 71000492 . C T 0 PASS DP=53;GPV=1;SPV=0.0048426;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,4:11,4 +chr18 71399982 . G T 0 PASS DP=75;GPV=1;SPV=0.0011743;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:18,8:14,3 +chr18 71568486 . A T 0 PASS DP=69;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:19,1:13,3 +chr18 72630564 . C CAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,4:12,2 +chr18 73093799 . A T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:7,2:14,5 +chr18 73206219 . G GACACAC 0 PASS DP=31;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:4,4:1,3 +chr18 73912644 . A ATATATATATATATATACACATATG 0 PASS DP=39;GPV=1;SPV=0.15197;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:9,2:12,4 +chr18 74843635 . C T 0 PASS DP=53;GPV=1;SPV=0.0025391;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,7:10,4 +chr18 76611781 . C T 0 PASS DP=17;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1 +chr18 77690391 . GTCTC G 0 PASS DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,1:21,3 +chr18 79016934 . G C 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr18 79356880 . A G 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,1:4,5 +chr18 79610227 . C T 0 PASS DP=56;GPV=1;SPV=0.064666;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr18 79815441 . C CA 0 PASS DP=27;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:4,7:3,1 +chr19 304172 . A ACAC 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr19 395904 . C T 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1 +chr19 411240 . C A 0 PASS DP=108;GPV=1;SPV=0.031091;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:18,4:25,6 +chr19 650009 . G A 0 PASS DP=36;GPV=1;SPV=0.21475;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1 +chr19 744061 . G T 0 PASS DP=57;GPV=1;SPV=0.00010641;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:10,5:9,9 +chr19 1194866 . CTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1 +chr19 1339033 . C CA 0 PASS DP=50;GPV=1;SPV=0.021468;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:18,9:2,1 +chr19 1727735 . T TAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.025265;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:6,6:7,3 +chr19 1832914 . C CA 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,3:7,1 +chr19 2817957 . A G 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,2:9,3 +chr19 2928844 . T C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr19 3595078 . T TA 0 PASS DP=58;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:10,8:12,2 +chr19 3648530 . G A 0 PASS DP=62;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,4:18,1:13,3 +chr19 3885109 . T TAA 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,4:6,1 +chr19 4104265 . T TA 0 PASS DP=38;GPV=1;SPV=0.013127;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,6:3,1 +chr19 4899765 . A T 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:3,3:6,1 +chr19 5518924 . A AG 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,6:6,2 +chr19 6082293 . CA C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,8:5,1 +chr19 7231304 . T G 0 PASS DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,2:12,4 +chr19 7772054 . C A 0 PASS DP=39;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:9,2:9,2 +chr19 7925704 . C A 0 PASS DP=86;GPV=1;SPV=5.5134e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:10,5:25,12 +chr19 8781507 . G A 0 PASS DP=259;GPV=1;SPV=0.01982;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:127,23:36,8:91,15 +chr19 8901307 . TAATAAAATAAAATAAAATAA T 0 PASS DP=43;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,5:7,4 +chr19 9058423 . C G 0 PASS DP=79;GPV=1;SPV=6.6761e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:13,6:15,7 +chr19 9169265 . T TATATATATATA 0 PASS DP=27;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,1:1,3 +chr19 10301479 . G GTT 0 PASS DP=24;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:1,5:2,2 +chr19 10319259 . A G 0 PASS DP=69;GPV=1;SPV=6.2544e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:12,9:12,5 +chr19 10676260 . GTTTGTTTTTTTTTTTTTT G 0 PASS DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,3:5,4 +chr19 11293076 . AT A 0 PASS DP=24;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:1,4:0,3 +chr19 11414323 . TCATA T 0 PASS DP=27;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:6,1:3,3 +chr19 13340426 . T A 0 PASS DP=47;GPV=1;SPV=0.0625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,3:3,2:1,1 +chr19 13486366 . G C 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1 +chr19 14080097 . T TATAATAATA 0 PASS DP=38;GPV=1;SPV=0.081016;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:11,2:6,5 +chr19 14551950 . T C 0 PASS DP=31;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,4:0,2:6,2 +chr19 14611371 . CT C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,3:3,4 +chr19 15228503 . ATTTTT A 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,3:4,2 +chr19 15650835 . T TC 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,1:10,3 +chr19 15812665 . CAGGA C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr19 16063886 . G T 0 PASS DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,2:14,6 +chr19 17147672 . AT A 0 PASS DP=27;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,3:5,3 +chr19 17896824 . A ATT 0 PASS DP=30;GPV=1;SPV=0.01246;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:4,4:6,3 +chr19 17967502 . C A 0 PASS DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,3:11,1 +chr19 18111530 . C CT 0 PASS DP=31;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,8:4,2 +chr19 20397289 . A G 0 PASS DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3 +chr19 20528117 . C T 0 PASS DP=68;GPV=1;SPV=0.0004496;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,8:11,3 +chr19 21051790 . A G 0 PASS DP=75;GPV=1;SPV=0.00057029;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,3:17,7 +chr19 23184370 . A T 0 PASS DP=60;GPV=1;SPV=0.00089447;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:13,5:11,7 +chr19 23753601 . A G 0 PASS DP=64;GPV=1;SPV=0.011254;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,2:9,7 +chr19 24369075 . AAC A 0 PASS DP=128;GPV=1;SPV=0.012591;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:24,8:21,7 +chr19 24386451 . G T 0 PASS DP=133;GPV=1;SPV=0.024137;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:33,5:24,2 +chr19 24441846 . C G 0 PASS DP=63;GPV=1;SPV=0.081913;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:13,3:21,2 +chr19 25010777 . A T 0 PASS DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr19 26422867 . A G 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0 +chr19 26813246 . G C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr19 27127720 . A T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:26,4:2,0 +chr19 27374600 . T A 0 PASS DP=186;GPV=1;SPV=0.043887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:46,10:39,9 +chr19 28625367 . C G 0 PASS DP=68;GPV=1;SPV=0.00078261;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,4:15,5 +chr19 29434503 . G T 0 PASS DP=63;GPV=1;SPV=0.0014364;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:9,5:16,5 +chr19 33095770 . GTCAAA G 0 PASS DP=50;GPV=1;SPV=0.0084701;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,3:11,3 +chr19 33131273 . G T 0 PASS DP=40;GPV=1;SPV=0.019439;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2 +chr19 33133196 . T TAGAG 0 PASS DP=47;GPV=1;SPV=0.023235;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,8:9,6:10,2 +chr19 33146482 . T C 0 PASS DP=36;GPV=1;SPV=0.021073;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:2,4:8,1 +chr19 33887997 . C T 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,1:13,3 +chr19 34314746 . G T 0 PASS DP=82;GPV=1;SPV=0.0046499;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:13,6:25,3 +chr19 35226147 . TC T 0 PASS DP=67;GPV=1;SPV=0.006186;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,5:12,2 +chr19 35359770 . T C 0 PASS DP=89;GPV=1;SPV=0.044605;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:14,3:27,11 +chr19 35444428 . CT C 0 PASS DP=28;GPV=1;SPV=0.03285;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr19 35983551 . G T 0 PASS DP=63;GPV=1;SPV=8.4921e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:7,8:11,7 +chr19 36316392 . A AG 0 PASS DP=52;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3 +chr19 36365959 . C CAA 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,3:4,6 +chr19 37035408 . A C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,2:11,3 +chr19 37214962 . T TA 0 PASS DP=33;GPV=1;SPV=0.008837;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:8,5:2,1 +chr19 37268475 . C CT 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2 +chr19 38116538 . A AAAAAG 0 PASS DP=32;GPV=1;SPV=0.0031609;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:4,3:4,4 +chr19 38317561 . G GT 0 PASS DP=54;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,5:9,9 +chr19 38351607 . C CA 0 PASS DP=36;GPV=1;SPV=0.0051998;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:2,8:8,7 +chr19 38736467 . TTTGACCAAGCCCCAGGGCAGG T 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,1:13,3 +chr19 39893575 . G C 0 PASS DP=95;GPV=1;SPV=0.00090425;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:22,4:23,9 +chr19 41365708 . T G 0 PASS DP=34;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:5,2:1,1 +chr19 42309064 . C A 0 PASS DP=71;GPV=1;SPV=0.00030325;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,8:13,5 +chr19 42326740 . T C 0 PASS DP=36;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:4,1:0,1 +chr19 42826320 . A C 0 PASS DP=60;GPV=1;SPV=0.00068948;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:10,4:14,9 +chr19 43057377 . G T 0 PASS DP=68;GPV=1;SPV=0.00015269;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:7,10:20,7 +chr19 43516623 . C CTT 0 PASS DP=21;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:1,6:1,1 +chr19 46060873 . C A 0 PASS DP=64;GPV=1;SPV=0.00011238;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,5:11,8 +chr19 46846442 . T G 0 PASS DP=43;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:6,1:1,1 +chr19 47816529 . A AT 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr19 47884804 . C CT 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,5:6,1 +chr19 47921144 . T C 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,2:14,4 +chr19 47924231 . G C 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,1:7,5 +chr19 48101126 . A T 0 PASS DP=24;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,3:2,3 +chr19 49025212 . T C 0 PASS DP=58;GPV=1;SPV=0.037233;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:18,3:13,5 +chr19 49318868 . A ATTT 0 PASS DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr19 49758152 . C T 0 PASS DP=55;GPV=1;SPV=0.0089139;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,8:13,4 +chr19 50136384 . G T 0 PASS DP=377;GPV=1;SPV=0.049534;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:211:186,24:99,15:87,9 +chr19 50170961 . CA C 0 PASS DP=50;GPV=1;SPV=0.016084;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,9:6,2 +chr19 50623613 . CAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,10:7,8:2,2 +chr19 50993513 . CAAA C 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,7:3,2 +chr19 51090116 . C G 0 PASS DP=74;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:13,5:15,7 +chr19 51120845 . C CT 0 PASS DP=38;GPV=1;SPV=0.04669;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:15,6:3,1 +chr19 53060604 . C T 0 PASS DP=71;GPV=1;SPV=9.3193e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:14,5:11,8 +chr19 53914273 . C CAAAAAAA 0 PASS DP=42;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:16,4:3,1 +chr19 54914841 . G C 0 PASS DP=58;GPV=1;SPV=0.0005758;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,7:7,3 +chr19 55082948 . A T 0 PASS DP=56;GPV=1;SPV=0.011603;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,4:7,2 +chr19 57179200 . TTC T 0 PASS DP=53;GPV=1;SPV=0.039973;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:10,5:11,3 +chr19 58171286 . C T 0 PASS DP=36;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:7,1:2,5 +chr19 58349648 . C CA 0 PASS DP=33;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,6:3,2 +chr19 58405212 . C T 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,1:6,7 +chr19 58427348 . TC T 0 PASS DP=33;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,4:0,2:3,2 +chr2 686134 . A G 0 PASS DP=55;GPV=1;SPV=4.6765e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,6:8,7 +chr2 823560 . T G 0 PASS DP=55;GPV=1;SPV=0.00011829;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:4,5:13,7 +chr2 868396 . C A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,2:8,3 +chr2 2773501 . A C 0 PASS DP=60;GPV=1;SPV=0.00024707;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,7:9,4 +chr2 3510143 . CA C 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,9:4,1 +chr2 3530344 . T TGG 0 PASS DP=22;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,2:2,2 +chr2 3892603 . C T 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,7:14,5 +chr2 3923534 . T G 0 PASS DP=48;GPV=1;SPV=0.00053926;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,5:3,3 +chr2 4622211 . G T 0 PASS DP=79;GPV=1;SPV=0.00044128;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:14,5:15,5 +chr2 4871563 . A G 0 PASS DP=63;GPV=1;SPV=0.0002055;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,5:13,7 +chr2 5573348 . AAAT A 0 PASS DP=33;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,4:6,6 +chr2 6016362 . T C 0 PASS DP=42;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,5:9,2:3,3 +chr2 6217503 . G A 0 PASS DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,3:15,7 +chr2 6504952 . C T 0 PASS DP=23;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:4,1:1,1 +chr2 7085270 . C CTTTTT 0 PASS DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr2 7315365 . G A 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr2 9079486 . C T 0 PASS DP=60;GPV=1;SPV=0.00083483;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6 +chr2 9514674 . C A 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,6:2,3 +chr2 9721949 . T G 0 PASS DP=56;GPV=1;SPV=0.002188;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,3:9,5 +chr2 10007354 . T TTACTATTATTATTACTACTAC 0 PASS DP=43;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:6,4:8,4 +chr2 10206245 . C CA 0 PASS DP=36;GPV=1;SPV=0.01286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,9:7,1 +chr2 10942692 . A G 0 PASS DP=66;GPV=1;SPV=0.00012491;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,6:15,8 +chr2 11419508 . A AAAAC 0 PASS DP=36;GPV=1;SPV=0.0044617;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:6,9:4,5 +chr2 12123234 . TC T 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1 +chr2 12369609 . C A 0 PASS DP=53;GPV=1;SPV=0.00068121;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,6:12,7 +chr2 14716789 . C T 0 PASS DP=69;GPV=1;SPV=0.0048249;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,3:19,6 +chr2 15723517 . T G 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr2 16279194 . C T 0 PASS DP=57;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:16,5:5,1:11,4 +chr2 17353616 . C A 0 PASS DP=71;GPV=1;SPV=6.5042e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:12,9:11,9 +chr2 17839195 . TA T 0 PASS DP=29;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,5:3,1 +chr2 19144887 . CA C 0 PASS DP=41;GPV=1;SPV=0.0062663;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,14:9,10:7,4 +chr2 22050337 . A C 0 PASS DP=74;GPV=1;SPV=0.012493;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:4,4:30,3 +chr2 22659875 . GCT G 0 PASS DP=35;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,14:1,7:2,7 +chr2 23120687 . GCGCA G 0 PASS DP=52;GPV=1;SPV=0.0047709;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,13:11,9:6,4 +chr2 23714239 . CT C 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:3,7:11,3 +chr2 23899918 . CTT C 0 PASS DP=30;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,3:5,3 +chr2 23942967 . C CT 0 PASS DP=33;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,4:5,4 +chr2 24912585 . GCA G 0 PASS DP=48;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,4:8,1:7,3 +chr2 25224723 . TTATTA T 0 PASS DP=43;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,13:1,8:5,5 +chr2 25625551 . ATT A 0 PASS DP=29;GPV=1;SPV=0.29515;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:8,3:2,3 +chr2 25728041 . A ATG 0 PASS DP=44;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:10,6:6,3 +chr2 26995780 . G GGTGTGTGTGT 0 PASS DP=44;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:9,5:3,4 +chr2 27691592 . C CTT 0 PASS DP=41;GPV=1;SPV=0.0069071;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,7:6,3 +chr2 28461572 . C CAAAATAAAATAAATAAAAT 0 PASS DP=38;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:5,3:7,11 +chr2 29717171 . C CAAAA 0 PASS DP=28;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:4,3:5,1 +chr2 30681899 . C CT 0 PASS DP=31;GPV=1;SPV=0.17647;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,7:5,6:2,1 +chr2 32001032 . A AT 0 PASS DP=33;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,5:8,1 +chr2 32930451 . A G 0 PASS DP=78;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,5:14,2:8,3 +chr2 33476728 . C CCT 0 PASS DP=35;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:4,7:6,2 +chr2 35007269 . CA C 0 PASS DP=41;GPV=1;SPV=0.028792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3 +chr2 36506181 . TCACA T 0 PASS DP=38;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,5:9,2:9,3 +chr2 37968438 . C CA 0 PASS DP=30;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:4,5:2,1 +chr2 38164595 . C CACATATATATATATAT 0 PASS DP=31;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3 +chr2 38253252 . G GT 0 PASS DP=53;GPV=1;SPV=0.0025391;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,4:10,7 +chr2 38392479 . C CCAG 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:4,9:0,1 +chr2 39010899 . T C 0 PASS DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3 +chr2 39045273 . A AGTGTGT 0 PASS DP=32;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,4:8,3:1,1 +chr2 39648042 . G GTTTT 0 PASS DP=36;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:9,7:2,1 +chr2 42018932 . AAAAAGAAAAG A 0 PASS DP=36;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,8:2,4:9,4 +chr2 42060586 . G A 0 PASS DP=57;GPV=1;SPV=0.030521;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:10,2:17,4 +chr2 42060587 . T A 0 PASS DP=39;GPV=1;SPV=0.092279;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chr2 42409722 . AAAAAAAAT A 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr2 43046823 . ATCTCTCTCTC A 0 PASS DP=28;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,3:11,1 +chr2 43297376 . T C 0 PASS DP=17;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,4:0,1 +chr2 43455520 . A T 0 PASS DP=59;GPV=1;SPV=0.031253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,7:13,4:5,3 +chr2 44457350 . A C 0 PASS DP=69;GPV=1;SPV=0.00026731;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:15,10:13,5 +chr2 45611225 . G A 0 PASS DP=76;GPV=1;SPV=4.6208e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:12,13:6,6 +chr2 46855243 . TCACACACACACA T 0 PASS DP=30;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,7:2,1:1,6 +chr2 48834300 . G A 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,5:9,5 +chr2 49257453 . C CTTTT 0 PASS DP=34;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:10,2:6,3 +chr2 50352778 . T A 0 PASS DP=38;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:6,3:10,1 +chr2 51504651 . TGC T 0 PASS DP=27;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,4:2,3:4,1 +chr2 51778275 . CA C 0 PASS DP=36;GPV=1;SPV=0.00095347;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,7:3,6:1,1 +chr2 51983544 . C G 0 PASS DP=56;GPV=1;SPV=0.011603;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:8,4:14,2 +chr2 52334968 . A C 0 PASS DP=63;GPV=1;SPV=0.00031271;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:14,3:9,9 +chr2 52449055 . G GTAGTAATAATAATAATAATAA 0 PASS DP=35;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,1:7,5 +chr2 52852312 . T TG 0 PASS DP=58;GPV=1;SPV=0.0035088;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:8,9:5,2 +chr2 54237533 . G A 0 PASS DP=69;GPV=1;SPV=0.00069999;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:14,4:8,4 +chr2 54513707 . T G 0 PASS DP=62;GPV=1;SPV=0.00086088;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,5:9,5 +chr2 55728945 . C G 0 PASS DP=65;GPV=1;SPV=2.728e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,6:6,9 +chr2 56430889 . T G 0 PASS DP=63;GPV=1;SPV=0.00020585;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:14,6:10,9 +chr2 56450099 . G GTT 0 PASS DP=23;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:8,3:1,2 +chr2 57116261 . G A 0 PASS DP=64;GPV=1;SPV=0.0045171;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,7:14,2 +chr2 57569891 . C A 0 PASS DP=77;GPV=1;SPV=0.001022;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,5:16,5 +chr2 59467199 . GTTCATGGCATC G 0 PASS DP=50;GPV=1;SPV=0.00092621;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:10,6:8,5 +chr2 59755611 . C CT 0 PASS DP=44;GPV=1;SPV=0.001853;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:8,7:2,4 +chr2 59892090 . T A 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:10,8:14,4 +chr2 60901148 . CT C 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3 +chr2 60901151 . T C 0 PASS DP=24;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:6,1:0,2 +chr2 61572716 . CT C 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,4:0,2 +chr2 62357869 . C CA 0 PASS DP=37;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:9,2:7,3 +chr2 65218878 . CA C 0 PASS DP=25;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0 +chr2 66341454 . T A 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1 +chr2 66794702 . T A 0 PASS DP=47;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,4:8,3:6,1 +chr2 68170747 . C CA 0 PASS DP=45;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,6:10,5:2,1 +chr2 68760882 . T A 0 PASS DP=59;GPV=1;SPV=0.26383;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,5:9,3:11,2 +chr2 69027621 . A AGTGTGTGTGTGT 0 PASS DP=34;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:9,1:5,5 +chr2 69639050 . T A 0 PASS DP=56;GPV=1;SPV=0.0036826;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,6:13,4 +chr2 70293546 . C G 0 PASS DP=77;GPV=1;SPV=6.2443e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,6:11,5 +chr2 70637928 . A AAAAATAAAAT 0 PASS DP=38;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:4,4:7,3 +chr2 71097711 . C T 0 PASS DP=36;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,6:6,5:3,1 +chr2 71521673 . T A 0 PASS DP=72;GPV=1;SPV=7.7661e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,8:13,6 +chr2 71618566 . GTT G 0 PASS DP=45;GPV=1;SPV=0.16209;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:15,1:7,2 +chr2 72144081 . C G 0 PASS DP=100;GPV=1;SPV=0.0019761;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:24,5:24,6 +chr2 74135948 . C CT 0 PASS DP=32;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,9:2,8:1,1 +chr2 75813568 . C CT 0 PASS DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3 +chr2 76443314 . C CTT 0 PASS DP=30;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:1,6:5,4 +chr2 77648462 . T G 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:3,8:4,5 +chr2 78093492 . A AT 0 PASS DP=52;GPV=1;SPV=0.0082887;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,7:15,3 +chr2 78710692 . A AAAGGAAGG 0 PASS DP=39;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:4,4:11,1 +chr2 79056095 . CA C 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6 +chr2 79521107 . GATATATATATATATATATATATATATATATAT G 0 PASS DP=27;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:4,1:3,3 +chr2 82053878 . A G 0 PASS DP=45;GPV=1;SPV=0.0040548;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:3,8:12,5 +chr2 82182734 . TC T 0 PASS DP=37;GPV=1;SPV=0.042901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,3:6,2 +chr2 82182736 . C G 0 PASS DP=38;GPV=1;SPV=0.03771;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,3:7,2 +chr2 82182739 . ACTCTC A 0 PASS DP=39;GPV=1;SPV=0.045519;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,3:7,2 +chr2 82441284 . C T 0 PASS DP=57;GPV=1;SPV=0.0037091;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,4:11,2 +chr2 82784939 . G A 0 PASS DP=53;GPV=1;SPV=0.033516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,2:13,7 +chr2 85328781 . A T 0 PASS DP=61;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:1,4:0,1:1,3 +chr2 86303212 . GT G 0 PASS DP=35;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:5,4:5,1 +chr2 86905522 . G T 0 PASS DP=60;GPV=1;SPV=0.038493;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,11:11,2 +chr2 87018492 . C A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr2 87214518 . G T 0 PASS DP=93;GPV=1;SPV=0.0037978;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:13,9:19,7 +chr2 87222922 . GGT G 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,2:6,6 +chr2 87236895 . CA C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1 +chr2 87429621 . C A 0 PASS DP=56;GPV=1;SPV=0.064666;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chr2 87429622 . A G 0 PASS DP=53;GPV=1;SPV=0.059209;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,2:12,3 +chr2 87430689 . AAGCC A 0 PASS DP=161;GPV=1;SPV=0.02276;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:68,15:34,5:34,10 +chr2 88983107 . A G 0 PASS DP=89;GPV=1;SPV=0.018478;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,3:19,3 +chr2 89592132 . C T 0 PASS DP=53;GPV=1;SPV=0.00069917;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:1,3:10,7 +chr2 89617384 . AAT A 0 PASS DP=76;GPV=1;SPV=0.029803;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,7:18,4 +chr2 89836731 . T A 0 PASS DP=73;GPV=1;SPV=0.0094399;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:21,3:11,4 +chr2 89909729 . C T 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:8,8:0,1 +chr2 89919282 . C T 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr2 90294162 . G A 0 PASS DP=77;GPV=1;SPV=0.043004;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,5:16,2 +chr2 90312003 . G A 0 PASS DP=75;GPV=1;SPV=0.002038;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:7,4:16,7 +chr2 90321917 . T C 0 PASS DP=78;GPV=1;SPV=0.046456;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:19,1:16,6 +chr2 90332248 . TTA T 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr2 90356850 . A ATT 0 PASS DP=137;GPV=1;SPV=0.045905;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:28,6:28,5 +chr2 90382966 . A G 0 PASS DP=217;GPV=1;SPV=0.040517;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:102,17:11,2:91,15 +chr2 90401914 . T A 0 PASS DP=267;GPV=1;SPV=0.028609;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:142,17:61,10:81,7 +chr2 91426791 . A G 0 PASS DP=417;GPV=1;SPV=0.027406;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:196,31:125,20:71,11 +chr2 91442435 . C A 0 PASS DP=127;GPV=1;SPV=0.024717;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,15:21,5:27,10 +chr2 91458943 . C G 0 PASS DP=66;GPV=1;SPV=0.0053553;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:23,9:9,2 +chr2 91496251 . C CAAAAA 0 PASS DP=116;GPV=1;SPV=0.038126;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,8:28,7:23,1 +chr2 91516287 . C A 0 PASS DP=44;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,4:9,1 +chr2 91519296 . G A 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr2 91542845 . C CGT 0 PASS DP=71;GPV=1;SPV=0.032792;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,12:16,7:12,5 +chr2 91545052 . G A 0 PASS DP=46;GPV=1;SPV=0.0050385;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,8:6,2 +chr2 91551347 . A C 0 PASS DP=137;GPV=1;SPV=0.0093814;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:32,4:38,4 +chr2 91675456 . A G 0 PASS DP=61;GPV=1;SPV=0.032567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:8,5:17,6 +chr2 92132618 . A G 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,1:12,3 +chr2 92249636 . A C 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:6,3:26,1 +chr2 92254569 . G C 0 PASS DP=121;GPV=1;SPV=0.011495;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:28,5:29,5 +chr2 92261556 . T A 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,1:6,3 +chr2 92276085 . T G 0 PASS DP=209;GPV=1;SPV=0.027257;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:94,17:33,8:61,9 +chr2 92309923 . A G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr2 92309928 . T A 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr2 92383293 . A G 0 PASS DP=71;GPV=1;SPV=0.019781;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:22,8:3,3 +chr2 92499753 . T G 0 PASS DP=139;GPV=1;SPV=0.027282;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:54,7:20,3 +chr2 92533519 . G T 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1 +chr2 92556579 . A T 0 PASS DP=268;GPV=1;SPV=0.0026044;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:133,25:101,20:32,5 +chr2 92728437 . A G 0 PASS DP=47;GPV=1;SPV=0.20161;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:2,0:26,4 +chr2 92759321 . C G 0 PASS DP=24;GPV=1;SPV=0.17984;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:5,1:6,2 +chr2 92774895 . C A 0 PASS DP=129;GPV=1;SPV=0.035957;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:8,2:51,5 +chr2 92839048 . T A 0 PASS DP=171;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:77,13:38,2:39,11 +chr2 92839081 . G A 0 PASS DP=182;GPV=1;SPV=0.041615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:78,19:24,6:54,13 +chr2 92889972 . CAT C 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr2 93001964 . C T 0 PASS DP=73;GPV=1;SPV=0.025228;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,6:11,1 +chr2 93009752 . C T 0 PASS DP=85;GPV=1;SPV=0.074238;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:41,5:9,1 +chr2 93039692 . T G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:18,4:2,0 +chr2 93040550 . C G 0 PASS DP=99;GPV=1;SPV=0.029623;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:20,1:25,4 +chr2 93042746 . G T 0 PASS DP=24;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 93087515 . T C 0 PASS DP=70;GPV=1;SPV=0.11326;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:16,4:25,1 +chr2 93096128 . T A 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0 +chr2 93097106 . C G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr2 93100515 . T G 0 PASS DP=158;GPV=1;SPV=0.035602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:51,7:24,5 +chr2 93151427 . T A 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4 +chr2 93255109 . G T 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr2 93265760 . A C 0 PASS DP=182;GPV=1;SPV=0.020561;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:88,11:82,9:6,2 +chr2 93316463 . G C 0 PASS DP=19;GPV=1;SPV=0.17028;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:8,3:0,0 +chr2 93332537 . A G 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3 +chr2 93473588 . C G 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:22,1:4,3 +chr2 93628626 . A C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3 +chr2 93641763 . G A 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:3,2:9,5 +chr2 93694069 . G A 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr2 93821099 . A G 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:13,7:2,1 +chr2 93961018 . T A 0 PASS DP=41;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:4,1:14,4 +chr2 93972780 . T G 0 PASS DP=75;GPV=1;SPV=0.048464;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,2:21,2 +chr2 94084851 . A C 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,3:14,1 +chr2 94087228 . G A 0 PASS DP=81;GPV=1;SPV=0.0071633;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:20,3:11,3 +chr2 94156216 . A AG 0 PASS DP=32;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,1:6,4 +chr2 94156217 . A T 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,1:5,5 +chr2 94156218 . A T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3 +chr2 94995255 . G T 0 PASS DP=46;GPV=1;SPV=0.19632;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,3:17,1:6,2 +chr2 94995261 . GC G 0 PASS DP=55;GPV=1;SPV=0.096964;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,5:18,2:11,3 +chr2 94995266 . G GC 0 PASS DP=59;GPV=1;SPV=0.06862;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,7:15,3:9,4 +chr2 95543732 . T G 0 PASS DP=68;GPV=1;SPV=0.010404;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:21,5:11,3 +chr2 96060658 . T C 0 PASS DP=122;GPV=1;SPV=0.016173;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:52,19:24,15:28,4 +chr2 96805418 . G GT 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:9,7:0,2 +chr2 97012153 . A AAAATAAAT 0 PASS DP=55;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,8:10,1 +chr2 97588780 . A G 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,1:4,5 +chr2 97665723 . CTCTCTCTCTCTCTCTATA C 0 PASS DP=35;GPV=1;SPV=0.17028;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:2,4:6,4 +chr2 97979503 . A G 0 PASS DP=46;GPV=1;SPV=0.015826;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,5:10,5 +chr2 101712903 . CT C 0 PASS DP=30;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,8:5,2 +chr2 106289319 . G T 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:20,1:9,3 +chr2 107433356 . A G 0 PASS DP=50;GPV=1;SPV=0.083772;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,8:9,4:6,4 +chr2 108098643 . A T 0 PASS DP=48;GPV=1;SPV=0.026352;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,3:11,7 +chr2 108360003 . A G 0 PASS DP=32;GPV=1;SPV=0.0094843;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:1,4:8,7 +chr2 108452847 . C A 0 PASS DP=56;GPV=1;SPV=0.074614;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2 +chr2 108500159 . T C 0 PASS DP=60;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:0,2:0,2:0,0 +chr2 109185314 . T G 0 PASS DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:12,2:9,6 +chr2 111351928 . A AT 0 PASS DP=59;GPV=1;SPV=0.036735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,9:11,5:10,4 +chr2 111639504 . T C 0 PASS DP=64;GPV=1;SPV=0.075514;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:12,2:22,3 +chr2 112167884 . TG T 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2 +chr2 112388323 . A C 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,4:12,1 +chr2 113520484 . A C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,1:13,4 +chr2 113562784 . T C 0 PASS DP=86;GPV=1;SPV=0.017729;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:22,2:14,6 +chr2 113587861 . TCTGCCCTCACTGTGCAATTCCAGGAGTGTTTTTCCTTC T 0 PASS DP=126;GPV=1;SPV=0.042403;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:37,3:22,9 +chr2 113597419 . G A 0 PASS DP=65;GPV=1;SPV=0.054436;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:23,4:12,2 +chr2 113693857 . CTTT C 0 PASS DP=32;GPV=1;SPV=0.0083313;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:7,7:4,2 +chr2 116864344 . T A 0 PASS DP=40;GPV=1;SPV=0.01315;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4 +chr2 116873420 . CTGT C 0 PASS DP=49;GPV=1;SPV=0.0027601;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:7,7:7,7 +chr2 117652617 . T G 0 PASS DP=30;GPV=1;SPV=0.013487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,2:2,4 +chr2 117652670 . A AAG 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,3:2,1 +chr2 118620788 . C T 0 PASS DP=54;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2 +chr2 119360512 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4 +chr2 120680498 . C G 0 PASS DP=18;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr2 121799626 . G C 0 PASS DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,4:14,2 +chr2 122793789 . T A 0 PASS DP=51;GPV=1;SPV=0.1439;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3 +chr2 123567325 . C CAAAAAA 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr2 124296151 . G A 0 PASS DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:16,7:4,3 +chr2 124317198 . A G 0 PASS DP=52;GPV=1;SPV=0.0047364;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,3:14,8 +chr2 125499797 . CT C 0 PASS DP=39;GPV=1;SPV=0.0060611;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:5,8:6,3 +chr2 125798730 . A T 0 PASS DP=67;GPV=1;SPV=0.0024512;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:24,9:8,5 +chr2 125854365 . G C 0 PASS DP=68;GPV=1;SPV=0.001166;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:12,4:18,9 +chr2 125891353 . GTA G 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:3,4:0,0 +chr2 125988641 . A AT 0 PASS DP=60;GPV=1;SPV=0.0035375;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,1:7,5 +chr2 127221243 . ATTTTT A 0 PASS DP=28;GPV=1;SPV=0.010374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:4,4:5,5 +chr2 127711424 . C CA 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr2 128079612 . T G 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,3:4,1:1,2 +chr2 128677264 . C A 0 PASS DP=67;GPV=1;SPV=0.022564;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:8,9:19,2 +chr2 128677265 . A C 0 PASS DP=72;GPV=1;SPV=0.010895;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:8,9:19,2 +chr2 129973563 . C T 0 PASS DP=57;GPV=1;SPV=0.009946;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,4:14,3 +chr2 130110807 . A T 0 PASS DP=35;GPV=1;SPV=0.021839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,6:3,4 +chr2 130124424 . A G 0 PASS DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,5:11,3 +chr2 130197270 . A G 0 PASS DP=48;GPV=1;SPV=0.037457;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,1:6,8 +chr2 130607976 . G A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:0,1:7,4 +chr2 130622941 . T G 0 PASS DP=50;GPV=1;SPV=0.011854;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,5:13,2 +chr2 130623738 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,2:18,2 +chr2 130648059 . A G 0 PASS DP=87;GPV=1;SPV=0.010368;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:27,4:18,5 +chr2 130781815 . CA C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr2 130926008 . T TTTTCTTTC 0 PASS DP=31;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:4,1:10,3 +chr2 131040025 . A C 0 PASS DP=81;GPV=1;SPV=0.042386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,4:20,1 +chr2 131264373 . G A 0 PASS DP=63;GPV=1;SPV=0.010286;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,2:15,7 +chr2 131602701 . A T 0 PASS DP=64;GPV=1;SPV=0.20119;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:21,1:21,4 +chr2 132591278 . C A 0 PASS DP=29;GPV=1;SPV=0.067079;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:1,1:8,6 +chr2 132886169 . TA T 0 PASS DP=53;GPV=1;SPV=0.00055994;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:9,14:7,8 +chr2 133444399 . G GAT 0 PASS DP=42;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,7:3,4:9,3 +chr2 133839416 . T TA 0 PASS DP=49;GPV=1;SPV=0.0044;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:5,7:12,3 +chr2 136566790 . G A 0 PASS DP=65;GPV=1;SPV=3.8037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,5:10,9 +chr2 136709397 . C A 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chr2 137404476 . C T 0 PASS DP=18;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:3,1:2,1 +chr2 137729042 . G T 0 PASS DP=58;GPV=1;SPV=0.033228;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,1:12,5 +chr2 138089369 . C A 0 PASS DP=63;GPV=1;SPV=0.00040347;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:8,9:17,5 +chr2 140112660 . G GAGAA 0 PASS DP=42;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:11,6:2,4 +chr2 140696743 . C A 0 PASS DP=83;GPV=1;SPV=8.9862e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:18,4:15,11 +chr2 142086635 . AC A 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1 +chr2 142797765 . CA C 0 PASS DP=36;GPV=1;SPV=0.024846;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:8,6:3,1 +chr2 145635002 . C CTT 0 PASS DP=22;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,3:2,1 +chr2 145687047 . A AT 0 PASS DP=62;GPV=1;SPV=0.0016822;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,5:15,6 +chr2 146937086 . AATGGATGGATGG A 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,8:5,1 +chr2 147673537 . C CT 0 PASS DP=38;GPV=1;SPV=0.032095;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:13,5:3,1 +chr2 148176304 . GT G 0 PASS DP=38;GPV=1;SPV=0.11076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:14,3:4,1 +chr2 148270393 . A ATT 0 PASS DP=49;GPV=1;SPV=0.022676;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:14,8:7,5 +chr2 149156621 . G A 0 PASS DP=50;GPV=1;SPV=0.001804;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:9,9:5,6 +chr2 149674983 . CTA C 0 PASS DP=55;GPV=1;SPV=0.055991;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,4:14,2 +chr2 149675019 . CTA C 0 PASS DP=50;GPV=1;SPV=0.0083039;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,6:5,4 +chr2 149705978 . A G 0 PASS DP=31;GPV=1;SPV=0.17217;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:4,2:5,3 +chr2 150658979 . CT C 0 PASS DP=30;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:3,6:5,3 +chr2 153246512 . C T 0 PASS DP=65;GPV=1;SPV=0.0022088;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,6:16,3 +chr2 153719837 . G T 0 PASS DP=86;GPV=1;SPV=1.6328e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:20,12:12,5 +chr2 154620975 . TCCTTTCTC T 0 PASS DP=44;GPV=1;SPV=0.10935;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:3,2:21,3 +chr2 155334085 . A G 0 PASS DP=38;GPV=1;SPV=0.042555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,5:3,3 +chr2 155334086 . AG A 0 PASS DP=36;GPV=1;SPV=0.016761;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:9,3:3,3 +chr2 155671369 . GA G 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr2 158216386 . CTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,4:6,1 +chr2 158750164 . AGT A 0 PASS DP=41;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,11:4,7:1,4 +chr2 159874069 . TAA T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,1:17,3 +chr2 159874084 . G GTA 0 PASS DP=52;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:8,5:14,5 +chr2 160191662 . A T 0 PASS DP=64;GPV=1;SPV=0.030011;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,5:16,2 +chr2 160681459 . C CTGTGTGTGTGTG 0 PASS DP=21;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,1:4,3 +chr2 161109807 . G A 0 PASS DP=71;GPV=1;SPV=0.029557;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:20,5:19,3 +chr2 162820033 . CT C 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1 +chr2 163102493 . CA C 0 PASS DP=37;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,8:4,6:4,2 +chr2 163758054 . C A 0 PASS DP=67;GPV=1;SPV=3.7651e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,8:12,4 +chr2 165147294 . GGT G 0 PASS DP=43;GPV=1;SPV=0.021659;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:10,9:6,1 +chr2 166154444 . G C 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,3:10,2 +chr2 168752279 . A ATGTGTGTG 0 PASS DP=24;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,2:2,2 +chr2 169656413 . A G 0 PASS DP=46;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,1:13,3 +chr2 169838387 . TTG T 0 PASS DP=44;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,6:2,4:2,2 +chr2 170160245 . C CTT 0 PASS DP=41;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:6,4:8,2 +chr2 170866189 . A C 0 PASS DP=68;GPV=1;SPV=0.0040937;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:19,2:9,6 +chr2 170921192 . GTT G 0 PASS DP=36;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:4,4:4,2 +chr2 171272618 . AT A 0 PASS DP=30;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,4:7,3 +chr2 172709045 . TC T 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,3:15,2 +chr2 172911758 . CTT C 0 PASS DP=28;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:7,5:3,2 +chr2 173939765 . A C 0 PASS DP=37;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:4,1:3,1 +chr2 174347609 . CTT C 0 PASS DP=32;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,3:5,2 +chr2 174409249 . G A 0 PASS DP=39;GPV=1;SPV=0.058443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2 +chr2 175000137 . AT A 0 PASS DP=48;GPV=1;SPV=0.0055138;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,6:8,4 +chr2 175777946 . C T 0 PASS DP=68;GPV=1;SPV=0.00025893;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,4:17,9 +chr2 177044292 . GACACAC G 0 PASS DP=55;GPV=1;SPV=0.0086042;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:13,7:5,6 +chr2 177414897 . C CGTGTGTGTGTGTGT 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:9,6:7,2 +chr2 177453190 . C T 0 PASS DP=47;GPV=1;SPV=9.674e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:8,8:6,9 +chr2 178016408 . C A 0 PASS DP=63;GPV=1;SPV=0.046186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,3:18,2 +chr2 179332330 . AAAAAGG A 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,1:16,3 +chr2 179395127 . A T 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,3:12,4 +chr2 179427024 . A T 0 PASS DP=66;GPV=1;SPV=4.5381e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,5:10,8 +chr2 181301902 . T A 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3 +chr2 181301903 . G T 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,1:18,3 +chr2 182169922 . G A 0 PASS DP=42;GPV=1;SPV=0.0066141;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,6:2,4:1,2 +chr2 182437546 . A T 0 PASS DP=66;GPV=1;SPV=0.0057252;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:14,5:16,4 +chr2 183278919 . T C 0 PASS DP=59;GPV=1;SPV=0.00031881;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:6,4:13,6 +chr2 184271914 . C T 0 PASS DP=78;GPV=1;SPV=1.7586e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:17,8:11,9 +chr2 185865597 . A C 0 PASS DP=73;GPV=1;SPV=0.033768;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:21,2:8,10 +chr2 185933382 . CAATA C 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,7:9,3 +chr2 186007102 . T TTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:12,4:2,3 +chr2 186213505 . TACAC T 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,2:3,4 +chr2 186961457 . CTT C 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:3,5:2,3 +chr2 187944437 . CTTT C 0 PASS DP=34;GPV=1;SPV=0.0089783;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,11:1,7:2,4 +chr2 188424486 . T C 0 PASS DP=64;GPV=1;SPV=0.0031368;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,7:15,1 +chr2 188466445 . T A 0 PASS DP=47;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:5,1:2,1 +chr2 188773787 . T A 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2 +chr2 189019131 . T A 0 PASS DP=62;GPV=1;SPV=0.00021002;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,8:12,6 +chr2 190373244 . T G 0 PASS DP=47;GPV=1;SPV=0.020223;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,4:10,7 +chr2 190953950 . A ATGTG 0 PASS DP=23;GPV=1;SPV=0.23366;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:4,2:5,2 +chr2 191723162 . G GGTGTGT 0 PASS DP=38;GPV=1;SPV=0.065471;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,7:9,6:4,1 +chr2 191743433 . AAC A 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,3:12,1 +chr2 192037614 . GAAAGAGAGAGAGGAGAGAAAGAGAGAGAA G 0 PASS DP=37;GPV=1;SPV=0.043842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr2 192532343 . G A 0 PASS DP=48;GPV=1;SPV=0.0057103;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,2:11,9 +chr2 193202938 . T A 0 PASS DP=51;GPV=1;SPV=0.00014249;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,5:7,8 +chr2 195195545 . C A 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:5,4:15,6 +chr2 195567625 . T C 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4 +chr2 196051520 . C A 0 PASS DP=69;GPV=1;SPV=0.01728;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:14,3:19,4 +chr2 196248599 . C CACAA 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3 +chr2 196362318 . TACACAC T 0 PASS DP=34;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:9,5:0,3 +chr2 198043881 . C T 0 PASS DP=20;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:1,1:3,2 +chr2 198114672 . T G 0 PASS DP=57;GPV=1;SPV=0.0035421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,1:15,7 +chr2 198668815 . T C 0 PASS DP=46;GPV=1;SPV=0.00034628;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:8,12:4,6 +chr2 199256010 . T A 0 PASS DP=65;GPV=1;SPV=1.5662e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:14,7:6,8 +chr2 199409072 . C T 0 PASS DP=78;GPV=1;SPV=0.0013049;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,4:17,7 +chr2 200027694 . C CA 0 PASS DP=35;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,7:3,1 +chr2 200657167 . T A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr2 201247190 . CAA C 0 PASS DP=24;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:1,6:3,1 +chr2 202029033 . CAA C 0 PASS DP=37;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1 +chr2 202767157 . CTT C 0 PASS DP=43;GPV=1;SPV=0.14804;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:18,4:7,1 +chr2 205920262 . G A 0 PASS DP=57;GPV=1;SPV=0.048094;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,4:7,1 +chr2 208834439 . T A 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3 +chr2 210361142 . G C 0 PASS DP=74;GPV=1;SPV=3.8667e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:14,9:9,8 +chr2 210388024 . C T 0 PASS DP=59;GPV=1;SPV=0.0039305;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,4:8,2 +chr2 213994049 . A T 0 PASS DP=49;GPV=1;SPV=0.0068919;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,6:16,2 +chr2 215538054 . TC T 0 PASS DP=40;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:10,1:10,3 +chr2 215538058 . T A 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3 +chr2 217528407 . A ATTTT 0 PASS DP=25;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:4,1:4,3 +chr2 217566745 . A G 0 PASS DP=62;GPV=1;SPV=0.0032397;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,7:11,3 +chr2 217980506 . C G 0 PASS DP=44;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,4:6,2:6,2 +chr2 218561652 . GA G 0 PASS DP=28;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,3:2,4 +chr2 222407553 . C CT 0 PASS DP=31;GPV=1;SPV=0.19804;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:13,4:5,1 +chr2 223266827 . G A 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2 +chr2 224535001 . AAAATAAATAAATAAATAAATAAAT A 0 PASS DP=52;GPV=1;SPV=0.13236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,7:5,2:18,5 +chr2 225878815 . C T 0 PASS DP=38;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,5:1,2:4,3 +chr2 226242491 . G C 0 PASS DP=62;GPV=1;SPV=0.00085757;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,8:8,4 +chr2 226706767 . C A 0 PASS DP=44;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,5:6,2:6,3 +chr2 226981435 . C CA 0 PASS DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:12,5:12,3 +chr2 227569414 . CAT C 0 PASS DP=26;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,3:2,3 +chr2 227660450 . T G 0 PASS DP=49;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:3,1:4,1 +chr2 228203825 . T A 0 PASS DP=71;GPV=1;SPV=0.00051786;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:7,4:17,5 +chr2 229308673 . CA C 0 PASS DP=21;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chr2 230645163 . G C 0 PASS DP=71;GPV=1;SPV=0.0016474;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,5:18,7 +chr2 230834879 . C CA 0 PASS DP=42;GPV=1;SPV=0.0066905;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,13:8,9:5,4 +chr2 231017939 . C T 0 PASS DP=57;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,5:6,1:9,4 +chr2 231628970 . GA G 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,6:3,1 +chr2 231837173 . C A 0 PASS DP=40;GPV=1;SPV=0.17925;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:13,2:7,1 +chr2 232180329 . A G 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2 +chr2 232673907 . C CT 0 PASS DP=31;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:4,9:3,1 +chr2 233494920 . A T 0 PASS DP=23;GPV=1;SPV=0.00024999;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:3,6:0,4 +chr2 233567321 . T G 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2 +chr2 233852579 . C T 0 PASS DP=46;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,3:8,6 +chr2 234170428 . T TTTTTTTTG 0 PASS DP=26;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:0,3:6,3 +chr2 235090896 . CTTCT C 0 PASS DP=40;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,6:5,1:11,5 +chr2 236160238 . AGTGT A 0 PASS DP=50;GPV=1;SPV=0.0055603;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,15:3,3:12,12 +chr2 236358897 . G T 0 PASS DP=61;GPV=1;SPV=0.00054254;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:11,6:13,7 +chr2 236736477 . C T 0 PASS DP=62;GPV=1;SPV=0.0032397;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:10,5:17,5 +chr2 236893471 . C T 0 PASS DP=60;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:7,2:6,1:1,1 +chr2 238780120 . C CTT 0 PASS DP=41;GPV=1;SPV=0.020642;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:8,7:10,3 +chr2 238783555 . C T 0 PASS DP=48;GPV=1;SPV=0.059999;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,5:16,1 +chr2 240479065 . C T 0 PASS DP=71;GPV=1;SPV=0.0012641;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:11,5:16,4 +chr2 240516151 . T G 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2 +chr2 240976023 . G A 0 PASS DP=82;GPV=1;SPV=5.7383e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:10,11:10,7 +chr2 242138000 . T C 0 PASS DP=33;GPV=1;SPV=0.024789;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,1:5,4 +chr20 348484 . C CGTGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.19369;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:3,2:7,3 +chr20 850094 . T TACACACACAC 0 PASS DP=37;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:10,6:3,1 +chr20 2842821 . GATAGACAT G 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,2:6,2 +chr20 3998574 . CAA C 0 PASS DP=19;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0 +chr20 4168883 . CTATTTTATTT C 0 PASS DP=57;GPV=1;SPV=0.025866;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,3:13,10 +chr20 4971299 . A AAC 0 PASS DP=45;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:10,4:5,5 +chr20 5583225 . CA C 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:3,8:3,1 +chr20 6188805 . G A 0 PASS DP=73;GPV=1;SPV=0.00060177;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,6:17,7 +chr20 6368317 . A G 0 PASS DP=79;GPV=1;SPV=0.011069;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:18,6:11,4 +chr20 7051087 . A C 0 PASS DP=44;GPV=1;SPV=0.067292;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:9,2:14,4 +chr20 8031594 . G GT 0 PASS DP=56;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:10,12:2,2:8,10 +chr20 8031779 . GATGT G 0 PASS DP=43;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,9:5,2 +chr20 10498679 . CTTTTCT C 0 PASS DP=39;GPV=1;SPV=0.097509;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:11,1:8,4 +chr20 10558363 . C A 0 PASS DP=38;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,4:5,1:5,3 +chr20 11519528 . C CATATATATAT 0 PASS DP=33;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:5,4:3,1 +chr20 11945540 . C CAA 0 PASS DP=40;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:10,4:1,0 +chr20 12188094 . C A 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:12,3:13,5 +chr20 12506579 . TACACACACACACAC T 0 PASS DP=20;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:3,3:0,2 +chr20 13347841 . C CA 0 PASS DP=46;GPV=1;SPV=0.0088148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,8:11,7:7,1 +chr20 13655841 . G T 0 PASS DP=51;GPV=1;SPV=0.00072644;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,6:7,5 +chr20 14854463 . T G 0 PASS DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:12,3:4,4 +chr20 15713995 . A G 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1 +chr20 16847421 . CT C 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3 +chr20 17164720 . A T 0 PASS DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:9,5:10,1 +chr20 19758209 . TTCCTCCTCTTCCTCC T 0 PASS DP=35;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,1:6,4 +chr20 19844713 . T C 0 PASS DP=35;GPV=1;SPV=0.038406;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:3,4:5,2 +chr20 20054014 . T G 0 PASS DP=43;GPV=1;SPV=0.00062341;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:4,9:5,5 +chr20 20098607 . C CAAA 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:5,6:4,1 +chr20 20594728 . C CT 0 PASS DP=27;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,5:5,1 +chr20 21215901 . T C 0 PASS DP=53;GPV=1;SPV=5.8478e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,4:9,7 +chr20 22082830 . A ATC 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2 +chr20 22145884 . G C 0 PASS DP=49;GPV=1;SPV=0.046659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,5:12,3 +chr20 22907106 . A AT 0 PASS DP=39;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:6,6:8,5 +chr20 23648220 . A C 0 PASS DP=33;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:2,1:3,1 +chr20 23794248 . T C 0 PASS DP=45;GPV=1;SPV=0.028266;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,1:11,5 +chr20 24543152 . G T 0 PASS DP=60;GPV=1;SPV=0.00058827;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,4:10,6 +chr20 26553908 . G A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr20 26553909 . A G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr20 26558541 . G A 0 PASS DP=72;GPV=1;SPV=0.034074;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:27,5:7,4 +chr20 26558545 . A G 0 PASS DP=72;GPV=1;SPV=0.046841;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:26,4:8,4 +chr20 26755238 . T A 0 PASS DP=45;GPV=1;SPV=0.013832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:16,8:0,1 +chr20 27161441 . G T 0 PASS DP=48;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:9,1:13,3 +chr20 27571425 . G A 0 PASS DP=24;GPV=1;SPV=0.27668;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:13,3:0,0 +chr20 28498801 . GA G 0 PASS DP=81;GPV=1;SPV=0.047062;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:26,8:12,3 +chr20 28513354 . T C 0 PASS DP=294;GPV=1;SPV=0.018002;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:133,17:89,10:44,7 +chr20 28513906 . A G 0 PASS DP=179;GPV=1;SPV=0.024244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:89,17:11,1:78,16 +chr20 28525782 . C A 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:10,3:21,1 +chr20 28530574 . A T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3 +chr20 28764397 . A T 0 PASS DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,3:12,6 +chr20 28841135 . A T 0 PASS DP=489;GPV=1;SPV=0.012388;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:274:235,39:145,24:90,15 +chr20 29048293 . G A 0 PASS DP=133;GPV=1;SPV=0.030284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:59,14:27,10:32,4 +chr20 29053060 . T G 0 PASS DP=163;GPV=1;SPV=0.01669;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:87,11:32,3:55,8 +chr20 29074228 . C T 0 PASS DP=330;GPV=1;SPV=0.011905;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:160,18:78,6:82,12 +chr20 29092153 . T A 0 PASS DP=174;GPV=1;SPV=0.0081632;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:49,7:27,9 +chr20 29484239 . C T 0 PASS DP=157;GPV=1;SPV=0.0056503;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:59,20:33,4:26,16 +chr20 29484262 . T C 0 PASS DP=140;GPV=1;SPV=0.0027154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:28,4:25,12 +chr20 29513191 . C T 0 PASS DP=269;GPV=1;SPV=0.015832;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:126,29:59,9:67,20 +chr20 29518883 . T A 0 PASS DP=139;GPV=1;SPV=0.044612;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:74,12:38,6:36,6 +chr20 29764762 . A T 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,2:13,2 +chr20 29775827 . A G 0 PASS DP=86;GPV=1;SPV=0.031184;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:17,4:22,1 +chr20 29813639 . A G 0 PASS DP=128;GPV=1;SPV=0.036467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:59,12:35,2:24,10 +chr20 29938136 . C A 0 PASS DP=91;GPV=1;SPV=0.044012;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:32,11:4,1 +chr20 29993826 . C T 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr20 30019959 . C G 0 PASS DP=19;GPV=1;SPV=0.040043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:0,1:1,4 +chr20 30177373 . T C 0 PASS DP=68;GPV=1;SPV=0.0069365;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:20,6:8,1 +chr20 30218923 . GGT G 0 PASS DP=131;GPV=1;SPV=0.038382;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:61,12:33,5:28,7 +chr20 30319291 . T C 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,1:15,3 +chr20 30756889 . T G 0 PASS DP=141;GPV=1;SPV=0.019521;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:23,3:48,10 +chr20 31055141 . T A 0 PASS DP=190;GPV=1;SPV=0.022857;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:80,18:44,10:36,8 +chr20 31064593 . T TGGAAA 0 PASS DP=330;GPV=1;SPV=0.0271;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:129,22:58,5:71,17 +chr20 31072067 . G GTGGAATGGAA 0 PASS DP=453;GPV=1;SPV=0.0097515;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:150,27:81,19:69,8 +chr20 31832757 . C T 0 PASS DP=57;GPV=1;SPV=0.003828;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,6:13,6 +chr20 32094705 . AAAAGAAAGAAAG A 0 PASS DP=39;GPV=1;SPV=0.076981;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,6:10,1 +chr20 32176929 . C G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,1:3,3 +chr20 32683247 . C A 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chr20 32964005 . C CCTTCTT 0 PASS DP=46;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:14,2:12,2 +chr20 33087753 . C CACACACACACAA 0 PASS DP=64;GPV=1;SPV=0.017877;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,12:12,6:9,6 +chr20 33128672 . T C 0 PASS DP=67;GPV=1;SPV=0.035909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,6:18,3:15,3 +chr20 33486424 . TTG T 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:18,2:15,3 +chr20 34659444 . G C 0 PASS DP=50;GPV=1;SPV=0.11202;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:17,3:11,2 +chr20 34659445 . G A 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,3:19,1 +chr20 35644636 . CTGAGAA C 0 PASS DP=59;GPV=1;SPV=0.0029127;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,7:6,5 +chr20 35722427 . A AAT 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,5:5,2 +chr20 35756444 . CAAA C 0 PASS DP=35;GPV=1;SPV=0.00096242;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,15:6,13:1,2 +chr20 37067781 . A C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,1:6,3 +chr20 37677407 . T TGAGAGAGAGAGAGA 0 PASS DP=29;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:4,2:2,4 +chr20 38122424 . TATATATATATATACACAC T 0 PASS DP=26;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,2:3,5 +chr20 38124075 . TTA T 0 PASS DP=28;GPV=1;SPV=0.0096618;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4 +chr20 39546333 . G T 0 PASS DP=70;GPV=1;SPV=0.0011917;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,7:17,3 +chr20 39944581 . C CGTGT 0 PASS DP=44;GPV=1;SPV=0.018762;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:10,5:4,3 +chr20 40435661 . C T 0 PASS DP=68;GPV=1;SPV=0.071891;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:23,3:13,2 +chr20 40799508 . G A 0 PASS DP=67;GPV=1;SPV=0.0017052;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:15,9:16,5 +chr20 42794816 . T C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,6:5,1 +chr20 43761217 . T G 0 PASS DP=48;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:7,3:17,2 +chr20 44352966 . C CA 0 PASS DP=30;GPV=1;SPV=0.10927;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,6:8,1 +chr20 44722467 . T C 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,2:6,2 +chr20 47191415 . GTGGATGGATGGATGGA G 0 PASS DP=46;GPV=1;SPV=0.0016586;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:3,7:7,3 +chr20 47510432 . C CAAAAAAAAAA 0 PASS DP=18;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1 +chr20 47890678 . G A 0 PASS DP=57;GPV=1;SPV=0.023472;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4 +chr20 48250829 . A C 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,3:5,5 +chr20 48573458 . AGTTCTCATCACCAACTGCCTCATCCTGGTTTGAAGACAG A 0 PASS DP=29;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,4:2,3 +chr20 49022432 . A C 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,3:6,3 +chr20 49254660 . G C 0 PASS DP=43;GPV=1;SPV=0.0013432;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:9,11:6,6 +chr20 49323619 . TAA T 0 PASS DP=26;GPV=1;SPV=0.0032734;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:2,6:1,1 +chr20 49401268 . T C 0 PASS DP=22;GPV=1;SPV=0.0047847;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3 +chr20 50094038 . T A 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:4,1:5,3 +chr20 50681241 . AAG A 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr20 50782593 . A T 0 PASS DP=56;GPV=1;SPV=0.022677;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,5:12,1 +chr20 51540658 . G T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr20 52733811 . A C 0 PASS DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,4:10,5 +chr20 52986401 . C CA 0 PASS DP=35;GPV=1;SPV=0.01441;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,5:7,2 +chr20 53595046 . C CA 0 PASS DP=17;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:3,3:0,0 +chr20 53670953 . A AG 0 PASS DP=34;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:4,6:4,7 +chr20 53853717 . GGAAGGAAGGAAAGAAA G 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr20 54058593 . C CTT 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr20 55688941 . A T 0 PASS DP=48;GPV=1;SPV=0.010968;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,2:12,4 +chr20 55977899 . T C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:3,4:12,2 +chr20 56735857 . G A 0 PASS DP=33;GPV=1;SPV=0.0004781;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:0,2:6,11 +chr20 56888307 . A T 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:7,2:16,8 +chr20 57031886 . TG T 0 PASS DP=30;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:1,2:12,2 +chr20 57550651 . A G 0 PASS DP=55;GPV=1;SPV=0.0016175;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:7,8:15,3 +chr20 57850478 . G A 0 PASS DP=59;GPV=1;SPV=0.0020871;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:6,7:18,3 +chr20 57931378 . A G 0 PASS DP=63;GPV=1;SPV=0.014582;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,6:18,6 +chr20 58974064 . GGAGGAGGAAGAGGAAGAA G 0 PASS DP=44;GPV=1;SPV=0.011329;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,7:6,2 +chr20 59050022 . C CTCTTTCTTTCTT 0 PASS DP=66;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,6:2,1:5,5 +chr20 60298262 . G A 0 PASS DP=64;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,8:10,4 +chr20 60356443 . CATATATATATAT C 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1 +chr20 60937919 . TAGTC T 0 PASS DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,2:6,2 +chr20 60992639 . G T 0 PASS DP=46;GPV=1;SPV=0.34103;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,4:6,2:11,2 +chr20 61242949 . G A 0 PASS DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,4:7,5 +chr20 63113757 . C CA 0 PASS DP=47;GPV=1;SPV=0.02916;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,7:17,4:5,3 +chr20 63550977 . G T 0 PASS DP=72;GPV=1;SPV=0.00012058;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:16,7:9,5 +chr20 64201999 . CCGCGTGTCGGGAACCCCT C 0 PASS DP=67;GPV=1;SPV=0.025141;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,6:13,3 +chr21 5221111 . C T 0 PASS DP=309;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:147,24:90,12:57,12 +chr21 5233816 . G T 0 PASS DP=368;GPV=1;SPV=0.037938;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:196,25:133,17:63,8 +chr21 5336009 . C T 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,2:11,2 +chr21 6439083 . C T 0 PASS DP=17;GPV=1;SPV=0.013369;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,1:1,5 +chr21 7259334 . A AGGAAT 0 PASS DP=130;GPV=1;SPV=0.010542;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:31,5:35,3 +chr21 7272733 . G A 0 PASS DP=127;GPV=1;SPV=0.026258;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:32,6:21,7 +chr21 7318241 . G C 0 PASS DP=173;GPV=1;SPV=0.016977;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:76,22:38,5:38,17 +chr21 7923952 . C T 0 PASS DP=160;GPV=1;SPV=0.002962;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:67,18:32,10:35,8 +chr21 7925632 . G A 0 PASS DP=153;GPV=1;SPV=0.018535;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:73,22:36,12:37,10 +chr21 7930930 . G A 0 PASS DP=220;GPV=1;SPV=0.046012;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:102,23:47,14:55,9 +chr21 7947527 . CCCATT C 0 PASS DP=166;GPV=1;SPV=0.021582;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:67,17:30,6:37,11 +chr21 7954799 . G A 0 PASS DP=208;GPV=1;SPV=0.024987;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:95,23:46,11:49,12 +chr21 7956049 . A C 0 PASS DP=192;GPV=1;SPV=0.041181;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:85,20:38,11:47,9 +chr21 7957932 . T A 0 PASS DP=165;GPV=1;SPV=0.011693;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:63,20:32,11:31,9 +chr21 7958822 . T A 0 PASS DP=387;GPV=1;SPV=0.048533;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:183,34:90,15:93,19 +chr21 8233759 . GTCTC G 0 PASS DP=93;GPV=1;SPV=0.010825;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:28,7:16,5:12,2 +chr21 8441992 . GGGC G 0 PASS DP=2900;GPV=1;SPV=0.042171;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1670:1429,170:517,60:912,110 +chr21 8529040 . T C 0 PASS DP=235;GPV=1;SPV=0.0075541;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:119,17:60,12:59,5 +chr21 8563236 . AC A 0 PASS DP=120;GPV=1;SPV=0.0071452;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:19,2:31,7 +chr21 8591154 . A T 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr21 8664871 . GAAATGATGAGACA G 0 PASS DP=97;GPV=1;SPV=0.038552;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:26,3:13,7 +chr21 8683354 . C T 0 PASS DP=161;GPV=1;SPV=0.0040996;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:66,19:39,11:27,8 +chr21 8700048 . G A 0 PASS DP=138;GPV=1;SPV=0.017086;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:29,10:28,6 +chr21 8770206 . T C 0 PASS DP=211;GPV=1;SPV=0.038583;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:92,21:42,13:50,8 +chr21 8783441 . G GT 0 PASS DP=237;GPV=1;SPV=0.030156;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:94,21:44,10:50,11 +chr21 8786423 . TTCC T 0 PASS DP=266;GPV=1;SPV=0.047543;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:124,22:79,15:45,7 +chr21 8798435 . C T 0 PASS DP=173;GPV=1;SPV=0.026255;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,18:50,8:27,10 +chr21 8806432 . A G 0 PASS DP=43;GPV=1;SPV=0.0024099;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,3:6,8 +chr21 8819260 . C CT 0 PASS DP=73;GPV=1;SPV=0.0059286;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:12,8:18,3 +chr21 8824094 . T TA 0 PASS DP=27;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,3:9,3 +chr21 8832187 . A C 0 PASS DP=129;GPV=1;SPV=0.0024352;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:22,8:23,9 +chr21 8850324 . C T 0 PASS DP=502;GPV=1;SPV=0.01289;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:250,28:132,16:118,12 +chr21 8853786 . C T 0 PASS DP=530;GPV=1;SPV=0.035337;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:287:257,30:129,11:128,19 +chr21 8855438 . T A 0 PASS DP=325;GPV=1;SPV=0.041858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:130,17:93,15:37,2 +chr21 8857169 . C T 0 PASS DP=287;GPV=1;SPV=0.0012623;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:150,19:77,10:73,9 +chr21 8858565 . G C 0 PASS DP=575;GPV=1;SPV=0.031343;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:329:295,34:187,16:108,18 +chr21 8864192 . G A 0 PASS DP=447;GPV=1;SPV=0.043599;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:248:219,29:95,9:124,20 +chr21 8882912 . C G 0 PASS DP=234;GPV=1;SPV=0.031042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:107,26:61,16:46,10 +chr21 8997035 . C T 0 PASS DP=267;GPV=1;SPV=0.00075409;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:119,26:47,13:72,13 +chr21 9020577 . G C 0 PASS DP=286;GPV=1;SPV=0.035284;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:135,25:61,15:74,10 +chr21 9061147 . G A 0 PASS DP=269;GPV=1;SPV=0.023936;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:123,19:54,9:69,10 +chr21 9063715 . C T 0 PASS DP=309;GPV=1;SPV=0.017066;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:144,20:68,11:76,9 +chr21 9079810 . A G 0 PASS DP=158;GPV=1;SPV=0.0018708;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:34,5:42,13 +chr21 9084776 . C T 0 PASS DP=164;GPV=1;SPV=0.036095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:70,18:33,8:37,10 +chr21 9088617 . G A 0 PASS DP=303;GPV=1;SPV=0.0283;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:179:156,23:46,8:110,15 +chr21 9093909 . T A 0 PASS DP=234;GPV=1;SPV=0.032151;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:33,8:67,12 +chr21 9095993 . C G 0 PASS DP=201;GPV=1;SPV=0.01759;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:90,14:37,11:53,3 +chr21 9100763 . G A 0 PASS DP=493;GPV=1;SPV=0.011475;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:228,36:111,13:117,23 +chr21 9107269 . G C 0 PASS DP=240;GPV=1;SPV=0.018499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:108,22:55,15:53,7 +chr21 9127820 . T C 0 PASS DP=480;GPV=1;SPV=0.039051;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:223,41:121,16:102,25 +chr21 9133399 . A G 0 PASS DP=273;GPV=1;SPV=0.032516;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:140,23:71,8:69,15 +chr21 9134566 . G T 0 PASS DP=405;GPV=1;SPV=0.02972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:234:196,38:84,15:112,23 +chr21 9134738 . T TC 0 PASS DP=351;GPV=1;SPV=0.0034009;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:157,23:90,18:67,5 +chr21 9177783 . G A 0 PASS DP=401;GPV=1;SPV=0.035694;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:173,32:83,15:90,17 +chr21 9183977 . G T 0 PASS DP=396;GPV=1;SPV=0.0064327;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:169,37:85,16:84,21 +chr21 9249156 . T A 0 PASS DP=418;GPV=1;SPV=0.0014397;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:169,27:88,16:81,11 +chr21 9250971 . G A 0 PASS DP=449;GPV=1;SPV=0.049173;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:251:222,29:111,21:111,8 +chr21 9253375 . C A 0 PASS DP=569;GPV=1;SPV=0.014473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:275,35:165,22:110,13 +chr21 9255185 . T A 0 PASS DP=539;GPV=1;SPV=0.012857;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:301:269,32:134,21:135,11 +chr21 9255403 . C T 0 PASS DP=512;GPV=1;SPV=0.046245;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:252,30:125,17:127,13 +chr21 9257802 . A T 0 PASS DP=488;GPV=1;SPV=0.047707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:260:232,28:111,9:121,19 +chr21 9257908 . G T 0 PASS DP=608;GPV=1;SPV=0.011602;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:323:280,43:133,19:147,24 +chr21 9259952 . C A 0 PASS DP=521;GPV=1;SPV=0.010574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:257:213,26:118,12:95,14 +chr21 9269934 . C G 0 PASS DP=81;GPV=1;SPV=0.032349;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:17,6:29,2 +chr21 9271680 . G T 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:29,3:1,1 +chr21 9274079 . G GA 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr21 9281724 . T C 0 PASS DP=242;GPV=1;SPV=0.014968;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:121,23:79,15:42,8 +chr21 9281917 . C A 0 PASS DP=241;GPV=1;SPV=0.022598;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:119,18:52,10:67,8 +chr21 9290140 . T C 0 PASS DP=350;GPV=1;SPV=0.037032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:159,18:74,7:85,11 +chr21 9296068 . T A 0 PASS DP=278;GPV=1;SPV=0.02408;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:138,25:52,6:86,19 +chr21 9296372 . A AG 0 PASS DP=353;GPV=1;SPV=0.013408;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:182,25:96,17:86,8 +chr21 9298276 . G A 0 PASS DP=340;GPV=1;SPV=0.036769;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:151,30:55,13:96,17 +chr21 9302284 . TG T 0 PASS DP=423;GPV=1;SPV=0.036025;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:199,24:95,11:104,13 +chr21 9302286 . T TAA 0 PASS DP=419;GPV=1;SPV=0.043678;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:182,24:86,9:96,15 +chr21 9302543 . G A 0 PASS DP=307;GPV=1;SPV=0.047274;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:160,24:82,7:78,17 +chr21 9305569 . A T 0 PASS DP=312;GPV=1;SPV=0.004428;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:155,25:73,11:82,14 +chr21 9307181 . T G 0 PASS DP=374;GPV=1;SPV=0.033666;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:190,25:82,11:108,14 +chr21 9309745 . C T 0 PASS DP=334;GPV=1;SPV=0.0012439;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:174,30:92,20:82,10 +chr21 9312447 . C T 0 PASS DP=423;GPV=1;SPV=0.047154;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:207,29:109,17:98,12 +chr21 9314168 . C G 0 PASS DP=483;GPV=1;SPV=8.5725e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:273:215,58:104,32:111,26 +chr21 9317020 . G C 0 PASS DP=263;GPV=1;SPV=0.01741;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:111,19:64,14:47,5 +chr21 9320170 . G A 0 PASS DP=407;GPV=1;SPV=0.0012808;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:180,47:65,33:115,14 +chr21 9321156 . G C 0 PASS DP=358;GPV=1;SPV=0.0034652;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:175,24:77,13:98,11 +chr21 9324923 . C T 0 PASS DP=345;GPV=1;SPV=0.033353;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:171,29:98,14:73,15 +chr21 9325560 . C T 0 PASS DP=516;GPV=1;SPV=0.022753;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:296:266,30:148,16:118,14 +chr21 9327769 . G A 0 PASS DP=361;GPV=1;SPV=0.0017408;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:168,26:90,16:78,10 +chr21 9327799 . G A 0 PASS DP=405;GPV=1;SPV=8.6454e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:220:189,31:92,20:97,11 +chr21 9329414 . G C 0 PASS DP=377;GPV=1;SPV=0.019855;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:171,27:76,14:95,13 +chr21 9331000 . C T 0 PASS DP=284;GPV=1;SPV=0.0013678;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:125,31:63,18:62,13 +chr21 9331071 . C T 0 PASS DP=305;GPV=1;SPV=9.4138e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:134,36:68,21:66,15 +chr21 9331208 . T C 0 PASS DP=326;GPV=1;SPV=0.0090971;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:162,37:82,17:80,20 +chr21 9333403 . A T 0 PASS DP=329;GPV=1;SPV=0.0066175;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:158,32:76,18:82,14 +chr21 9333753 . G A 0 PASS DP=265;GPV=1;SPV=0.0015494;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:120,34:50,17:70,17 +chr21 9335609 . T G 0 PASS DP=259;GPV=1;SPV=0.035129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:121,23:70,9:51,14 +chr21 9337270 . A T 0 PASS DP=282;GPV=1;SPV=0.0053293;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:120,29:54,14:66,15 +chr21 9338092 . T C 0 PASS DP=290;GPV=1;SPV=0.00086025;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:127,32:53,15:74,17 +chr21 9340700 . G C 0 PASS DP=297;GPV=1;SPV=0.0068861;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:138,28:66,15:72,13 +chr21 9342509 . G A 0 PASS DP=342;GPV=1;SPV=0.021826;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:61,11:99,14 +chr21 9346496 . A T 0 PASS DP=353;GPV=1;SPV=0.036759;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:160,25:82,14:78,11 +chr21 9346571 . T C 0 PASS DP=392;GPV=1;SPV=0.02125;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:193:173,20:89,5:84,15 +chr21 9349138 . G GC 0 PASS DP=307;GPV=1;SPV=0.049995;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:149,20:79,10:70,10 +chr21 9350854 . C T 0 PASS DP=387;GPV=1;SPV=0.0078513;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:190,31:95,17:95,14 +chr21 9353047 . G T 0 PASS DP=341;GPV=1;SPV=0.0063786;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:148,34:85,19:63,15 +chr21 9354467 . C T 0 PASS DP=332;GPV=1;SPV=0.0098387;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:162,26:49,11:113,15 +chr21 9354918 . T G 0 PASS DP=353;GPV=1;SPV=0.046627;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:166,26:90,11:76,15 +chr21 9356868 . C T 0 PASS DP=464;GPV=1;SPV=0.021887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:265:237,28:132,13:105,15 +chr21 9358898 . T C 0 PASS DP=352;GPV=1;SPV=0.020415;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:144,29:69,16:75,13 +chr21 9363273 . C T 0 PASS DP=321;GPV=1;SPV=0.012606;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:168,24:97,16:71,8 +chr21 9363641 . C T 0 PASS DP=241;GPV=1;SPV=0.045542;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:41,10:59,11 +chr21 9367042 . A G 0 PASS DP=642;GPV=1;SPV=0.0028539;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:356:318,38:167,21:151,17 +chr21 9368429 . C T 0 PASS DP=683;GPV=1;SPV=0.046887;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:380:340,40:158,21:182,19 +chr21 9369655 . G A 0 PASS DP=525;GPV=1;SPV=0.036189;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:240,35:130,21:110,14 +chr21 9370242 . G A 0 PASS DP=444;GPV=1;SPV=0.0022937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:194,33:85,16:109,17 +chr21 9373504 . G GAGAT 0 PASS DP=347;GPV=1;SPV=0.019397;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:162,32:72,14:90,18 +chr21 9568769 . C A 0 PASS DP=153;GPV=1;SPV=0.0005032;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:60,29:34,16:26,13 +chr21 9569908 . C T 0 PASS DP=200;GPV=1;SPV=0.036987;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:46,9:36,10 +chr21 9573354 . C T 0 PASS DP=140;GPV=1;SPV=0.018604;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:56,17:29,10:27,7 +chr21 9575796 . C T 0 PASS DP=234;GPV=1;SPV=0.039889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:57,10:58,11 +chr21 9579060 . A G 0 PASS DP=161;GPV=1;SPV=0.02489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:48,14:32,6:16,8 +chr21 9585984 . C G 0 PASS DP=249;GPV=1;SPV=0.0098747;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:98,24:49,12:49,12 +chr21 9593820 . C T 0 PASS DP=165;GPV=1;SPV=0.016174;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:24,8:52,8 +chr21 9595670 . C T 0 PASS DP=161;GPV=1;SPV=0.025548;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:62,14:36,6:26,8 +chr21 9604294 . C T 0 PASS DP=144;GPV=1;SPV=0.036297;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:61,14:28,6:33,8 +chr21 9611369 . C CT 0 PASS DP=85;GPV=1;SPV=0.03177;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,12:24,8:15,4 +chr21 9622929 . C T 0 PASS DP=135;GPV=1;SPV=0.026582;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:38,6:20,10 +chr21 9644497 . G T 0 PASS DP=146;GPV=1;SPV=0.019348;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:57,18:40,8:17,10 +chr21 9653120 . A G 0 PASS DP=141;GPV=1;SPV=0.0013323;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:54,25:27,13:27,12 +chr21 9691585 . C T 0 PASS DP=160;GPV=1;SPV=0.014408;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:74,24:35,13:39,11 +chr21 9700317 . G T 0 PASS DP=120;GPV=1;SPV=0.035691;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:29,4:18,9 +chr21 9717066 . A G 0 PASS DP=165;GPV=1;SPV=0.03647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:79,12:45,7:34,5 +chr21 9722947 . A G 0 PASS DP=162;GPV=1;SPV=0.022057;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:71,16:33,10:38,6 +chr21 9765078 . GTATATATATA G 0 PASS DP=72;GPV=1;SPV=0.0027332;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:14,10:10,8:4,2 +chr21 9806006 . G A 0 PASS DP=155;GPV=1;SPV=0.0014147;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:69,24:29,11:40,13 +chr21 9820500 . C G 0 PASS DP=414;GPV=1;SPV=0.0030957;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:186,28:100,18:86,10 +chr21 9820892 . C G 0 PASS DP=427;GPV=1;SPV=0.047126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:181,33:92,18:89,15 +chr21 9821495 . G C 0 PASS DP=541;GPV=1;SPV=0.035867;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:316:269,47:113,25:156,22 +chr21 9824116 . C T 0 PASS DP=420;GPV=1;SPV=0.013515;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:210,37:131,25:79,12 +chr21 9827822 . G A 0 PASS DP=75;GPV=1;SPV=0.047138;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,6:11,2 +chr21 9874259 . A T 0 PASS DP=164;GPV=1;SPV=0.032088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:76,14:39,3:37,11 +chr21 9885332 . CT C 0 PASS DP=156;GPV=1;SPV=0.013025;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:68,21:36,15:32,6 +chr21 9907282 . AT A 0 PASS DP=154;GPV=1;SPV=0.018567;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:35,3:35,5 +chr21 9922536 . A T 0 PASS DP=136;GPV=1;SPV=0.00058342;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:25,7:32,3 +chr21 9983152 . A G 0 PASS DP=150;GPV=1;SPV=0.022997;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:26,8:27,8 +chr21 10002648 . C G 0 PASS DP=117;GPV=1;SPV=0.015345;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:47,17:20,11:27,6 +chr21 10334729 . C T 0 PASS DP=320;GPV=1;SPV=0.035482;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:167,28:88,20:79,8 +chr21 10360392 . G A 0 PASS DP=443;GPV=1;SPV=0.03335;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:238:204,34:109,15:95,19 +chr21 10369115 . C T 0 PASS DP=161;GPV=1;SPV=0.032698;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:66,17:22,3:44,14 +chr21 10393398 . A C 0 PASS DP=239;GPV=1;SPV=0.049025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:116,17:75,11:41,6 +chr21 10401605 . T C 0 PASS DP=251;GPV=1;SPV=0.016593;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:114,18:73,15:41,3 +chr21 10421129 . C T 0 PASS DP=199;GPV=1;SPV=0.0065045;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,21:39,9:48,12 +chr21 10427641 . A G 0 PASS DP=380;GPV=1;SPV=0.0011008;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:176,37:88,18:88,19 +chr21 10434766 . G A 0 PASS DP=158;GPV=1;SPV=0.043736;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:32,6:38,4 +chr21 10442800 . G T 0 PASS DP=230;GPV=1;SPV=0.0040681;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:106,27:58,13:48,14 +chr21 10443821 . C A 0 PASS DP=163;GPV=1;SPV=0.020561;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:89,11:44,6:45,5 +chr21 10446922 . G T 0 PASS DP=310;GPV=1;SPV=0.031393;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:162,18:96,12:66,6 +chr21 10468490 . T TGTGTGC 0 PASS DP=306;GPV=1;SPV=0.0029326;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:136,38:73,14:63,24 +chr21 10480037 . C G 0 PASS DP=351;GPV=1;SPV=0.03139;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:160,26:83,16:77,10 +chr21 10581802 . G A 0 PASS DP=160;GPV=1;SPV=0.023901;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:81,19:36,8:45,11 +chr21 10656340 . A C 0 PASS DP=126;GPV=1;SPV=0.0083471;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:32,5:14,6 +chr21 10685060 . C G 0 PASS DP=151;GPV=1;SPV=0.006956;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:70,25:30,12:40,13 +chr21 10805196 . CA C 0 PASS DP=239;GPV=1;SPV=0.010772;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:105,28:60,18:45,10 +chr21 12979753 . G T 0 PASS DP=161;GPV=1;SPV=0.035953;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:38,6:33,11 +chr21 13069293 . G T 0 PASS DP=67;GPV=1;SPV=0.076851;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,3:18,1 +chr21 13485129 . T C 0 PASS DP=82;GPV=1;SPV=0.012989;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,11:17,3 +chr21 13885151 . A C 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,1:2,6 +chr21 13942417 . A G 0 PASS DP=50;GPV=1;SPV=0.00094846;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,9:7,6 +chr21 14017766 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,3:13,1 +chr21 16256630 . T G 0 PASS DP=57;GPV=1;SPV=0.00045891;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6 +chr21 16284658 . T TTG 0 PASS DP=45;GPV=1;SPV=0.049827;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,6:9,3 +chr21 17365348 . G A 0 PASS DP=61;GPV=1;SPV=0.0013438;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,5:9,1 +chr21 17703814 . A G 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,8:9,2 +chr21 18369973 . C CAAAA 0 PASS DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,7:1,6:2,1 +chr21 18387612 . TACACACACACAC T 0 PASS DP=39;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,12:4,5:2,7 +chr21 18705237 . A C 0 PASS DP=59;GPV=1;SPV=3.7005e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,8:9,8 +chr21 19154405 . A G 0 PASS DP=46;GPV=1;SPV=0.0062692;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,3:10,6 +chr21 19345908 . A ATGTC 0 PASS DP=62;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,6:16,1:5,5 +chr21 19729409 . A AT 0 PASS DP=27;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:4,5:1,1 +chr21 20488919 . A T 0 PASS DP=62;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:1,3:0,1:1,2 +chr21 20969566 . T TTACAATGAAAAATTCAG 0 PASS DP=51;GPV=1;SPV=0.025865;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4 +chr21 21343352 . T TACACACACAC 0 PASS DP=31;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,4:6,5 +chr21 21742582 . A AT 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:1,4:4,3 +chr21 24243452 . T A 0 PASS DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3 +chr21 25220910 . AT A 0 PASS DP=54;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,5:10,6 +chr21 27131296 . C A 0 PASS DP=71;GPV=1;SPV=0.0016717;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:12,7:19,4 +chr21 27298943 . TA T 0 PASS DP=56;GPV=1;SPV=0.038795;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:7,5:13,3 +chr21 27448654 . T A 0 PASS DP=61;GPV=1;SPV=0.001437;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7 +chr21 27502369 . A G 0 PASS DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,6:9,3 +chr21 27531878 . C CT 0 PASS DP=28;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:4,5:2,1 +chr21 27904417 . A AAAG 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,1:10,3 +chr21 27951396 . A AT 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:14,8:5,2 +chr21 28179992 . C CTA 0 PASS DP=63;GPV=1;SPV=0.15237;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,6:18,5:22,1 +chr21 28864900 . T TAG 0 PASS DP=45;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:7,6:10,1 +chr21 29296049 . CAA C 0 PASS DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:10,11:1,1 +chr21 29519883 . T A 0 PASS DP=30;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,5:3,3:1,2 +chr21 29860020 . T C 0 PASS DP=65;GPV=1;SPV=0.0085539;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:17,8:14,1 +chr21 29905619 . ATTTT A 0 PASS DP=29;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,4:3,3 +chr21 30153223 . A G 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,1:15,5 +chr21 30558081 . CT C 0 PASS DP=25;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,9:0,5:4,4 +chr21 30826651 . T TA 0 PASS DP=35;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:5,4:2,2 +chr21 30866484 . G GTA 0 PASS DP=31;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,8:2,4:0,4 +chr21 31584399 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,1:4,3 +chr21 32652938 . G T 0 PASS DP=75;GPV=1;SPV=6.9826e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:12,12:14,8 +chr21 32892695 . CTT C 0 PASS DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:0,0:9,4 +chr21 35554234 . C CT 0 PASS DP=20;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:2,4:2,3 +chr21 35851420 . T A 0 PASS DP=48;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,3:1,1:3,2 +chr21 35865916 . G C 0 PASS DP=66;GPV=1;SPV=0.019153;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,4:13,5 +chr21 36644650 . ATATATG A 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr21 38329455 . T C 0 PASS DP=68;GPV=1;SPV=0.015866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:14,5:18,2 +chr21 38799741 . G C 0 PASS DP=77;GPV=1;SPV=0.022806;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:26,5:17,4 +chr21 38905139 . T TAGATAGATAGATAGATAGATAGACAGAC 0 PASS DP=44;GPV=1;SPV=0.18048;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,5:12,3:12,2 +chr21 38915434 . C T 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1 +chr21 39917573 . A G 0 PASS DP=68;GPV=1;SPV=4.1799e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,24:8,14:8,10 +chr21 39974524 . C T 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,4:9,2 +chr21 40151130 . G A 0 PASS DP=75;GPV=1;SPV=0.019542;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:23,5:20,6 +chr21 40266635 . T TTATATATATATA 0 PASS DP=26;GPV=1;SPV=0.29464;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1 +chr21 40453040 . T TTGTGTG 0 PASS DP=36;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:7,2:5,3 +chr21 40765100 . A G 0 PASS DP=82;GPV=1;SPV=0.038274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:15,4:9,2:6,2 +chr21 40856357 . T A 0 PASS DP=85;GPV=1;SPV=0.009884;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:20,8:5,3:15,5 +chr21 41041897 . AAG A 0 PASS DP=48;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,4:8,3:11,1 +chr21 41179498 . C G 0 PASS DP=28;GPV=1;SPV=0.036089;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1 +chr21 41518516 . AC A 0 PASS DP=59;GPV=1;SPV=0.022054;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,7:11,1 +chr21 41604381 . CTTTCTTTCTCTTTCTTTCTTTCT C 0 PASS DP=63;GPV=1;SPV=0.011513;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:4,3:28,7 +chr21 42401381 . A T 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:14,2:6,4 +chr21 43736629 . GTT G 0 PASS DP=40;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,13:4,11:4,2 +chr21 43965613 . G T 0 PASS DP=76;GPV=1;SPV=0.045689;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:29,1:14,6 +chr21 44676286 . C T 0 PASS DP=81;GPV=1;SPV=0.0034821;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:20,7:18,3 +chr21 44925418 . GGGAGGGAAGGAA G 0 PASS DP=44;GPV=1;SPV=0.013474;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:12,6:4,4 +chr21 45511088 . C T 0 PASS DP=32;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:7,1:7,3 +chr21 45987789 . CG C 0 PASS DP=33;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:2,7:6,6 +chr21 46134707 . C CAGGGTGAGGGTG 0 PASS DP=34;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,11:6,7:2,4 +chr21 46135340 . CAATGTCCCCTCA C 0 PASS DP=39;GPV=1;SPV=0.019042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,3:10,11 +chr21 46201032 . T C 0 PASS DP=50;GPV=1;SPV=0.19313;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:4,2:25,2 +chr21 46503681 . CTTTT C 0 PASS DP=36;GPV=1;SPV=0.041461;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:4,4:13,3 +chr21 46506724 . T TTTC 0 PASS DP=53;GPV=1;SPV=0.1356;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:5,2:27,4 +chr21 46523393 . AT A 0 PASS DP=53;GPV=1;SPV=0.018157;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,13:10,8:6,5 +chr22 10519159 . A G 0 PASS DP=77;GPV=1;SPV=0.016106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:31,10:0,1 +chr22 10540138 . T C 0 PASS DP=65;GPV=1;SPV=0.053114;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:21,3:7,1 +chr22 10692797 . C A 0 PASS DP=249;GPV=1;SPV=0.0086306;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:108,25:61,8:47,17 +chr22 10711502 . G A 0 PASS DP=202;GPV=1;SPV=0.012888;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:42,10:42,9 +chr22 10718972 . C A 0 PASS DP=97;GPV=1;SPV=0.012144;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:19,3:23,6 +chr22 10719050 . C CTCCAT 0 PASS DP=64;GPV=1;SPV=0.041973;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,7:13,2:18,5 +chr22 10730754 . CTTG C 0 PASS DP=214;GPV=1;SPV=0.030973;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:100,23:57,10:43,13 +chr22 10737681 . T A 0 PASS DP=330;GPV=1;SPV=0.047801;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:154,21:71,7:83,14 +chr22 10747004 . G T 0 PASS DP=343;GPV=1;SPV=0.016617;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:149,28:95,11:54,17 +chr22 11038491 . T C 0 PASS DP=287;GPV=1;SPV=0.015677;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:139,20:75,11:64,9 +chr22 11039319 . ATT A 0 PASS DP=222;GPV=1;SPV=0.018223;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:93,17:43,11:50,6 +chr22 11043051 . C T 0 PASS DP=111;GPV=1;SPV=0.021519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:27,7:21,3 +chr22 11048550 . T A 0 PASS DP=222;GPV=1;SPV=0.001035;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:114,16:52,4:62,12 +chr22 11048836 . T C 0 PASS DP=172;GPV=1;SPV=0.0070553;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:77,12:30,3:47,9 +chr22 11050709 . G A 0 PASS DP=225;GPV=1;SPV=0.00091932;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:112,23:68,9:44,14 +chr22 11056810 . A G 0 PASS DP=292;GPV=1;SPV=4.9242e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:138,30:78,14:60,16 +chr22 11058156 . A T 0 PASS DP=111;GPV=1;SPV=0.0096308;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:21,5:34,7 +chr22 11284131 . A C 0 PASS DP=42;GPV=1;SPV=0.034481;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3 +chr22 11284214 . C T 0 PASS DP=69;GPV=1;SPV=5.846e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:11,4:7,13 +chr22 11315794 . G A 0 PASS DP=265;GPV=1;SPV=0.017106;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:119,26:67,13:52,13 +chr22 11617036 . C A 0 PASS DP=77;GPV=1;SPV=0.000638;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:15,6:20,9 +chr22 11617229 . T C 0 PASS DP=96;GPV=1;SPV=0.043506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:24,3:17,11 +chr22 11691473 . A G 0 PASS DP=83;GPV=1;SPV=0.026654;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:19,2:14,7 +chr22 11789412 . A C 0 PASS DP=236;GPV=1;SPV=0.02995;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:109,17:50,8:59,9 +chr22 11831534 . T C 0 PASS DP=130;GPV=1;SPV=0.038796;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:13,2:46,7 +chr22 11834556 . T C 0 PASS DP=345;GPV=1;SPV=0.029507;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:159,25:63,3:96,22 +chr22 11850005 . G A 0 PASS DP=69;GPV=1;SPV=0.0068281;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,6:11,5 +chr22 11855791 . A G 0 PASS DP=440;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:252:213,39:85,4:128,35 +chr22 11859488 . C T 0 PASS DP=191;GPV=1;SPV=0.030041;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:86,13:36,2:50,11 +chr22 11865928 . G A 0 PASS DP=232;GPV=1;SPV=0.0098825;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:113,15:71,12:42,3 +chr22 11866660 . T C 0 PASS DP=377;GPV=1;SPV=0.015796;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:159,33:89,12:70,21 +chr22 11869587 . T C 0 PASS DP=309;GPV=1;SPV=0.029408;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:147,17:65,10:82,7 +chr22 11869839 . G A 0 PASS DP=182;GPV=1;SPV=0.047269;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:23,4:69,11 +chr22 11890253 . A G 0 PASS DP=52;GPV=1;SPV=0.032708;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1 +chr22 11890558 . T A 0 PASS DP=151;GPV=1;SPV=0.046989;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:67,12:45,10:22,2 +chr22 11890603 . A T 0 PASS DP=104;GPV=1;SPV=0.0044489;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:27,5:20,7 +chr22 11892130 . C T 0 PASS DP=296;GPV=1;SPV=0.016442;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:143,27:87,14:56,13 +chr22 11900144 . T C 0 PASS DP=299;GPV=1;SPV=0.028786;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:137,26:95,10:42,16 +chr22 11902251 . C A 0 PASS DP=677;GPV=1;SPV=0.022691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:378:333,45:181,21:152,24 +chr22 11902252 . A T 0 PASS DP=667;GPV=1;SPV=0.015515;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:375:328,47:166,21:162,26 +chr22 11911908 . G T 0 PASS DP=46;GPV=1;SPV=0.066379;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,8:8,6:10,2 +chr22 11928081 . A G 0 PASS DP=655;GPV=1;SPV=0.048726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:375:336,39:183,20:153,19 +chr22 11936070 . A T 0 PASS DP=418;GPV=1;SPV=0.00059618;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:167,42:88,25:79,17 +chr22 11942334 . C G 0 PASS DP=347;GPV=1;SPV=0.021383;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:165,33:44,21:121,12 +chr22 11947623 . C A 0 PASS DP=158;GPV=1;SPV=0.0050579;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:45,3:40,7 +chr22 11950047 . A G 0 PASS DP=160;GPV=1;SPV=0.044156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:80,10:40,6:40,4 +chr22 11950699 . TATAC T 0 PASS DP=108;GPV=1;SPV=0.012602;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:10,2:28,10 +chr22 11958784 . C A 0 PASS DP=154;GPV=1;SPV=0.0042434;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:36,10:28,7 +chr22 12043389 . CT C 0 PASS DP=170;GPV=1;SPV=0.013846;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,13:42,6:35,7 +chr22 12047416 . A G 0 PASS DP=130;GPV=1;SPV=0.038584;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:21,4:31,11 +chr22 12071725 . T A 0 PASS DP=209;GPV=1;SPV=0.018587;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:110,13:59,10:51,3 +chr22 12073053 . A G 0 PASS DP=172;GPV=1;SPV=0.04415;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:82,19:39,9:43,10 +chr22 12078216 . T A 0 PASS DP=178;GPV=1;SPV=0.044888;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:40,8:45,11 +chr22 12088780 . CTT C 0 PASS DP=163;GPV=1;SPV=0.0010345;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:25,12:36,5 +chr22 12088800 . A T 0 PASS DP=171;GPV=1;SPV=0.0065432;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:73,16:27,10:46,6 +chr22 12093764 . T C 0 PASS DP=224;GPV=1;SPV=0.0048439;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:92,23:51,11:41,12 +chr22 12096985 . ATTTG A 0 PASS DP=162;GPV=1;SPV=0.0042836;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:47,7:29,11 +chr22 12138075 . A G 0 PASS DP=426;GPV=1;SPV=0.007091;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:231:206,25:101,16:105,9 +chr22 12156723 . A C 0 PASS DP=127;GPV=1;SPV=0.041292;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:58,9:13,2:45,7 +chr22 12200447 . C T 0 PASS DP=337;GPV=1;SPV=0.041512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:156,24:63,8:93,16 +chr22 12208541 . C T 0 PASS DP=179;GPV=1;SPV=0.029756;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:70,17:27,7:43,10 +chr22 12213734 . G A 0 PASS DP=231;GPV=1;SPV=0.0092587;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:128,21:52,9:76,12 +chr22 12277008 . G A 0 PASS DP=36;GPV=1;SPV=0.00093163;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,3:3,6 +chr22 12284638 . A G 0 PASS DP=230;GPV=1;SPV=0.020841;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:108,19:68,13:40,6 +chr22 12305907 . A G 0 PASS DP=205;GPV=1;SPV=0.047813;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:78,18:22,3 +chr22 12349893 . T G 0 PASS DP=223;GPV=1;SPV=0.044175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:118,16:63,5:55,11 +chr22 12504173 . G A 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr22 12592601 . G A 0 PASS DP=183;GPV=1;SPV=0.0059851;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:92,19:40,4:52,15 +chr22 12617705 . C A 0 PASS DP=150;GPV=1;SPV=0.034319;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:32,8:37,6 +chr22 12697095 . G C 0 PASS DP=205;GPV=1;SPV=0.014095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:79,18:40,10:39,8 +chr22 12700082 . A T 0 PASS DP=183;GPV=1;SPV=0.025064;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:91,20:55,11:36,9 +chr22 12721756 . T C 0 PASS DP=220;GPV=1;SPV=0.0062308;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:94,27:37,17:57,10 +chr22 12723439 . C T 0 PASS DP=95;GPV=1;SPV=0.044668;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:14,5:28,4 +chr22 12789806 . C CAA 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,6:4,1 +chr22 12807011 . G C 0 PASS DP=141;GPV=1;SPV=0.022184;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:74,14:40,5:34,9 +chr22 12810751 . G A 0 PASS DP=92;GPV=1;SPV=0.0027702;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:31,4:14,7 +chr22 12810923 . G GTAAC 0 PASS DP=70;GPV=1;SPV=0.15236;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,5:29,2:14,3 +chr22 12817696 . C A 0 PASS DP=113;GPV=1;SPV=0.040334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:22,5:30,2 +chr22 12869391 . T C 0 PASS DP=402;GPV=1;SPV=0.0010087;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:193,26:72,9:121,17 +chr22 12877926 . A T 0 PASS DP=281;GPV=1;SPV=0.037111;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:136,24:77,12:59,12 +chr22 12883528 . C T 0 PASS DP=68;GPV=1;SPV=0.012287;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:22,4:6,2 +chr22 12895438 . G C 0 PASS DP=279;GPV=1;SPV=0.017536;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:134,27:85,13:49,14 +chr22 12897751 . C A 0 PASS DP=285;GPV=1;SPV=0.00022687;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:127,32:82,21:45,11 +chr22 12901664 . C A 0 PASS DP=223;GPV=1;SPV=0.011487;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:106,22:47,11:59,11 +chr22 12903574 . T C 0 PASS DP=74;GPV=1;SPV=0.0063397;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:33,4:0,4 +chr22 12903902 . C A 0 PASS DP=328;GPV=1;SPV=0.0083562;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:161,36:75,24:86,12 +chr22 15412353 . G A 0 PASS DP=89;GPV=1;SPV=0.03885;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:22,9:22,4 +chr22 15548844 . C T 0 PASS DP=95;GPV=1;SPV=0.028064;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:34,8:12,1 +chr22 15659861 . T TA 0 PASS DP=58;GPV=1;SPV=0.036709;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:0,2:22,7 +chr22 15680325 . T C 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:1,1:9,6 +chr22 15708540 . A G 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,2:4,3 +chr22 15731112 . G C 0 PASS DP=127;GPV=1;SPV=0.038977;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:61,13:40,11:21,2 +chr22 15794011 . TA T 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr22 15797061 . C T 0 PASS DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2 +chr22 15837366 . T C 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,4:13,1 +chr22 15855606 . A G 0 PASS DP=37;GPV=1;SPV=0.19154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,2:14,2 +chr22 16421475 . T G 0 PASS DP=93;GPV=1;SPV=0.010599;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:16,9:23,7 +chr22 16477420 . TAA T 0 PASS DP=98;GPV=1;SPV=0.0076984;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:34,16:10,12:24,4 +chr22 16883577 . G C 0 PASS DP=69;GPV=1;SPV=0.066681;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:17,4:19,1 +chr22 17886804 . CAA C 0 PASS DP=34;GPV=1;SPV=0.0040786;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:6,7:1,1 +chr22 18084239 . T C 0 PASS DP=32;GPV=1;SPV=0.045694;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:8,5:5,1 +chr22 18197351 . G C 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr22 18204790 . T TATATA 0 PASS DP=60;GPV=1;SPV=0.019827;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,6:9,3 +chr22 18204837 . CATATATT C 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1 +chr22 18394806 . G T 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr22 18508963 . CTTT C 0 PASS DP=82;GPV=1;SPV=0.040005;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,10:22,9:10,1 +chr22 18817078 . G A 0 PASS DP=74;GPV=1;SPV=0.1063;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:20,3:23,2 +chr22 18850435 . C T 0 PASS DP=171;GPV=1;SPV=0.0015486;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:71,22:38,18:33,4 +chr22 18864613 . C T 0 PASS DP=61;GPV=1;SPV=0.063369;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,2:13,3 +chr22 18945973 . T G 0 PASS DP=91;GPV=1;SPV=0.020498;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:19,2:16,12 +chr22 19761611 . G C 0 PASS DP=84;GPV=1;SPV=0.0020111;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:17,6:22,5 +chr22 20336043 . TA T 0 PASS DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:13,2:19,3 +chr22 20695805 . A G 0 PASS DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,4:25,2 +chr22 21085828 . C T 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,5:6,5 +chr22 21178758 . C G 0 PASS DP=113;GPV=1;SPV=0.019424;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:19,5:27,9 +chr22 21184688 . G T 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2 +chr22 21218520 . G T 0 PASS DP=123;GPV=1;SPV=0.010965;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:36,6:23,1 +chr22 21223209 . C CT 0 PASS DP=48;GPV=1;SPV=0.045809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:4,5:12,5 +chr22 21224952 . G A 0 PASS DP=164;GPV=1;SPV=0.015733;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:37,9:36,6 +chr22 21256883 . C T 0 PASS DP=141;GPV=1;SPV=0.022731;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:31,6:25,10 +chr22 21306870 . G T 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 22393137 . GA G 0 PASS DP=54;GPV=1;SPV=0.17909;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,5:9,2:10,3 +chr22 22485355 . C T 0 PASS DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:11,5:12,6 +chr22 22501019 . CA C 0 PASS DP=36;GPV=1;SPV=0.011299;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,8:5,1 +chr22 23953122 . A G 0 PASS DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3 +chr22 24251077 . A C 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:10,4:20,1 +chr22 24611773 . TTG T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,8:3,1 +chr22 24647131 . G C 0 PASS DP=87;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:14,6:25,10 +chr22 24649431 . G T 0 PASS DP=79;GPV=1;SPV=0.047266;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,12:15,5:17,7 +chr22 25499786 . TCC T 0 PASS DP=18;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,1:0,2 +chr22 25867619 . A ATTTCTTTC 0 PASS DP=43;GPV=1;SPV=0.013499;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:4,5:12,7 +chr22 25913947 . G T 0 PASS DP=75;GPV=1;SPV=0.0021771;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:12,8:19,1 +chr22 26116686 . A T 0 PASS DP=70;GPV=1;SPV=0.064244;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:13,2:19,2 +chr22 26316871 . GGAAA G 0 PASS DP=49;GPV=1;SPV=0.012566;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:14,4:4,6 +chr22 26371066 . A C 0 PASS DP=59;GPV=1;SPV=0.00070453;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:3,3:15,5 +chr22 26661959 . TATAC T 0 PASS DP=29;GPV=1;SPV=0.31818;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:4,1:1,1 +chr22 26720774 . G GAA 0 PASS DP=34;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:6,6:4,1 +chr22 27053565 . CTCTATATATA C 0 PASS DP=19;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:2,1:1,1 +chr22 28243174 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:4,5:3,4 +chr22 29412875 . C T 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,20:7,10:8,10 +chr22 29704228 . C T 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr22 33559379 . G A 0 PASS DP=70;GPV=1;SPV=0.0081203;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1 +chr22 33597278 . GAA G 0 PASS DP=41;GPV=1;SPV=0.0019281;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,9:4,2 +chr22 34151456 . C CAAA 0 PASS DP=30;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:8,6:1,1 +chr22 34300459 . C CTTTG 0 PASS DP=48;GPV=1;SPV=0.029051;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:5,1:4,5 +chr22 35013180 . T TA 0 PASS DP=24;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,1:3,4 +chr22 35117748 . C T 0 PASS DP=46;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:7,1:15,2 +chr22 35709064 . G C 0 PASS DP=67;GPV=1;SPV=0.0012095;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:15,4:8,4 +chr22 36214791 . CTG C 0 PASS DP=35;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,7:4,6:3,1 +chr22 36227315 . CAAAAA C 0 PASS DP=46;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,13:6,11:4,2 +chr22 37079017 . G GAA 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:20,1:4,3 +chr22 39050030 . C G 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,2:9,8 +chr22 40149679 . CA C 0 PASS DP=34;GPV=1;SPV=0.0046348;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4 +chr22 40722477 . C CA 0 PASS DP=36;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:11,6:4,2 +chr22 41312439 . G A 0 PASS DP=49;GPV=1;SPV=0.091143;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,6:10,1:7,5 +chr22 42024930 . A G 0 PASS DP=68;GPV=1;SPV=0.0003718;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,6:11,6 +chr22 42055525 . G T 0 PASS DP=82;GPV=1;SPV=5.3881e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:11,9:15,13 +chr22 42424414 . C CA 0 PASS DP=48;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:7,8:9,3 +chr22 43032297 . C CT 0 PASS DP=27;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,1:4,4 +chr22 43417447 . C CT 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:2,4:6,5 +chr22 43705251 . G C 0 PASS DP=64;GPV=1;SPV=0.02165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:14,5:15,1 +chr22 43863195 . A C 0 PASS DP=37;GPV=1;SPV=0.0056305;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8 +chr22 44347793 . G T 0 PASS DP=87;GPV=1;SPV=0.00023745;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:38,15:18,3:20,12 +chr22 44408281 . G A 0 PASS DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,7:16,3 +chr22 44637661 . A G 0 PASS DP=86;GPV=1;SPV=8.388e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,2:16,11 +chr22 44854024 . CAAAAAAAA C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr22 44940388 . C A 0 PASS DP=72;GPV=1;SPV=0.024567;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:14,1:20,5 +chr22 45028914 . GGTTTTGCTCCCTCTACCTC G 0 PASS DP=54;GPV=1;SPV=0.008813;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,3:10,4 +chr22 45031952 . GTCAGGCATTCTAATGGAATTCAGGTATTCTAATGGAT G 0 PASS DP=45;GPV=1;SPV=0.11126;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,4:9,2 +chr22 46224970 . CT C 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,1:5,3 +chr22 46941418 . A AATAT 0 PASS DP=57;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,8:7,4:8,4 +chr22 48729291 . A T 0 PASS DP=36;GPV=1;SPV=0.053977;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,3:10,2 +chr22 49017619 . T C 0 PASS DP=60;GPV=1;SPV=0.038146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:17,7:17,2 +chr22 49017662 . T TC 0 PASS DP=59;GPV=1;SPV=0.024998;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:12,11:16,3 +chr22 49031662 . C T 0 PASS DP=59;GPV=1;SPV=0.00070453;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:14,4:4,4 +chr22 49149250 . G A 0 PASS DP=43;GPV=1;SPV=0.025733;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:4,7:13,3 +chr22 49700961 . C CT 0 PASS DP=63;GPV=1;SPV=0.0099688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:20,4:9,4 +chr3 811946 . G GCACCA 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,5:7,5 +chr3 2658965 . GACAC G 0 PASS DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:13,8:5,3 +chr3 2677449 . T TAGAG 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2 +chr3 2937137 . T C 0 PASS DP=69;GPV=1;SPV=3.2852e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,9:12,7 +chr3 3282501 . C T 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,3:7,4 +chr3 3284839 . T TTTCTTCTTCTTC 0 PASS DP=43;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr3 3763961 . GT G 0 PASS DP=37;GPV=1;SPV=0.0017181;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,10:1,7:1,3 +chr3 3790537 . A G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3 +chr3 4255552 . CAAG C 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3 +chr3 5827030 . T A 0 PASS DP=73;GPV=1;SPV=0.0030859;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:14,5:19,5 +chr3 6338735 . C T 0 PASS DP=60;GPV=1;SPV=0.026658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:17,6:13,1 +chr3 6802586 . C CT 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:2,4:5,5 +chr3 7939348 . C G 0 PASS DP=46;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,5:6,6 +chr3 8149448 . A C 0 PASS DP=35;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:3,1:1,1 +chr3 9218606 . T A 0 PASS DP=61;GPV=1;SPV=0.001437;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,5:10,6 +chr3 9323802 . C T 0 PASS DP=62;GPV=1;SPV=0.02826;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:15,5:18,3 +chr3 10410412 . C G 0 PASS DP=73;GPV=1;SPV=0.00021271;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:15,7:12,5 +chr3 12108899 . G A 0 PASS DP=55;GPV=1;SPV=0.0043761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,3:12,4 +chr3 13009209 . G T 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,3:12,4 +chr3 15272630 . CAT C 0 PASS DP=54;GPV=1;SPV=0.049315;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:16,3:9,6 +chr3 16761247 . T TTC 0 PASS DP=38;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2 +chr3 16761248 . C T 0 PASS DP=22;GPV=1;SPV=0.026224;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:1,5:3,1 +chr3 18084532 . T A 0 PASS DP=25;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:4,4:4,2 +chr3 18097749 . CTCA C 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,2:14,2 +chr3 18097755 . CTGA C 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2 +chr3 18097762 . A T 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,2:14,2 +chr3 18097763 . T C 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,2:15,2 +chr3 18097765 . T TA 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2 +chr3 18362860 . C CAAAAA 0 PASS DP=25;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:5,4:0,0 +chr3 19434174 . C G 0 PASS DP=58;GPV=1;SPV=0.0062647;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:11,5:17,7 +chr3 19562991 . AACACAC A 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr3 20061990 . A T 0 PASS DP=41;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1 +chr3 21229506 . A T 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,3:14,9 +chr3 21681698 . G GA 0 PASS DP=29;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,4:4,2 +chr3 21838694 . A T 0 PASS DP=59;GPV=1;SPV=0.00088019;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:15,6:9,7 +chr3 21881627 . A G 0 PASS DP=53;GPV=1;SPV=4.5681e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,19:7,12:4,7 +chr3 22697698 . G GAAAAGAAA 0 PASS DP=16;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,3:1,2:0,1 +chr3 23102581 . C G 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,5:13,1 +chr3 23420498 . G T 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:12,7:5,4 +chr3 23579384 . CA C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1 +chr3 23716050 . C T 0 PASS DP=33;GPV=1;SPV=0.0029924;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:5,5:3,7 +chr3 23883904 . C CAA 0 PASS DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:9,4:3,1 +chr3 23950902 . CTT C 0 PASS DP=31;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,3:6,6 +chr3 24375396 . G T 0 PASS DP=60;GPV=1;SPV=0.067038;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,5:10,2:8,3 +chr3 26821412 . G T 0 PASS DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,3:17,4 +chr3 27282571 . T TTATATATA 0 PASS DP=51;GPV=1;SPV=0.10815;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:16,4:14,2 +chr3 28563427 . A G 0 PASS DP=36;GPV=1;SPV=0.026091;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,6:6,5 +chr3 29109615 . C T 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,2:11,2 +chr3 29162145 . C CTT 0 PASS DP=41;GPV=1;SPV=0.016632;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,4:6,2 +chr3 29281114 . G GT 0 PASS DP=28;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,11:3,2:1,9 +chr3 30297039 . G GCACACA 0 PASS DP=36;GPV=1;SPV=0.020174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:11,3:2,3 +chr3 31489183 . T A 0 PASS DP=40;GPV=1;SPV=0.077118;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:18,5:3,1 +chr3 31738855 . T G 0 PASS DP=60;GPV=1;SPV=0.0033714;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,6:11,4 +chr3 31856069 . T TAC 0 PASS DP=51;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,10:7,6:3,4 +chr3 33166012 . C CAA 0 PASS DP=43;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,14:5,12:7,2 +chr3 33433365 . TA T 0 PASS DP=44;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,12:4,6:4,6 +chr3 33433367 . A T 0 PASS DP=34;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:3,5:4,5 +chr3 33715847 . TAA T 0 PASS DP=27;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,6:1,1 +chr3 33852925 . C CTT 0 PASS DP=30;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:2,6:1,2 +chr3 34676329 . A ATTGCACACTTGCAAATACCAGCAAGTGTGGTAT 0 PASS DP=51;GPV=1;SPV=0.17768;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2 +chr3 35057370 . T C 0 PASS DP=65;GPV=1;SPV=6.1031e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,8:12,3 +chr3 35671582 . T A 0 PASS DP=44;GPV=1;SPV=0.0090318;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:6,1:11,6 +chr3 36300868 . A ATACG 0 PASS DP=31;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1 +chr3 36533475 . GTTT G 0 PASS DP=32;GPV=1;SPV=0.046664;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,7:6,6:3,1 +chr3 38621506 . T C 0 PASS DP=59;GPV=1;SPV=0.0056191;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,3:10,6 +chr3 39571649 . C T 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,1:7,3 +chr3 40426107 . C CT 0 PASS DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1 +chr3 42416008 . C T 0 PASS DP=28;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,3:3,2:2,1 +chr3 43903722 . C CA 0 PASS DP=38;GPV=1;SPV=0.01463;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,7:5,1 +chr3 44126691 . G C 0 PASS DP=59;GPV=1;SPV=0.00014161;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,10:9,3 +chr3 45068384 . C T 0 PASS DP=62;GPV=1;SPV=0.00057944;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:14,7:10,5 +chr3 45415809 . T C 0 PASS DP=36;GPV=1;SPV=0.0063539;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,3:8,3 +chr3 46207649 . T A 0 PASS DP=53;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,2:3,1:3,1 +chr3 46488434 . G C 0 PASS DP=50;GPV=1;SPV=0.015626;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,1:13,6 +chr3 46759472 . G C 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2 +chr3 47241799 . G GTA 0 PASS DP=33;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,5:5,4 +chr3 47897378 . C G 0 PASS DP=64;GPV=1;SPV=0.00061829;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:11,4:15,9 +chr3 48509583 . CA C 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,6:5,3 +chr3 48554407 . C T 0 PASS DP=74;GPV=1;SPV=6.1955e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:21,10:7,6 +chr3 48665989 . CT C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,3:7,3 +chr3 49295716 . A G 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,2:9,2 +chr3 49849845 . T C 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,7:5,1 +chr3 49881334 . C A 0 PASS DP=79;GPV=1;SPV=0.00090214;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:17,3:10,5 +chr3 50850218 . G A 0 PASS DP=48;GPV=1;SPV=0.0018631;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,4:8,5 +chr3 50948033 . T C 0 PASS DP=37;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:2,7:11,3 +chr3 51193800 . T TA 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,1:12,3 +chr3 51249008 . C A 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,3:8,1 +chr3 52283819 . TAA T 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,2:10,3 +chr3 54141061 . C CTGTGTGTGTGTGTGTG 0 PASS DP=23;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:0,3:2,3 +chr3 54910793 . A C 0 PASS DP=56;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3 +chr3 55549477 . C CT 0 PASS DP=21;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:0,2:2,4 +chr3 55842076 . G C 0 PASS DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:14,2:16,3 +chr3 56032975 . A G 0 PASS DP=48;GPV=1;SPV=0.038416;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,4:6,1 +chr3 56906975 . A ATT 0 PASS DP=33;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:8,4:1,1 +chr3 58033635 . C T 0 PASS DP=89;GPV=1;SPV=0.0039417;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:18,4:23,5 +chr3 58328961 . A G 0 PASS DP=56;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:1,2:0,0:1,2 +chr3 59215302 . ATATAT A 0 PASS DP=42;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1 +chr3 59797192 . T A 0 PASS DP=61;GPV=1;SPV=0.0054287;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:18,6:9,3 +chr3 60038012 . C T 0 PASS DP=67;GPV=1;SPV=0.0074978;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,4:11,4 +chr3 60614820 . G T 0 PASS DP=25;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:6,5:3,1 +chr3 61600173 . AAT A 0 PASS DP=36;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:2,4:5,1 +chr3 65122609 . G A 0 PASS DP=45;GPV=1;SPV=0.00064998;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,19:5,9:7,10 +chr3 67947115 . T TTTTATTTATTTATTTATTTATTTA 0 PASS DP=38;GPV=1;SPV=0.077195;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:10,3:8,2 +chr3 68262307 . GTATATATATATATATATA G 0 PASS DP=18;GPV=1;SPV=0.29371;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2 +chr3 68461282 . A AAAAC 0 PASS DP=32;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,5:4,2 +chr3 69225519 . C CA 0 PASS DP=32;GPV=1;SPV=0.015535;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,11:6,9:2,2 +chr3 69242478 . ATTTTTTTTTTTT A 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2 +chr3 69418822 . A ATGTG 0 PASS DP=39;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,6:10,4 +chr3 71937988 . C CTGTG 0 PASS DP=56;GPV=1;SPV=0.015417;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6 +chr3 72633690 . G T 0 PASS DP=58;GPV=1;SPV=0.0034744;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:17,6:10,8 +chr3 73347437 . T C 0 PASS DP=40;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,1:8,3 +chr3 73534019 . C A 0 PASS DP=74;GPV=1;SPV=0.0064143;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:19,5:16,4 +chr3 74269048 . G GA 0 PASS DP=44;GPV=1;SPV=0.0043101;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,6:5,1 +chr3 75096062 . C T 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1 +chr3 75643476 . C T 0 PASS DP=142;GPV=1;SPV=0.046603;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:61,16:36,8:25,8 +chr3 75785855 . G GA 0 PASS DP=163;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:76,19:36,10:40,9 +chr3 75811514 . G A 0 PASS DP=138;GPV=1;SPV=0.037707;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:72,12:30,5:42,7 +chr3 76425510 . G C 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,1:11,3 +chr3 76719798 . C T 0 PASS DP=67;GPV=1;SPV=0.020851;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:10,4:17,1 +chr3 76811818 . CTTCCTTCCTTCCTTCCTTCT C 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4 +chr3 76834013 . C T 0 PASS DP=43;GPV=1;SPV=0.036896;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,10:2,3:8,7 +chr3 77077386 . C T 0 PASS DP=67;GPV=1;SPV=0.0004715;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4 +chr3 77323024 . ATATAT A 0 PASS DP=76;GPV=1;SPV=0.038499;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,8:19,4:9,4 +chr3 78310768 . GAAGA G 0 PASS DP=43;GPV=1;SPV=0.014912;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,5:6,2:4,3 +chr3 78388527 . C CATCTGCCTGTTACCCAGTTCCAAA 0 PASS DP=42;GPV=1;SPV=0.0090305;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:2,2:8,6 +chr3 78407100 . C CAA 0 PASS DP=44;GPV=1;SPV=0.054402;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1 +chr3 78711440 . T C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3 +chr3 79221172 . G A 0 PASS DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:17,3:15,4 +chr3 79411983 . G T 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,3:13,2 +chr3 80015600 . C A 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:2,10:7,3 +chr3 80976113 . A AT 0 PASS DP=51;GPV=1;SPV=0.03148;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:8,2:8,7 +chr3 80976130 . A AT 0 PASS DP=51;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:6,2:4,5 +chr3 83176263 . T G 0 PASS DP=68;GPV=1;SPV=0.0003718;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,8:14,4 +chr3 86335842 . TTTTA T 0 PASS DP=64;GPV=1;SPV=0.024474;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:7,3:21,6 +chr3 86995549 . A T 0 PASS DP=20;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:4,2:0,0 +chr3 86995551 . T TAC 0 PASS DP=19;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,3:2,2:0,1 +chr3 87249132 . C G 0 PASS DP=65;GPV=1;SPV=0.0027508;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:18,5:7,3 +chr3 88009796 . CA C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:9,6:1,3 +chr3 88324586 . T C 0 PASS DP=63;GPV=1;SPV=0.0016295;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:13,6:11,3 +chr3 90140539 . ATT A 0 PASS DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1 +chr3 90792691 . T C 0 PASS DP=49;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,1:24,3 +chr3 90793168 . G A 0 PASS DP=47;GPV=1;SPV=0.044239;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:19,4:4,2 +chr3 90794556 . G A 0 PASS DP=172;GPV=1;SPV=0.03166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:74,12:39,9:35,3 +chr3 90795159 . G C 0 PASS DP=145;GPV=1;SPV=0.028927;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:62,4:8,4 +chr3 90802407 . G T 0 PASS DP=41;GPV=1;SPV=0.070897;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,3:14,2 +chr3 90806554 . C A 0 PASS DP=161;GPV=1;SPV=0.014168;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:80,13:48,11:32,2 +chr3 90807066 . G A 0 PASS DP=61;GPV=1;SPV=0.11288;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,0:32,4 +chr3 90819164 . A G 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr3 90868586 . C G 0 PASS DP=445;GPV=1;SPV=0.018445;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:186,34:130,24:56,10 +chr3 90869777 . A T 0 PASS DP=78;GPV=1;SPV=0.0071078;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:2,9:26,5 +chr3 90889577 . C T 0 PASS DP=147;GPV=1;SPV=0.018335;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:65,20:12,9:53,11 +chr3 90900435 . G A 0 PASS DP=170;GPV=1;SPV=0.044262;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:81,9:15,2:66,7 +chr3 90904126 . A T 0 PASS DP=62;GPV=1;SPV=0.026131;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:4,2:25,9 +chr3 90939861 . C G 0 PASS DP=72;GPV=1;SPV=0.017899;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:24,7:7,2 +chr3 90948616 . G A 0 PASS DP=68;GPV=1;SPV=0.044393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:6,2:21,4 +chr3 90988846 . C T 0 PASS DP=758;GPV=1;SPV=0.02669;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:431:385,46:385,45:0,1 +chr3 90999996 . A T 0 PASS DP=99;GPV=1;SPV=0.046078;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:15,3:28,8 +chr3 91019218 . C G 0 PASS DP=78;GPV=1;SPV=0.043528;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:30,4:2,0 +chr3 91063898 . C G 0 PASS DP=24;GPV=1;SPV=0.012749;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr3 91082603 . GT G 0 PASS DP=112;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,11:24,9:30,2 +chr3 91082660 . C G 0 PASS DP=92;GPV=1;SPV=0.0061213;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:15,7:30,2 +chr3 91128600 . G C 0 PASS DP=60;GPV=1;SPV=0.0031056;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:1,8:18,1 +chr3 91141548 . A C 0 PASS DP=155;GPV=1;SPV=0.03166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:85,10:12,4:73,6 +chr3 91179559 . A G 0 PASS DP=51;GPV=1;SPV=0.26429;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:31,4:2,0 +chr3 91187298 . A T 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr3 91222727 . C T 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4 +chr3 91229920 . G T 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:14,3:0,3 +chr3 94740829 . G T 0 PASS DP=60;GPV=1;SPV=0.00085567;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,2:11,8 +chr3 95832587 . T C 0 PASS DP=25;GPV=1;SPV=0.0074891;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,2:1,3 +chr3 96005104 . A T 0 PASS DP=64;GPV=1;SPV=0.046272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,8:16,1 +chr3 96317750 . G GTTT 0 PASS DP=39;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,4:4,3 +chr3 97319442 . C T 0 PASS DP=60;GPV=1;SPV=0.00059631;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,5:11,7 +chr3 98538904 . CTT C 0 PASS DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1 +chr3 98838390 . G A 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,4:10,5 +chr3 99691705 . A T 0 PASS DP=29;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,12:4,6:4,6 +chr3 103044860 . T C 0 PASS DP=62;GPV=1;SPV=0.0048152;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,2:14,4 +chr3 105280352 . C T 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3 +chr3 105470134 . C T 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,4:8,2 +chr3 106707358 . A AT 0 PASS DP=37;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:5,3:8,2 +chr3 106707369 . T TA 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chr3 106875480 . A C 0 PASS DP=67;GPV=1;SPV=0.014512;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:18,3:13,4 +chr3 108720876 . C A 0 PASS DP=60;GPV=1;SPV=0.00089447;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,6:12,6 +chr3 109317351 . A C 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr3 111807946 . GT G 0 PASS DP=41;GPV=1;SPV=0.013238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:9,4:1,4 +chr3 114544406 . CTTCT C 0 PASS DP=27;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,2:7,4 +chr3 116618234 . C T 0 PASS DP=53;GPV=1;SPV=0.0015408;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,6:9,4 +chr3 116760286 . CAA C 0 PASS DP=26;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,4:3,1 +chr3 117050840 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr3 117634731 . C CTT 0 PASS DP=35;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,11:6,5:5,6 +chr3 118647946 . A G 0 PASS DP=63;GPV=1;SPV=0.020447;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:15,12:4,7:11,5 +chr3 120151071 . ATT A 0 PASS DP=51;GPV=1;SPV=0.078283;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,4:19,3 +chr3 121253810 . C T 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,3:2,4 +chr3 121764195 . A AACACACACAC 0 PASS DP=52;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,10:13,6:6,4 +chr3 122009324 . A AACACACACACAC 0 PASS DP=30;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:0,2:4,3 +chr3 122145747 . G C 0 PASS DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,6:9,4 +chr3 124044897 . C CT 0 PASS DP=43;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,9:3,2:11,7 +chr3 124495729 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:0,4:7,3 +chr3 124668043 . G GAC 0 PASS DP=37;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,11:3,4:3,7 +chr3 125813770 . A T 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,7:8,3 +chr3 126336272 . A C 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,1:12,3 +chr3 127184619 . C A 0 PASS DP=63;GPV=1;SPV=0.0089538;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,4:14,5 +chr3 127947372 . G A 0 PASS DP=55;GPV=1;SPV=0.0058348;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,5:13,2 +chr3 131586850 . G T 0 PASS DP=77;GPV=1;SPV=0.00065864;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:20,5:16,12 +chr3 133003397 . A ATG 0 PASS DP=40;GPV=1;SPV=0.033935;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:9,6:6,3 +chr3 133044974 . T TTC 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,1:14,5 +chr3 133091223 . C A 0 PASS DP=62;GPV=1;SPV=0.00041251;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,7:9,3 +chr3 133158465 . TA T 0 PASS DP=36;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,19:6,13:3,6 +chr3 133425913 . G GGGCAAGGGAA 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr3 134321577 . CT C 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,3:5,3 +chr3 134401573 . C T 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,3:19,1 +chr3 134858009 . C A 0 PASS DP=82;GPV=1;SPV=0.00021937;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:16,6:18,8 +chr3 135253682 . A C 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,2:5,7 +chr3 135390016 . C CA 0 PASS DP=54;GPV=1;SPV=0.058582;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,6:13,4:15,2 +chr3 136439389 . GAC G 0 PASS DP=43;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:14,6:3,1 +chr3 137135157 . G C 0 PASS DP=77;GPV=1;SPV=0.030261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:18,2:25,6 +chr3 140079750 . C CAAAAAAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:17,3:10,2 +chr3 140513583 . C CT 0 PASS DP=21;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,5:2,1 +chr3 140654957 . G C 0 PASS DP=70;GPV=1;SPV=0.0036574;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:17,5:17,7 +chr3 143284404 . A AT 0 PASS DP=56;GPV=1;SPV=0.00073094;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:8,10:10,13 +chr3 144954711 . T TTTTTTTG 0 PASS DP=50;GPV=1;SPV=0.013096;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,11:8,6:6,5 +chr3 144955970 . G C 0 PASS DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,3:16,6 +chr3 147159575 . G GTT 0 PASS DP=35;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:6,4:8,3 +chr3 147859108 . G T 0 PASS DP=70;GPV=1;SPV=0.0010857;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,3:11,6 +chr3 148642510 . C CAAA 0 PASS DP=51;GPV=1;SPV=0.040129;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,15:10,13:10,2 +chr3 148822292 . CA C 0 PASS DP=52;GPV=1;SPV=0.074323;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:23,7:8,5 +chr3 149184023 . TA T 0 PASS DP=20;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:2,1:2,1 +chr3 149853455 . GGAGAGAGAGA G 0 PASS DP=37;GPV=1;SPV=0.0061246;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:4,8:2,1 +chr3 150028648 . C T 0 PASS DP=54;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,5:11,3:8,2 +chr3 150211910 . A T 0 PASS DP=52;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:3,2:1,1:2,1 +chr3 151031259 . GAT G 0 PASS DP=32;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:14,2:2,2 +chr3 151072525 . C CT 0 PASS DP=43;GPV=1;SPV=0.0073228;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:9,5:5,6 +chr3 151547425 . T TAC 0 PASS DP=52;GPV=1;SPV=0.031932;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:9,4:17,3 +chr3 151547427 . T C 0 PASS DP=49;GPV=1;SPV=0.031946;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,8:7,5:11,3 +chr3 151850080 . GT G 0 PASS DP=65;GPV=1;SPV=0.00066677;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,12:10,8 +chr3 152104773 . TAAAAAAAAAAAAAAAAAAAAAAAAAAA T 0 PASS DP=36;GPV=1;SPV=0.021839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,6:6,4 +chr3 153009169 . A AAT 0 PASS DP=45;GPV=1;SPV=0.020164;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:11,5:3,5 +chr3 153520081 . CT C 0 PASS DP=47;GPV=1;SPV=0.084394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2 +chr3 154618292 . G GAGAA 0 PASS DP=53;GPV=1;SPV=0.0085378;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,13:9,11:5,2 +chr3 158758484 . G A 0 PASS DP=66;GPV=1;SPV=0.0073874;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,4:18,5 +chr3 158891833 . G GTGTGTATGTA 0 PASS DP=22;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,4:2,3:0,1 +chr3 158923448 . A T 0 PASS DP=86;GPV=1;SPV=0.0021714;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:22,5:21,8 +chr3 159818570 . G T 0 PASS DP=86;GPV=1;SPV=0.015987;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:22,1:20,6 +chr3 160906602 . T TAAAGAAAAAAAAGAAAAGA 0 PASS DP=60;GPV=1;SPV=0.046809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,10:10,6:18,4 +chr3 161840354 . G T 0 PASS DP=61;GPV=1;SPV=0.02204;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,5:16,5 +chr3 162199912 . T C 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,5:5,1 +chr3 162590763 . TATACAC T 0 PASS DP=48;GPV=1;SPV=0.083225;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,1:14,4 +chr3 163402299 . GTT G 0 PASS DP=40;GPV=1;SPV=0.17207;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,6:16,4:7,2 +chr3 163502562 . A G 0 PASS DP=68;GPV=1;SPV=0.0090481;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:11,3:22,6 +chr3 163604681 . A ATAT 0 PASS DP=50;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,14:4,8:3,6 +chr3 164207930 . T G 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3 +chr3 164363535 . C A 0 PASS DP=60;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:9,6:4,5:5,1 +chr3 164386069 . G A 0 PASS DP=60;GPV=1;SPV=0.042571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,8:14,1 +chr3 164537163 . C T 0 PASS DP=34;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,4:2,2:4,2 +chr3 164604251 . C T 0 PASS DP=77;GPV=1;SPV=0.0052479;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:20,5:11,2 +chr3 165771059 . A T 0 PASS DP=63;GPV=1;SPV=0.066176;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,2:18,4 +chr3 165883390 . T A 0 PASS DP=64;GPV=1;SPV=5.8703e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:13,7:9,8 +chr3 166073224 . C G 0 PASS DP=66;GPV=1;SPV=0.0030133;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:12,7:17,3 +chr3 166106743 . CTTTT C 0 PASS DP=31;GPV=1;SPV=0.0018733;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,15:4,11:2,4 +chr3 167488145 . A AAC 0 PASS DP=39;GPV=1;SPV=0.0052134;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,12:7,9:7,3 +chr3 168370031 . C CA 0 PASS DP=33;GPV=1;SPV=0.033902;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,8:6,1 +chr3 168578212 . CATTT C 0 PASS DP=60;GPV=1;SPV=0.00014877;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,21:8,10:8,11 +chr3 168830673 . T A 0 PASS DP=66;GPV=1;SPV=0.12152;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,3:17,2 +chr3 169378591 . T A 0 PASS DP=40;GPV=1;SPV=0.0041535;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:8,7:1,1 +chr3 170140627 . C T 0 PASS DP=42;GPV=1;SPV=0.032608;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,6:7,8 +chr3 170336573 . TC T 0 PASS DP=43;GPV=1;SPV=0.15679;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:16,1:7,3 +chr3 170382413 . A AT 0 PASS DP=46;GPV=1;SPV=0.001414;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,14:8,8:3,6 +chr3 170577624 . CA C 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr3 171301124 . A C 0 PASS DP=56;GPV=1;SPV=0.00053399;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:9,9:13,7 +chr3 171310223 . G A 0 PASS DP=52;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,2:11,2 +chr3 171310226 . A ATATGACTCACAG 0 PASS DP=48;GPV=1;SPV=0.041011;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2 +chr3 171310228 . G T 0 PASS DP=52;GPV=1;SPV=0.042521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:9,2:11,2 +chr3 172504674 . CT C 0 PASS DP=51;GPV=1;SPV=0.0086143;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:7,9:13,8 +chr3 172701449 . C CTTTT 0 PASS DP=35;GPV=1;SPV=0.010683;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5 +chr3 172797018 . C CTGTGTGTGTGTG 0 PASS DP=53;GPV=1;SPV=0.0095255;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,11:10,3 +chr3 173392472 . C CA 0 PASS DP=51;GPV=1;SPV=0.016244;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,10:8,9:9,1 +chr3 174090019 . C A 0 PASS DP=61;GPV=1;SPV=0.020202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,5:19,4 +chr3 174625059 . T C 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,2:3,3 +chr3 174698931 . T TTA 0 PASS DP=42;GPV=1;SPV=0.032608;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:4,4:13,6 +chr3 174698967 . G GTATATA 0 PASS DP=41;GPV=1;SPV=0.032529;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:6,4:14,4 +chr3 175061728 . A AATATATAT 0 PASS DP=47;GPV=1;SPV=0.0085423;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:10,7:6,3 +chr3 175849410 . C CATATAT 0 PASS DP=20;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:2,4:2,1 +chr3 176233797 . T C 0 PASS DP=34;GPV=1;SPV=0.0070885;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1 +chr3 177312931 . CT C 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:2,8:6,4 +chr3 177819193 . C CT 0 PASS DP=37;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:3,6:3,3 +chr3 177939576 . A AAG 0 PASS DP=84;GPV=1;SPV=0.039093;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:28,2:16,4 +chr3 178163969 . T TA 0 PASS DP=53;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:15,6:6,5 +chr3 178517187 . CTGTG C 0 PASS DP=56;GPV=1;SPV=0.0023791;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,16:7,11:6,5 +chr3 178568854 . T TA 0 PASS DP=54;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,4:10,2:7,2 +chr3 178757829 . C A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,2:3,2 +chr3 178757830 . C T 0 PASS DP=23;GPV=1;SPV=0.12422;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:9,3:6,1:3,2 +chr3 178838570 . CA C 0 PASS DP=45;GPV=1;SPV=0.034981;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,9:9,6 +chr3 180248085 . CTTCTT C 0 PASS DP=35;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:6,6:7,3 +chr3 180333476 . T C 0 PASS DP=70;GPV=1;SPV=0.041472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,3:14,2 +chr3 180873483 . T G 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,2:15,2 +chr3 181121602 . G T 0 PASS DP=76;GPV=1;SPV=0.00022269;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:12,13:21,5 +chr3 181950827 . C G 0 PASS DP=76;GPV=1;SPV=0.11468;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:18,1:27,4 +chr3 182590903 . T A 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chr3 183164314 . G GTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.007971;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1 +chr3 183321454 . G A 0 PASS DP=50;GPV=1;SPV=0.22736;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:10,1:21,3 +chr3 183519895 . CAA C 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2 +chr3 183622530 . A AAAGG 0 PASS DP=47;GPV=1;SPV=0.2649;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,4:19,3:9,1 +chr3 183957716 . A G 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,2:15,2 +chr3 184500646 . A G 0 PASS DP=86;GPV=1;SPV=0.0046257;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:17,7:28,5 +chr3 185875280 . G GTA 0 PASS DP=50;GPV=1;SPV=0.015957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,7:12,3 +chr3 185912906 . C CA 0 PASS DP=46;GPV=1;SPV=0.00034897;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,14:10,8:4,6 +chr3 186995505 . C CA 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,7:2,1 +chr3 187268547 . AAT A 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,2:7,3 +chr3 187573591 . G A 0 PASS DP=79;GPV=1;SPV=0.008152;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:20,6:24,8 +chr3 188182772 . T C 0 PASS DP=47;GPV=1;SPV=0.046124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,13:8,11:12,2 +chr3 189483916 . G T 0 PASS DP=84;GPV=1;SPV=0.00034436;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:11,7:23,5 +chr3 189697231 . C CA 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,5:3,5 +chr3 189942884 . G A 0 PASS DP=71;GPV=1;SPV=0.0030392;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:15,7:19,5 +chr3 190489200 . TCTTCCTTCCTTCCTTCCTCTCTTC T 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,1:6,9 +chr3 191216854 . T C 0 PASS DP=64;GPV=1;SPV=0.017938;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,2:14,4 +chr3 191619293 . A G 0 PASS DP=46;GPV=1;SPV=0.040043;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,5:1,3:0,2 +chr3 192158675 . T TCC 0 PASS DP=18;GPV=1;SPV=0.015152;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,4:0,1:0,3 +chr3 193418065 . T G 0 PASS DP=37;GPV=1;SPV=0.0070131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:5,6:6,9 +chr3 194143191 . CAAAA C 0 PASS DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,7:6,1 +chr3 194324950 . T C 0 PASS DP=35;GPV=1;SPV=0.22386;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:7,4:13,1 +chr3 194526987 . A G 0 PASS DP=39;GPV=1;SPV=0.090728;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:18,2:3,4 +chr3 194846551 . TGAA T 0 PASS DP=71;GPV=1;SPV=0.055365;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:30,5:11,2 +chr3 195067358 . A ACCTC 0 PASS DP=42;GPV=1;SPV=0.0088119;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:5,8:9,4 +chr3 195483671 . C T 0 PASS DP=230;GPV=1;SPV=0.0063764;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:128,28:60,12:68,16 +chr3 195491737 . C A 0 PASS DP=55;GPV=1;SPV=0.067189;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:11,3:19,3 +chr3 195502702 . C A 0 PASS DP=55;GPV=1;SPV=0.10544;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3 +chr3 195502739 . G C 0 PASS DP=60;GPV=1;SPV=0.095104;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3 +chr3 195661457 . T C 0 PASS DP=46;GPV=1;SPV=0.25076;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,3:10,1 +chr3 195667466 . A G 0 PASS DP=44;GPV=1;SPV=0.10935;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,1:10,4 +chr3 195750391 . AGGCCT A 0 PASS DP=43;GPV=1;SPV=0.0069124;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,7:5,3 +chr3 195786809 . A T 0 PASS DP=42;GPV=1;SPV=9.7816e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:7,7:4,6 +chr3 195812455 . C CTCAGTG 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3 +chr3 195866336 . G A 0 PASS DP=66;GPV=1;SPV=0.00086166;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:15,8:13,5 +chr3 196462980 . T C 0 PASS DP=28;GPV=1;SPV=0.0070913;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:4,3:2,7 +chr3 196973207 . T G 0 PASS DP=66;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,6:15,2:12,4 +chr3 197513494 . A C 0 PASS DP=67;GPV=1;SPV=0.045056;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,4:18,2 +chr3 197617964 . G A 0 PASS DP=80;GPV=1;SPV=0.076398;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:13,1:34,5 +chr3 197630964 . G T 0 PASS DP=83;GPV=1;SPV=0.072974;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:25,3:20,2 +chr3 198099324 . C A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr4 1641147 . C T 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3 +chr4 1690259 . T A 0 PASS DP=49;GPV=1;SPV=0.1056;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:16,4:11,1 +chr4 3522099 . C T 0 PASS DP=82;GPV=1;SPV=7.9857e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,9:10,4 +chr4 4065631 . G T 0 PASS DP=47;GPV=1;SPV=0.0094013;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,4:8,2 +chr4 4891540 . G GGT 0 PASS DP=45;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,12:4,3:1,9 +chr4 5762728 . T C 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,2:7,4 +chr4 6012995 . G A 0 PASS DP=83;GPV=1;SPV=0.0003546;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,7:17,7 +chr4 7895852 . G GTT 0 PASS DP=27;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:1,8:2,1 +chr4 8919107 . TC T 0 PASS DP=42;GPV=1;SPV=0.071818;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,1:9,5 +chr4 9245168 . G C 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:0,0:30,4 +chr4 9253009 . T A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr4 10096558 . CACTACGA C 0 PASS DP=64;GPV=1;SPV=0.0068367;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:9,5:19,3 +chr4 10380072 . C T 0 PASS DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,4:5,2 +chr4 10894438 . A ATGTGTGTG 0 PASS DP=35;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:6,5:5,1 +chr4 16303360 . A G 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2 +chr4 17459743 . C A 0 PASS DP=65;GPV=1;SPV=0.0094928;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7 +chr4 18140794 . T C 0 PASS DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:6,4:11,5 +chr4 18384018 . A G 0 PASS DP=59;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:1,4:1,2:0,2 +chr4 18837294 . C G 0 PASS DP=40;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,3:0,1:2,2 +chr4 18851445 . G T 0 PASS DP=58;GPV=1;SPV=0.0030535;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,1:15,7 +chr4 19416219 . T A 0 PASS DP=76;GPV=1;SPV=0.0076904;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:19,6:16,2 +chr4 21534948 . C T 0 PASS DP=59;GPV=1;SPV=0.013492;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:18,5:12,5 +chr4 23721457 . T TG 0 PASS DP=30;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,1:3,5 +chr4 23859780 . CAAAATAAAATAAAATAAAAT C 0 PASS DP=30;GPV=1;SPV=0.20158;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:5,2:8,3 +chr4 24387746 . AAGAG A 0 PASS DP=36;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:5,2:11,2 +chr4 24416559 . G C 0 PASS DP=72;GPV=1;SPV=0.00073216;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,3:17,10 +chr4 24503955 . A C 0 PASS DP=93;GPV=1;SPV=0.016099;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:16,3:26,3 +chr4 25612012 . C CA 0 PASS DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1 +chr4 26028535 . C T 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:1,3:15,1 +chr4 26153944 . T A 0 PASS DP=54;GPV=1;SPV=0.00088132;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:7,6:11,3 +chr4 26244403 . ATG A 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,4:3,4 +chr4 27930275 . A ATTTTTTT 0 PASS DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,3:6,2 +chr4 29338563 . T G 0 PASS DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:18,7:12,4 +chr4 29990623 . A C 0 PASS DP=49;GPV=1;SPV=0.0049228;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:8,5:11,3 +chr4 30265706 . T A 0 PASS DP=68;GPV=1;SPV=0.00014298;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:16,7:10,8 +chr4 30545108 . ATT A 0 PASS DP=41;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:11,4:2,5 +chr4 30969410 . C T 0 PASS DP=49;GPV=1;SPV=4.5431e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,21:5,10:6,11 +chr4 32619397 . TTA T 0 PASS DP=58;GPV=1;SPV=0.00064391;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:10,9:7,10 +chr4 32868624 . A AT 0 PASS DP=34;GPV=1;SPV=0.009581;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:6,3:5,5 +chr4 32870349 . C T 0 PASS DP=79;GPV=1;SPV=0.0064316;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,3:15,4 +chr4 33477438 . C CT 0 PASS DP=67;GPV=1;SPV=0.11157;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,5:12,2:25,3 +chr4 36484889 . AATATATATTAGTTTATATATATAAT A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,2:14,2 +chr4 37667875 . C G 0 PASS DP=48;GPV=1;SPV=0.00037684;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:5,7:6,10 +chr4 37717454 . G GA 0 PASS DP=37;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,4:0,4:0,0 +chr4 37846536 . C G 0 PASS DP=75;GPV=1;SPV=0.00041007;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:17,8:14,5 +chr4 40440334 . G A 0 PASS DP=56;GPV=1;SPV=0.0051054;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,3:11,4 +chr4 40536472 . G T 0 PASS DP=61;GPV=1;SPV=0.008555;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:16,1:7,5 +chr4 41688196 . C A 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,2:16,2 +chr4 42269487 . AT A 0 PASS DP=16;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,1:0,2 +chr4 44068258 . C T 0 PASS DP=68;GPV=1;SPV=0.0050026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:17,6:16,5 +chr4 45463386 . G C 0 PASS DP=61;GPV=1;SPV=0.0007185;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:9,8:15,4 +chr4 46482995 . G A 0 PASS DP=53;GPV=1;SPV=0.0010272;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,8:8,2 +chr4 46880412 . CT C 0 PASS DP=23;GPV=1;SPV=0.016783;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,5:2,1 +chr4 47607316 . G T 0 PASS DP=61;GPV=1;SPV=0.010694;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,3:11,3 +chr4 48206777 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,7:3,2 +chr4 48663336 . AT A 0 PASS DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chr4 49106475 . T A 0 PASS DP=82;GPV=1;SPV=0.06273;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:18,3:28,3 +chr4 49143684 . A C 0 PASS DP=51;GPV=1;SPV=0.021804;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:14,4:11,4 +chr4 49146153 . T A 0 PASS DP=48;GPV=1;SPV=0.037765;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,6:8,1:12,5 +chr4 49154652 . ATTCCATTCCATTCCG A 0 PASS DP=128;GPV=1;SPV=0.0046134;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:51,12:22,4:29,8 +chr4 49176935 . C T 0 PASS DP=127;GPV=1;SPV=0.0016415;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:57,23:28,9:29,14 +chr4 49189440 . A G 0 PASS DP=164;GPV=1;SPV=0.04566;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:79,14:43,5:36,9 +chr4 49189600 . T A 0 PASS DP=131;GPV=1;SPV=0.043504;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:21,3:41,4 +chr4 49191971 . T C 0 PASS DP=170;GPV=1;SPV=0.011176;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:76,11:41,8:35,3 +chr4 49247362 . A C 0 PASS DP=436;GPV=1;SPV=0.015707;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:213,27:110,14:103,13 +chr4 49247728 . G T 0 PASS DP=283;GPV=1;SPV=0.044397;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:43,7:87,20 +chr4 49251622 . G T 0 PASS DP=431;GPV=1;SPV=0.043034;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:201,32:106,16:95,16 +chr4 49258258 . G C 0 PASS DP=139;GPV=1;SPV=0.045994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:35,3:26,5 +chr4 49262059 . G T 0 PASS DP=127;GPV=1;SPV=0.046309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:37,1:22,8 +chr4 49262142 . C G 0 PASS DP=130;GPV=1;SPV=0.037371;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:62,10:35,2:27,8 +chr4 49266887 . A T 0 PASS DP=165;GPV=1;SPV=0.036057;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,9:31,7:38,2 +chr4 49271516 . C A 0 PASS DP=514;GPV=1;SPV=0.04954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:299:264,35:103,19:161,16 +chr4 49272320 . CAG C 0 PASS DP=318;GPV=1;SPV=0.020118;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:149,26:92,18:57,8 +chr4 49273776 . A C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr4 49499983 . T A 0 PASS DP=151;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:76,9:34,2:42,7 +chr4 49528367 . C G 0 PASS DP=167;GPV=1;SPV=0.008798;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:42,11:33,9 +chr4 49528580 . C T 0 PASS DP=152;GPV=1;SPV=0.016846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:38,8:33,9 +chr4 49536801 . C A 0 PASS DP=75;GPV=1;SPV=0.079421;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:25,3:16,2 +chr4 49537004 . A T 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:27,4:6,1 +chr4 49539589 . G T 0 PASS DP=253;GPV=1;SPV=0.012202;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:108,25:32,6:76,19 +chr4 49542594 . T A 0 PASS DP=341;GPV=1;SPV=0.028817;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:148,19:111,14:37,5 +chr4 49556231 . G T 0 PASS DP=96;GPV=1;SPV=0.023936;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:21,6:20,4 +chr4 49564230 . C T 0 PASS DP=97;GPV=1;SPV=0.023277;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:17,6:22,3 +chr4 49577931 . G A 0 PASS DP=483;GPV=1;SPV=0.016158;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:271:243,28:118,13:125,15 +chr4 49623865 . T G 0 PASS DP=74;GPV=1;SPV=0.01036;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,5:15,2 +chr4 49623899 . A G 0 PASS DP=77;GPV=1;SPV=0.040811;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:16,2:15,2 +chr4 49769446 . A T 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:17,3:5,1 +chr4 49792161 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr4 49811692 . A G 0 PASS DP=140;GPV=1;SPV=0.007853;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:70,8:16,4:54,4 +chr4 49851853 . A G 0 PASS DP=51;GPV=1;SPV=0.059824;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,1:12,3 +chr4 50070268 . G A 0 PASS DP=36;GPV=1;SPV=0.053977;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:3,2:13,3 +chr4 50396563 . A T 0 PASS DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:2,0:25,4 +chr4 50500851 . C G 0 PASS DP=32;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,5:8,1 +chr4 51168884 . AT A 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,2:8,2 +chr4 51168890 . A T 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2 +chr4 51299531 . C G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0 +chr4 51800205 . C T 0 PASS DP=78;GPV=1;SPV=0.027526;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,9:21,1:21,8 +chr4 51805358 . T A 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:31,4:2,0 +chr4 51869177 . T TA 0 PASS DP=33;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:4,7:5,5 +chr4 52529341 . G A 0 PASS DP=72;GPV=1;SPV=5.4898e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,11:14,4 +chr4 52805823 . G A 0 PASS DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:9,6:12,7 +chr4 54390724 . C T 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:11,2:17,7 +chr4 54896152 . G A 0 PASS DP=65;GPV=1;SPV=0.0022419;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:7,6:15,1 +chr4 55535739 . C CTT 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr4 57299586 . T C 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,3:8,1 +chr4 57299587 . G A 0 PASS DP=44;GPV=1;SPV=0.15645;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:18,4:8,1 +chr4 58068918 . C CTT 0 PASS DP=33;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,9:0,8:2,1 +chr4 58641958 . A ATTTTT 0 PASS DP=28;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,11:4,5:2,6 +chr4 58875435 . A G 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,3:8,1 +chr4 60180653 . T G 0 PASS DP=53;GPV=1;SPV=0.021244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:19,5:8,4 +chr4 61040718 . A AAG 0 PASS DP=24;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:4,2:4,2 +chr4 62942582 . G A 0 PASS DP=59;GPV=1;SPV=0.0083613;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,4:13,2 +chr4 63780494 . C T 0 PASS DP=78;GPV=1;SPV=0.00051624;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:10,4:17,5 +chr4 64291817 . A C 0 PASS DP=61;GPV=1;SPV=0.0046664;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,2:11,5 +chr4 64834601 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr4 65170525 . A T 0 PASS DP=71;GPV=1;SPV=0.0031867;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,3:15,7 +chr4 65536762 . AT A 0 PASS DP=61;GPV=1;SPV=0.01326;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,2:12,4 +chr4 65867467 . C G 0 PASS DP=21;GPV=1;SPV=0.017857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,5:0,4:0,1 +chr4 66225901 . G C 0 PASS DP=60;GPV=1;SPV=0.0022875;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:7,7:15,1 +chr4 66922720 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,3:5,1 +chr4 66954819 . G T 0 PASS DP=60;GPV=1;SPV=2.0129e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,9:6,4 +chr4 67112889 . T A 0 PASS DP=48;GPV=1;SPV=0.02659;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:10,4:15,7 +chr4 68374231 . A AT 0 PASS DP=41;GPV=1;SPV=0.00061425;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:5,6:6,3 +chr4 68708239 . C A 0 PASS DP=58;GPV=1;SPV=0.0072434;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,1:15,7 +chr4 69762151 . C G 0 PASS DP=61;GPV=1;SPV=0.051532;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:13,6:21,1 +chr4 69762168 . AC A 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,4:13,1 +chr4 72935056 . A C 0 PASS DP=50;GPV=1;SPV=0.011854;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,4:10,3 +chr4 73199221 . CTG C 0 PASS DP=43;GPV=1;SPV=0.0022326;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:7,9:6,5 +chr4 74778829 . G A 0 PASS DP=46;GPV=1;SPV=0.0089809;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,3:14,4 +chr4 74866501 . T TTG 0 PASS DP=31;GPV=1;SPV=0.0065359;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,10:1,5:2,5 +chr4 74876177 . C T 0 PASS DP=59;GPV=1;SPV=0.0051097;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:8,5:12,1 +chr4 75444380 . A C 0 PASS DP=63;GPV=1;SPV=0.012154;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,4:19,3 +chr4 76667972 . A C 0 PASS DP=29;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,2:3,1:3,1 +chr4 79035584 . G T 0 PASS DP=59;GPV=1;SPV=0.010612;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,2:7,3 +chr4 79919865 . TTA T 0 PASS DP=19;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:2,1:1,1 +chr4 80390934 . T C 0 PASS DP=46;GPV=1;SPV=0.040221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,3:13,3 +chr4 80390952 . CATGTAT C 0 PASS DP=37;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:3,3:4,4 +chr4 80725111 . AT A 0 PASS DP=28;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:3,3:6,1 +chr4 80847514 . G T 0 PASS DP=74;GPV=1;SPV=0.0023811;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:16,4:19,8 +chr4 81944595 . A T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:4,2:7,2 +chr4 84413977 . C T 0 PASS DP=62;GPV=1;SPV=7.9781e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:11,8:10,6 +chr4 84695509 . T TAG 0 PASS DP=27;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:1,3:1,1 +chr4 84909029 . T TAC 0 PASS DP=61;GPV=1;SPV=0.0044537;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:9,10:13,7 +chr4 85227114 . GAA G 0 PASS DP=26;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,8:1,1 +chr4 85839849 . T C 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,2:7,3 +chr4 86191591 . T C 0 PASS DP=21;GPV=1;SPV=0.0021672;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,11:1,2:1,9 +chr4 87354111 . C A 0 PASS DP=51;GPV=1;SPV=0.0002635;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,17:7,13:5,4 +chr4 87602062 . G C 0 PASS DP=62;GPV=1;SPV=0.00017769;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:13,8:9,5 +chr4 88325476 . A AACACACACACACACAC 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,4:3,3 +chr4 90548727 . G GAT 0 PASS DP=45;GPV=1;SPV=0.0065711;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,8:5,4 +chr4 92874787 . C G 0 PASS DP=64;GPV=1;SPV=0.01289;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,1:10,4 +chr4 93398129 . G GTGTGTGTGTGTGTA 0 PASS DP=36;GPV=1;SPV=0.0070449;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:4,4:6,6 +chr4 94516508 . GTCTCTC G 0 PASS DP=43;GPV=1;SPV=0.0042182;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:9,6:5,8 +chr4 94659494 . ATG A 0 PASS DP=38;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,10:2,7:2,3 +chr4 94686504 . TGA T 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,1:2,3 +chr4 95617505 . T C 0 PASS DP=67;GPV=1;SPV=0.033048;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:9,6:28,2 +chr4 96073939 . G A 0 PASS DP=85;GPV=1;SPV=0.00062529;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:16,6:19,5 +chr4 96169856 . TTA T 0 PASS DP=50;GPV=1;SPV=0.024399;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:4,4:14,3 +chr4 96173079 . C G 0 PASS DP=67;GPV=1;SPV=0.0010058;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:17,7:12,6 +chr4 96870642 . G A 0 PASS DP=49;GPV=1;SPV=0.0055489;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,10:7,3 +chr4 96871087 . A G 0 PASS DP=30;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,4:10,1 +chr4 97246408 . C T 0 PASS DP=29;GPV=1;SPV=0.002981;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:5,8:1,3 +chr4 97722964 . ATT A 0 PASS DP=40;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3 +chr4 97738044 . G A 0 PASS DP=68;GPV=1;SPV=0.0050026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:21,4:12,7 +chr4 98485803 . A G 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,4:2,4 +chr4 101958464 . CT C 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,5:4,3 +chr4 102539236 . C CA 0 PASS DP=30;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:5,4:2,2 +chr4 103577197 . CTCTT C 0 PASS DP=47;GPV=1;SPV=0.009884;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,1:16,7 +chr4 104085363 . A G 0 PASS DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,1:5,3 +chr4 104689672 . C T 0 PASS DP=46;GPV=1;SPV=0.016449;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:13,5:5,11 +chr4 106340393 . G T 0 PASS DP=76;GPV=1;SPV=0.010547;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:21,4:20,7 +chr4 106340394 . A G 0 PASS DP=77;GPV=1;SPV=0.0090402;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:23,4:18,7 +chr4 108099550 . GTGTGTA G 0 PASS DP=33;GPV=1;SPV=0.018146;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:5,4:8,3 +chr4 108099560 . G A 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,2:8,2 +chr4 108807819 . T C 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr4 109489638 . TA T 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,1:14,4 +chr4 109569497 . C CT 0 PASS DP=35;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:7,3:9,7 +chr4 109656379 . TTTTTTTTTTTTTTG T 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3 +chr4 109947819 . G T 0 PASS DP=80;GPV=1;SPV=0.00040854;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:9,5:22,6 +chr4 109968707 . T C 0 PASS DP=51;GPV=1;SPV=0.18558;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,3:16,1 +chr4 110127406 . C CAAA 0 PASS DP=40;GPV=1;SPV=0.01286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,10:13,9:2,1 +chr4 110621822 . A C 0 PASS DP=63;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:2,3:0,1:2,2 +chr4 111054977 . C T 0 PASS DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,2:16,3 +chr4 111718414 . T G 0 PASS DP=82;GPV=1;SPV=0.00058795;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:11,10:26,4 +chr4 111946369 . GA G 0 PASS DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,6:2,1 +chr4 112874080 . C CT 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,8:3,2 +chr4 113036251 . T TA 0 PASS DP=55;GPV=1;SPV=0.00035427;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:8,9:6,10 +chr4 113490926 . G T 0 PASS DP=42;GPV=1;SPV=0.045213;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,3:10,6 +chr4 114363005 . T A 0 PASS DP=74;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:39:0,2:0,1:0,1 +chr4 114722013 . C T 0 PASS DP=48;GPV=1;SPV=0.073064;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,4:13,3 +chr4 114914907 . C T 0 PASS DP=62;GPV=1;SPV=0.00097763;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:11,9:15,4 +chr4 117280895 . A G 0 PASS DP=42;GPV=1;SPV=0.11319;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,2:9,4 +chr4 118299794 . T TA 0 PASS DP=40;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,6:5,1 +chr4 118299812 . T A 0 PASS DP=40;GPV=1;SPV=0.014137;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:9,5:6,1 +chr4 118566690 . G A 0 PASS DP=70;GPV=1;SPV=0.14148;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:19,2:24,3 +chr4 119065816 . A G 0 PASS DP=88;GPV=1;SPV=0.029631;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:19,3:22,9 +chr4 119278889 . A G 0 PASS DP=33;GPV=1;SPV=0.024163;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,4:2,3 +chr4 119380045 . ATGTGTG A 0 PASS DP=60;GPV=1;SPV=0.0016056;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,6:7,12 +chr4 121241245 . GATATAT G 0 PASS DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:4,5:1,1 +chr4 122262148 . T TTGTGTGTG 0 PASS DP=41;GPV=1;SPV=0.0031331;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,17:2,10:5,7 +chr4 122659627 . C CT 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,8:4,1 +chr4 123101433 . G C 0 PASS DP=69;GPV=1;SPV=0.002347;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:19,3:12,8 +chr4 124860352 . G A 0 PASS DP=77;GPV=1;SPV=4.1153e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:27,25:12,13:15,12 +chr4 125873987 . C G 0 PASS DP=76;GPV=1;SPV=3.4736e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:7,4:20,11 +chr4 125977342 . GT G 0 PASS DP=29;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,2:5,2 +chr4 127022288 . G A 0 PASS DP=44;GPV=1;SPV=0.0039729;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,2:10,11 +chr4 127584099 . T G 0 PASS DP=71;GPV=1;SPV=0.097639;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:22,1:21,5 +chr4 128391550 . TTCTCAGCATC T 0 PASS DP=37;GPV=1;SPV=0.0013772;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,7:3,5 +chr4 129093245 . C G 0 PASS DP=91;GPV=1;SPV=0.0002415;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:42,17:21,7:21,10 +chr4 129508436 . G C 0 PASS DP=71;GPV=1;SPV=3.2196e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:10,11:15,5 +chr4 130548217 . G GA 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,2:6,2 +chr4 130999757 . CT C 0 PASS DP=30;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:7,2:5,3 +chr4 131382119 . G A 0 PASS DP=58;GPV=1;SPV=0.057437;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:14,4:17,2 +chr4 131601676 . CT C 0 PASS DP=38;GPV=1;SPV=0.0011236;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:10,8:2,7 +chr4 131739922 . G A 0 PASS DP=68;GPV=1;SPV=0.07595;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:18,6:23,1 +chr4 132254108 . G T 0 PASS DP=90;GPV=1;SPV=0.0011222;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:22,3:22,11 +chr4 133188665 . G GT 0 PASS DP=39;GPV=1;SPV=0.20626;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,2:9,3 +chr4 133465011 . G T 0 PASS DP=58;GPV=1;SPV=0.003755;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:8,7:18,4 +chr4 133709434 . CTT C 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,2:11,2 +chr4 134314408 . CAAAAAAAAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:4,6:2,1 +chr4 134476372 . CT C 0 PASS DP=53;GPV=1;SPV=0.0018803;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:8,6:6,3 +chr4 135175844 . C G 0 PASS DP=66;GPV=1;SPV=4.2369e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,21:16,12:8,9 +chr4 135338205 . T A 0 PASS DP=88;GPV=1;SPV=0.00090248;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:27,7:15,7 +chr4 135389840 . A T 0 PASS DP=55;GPV=1;SPV=0.0042224;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:16,8:9,4 +chr4 136581756 . C T 0 PASS DP=41;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:2,3:12,1 +chr4 137476829 . A T 0 PASS DP=56;GPV=1;SPV=0.00030915;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:9,5:12,11 +chr4 137988192 . G C 0 PASS DP=45;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,4:2,1:2,3 +chr4 138691868 . ATGTT A 0 PASS DP=39;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,4:1,1:5,3 +chr4 139294019 . G A 0 PASS DP=44;GPV=1;SPV=9.5813e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,22:2,12:7,10 +chr4 140482716 . T C 0 PASS DP=61;GPV=1;SPV=1.1051e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:14,10:5,10 +chr4 140509727 . G A 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:15,11:10,8 +chr4 141195113 . C T 0 PASS DP=64;GPV=1;SPV=0.0074013;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:21,8:10,2 +chr4 141365380 . G A 0 PASS DP=57;GPV=1;SPV=0.23136;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:26,3:10,1 +chr4 141367006 . A G 0 PASS DP=40;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,6:9,3:7,3 +chr4 141447702 . C T 0 PASS DP=69;GPV=1;SPV=0.085652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:22,2:16,3 +chr4 141531350 . ATTTT A 0 PASS DP=52;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,16:12,8:5,8 +chr4 142185400 . A G 0 PASS DP=49;GPV=1;SPV=0.26323;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:11,2:22,3 +chr4 142270933 . T TTG 0 PASS DP=60;GPV=1;SPV=0.00060741;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,21:12,11:6,10 +chr4 142658636 . C T 0 PASS DP=72;GPV=1;SPV=1.6244e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,25:14,12:12,13 +chr4 143691301 . G C 0 PASS DP=61;GPV=1;SPV=0.015768;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:13,3:18,6 +chr4 143792778 . GTTT G 0 PASS DP=33;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:13,5:0,4 +chr4 143884845 . T C 0 PASS DP=30;GPV=1;SPV=0.26692;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr4 144367898 . T A 0 PASS DP=65;GPV=1;SPV=0.063391;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,6:14,2:10,4 +chr4 144396265 . GACTTCAAACTATACTACAAGACTA G 0 PASS DP=85;GPV=1;SPV=0.014917;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:22,5:19,2 +chr4 145471093 . CATATAT C 0 PASS DP=23;GPV=1;SPV=0.27778;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,2:0,0 +chr4 145514483 . A G 0 PASS DP=74;GPV=1;SPV=0.043968;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,3:25,3 +chr4 145693666 . A AC 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,1:4,5 +chr4 146128392 . T A 0 PASS DP=64;GPV=1;SPV=0.016381;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:16,3:18,7 +chr4 147095728 . C CGT 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2 +chr4 147378325 . G T 0 PASS DP=63;GPV=1;SPV=2.4608e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:10,6:6,9 +chr4 149160054 . T C 0 PASS DP=72;GPV=1;SPV=0.03902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:19,3:18,3 +chr4 150112825 . G A 0 PASS DP=23;GPV=1;SPV=0.0005865;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:2,11:0,4:2,7 +chr4 151435784 . CAAA C 0 PASS DP=46;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:11,4:4,6 +chr4 152377598 . C CA 0 PASS DP=38;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,11:7,2 +chr4 152804089 . C CAT 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,2:6,3 +chr4 153203103 . CAAAAAAAAA C 0 PASS DP=43;GPV=1;SPV=0.0050173;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,15:10,7:3,8 +chr4 153387688 . C A 0 PASS DP=82;GPV=1;SPV=0.040545;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:20,1:26,6 +chr4 153470210 . CTGCAAAGTCTGGGGAATTATGG C 0 PASS DP=66;GPV=1;SPV=0.030384;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:16,4:16,2 +chr4 153480517 . C CA 0 PASS DP=33;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:11,3:7,1 +chr4 154284194 . T G 0 PASS DP=70;GPV=1;SPV=0.00025351;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:12,9:15,4 +chr4 154690631 . C T 0 PASS DP=62;GPV=1;SPV=0.026404;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,5:16,1 +chr4 157780889 . G C 0 PASS DP=59;GPV=1;SPV=0.11642;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:21,3:15,3 +chr4 158105035 . G A 0 PASS DP=44;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,5:3,3:5,2 +chr4 158435477 . T C 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3 +chr4 159072451 . CTT C 0 PASS DP=26;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1 +chr4 160299963 . T G 0 PASS DP=77;GPV=1;SPV=0.026663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:22,5:23,5 +chr4 160619682 . C T 0 PASS DP=63;GPV=1;SPV=0.0087719;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,7:16,3 +chr4 161036076 . TTTC T 0 PASS DP=51;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,3:2,1:1,2 +chr4 162279281 . T A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:12,1:22,3 +chr4 162453398 . A ATATATATGC 0 PASS DP=84;GPV=1;SPV=0.049459;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:23,2:9,5 +chr4 162571965 . A G 0 PASS DP=78;GPV=1;SPV=0.00019467;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:10,8:23,8 +chr4 162594584 . A T 0 PASS DP=54;GPV=1;SPV=0.54715;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,4:4,3:12,1 +chr4 163238160 . T C 0 PASS DP=81;GPV=1;SPV=0.00040665;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:10,8:23,4 +chr4 163894907 . A ACACG 0 PASS DP=45;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,2:0,2:0,0 +chr4 165238781 . A G 0 PASS DP=77;GPV=1;SPV=0.061837;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:22,1:18,4 +chr4 165481016 . AT A 0 PASS DP=45;GPV=1;SPV=0.0014462;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,17:6,8:5,9 +chr4 168113386 . G T 0 PASS DP=56;GPV=1;SPV=0.16157;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:24,5:12,1 +chr4 168165391 . A C 0 PASS DP=54;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:1,2:1,2:0,0 +chr4 168520347 . A G 0 PASS DP=44;GPV=1;SPV=0.043687;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:9,3:10,11 +chr4 168680481 . CA C 0 PASS DP=36;GPV=1;SPV=0.028934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:13,8:3,1 +chr4 168704664 . CA C 0 PASS DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,5:4,3 +chr4 168878682 . T TTG 0 PASS DP=27;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,5:2,3 +chr4 169016051 . ATCTCTCTCTC A 0 PASS DP=35;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:1,4:8,4 +chr4 169283846 . T A 0 PASS DP=63;GPV=1;SPV=0.011513;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:13,7:19,3 +chr4 169337332 . G T 0 PASS DP=75;GPV=1;SPV=4.7151e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,24:14,9:12,15 +chr4 169922477 . C CT 0 PASS DP=75;GPV=1;SPV=0.067671;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1 +chr4 170573022 . A G 0 PASS DP=59;GPV=1;SPV=0.10277;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,5:6,1:5,4 +chr4 171410940 . G A 0 PASS DP=46;GPV=1;SPV=0.0076774;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,14:3,9:12,5 +chr4 171423511 . G T 0 PASS DP=71;GPV=1;SPV=0.0057828;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:16,1:15,7 +chr4 172085080 . A AATACAT 0 PASS DP=73;GPV=1;SPV=8.8502e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:10,12:15,7 +chr4 172487367 . C CTTCTT 0 PASS DP=39;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,5:2,3:11,2 +chr4 172887682 . G C 0 PASS DP=85;GPV=1;SPV=4.7666e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,24:14,11:14,13 +chr4 173022078 . G A 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3 +chr4 173074876 . AG A 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,2:19,2 +chr4 173799232 . CTCTCTTTCTT C 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,2:7,3 +chr4 174007990 . G T 0 PASS DP=88;GPV=1;SPV=8.4559e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:34,21:21,10:13,11 +chr4 174544193 . G GAAGAAAGAAAGAAAGA 0 PASS DP=48;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,1:6,3 +chr4 174788590 . T TAA 0 PASS DP=35;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,11:5,8:3,3 +chr4 175564011 . T A 0 PASS DP=75;GPV=1;SPV=1.2509e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,24:13,15:11,9 +chr4 177349034 . A ATT 0 PASS DP=32;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,11:2,8:2,3 +chr4 178395316 . A AAT 0 PASS DP=38;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:9,7:8,1 +chr4 178395352 . A T 0 PASS DP=40;GPV=1;SPV=0.00048402;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:6,6:6,10 +chr4 178691496 . CA C 0 PASS DP=39;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:11,7:3,2 +chr4 179037015 . ATTGTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,1:5,3 +chr4 179924448 . C T 0 PASS DP=90;GPV=1;SPV=1.7081e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:26,26:17,15:9,11 +chr4 180257232 . T C 0 PASS DP=73;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,3:16,4 +chr4 180278694 . G GA 0 PASS DP=39;GPV=1;SPV=0.0013083;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,16:9,16:1,0 +chr4 180401541 . G T 0 PASS DP=34;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:3,1:6,4 +chr4 180639435 . C A 0 PASS DP=76;GPV=1;SPV=0.035616;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2 +chr4 180721638 . G A 0 PASS DP=43;GPV=1;SPV=0.014917;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,4:8,3 +chr4 181641760 . A G 0 PASS DP=22;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:3,10:1,8:2,2 +chr4 181746053 . G A 0 PASS DP=64;GPV=1;SPV=2.0181e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:8,7:4,7 +chr4 182100646 . T TATACAC 0 PASS DP=52;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:12,5:8,5 +chr4 183487423 . CAAAAAAAAAAAAAAAAAAAAAGAA C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr4 184132818 . TACAC T 0 PASS DP=66;GPV=1;SPV=0.1268;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,2:17,2 +chr4 184372964 . T TTA 0 PASS DP=32;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,1:6,6 +chr4 184430283 . TGTCTGGCCCAGCCTTTTCCTTGTATGCCTCCTGCA T 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,2:8,3 +chr4 184480460 . A C 0 PASS DP=54;GPV=1;SPV=0.055176;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,8:13,6:17,2 +chr4 184546648 . CT C 0 PASS DP=32;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1 +chr4 185124123 . T TTGTGTGTG 0 PASS DP=68;GPV=1;SPV=0.0056141;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,18:9,9:16,9 +chr4 185157455 . CA C 0 PASS DP=38;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:5,9:9,2 +chr4 185433419 . G A 0 PASS DP=51;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,5:10,2:7,3 +chr4 185487365 . GC G 0 PASS DP=58;GPV=1;SPV=0.00044052;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:9,9:10,12 +chr4 185536811 . G GTTTT 0 PASS DP=41;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,7:7,5:3,2 +chr4 185796509 . G T 0 PASS DP=56;GPV=1;SPV=0.19619;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:12,4:24,1 +chr4 185926555 . G T 0 PASS DP=74;GPV=1;SPV=0.056428;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:21,6:11,2:10,4 +chr4 186466671 . T A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:20,3:15,1 +chr4 187906580 . C CAA 0 PASS DP=38;GPV=1;SPV=0.028014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:14,7:3,1 +chr4 188023604 . C T 0 PASS DP=41;GPV=1;SPV=0.030216;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr4 188325903 . G A 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,1:15,4 +chr4 188411557 . TGA T 0 PASS DP=41;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:16,3:5,1 +chr4 188604588 . AGAT A 0 PASS DP=58;GPV=1;SPV=0.0073681;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,6:10,9 +chr4 189578190 . A T 0 PASS DP=69;GPV=1;SPV=0.0022098;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:13,9:20,5 +chr4 189686266 . A G 0 PASS DP=33;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,4:11,1 +chr5 302652 . A G 0 PASS DP=37;GPV=1;SPV=0.00072987;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:10,7:1,5 +chr5 426881 . G A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr5 434455 . TGAAAACAGAGCCAGACTCTC T 0 PASS DP=83;GPV=1;SPV=0.0005395;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:15,6:20,6 +chr5 434478 . C T 0 PASS DP=90;GPV=1;SPV=0.00075349;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:17,6:23,6 +chr5 484383 . G A 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:1,1:5,4 +chr5 658645 . ATTTTTTTTTTTTTTTTTTT A 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,4:2,1 +chr5 1061521 . C T 0 PASS DP=47;GPV=1;SPV=0.027042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,4:7,2 +chr5 1379965 . A C 0 PASS DP=41;GPV=1;SPV=0.0053746;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,5:6,5 +chr5 1867380 . T TG 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0 +chr5 3492742 . C T 0 PASS DP=57;GPV=1;SPV=0.0058302;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,3:11,6 +chr5 3761401 . T C 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr5 4095577 . T TTC 0 PASS DP=36;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,1:7,5 +chr5 4095578 . C T 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:2,1:8,5 +chr5 5385200 . C G 0 PASS DP=75;GPV=1;SPV=1.9475e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:11,10:15,6 +chr5 5725921 . C T 0 PASS DP=61;GPV=1;SPV=0.00033318;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,7:10,3 +chr5 6185027 . C CT 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,3:4,2 +chr5 6367923 . TGA T 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr5 6816160 . C CTT 0 PASS DP=28;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:2,4:2,1 +chr5 7143259 . G GTGTGTATATATA 0 PASS DP=41;GPV=1;SPV=0.13115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2 +chr5 7589498 . G GAA 0 PASS DP=35;GPV=1;SPV=0.20553;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:11,4:1,0 +chr5 8720398 . C CA 0 PASS DP=26;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:9,4:1,0 +chr5 8746665 . A T 0 PASS DP=55;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:3,1:1,1 +chr5 8972532 . T G 0 PASS DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:16,5:10,2 +chr5 9593951 . G GTATATATATATATATATATA 0 PASS DP=23;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:2,5:2,1 +chr5 9929839 . A T 0 PASS DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:14,4:13,6 +chr5 9953576 . C CATATATATATAT 0 PASS DP=34;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,11:1,8:4,3 +chr5 10418381 . C CA 0 PASS DP=46;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,7:12,5:2,2 +chr5 10638985 . G A 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr5 11771192 . C CTTTTTT 0 PASS DP=29;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:6,9:3,2 +chr5 11776456 . G A 0 PASS DP=49;GPV=1;SPV=0.00039776;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,5:7,4 +chr5 11864540 . G C 0 PASS DP=56;GPV=1;SPV=0.0070909;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,4:7,2 +chr5 13798739 . A T 0 PASS DP=56;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:9,4:9,5 +chr5 14812120 . A T 0 PASS DP=48;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,2:4,1:1,1 +chr5 15309583 . GAA G 0 PASS DP=41;GPV=1;SPV=0.15847;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:20,1:4,4 +chr5 15715489 . C CA 0 PASS DP=40;GPV=1;SPV=0.0028043;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:9,11:2,1 +chr5 16662316 . A T 0 PASS DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:2,2:1,3 +chr5 17965702 . CATATATATATAT C 0 PASS DP=25;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,4:1,1 +chr5 18046470 . TTA T 0 PASS DP=45;GPV=1;SPV=0.10919;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,1:11,7 +chr5 18444169 . CATGTATATATACACACATACACATAT C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:4,1:16,3 +chr5 19177693 . T TAAAA 0 PASS DP=27;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,10:3,4:2,6 +chr5 19392403 . G A 0 PASS DP=55;GPV=1;SPV=2.5801e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:6,5:9,8 +chr5 19917432 . T A 0 PASS DP=48;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2 +chr5 20617230 . G GAA 0 PASS DP=30;GPV=1;SPV=0.0087567;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:5,5:1,3 +chr5 20755141 . C T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1 +chr5 20757924 . C A 0 PASS DP=79;GPV=1;SPV=0.030818;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:15,3:18,4 +chr5 20865871 . A G 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,3:10,2 +chr5 21211538 . T G 0 PASS DP=71;GPV=1;SPV=0.0136;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:12,2:18,4 +chr5 22999419 . C A 0 PASS DP=48;GPV=1;SPV=0.0020064;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,6:10,4 +chr5 23118340 . A T 0 PASS DP=47;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:4,2:5,4 +chr5 23671914 . ATT A 0 PASS DP=27;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:6,1:7,3 +chr5 23988366 . A ATTCT 0 PASS DP=41;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:6,3:13,1 +chr5 24459502 . A C 0 PASS DP=63;GPV=1;SPV=0.008739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:9,2:15,4 +chr5 24465506 . A G 0 PASS DP=78;GPV=1;SPV=2.2669e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:17,7:9,7 +chr5 24560220 . G A 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1 +chr5 24626897 . T TAA 0 PASS DP=50;GPV=1;SPV=0.17768;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,3:18,1 +chr5 24929831 . C T 0 PASS DP=63;GPV=1;SPV=0.0036796;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:7,4:16,3 +chr5 26090026 . C A 0 PASS DP=67;GPV=1;SPV=0.0001506;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,8:10,3 +chr5 26479675 . C G 0 PASS DP=68;GPV=1;SPV=0.081606;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:25,2:12,3 +chr5 26564815 . C G 0 PASS DP=44;GPV=1;SPV=0.0018443;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,3:10,6 +chr5 28107717 . TTATATATA T 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1 +chr5 28581865 . T A 0 PASS DP=72;GPV=1;SPV=0.0019152;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,3:12,6 +chr5 28818454 . A AG 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,2:4,2 +chr5 28929068 . A T 0 PASS DP=45;GPV=1;SPV=0.00014246;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,5:9,8 +chr5 28975244 . T A 0 PASS DP=61;GPV=1;SPV=0.00024975;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:12,4:4,4 +chr5 29032844 . G T 0 PASS DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:17,5:12,1 +chr5 29403167 . C A 0 PASS DP=69;GPV=1;SPV=9.4662e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:10,4:13,8 +chr5 29837121 . T TCTCTCTCTCTTTC 0 PASS DP=19;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,0:0,2 +chr5 29927548 . AGTGTGTGT A 0 PASS DP=46;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,14:7,9:4,5 +chr5 30353234 . C T 0 PASS DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:12,2:13,3 +chr5 30490627 . G T 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2 +chr5 31293367 . A T 0 PASS DP=59;GPV=1;SPV=0.12943;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,3:16,1 +chr5 31578439 . G A 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr5 31776626 . T TTTTATTTA 0 PASS DP=52;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:8,5:11,5 +chr5 33123422 . T C 0 PASS DP=34;GPV=1;SPV=0.0045179;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,8:5,3 +chr5 34251894 . A C 0 PASS DP=32;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,3:1,1:0,2 +chr5 36171226 . C G 0 PASS DP=72;GPV=1;SPV=0.0037034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:18,7:18,6 +chr5 36322184 . T TAAAA 0 PASS DP=32;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,5:4,1 +chr5 37373706 . A T 0 PASS DP=29;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:4,1:1,1 +chr5 37874339 . A T 0 PASS DP=49;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:11,1:7,3 +chr5 37964914 . G A 0 PASS DP=67;GPV=1;SPV=0.0022018;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,4:15,5 +chr5 39619776 . TTTC T 0 PASS DP=45;GPV=1;SPV=0.21118;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,3:16,1 +chr5 39967650 . CTTTTT C 0 PASS DP=27;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1 +chr5 40018312 . GTGGGACCTTTGGGACCAGATAGTAGAACAT G 0 PASS DP=53;GPV=1;SPV=0.013486;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,6:12,6 +chr5 40968559 . ATATATATTT A 0 PASS DP=21;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:3,1:1,1 +chr5 42962772 . T TGAGAGAGAGAGAGA 0 PASS DP=41;GPV=1;SPV=0.14971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:11,3:14,4 +chr5 43273910 . GTGTTTATCTTTT G 0 PASS DP=69;GPV=1;SPV=0.00046879;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:12,5:14,6 +chr5 44196047 . G GA 0 PASS DP=27;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:4,6:1,3 +chr5 44377438 . C T 0 PASS DP=66;GPV=1;SPV=0.00021022;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,6:9,4 +chr5 44852745 . C CAA 0 PASS DP=33;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,7:5,1 +chr5 45031943 . CTTTGTAAT C 0 PASS DP=57;GPV=1;SPV=0.02029;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,4:16,2 +chr5 46366052 . G A 0 PASS DP=62;GPV=1;SPV=0.0080354;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:13,7:16,2 +chr5 46648697 . A T 0 PASS DP=58;GPV=1;SPV=0.19386;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:25,1:10,3 +chr5 46708068 . T G 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr5 47074114 . A C 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr5 47100917 . T A 0 PASS DP=72;GPV=1;SPV=8.135e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:17,7:11,10 +chr5 47129394 . A G 0 PASS DP=124;GPV=1;SPV=0.042795;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:11,1:55,8 +chr5 47130262 . A T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,2:9,2 +chr5 47136617 . A G 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4 +chr5 47296981 . A T 0 PASS DP=83;GPV=1;SPV=0.027952;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:1,1:32,11 +chr5 49622546 . A G 0 PASS DP=290;GPV=1;SPV=0.04415;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:127,24:50,18:77,6 +chr5 49666505 . A G 0 PASS DP=514;GPV=1;SPV=0.033824;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:231,38:138,19:93,19 +chr5 50114336 . A G 0 PASS DP=55;GPV=1;SPV=0.079987;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:28,4:1,1 +chr5 50114341 . T C 0 PASS DP=52;GPV=1;SPV=0.045693;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:24,4:0,1 +chr5 50137140 . G C 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,2:9,2 +chr5 50140793 . A T 0 PASS DP=80;GPV=1;SPV=0.017008;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:28,4:7,5 +chr5 51400213 . C T 0 PASS DP=47;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:2,1:7,3 +chr5 51414171 . A T 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:16,1:10,5 +chr5 52872566 . C T 0 PASS DP=36;GPV=1;SPV=0.038306;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,4:10,2 +chr5 53458614 . G T 0 PASS DP=51;GPV=1;SPV=0.0048811;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,2:7,6 +chr5 54474179 . T TTCTG 0 PASS DP=47;GPV=1;SPV=0.0012329;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,4:11,7 +chr5 56115212 . AAT A 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2 +chr5 58870530 . A C 0 PASS DP=65;GPV=1;SPV=0.0050994;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,7:15,2 +chr5 59795974 . G A 0 PASS DP=74;GPV=1;SPV=0.00012605;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:13,7:16,8 +chr5 60613826 . G A 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,2:14,3 +chr5 62224050 . AGAGTGTGTGT A 0 PASS DP=25;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr5 62248035 . C T 0 PASS DP=67;GPV=1;SPV=0.045245;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,2:12,6 +chr5 62441496 . CTTTTTTTTTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,7:5,4 +chr5 62533215 . C T 0 PASS DP=49;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,4:6,3:9,1 +chr5 64862369 . A AAAAC 0 PASS DP=55;GPV=1;SPV=0.00051119;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:5,14:10,4 +chr5 65271376 . TA T 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:3,7:5,3 +chr5 65898796 . TTTCTC T 0 PASS DP=48;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,1:10,8 +chr5 67116208 . GT G 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,1:8,4 +chr5 67958371 . AACACACACACACAC A 0 PASS DP=28;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1 +chr5 68303425 . C CA 0 PASS DP=39;GPV=1;SPV=0.0013501;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:9,7:2,2 +chr5 69164026 . AATAT A 0 PASS DP=26;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,2:3,3 +chr5 70219857 . G A 0 PASS DP=563;GPV=1;SPV=0.019992;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:305:273,32:178,21:95,11 +chr5 70427617 . A G 0 PASS DP=34;GPV=1;SPV=0.12093;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,3:7,2 +chr5 74925221 . TG T 0 PASS DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:10,5:4,7 +chr5 77816249 . G GA 0 PASS DP=29;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1 +chr5 78279850 . A AATAT 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1 +chr5 78279867 . AAT A 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1 +chr5 80035844 . T C 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr5 80505749 . A ATT 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:2,2:5,2 +chr5 81116837 . G T 0 PASS DP=64;GPV=1;SPV=0.0045171;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,4:15,5 +chr5 81737787 . C CA 0 PASS DP=43;GPV=1;SPV=0.052666;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:17,4:4,3 +chr5 82370810 . G A 0 PASS DP=57;GPV=1;SPV=0.1672;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,2:11,2 +chr5 84864162 . AT A 0 PASS DP=67;GPV=1;SPV=0.04073;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,7:9,3:13,4 +chr5 85131821 . G A 0 PASS DP=71;GPV=1;SPV=0.00089348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:14,8:17,5 +chr5 85358431 . T C 0 PASS DP=41;GPV=1;SPV=0.015895;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,6:8,5 +chr5 85677331 . A G 0 PASS DP=42;GPV=1;SPV=0.00034555;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:9,21:3,10:6,11 +chr5 88191956 . CA C 0 PASS DP=20;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr5 89120537 . C T 0 PASS DP=51;GPV=1;SPV=0.01328;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:10,9:11,7 +chr5 89311458 . A AAT 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr5 92880197 . C A 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:13,6:17,4 +chr5 94564384 . T TTGTG 0 PASS DP=31;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,4:5,4 +chr5 96313865 . A G 0 PASS DP=76;GPV=1;SPV=0.017586;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:14,6:27,3 +chr5 97657022 . C A 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr5 99522765 . C G 0 PASS DP=120;GPV=1;SPV=0.041137;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:16,4:32,7 +chr5 100066701 . T A 0 PASS DP=46;GPV=1;SPV=0.018907;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,2:7,4 +chr5 100493719 . T C 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,7:2,4 +chr5 100593974 . A ATATC 0 PASS DP=35;GPV=1;SPV=0.098039;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:2,1:2,1 +chr5 105296226 . G A 0 PASS DP=30;GPV=1;SPV=0.0090312;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr5 105610844 . A C 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:8,7:13,5 +chr5 106604048 . A AAAATATAT 0 PASS DP=45;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,15:5,11:2,4 +chr5 106755918 . A C 0 PASS DP=52;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,2:5,1:1,1 +chr5 108772333 . C T 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,2:11,2 +chr5 108819179 . C CT 0 PASS DP=28;GPV=1;SPV=0.023188;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2 +chr5 110770611 . A G 0 PASS DP=76;GPV=1;SPV=8.0653e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,25:10,11:14,14 +chr5 111991173 . C G 0 PASS DP=73;GPV=1;SPV=0.00013948;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,7:13,6 +chr5 112527856 . G A 0 PASS DP=74;GPV=1;SPV=0.00028322;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:18,6:14,11 +chr5 112818834 . G T 0 PASS DP=41;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,4:9,2:4,2 +chr5 113653297 . A G 0 PASS DP=49;GPV=1;SPV=0.1866;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:11,7:7,5:4,2 +chr5 114664322 . C CA 0 PASS DP=35;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,6:4,5:4,1 +chr5 115547919 . A ATATGTGTGTGTG 0 PASS DP=26;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:4,2:2,2 +chr5 116333491 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:6,5:2,2 +chr5 116879726 . A C 0 PASS DP=52;GPV=1;SPV=0.037129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,1:5,8 +chr5 117190472 . T TAGAGAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=38;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:12,1:8,3 +chr5 117284179 . T G 0 PASS DP=27;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3 +chr5 117689652 . G T 0 PASS DP=71;GPV=1;SPV=0.067973;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:26,3:7,1 +chr5 121657690 . T C 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr5 122513085 . A G 0 PASS DP=37;GPV=1;SPV=0.04669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,5:10,2 +chr5 122544822 . AAAAAAAAATATAT A 0 PASS DP=30;GPV=1;SPV=0.0017499;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,8:3,4:2,4 +chr5 123023807 . A AACACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.039556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:9,3:9,2 +chr5 123559703 . T G 0 PASS DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,1:0,1 +chr5 124029932 . A AACACAC 0 PASS DP=60;GPV=1;SPV=0.0014872;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,14:16,10:9,4 +chr5 124764014 . CTT C 0 PASS DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,4:0,3 +chr5 124935723 . C CA 0 PASS DP=35;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,7:6,2 +chr5 126576262 . C CA 0 PASS DP=41;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:3,5:3,1 +chr5 126800951 . CTA C 0 PASS DP=25;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,3:1,1 +chr5 126800956 . T C 0 PASS DP=27;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,2:3,2 +chr5 127110306 . G A 0 PASS DP=68;GPV=1;SPV=0.0010933;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,3:15,8 +chr5 127614711 . C T 0 PASS DP=24;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,4:3,2 +chr5 127676757 . G T 0 PASS DP=62;GPV=1;SPV=0.00049368;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:12,7:8,2 +chr5 127974670 . AT A 0 PASS DP=42;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,13:6,6:9,7 +chr5 128759156 . A G 0 PASS DP=52;GPV=1;SPV=0.0040779;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,6:10,4 +chr5 129389321 . TGTC T 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2 +chr5 131005742 . T C 0 PASS DP=59;GPV=1;SPV=0.034681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:15,5:17,3 +chr5 131240280 . G T 0 PASS DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,3:10,6 +chr5 131466384 . A C 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3 +chr5 132433778 . CT C 0 PASS DP=33;GPV=1;SPV=0.057386;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,6:7,1 +chr5 132482663 . GT G 0 PASS DP=24;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,10:4,8:1,2 +chr5 132726572 . C A 0 PASS DP=51;GPV=1;SPV=7.8617e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,4:7,9 +chr5 132881827 . G A 0 PASS DP=43;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,4:9,1:0,3 +chr5 132889001 . T C 0 PASS DP=64;GPV=1;SPV=0.0031368;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3 +chr5 133588185 . G C 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,1:10,3 +chr5 135812312 . A C 0 PASS DP=71;GPV=1;SPV=0.014019;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,2:21,5 +chr5 138777250 . T C 0 PASS DP=69;GPV=1;SPV=0.032019;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:9,4:25,2 +chr5 139155448 . T TGAGAGAGAGAGAGAGAGAGAGAGAGA 0 PASS DP=39;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:7,2:12,2 +chr5 139180058 . T TAA 0 PASS DP=38;GPV=1;SPV=0.014514;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:4,3:8,6 +chr5 139381614 . CA C 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,6:5,1 +chr5 144179804 . A G 0 PASS DP=58;GPV=1;SPV=0.00031474;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,9:11,6 +chr5 145219813 . T C 0 PASS DP=62;GPV=1;SPV=0.00034047;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,2:7,7 +chr5 145964307 . T C 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr5 146560118 . T C 0 PASS DP=34;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,2:4,1:2,1 +chr5 146679477 . G C 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:1,0:14,4 +chr5 147717784 . G A 0 PASS DP=50;GPV=1;SPV=0.0024544;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,5:9,2 +chr5 148068578 . A G 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:8,3:2,1 +chr5 148091756 . C T 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,2:5,3 +chr5 148476969 . G A 0 PASS DP=65;GPV=1;SPV=0.0035514;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:15,4:14,6 +chr5 148615692 . TAAAG T 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr5 149956178 . A C 0 PASS DP=56;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:1,2:0,1:1,1 +chr5 151788570 . A ATGTG 0 PASS DP=35;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:9,2:4,4 +chr5 153243557 . CA C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr5 153577078 . A ATGGATGGATGGG 0 PASS DP=29;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,4:3,1 +chr5 153577162 . A T 0 PASS DP=24;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,2:3,1:3,1 +chr5 154586572 . G GA 0 PASS DP=30;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:8,4:2,1 +chr5 154646237 . GT G 0 PASS DP=31;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,4:4,2 +chr5 155487913 . A T 0 PASS DP=53;GPV=1;SPV=0.0001844;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,7:3,2 +chr5 155796806 . C CA 0 PASS DP=26;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:6,3:5,1 +chr5 156416076 . A T 0 PASS DP=53;GPV=1;SPV=0.0017626;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,4:9,4 +chr5 156957512 . C CAAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:7,3:6,1 +chr5 156981148 . CTCTTTCTTTCTT C 0 PASS DP=43;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:1,5:5,5 +chr5 157280363 . A ATTTTTTT 0 PASS DP=36;GPV=1;SPV=0.0024977;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5 +chr5 158163405 . T G 0 PASS DP=26;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:2,1:0,1 +chr5 160202798 . CA C 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,6:7,2 +chr5 160236016 . G GT 0 PASS DP=31;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,6:2,1 +chr5 161571650 . CATAT C 0 PASS DP=27;GPV=1;SPV=0.18462;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:1,5:5,1 +chr5 161839895 . C CTCTTTCTTTCTTTCTT 0 PASS DP=19;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:1,1:1,3 +chr5 162242657 . GAT G 0 PASS DP=42;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:5,3:4,3 +chr5 162978186 . A AACACACACACACAC 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,6:3,2 +chr5 163001832 . T TA 0 PASS DP=30;GPV=1;SPV=0.0025641;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,3:2,2 +chr5 163226988 . C T 0 PASS DP=36;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,3:0,0:4,3 +chr5 163610852 . G C 0 PASS DP=47;GPV=1;SPV=0.0012326;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,5:5,2 +chr5 164402989 . G A 0 PASS DP=25;GPV=1;SPV=0.00037022;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:0,8:0,3:0,5 +chr5 166523934 . C A 0 PASS DP=43;GPV=1;SPV=0.00016765;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,2:5,6 +chr5 167288558 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,3:6,1 +chr5 170243365 . A G 0 PASS DP=33;GPV=1;SPV=0.0015313;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,6:3,2 +chr5 172286885 . T TA 0 PASS DP=30;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,4:3,2 +chr5 173106732 . C CTATTT 0 PASS DP=47;GPV=1;SPV=0.0014808;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:3,6:10,5 +chr5 173221743 . A ATG 0 PASS DP=38;GPV=1;SPV=0.0021778;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,8:4,5:1,3 +chr5 173338133 . GTATATATATATA G 0 PASS DP=28;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:6,6:2,3 +chr5 173699017 . A ACGCGCGCG 0 PASS DP=32;GPV=1;SPV=0.0038904;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:5,4:1,1 +chr5 173872574 . A C 0 PASS DP=28;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:5,3:1,1 +chr5 174689912 . C A 0 PASS DP=21;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,1:0,1 +chr5 175122973 . A T 0 PASS DP=33;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:3,1:4,1 +chr5 175930222 . T C 0 PASS DP=87;GPV=1;SPV=0.012785;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,5:13,5 +chr5 175952831 . T G 0 PASS DP=33;GPV=1;SPV=0.0072303;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,1:2,5 +chr5 175961219 . A C 0 PASS DP=28;GPV=1;SPV=0.0034188;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1 +chr5 176000359 . T C 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,6:8,1 +chr5 176576579 . CT C 0 PASS DP=28;GPV=1;SPV=0.0017828;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,9:2,2 +chr5 177048787 . C CTT 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr5 177644622 . A G 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,3:4,2 +chr5 177645886 . C CG 0 PASS DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1 +chr5 177812290 . A G 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr5 177871804 . CTTTT C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr5 178002236 . T C 0 PASS DP=23;GPV=1;SPV=0.0069323;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:2,4:2,4 +chr5 179384589 . C A 0 PASS DP=44;GPV=1;SPV=0.00042646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,5:7,3 +chr5 180954948 . C T 0 PASS DP=41;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:0,2:9,2 +chr5 181306616 . C T 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,3:5,2 +chr6 371529 . CAGG C 0 PASS DP=50;GPV=1;SPV=0.091614;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,4:9,3:13,1 +chr6 851213 . C CAA 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1 +chr6 911480 . TCTACAGACAGGTGAGGGGCCCC T 0 PASS DP=66;GPV=1;SPV=0.00040386;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:12,8:8,9 +chr6 3181862 . A T 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,2:9,2 +chr6 4258452 . C T 0 PASS DP=42;GPV=1;SPV=0.20263;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,5:13,1:8,4 +chr6 4674905 . G A 0 PASS DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:11,3:6,7 +chr6 5444493 . AGAG A 0 PASS DP=26;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:1,1:1,3 +chr6 7450593 . CTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr6 8044283 . C CAA 0 PASS DP=24;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,8:1,6:4,2 +chr6 8628542 . C T 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:2,3:5,4 +chr6 8628547 . TTC T 0 PASS DP=33;GPV=1;SPV=0.0026779;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,3:7,4 +chr6 8978319 . C T 0 PASS DP=17;GPV=1;SPV=0.020362;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,1:2,4 +chr6 9516350 . A C 0 PASS DP=67;GPV=1;SPV=0.0049562;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:16,5:14,4 +chr6 9752208 . A G 0 PASS DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,7:5,5 +chr6 10563774 . A T 0 PASS DP=38;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,2:4,1:1,1 +chr6 11052766 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr6 11083103 . C CTTTTTT 0 PASS DP=47;GPV=1;SPV=0.042541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:10,4:9,4 +chr6 11319730 . ACT A 0 PASS DP=43;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:10,2:3,2 +chr6 11319742 . A ACT 0 PASS DP=35;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:7,2:3,3 +chr6 11636065 . CA C 0 PASS DP=26;GPV=1;SPV=0.0027473;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,11:0,8:0,3 +chr6 11700420 . A AATATATATAT 0 PASS DP=18;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:2,2:1,2 +chr6 11855203 . T TTGTGTG 0 PASS DP=36;GPV=1;SPV=0.015843;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,1:3,5 +chr6 12065694 . T C 0 PASS DP=66;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,6:14,2:22,4 +chr6 12753779 . A T 0 PASS DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,2:9,4 +chr6 14031306 . TAACACACA T 0 PASS DP=42;GPV=1;SPV=0.0080824;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,6:6,5 +chr6 14163457 . CT C 0 PASS DP=36;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,8:5,5:3,3 +chr6 14353495 . G T 0 PASS DP=72;GPV=1;SPV=6.4422e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:15,12:12,4 +chr6 14382908 . T TCTTC 0 PASS DP=50;GPV=1;SPV=0.16171;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:15,3:12,1 +chr6 15094541 . A AC 0 PASS DP=31;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:6,2:5,5 +chr6 15220872 . CGGGGGAGAGGAAAT C 0 PASS DP=44;GPV=1;SPV=0.010097;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,9:9,3 +chr6 15620983 . T G 0 PASS DP=73;GPV=1;SPV=0.00060146;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,6:13,6 +chr6 16121816 . G C 0 PASS DP=64;GPV=1;SPV=0.0011498;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:18,5:8,6 +chr6 16289848 . ATTTTTTTTTTT A 0 PASS DP=21;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:2,1:3,3 +chr6 17020444 . G A 0 PASS DP=31;GPV=1;SPV=0.0024472;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,3:2,4 +chr6 20310118 . A T 0 PASS DP=60;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:10,4:7,3:3,1 +chr6 20992037 . T C 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr6 21635083 . G T 0 PASS DP=36;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:9,3:8,2 +chr6 22077805 . T TTAA 0 PASS DP=51;GPV=1;SPV=0.0070729;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:9,13:4,10:5,3 +chr6 22481638 . A G 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2 +chr6 22868282 . CAA C 0 PASS DP=30;GPV=1;SPV=0.0021831;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,7:1,1 +chr6 23276844 . C A 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3 +chr6 23827822 . C A 0 PASS DP=56;GPV=1;SPV=0.0025987;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,11:12,3 +chr6 24378956 . G GA 0 PASS DP=20;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:5,4:0,0 +chr6 24389373 . A C 0 PASS DP=36;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,2:0,1:1,1 +chr6 26042796 . A ATT 0 PASS DP=35;GPV=1;SPV=0.13093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,1:12,4 +chr6 27045173 . G A 0 PASS DP=88;GPV=1;SPV=0.001551;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,5:17,4 +chr6 27221394 . T G 0 PASS DP=62;GPV=1;SPV=0.093861;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr6 27803526 . TCACACA T 0 PASS DP=37;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:9,3:1,5 +chr6 28080543 . A AT 0 PASS DP=31;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,4:6,1 +chr6 28891642 . C T 0 PASS DP=48;GPV=1;SPV=0.021198;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,4:9,3 +chr6 29187357 . T C 0 PASS DP=68;GPV=1;SPV=7.3665e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7 +chr6 29707390 . T TACACAC 0 PASS DP=25;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:4,3:2,1 +chr6 30415665 . C G 0 PASS DP=54;GPV=1;SPV=0.0014573;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:6,9:10,8 +chr6 30515671 . CTAGA C 0 PASS DP=43;GPV=1;SPV=0.0010237;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:11,10:4,3 +chr6 31409323 . A G 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,2:6,5 +chr6 31455864 . G A 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,3:13,1 +chr6 31682815 . AG A 0 PASS DP=23;GPV=1;SPV=0.00054583;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:1,6:1,4 +chr6 32010061 . G T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr6 32215812 . CCTTT C 0 PASS DP=47;GPV=1;SPV=0.014575;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,1:4,6 +chr6 32215827 . TC T 0 PASS DP=39;GPV=1;SPV=0.018966;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,1:2,5 +chr6 32690111 . A G 0 PASS DP=37;GPV=1;SPV=0.11117;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,6:10,2 +chr6 33230722 . G GGAA 0 PASS DP=50;GPV=1;SPV=0.0088608;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,7:4,4:8,3 +chr6 33309720 . CT C 0 PASS DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,5:0,4:0,1 +chr6 34136563 . GAC G 0 PASS DP=34;GPV=1;SPV=0.0079095;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:3,4:2,4 +chr6 34397811 . C CT 0 PASS DP=39;GPV=1;SPV=0.12474;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:10,1:7,2 +chr6 35182724 . TATATATATATA T 0 PASS DP=23;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:0,1:1,1 +chr6 35383871 . G A 0 PASS DP=69;GPV=1;SPV=0.025813;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:16,6:15,3 +chr6 36175391 . GA G 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr6 36549329 . CTCTTCT C 0 PASS DP=33;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:1,3:7,3 +chr6 37044481 . T TA 0 PASS DP=35;GPV=1;SPV=0.045954;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:12,4:5,4 +chr6 37121230 . C CAA 0 PASS DP=42;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:3,9:2,1 +chr6 37959118 . C T 0 PASS DP=69;GPV=1;SPV=0.0010244;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:14,5:13,5 +chr6 39724452 . CA C 0 PASS DP=31;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,8:3,7:1,1 +chr6 40655197 . ATG A 0 PASS DP=39;GPV=1;SPV=0.28876;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2 +chr6 41283329 . C A 0 PASS DP=59;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,1:10,3 +chr6 41565463 . A C 0 PASS DP=64;GPV=1;SPV=3.5464e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,11:9,4 +chr6 42841075 . TA T 0 PASS DP=25;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,9:4,4:1,5 +chr6 43398399 . CT C 0 PASS DP=38;GPV=1;SPV=0.017846;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6 +chr6 44508149 . A C 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,6:12,5 +chr6 45150720 . G GTT 0 PASS DP=28;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,4:2,2 +chr6 45318277 . A T 0 PASS DP=54;GPV=1;SPV=0.03797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:15,4:13,3 +chr6 45866424 . T C 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,1:9,3 +chr6 47660260 . GACACACAC G 0 PASS DP=33;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,10:3,8:2,2 +chr6 49020323 . T C 0 PASS DP=38;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:1,2:1,1:0,1 +chr6 49721139 . G GTTT 0 PASS DP=33;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:2,4:4,2 +chr6 49769054 . A AACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.030049;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:10,3:10,5 +chr6 51202674 . G A 0 PASS DP=54;GPV=1;SPV=0.038803;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:8,7:13,3 +chr6 51519797 . C T 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,4:14,6 +chr6 51671401 . G A 0 PASS DP=65;GPV=1;SPV=0.0007325;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,5:13,5 +chr6 52363343 . C G 0 PASS DP=81;GPV=1;SPV=0.0013429;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:15,5:17,4 +chr6 52945792 . A G 0 PASS DP=65;GPV=1;SPV=0.00051706;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,3:11,7 +chr6 53253265 . ATC A 0 PASS DP=51;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr6 54004937 . C CT 0 PASS DP=27;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,7:0,6:3,1 +chr6 54305991 . T TATC 0 PASS DP=82;GPV=1;SPV=0.0012439;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:20,5:16,6 +chr6 55055543 . C T 0 PASS DP=56;GPV=1;SPV=0.041422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:20,4:8,2 +chr6 56847002 . C CA 0 PASS DP=46;GPV=1;SPV=0.0084817;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:8,7:3,1 +chr6 56900875 . C CA 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1 +chr6 57256745 . T C 0 PASS DP=43;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:3,3:10,2 +chr6 57941432 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:3,3:7,1 +chr6 58263125 . A G 0 PASS DP=57;GPV=1;SPV=0.001881;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,2:10,6 +chr6 58392444 . A T 0 PASS DP=65;GPV=1;SPV=0.0077272;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:12,3:15,4 +chr6 59562159 . G T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr6 59562160 . A T 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,4:1,0 +chr6 59828833 . C A 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:1,0:20,4 +chr6 60656011 . C T 0 PASS DP=32;GPV=1;SPV=1.0579e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,11:1,4:3,7 +chr6 60700140 . GTATA G 0 PASS DP=23;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:3,3:3,3 +chr6 60807897 . A G 0 PASS DP=60;GPV=1;SPV=0.00044723;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,6:10,7 +chr6 62166021 . C A 0 PASS DP=63;GPV=1;SPV=0.0001375;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:6,7:14,4 +chr6 66768518 . C CA 0 PASS DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr6 67152335 . A G 0 PASS DP=73;GPV=1;SPV=0.02373;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:12,4:19,4 +chr6 67662695 . C CT 0 PASS DP=21;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2 +chr6 68646475 . C CA 0 PASS DP=50;GPV=1;SPV=0.014937;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:11,7:8,3 +chr6 69735444 . A T 0 PASS DP=64;GPV=1;SPV=0.28571;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:2,2:1,1:1,1 +chr6 70227424 . T TAAA 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,5:4,2 +chr6 70938255 . GATAC G 0 PASS DP=46;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,3:9,5 +chr6 71355521 . G A 0 PASS DP=50;GPV=1;SPV=0.00013746;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:9,5:4,12 +chr6 71382249 . A AAT 0 PASS DP=42;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2 +chr6 71807875 . A AC 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:12,5:3,6 +chr6 72196379 . C T 0 PASS DP=70;GPV=1;SPV=0.031815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,7:10,4:6,3 +chr6 72275120 . GTATATATATATATATATATATATATATATATA G 0 PASS DP=19;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,6:2,5:1,1 +chr6 72339150 . A G 0 PASS DP=56;GPV=1;SPV=0.040704;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,3:12,1 +chr6 72500306 . AAG A 0 PASS DP=31;GPV=1;SPV=0.47431;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,2:10,1:4,1 +chr6 72500330 . AAG A 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2 +chr6 72587312 . AAAAGAAAG A 0 PASS DP=58;GPV=1;SPV=0.041365;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chr6 74165440 . C G 0 PASS DP=69;GPV=1;SPV=9.4662e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:9,5:14,7 +chr6 74797476 . C CAT 0 PASS DP=21;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:1,3:4,1 +chr6 74810977 . T C 0 PASS DP=45;GPV=1;SPV=0.0041136;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:6,6:12,4 +chr6 75326112 . G T 0 PASS DP=61;GPV=1;SPV=0.041869;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:13,4:18,2 +chr6 75370340 . T C 0 PASS DP=43;GPV=1;SPV=0.027357;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,1:5,4 +chr6 75563329 . C CTGTGTGTG 0 PASS DP=31;GPV=1;SPV=0.0024526;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:1,5:3,2 +chr6 76048137 . C A 0 PASS DP=59;GPV=1;SPV=0.020112;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:8,3:18,3 +chr6 76687005 . A C 0 PASS DP=48;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:2,1:0,1 +chr6 78186375 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,9:2,7:0,2 +chr6 78541340 . GAGAGAGCCAGACAGCA G 0 PASS DP=54;GPV=1;SPV=0.0010369;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:12,6:3,4 +chr6 79461984 . C G 0 PASS DP=56;GPV=1;SPV=0.0087781;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,5:11,2 +chr6 80145831 . C A 0 PASS DP=76;GPV=1;SPV=1.1889e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:12,9:9,7 +chr6 81647497 . A T 0 PASS DP=74;GPV=1;SPV=0.00096111;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,8:11,4 +chr6 83221158 . C CAAAAAAAAA 0 PASS DP=42;GPV=1;SPV=0.018671;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:8,7:5,1 +chr6 83237314 . GA G 0 PASS DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:10,6:5,6 +chr6 83497818 . A G 0 PASS DP=25;GPV=1;SPV=0.082213;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,4:7,1 +chr6 84254247 . G GT 0 PASS DP=41;GPV=1;SPV=3.216e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,18:2,11:5,7 +chr6 85135130 . A C 0 PASS DP=28;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:7,1:0,1 +chr6 85939416 . A T 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:9,1:16,3 +chr6 87128988 . C CGTATATATATGTATGTATATT 0 PASS DP=52;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,4:7,1:16,3 +chr6 87519184 . A ATGTGTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:1,8:10,1 +chr6 87599354 . A ATTAT 0 PASS DP=42;GPV=1;SPV=0.0011759;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:5,9:6,6 +chr6 87673155 . T A 0 PASS DP=27;GPV=1;SPV=0.16176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,4:4,1:4,3 +chr6 88860839 . C A 0 PASS DP=31;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,2:3,1:3,1 +chr6 90100726 . CAG C 0 PASS DP=53;GPV=1;SPV=0.119;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,4:14,2:12,2 +chr6 90377719 . CTTTTTTCT C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,1:8,3 +chr6 90377955 . C CTT 0 PASS DP=28;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:7,5:4,1 +chr6 90613784 . G A 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:2,1:0,1 +chr6 92125323 . C A 0 PASS DP=70;GPV=1;SPV=0.0005561;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:13,8:14,3 +chr6 92434273 . GT G 0 PASS DP=51;GPV=1;SPV=0.0039973;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,6:6,3 +chr6 93069000 . T A 0 PASS DP=44;GPV=1;SPV=0.0061026;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,6:8,2 +chr6 93832826 . C T 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,5:8,2 +chr6 94052100 . C CATCT 0 PASS DP=61;GPV=1;SPV=0.039629;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:6,4:14,5 +chr6 94575966 . G A 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,2:16,7 +chr6 94581085 . C G 0 PASS DP=70;GPV=1;SPV=0.070286;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:11,3:26,2 +chr6 95486242 . T C 0 PASS DP=59;GPV=1;SPV=0.075302;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,2:15,3 +chr6 97284483 . G GCA 0 PASS DP=48;GPV=1;SPV=0.0067841;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,11:5,8:3,3 +chr6 97992099 . C A 0 PASS DP=39;GPV=1;SPV=0.0096405;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,7:11,2 +chr6 98224506 . A C 0 PASS DP=57;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:3,2:2,1:1,1 +chr6 98609318 . C CAATAAATAAATA 0 PASS DP=57;GPV=1;SPV=0.021295;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:11,6:13,4 +chr6 99097661 . ATT A 0 PASS DP=45;GPV=1;SPV=0.0053012;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,14:5,12:7,2 +chr6 99107066 . C A 0 PASS DP=63;GPV=1;SPV=0.002821;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,1:13,6 +chr6 100608289 . TTA T 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4 +chr6 101681421 . T G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,1:14,3 +chr6 102120230 . A G 0 PASS DP=74;GPV=1;SPV=0.00096111;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,3:11,9 +chr6 102244230 . C CAA 0 PASS DP=36;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,4:9,2 +chr6 103531457 . T A 0 PASS DP=61;GPV=1;SPV=0.0061655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:17,3:9,5 +chr6 103711877 . T C 0 PASS DP=40;GPV=1;SPV=0.014654;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,4:7,6 +chr6 104444919 . C T 0 PASS DP=45;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:6,2:4,1:2,1 +chr6 105906381 . GCACA G 0 PASS DP=34;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,8:4,5:0,3 +chr6 105968316 . C G 0 PASS DP=52;GPV=1;SPV=0.015217;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,2:11,5 +chr6 106348910 . C CAA 0 PASS DP=28;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,8:2,6:2,2 +chr6 110923933 . G A 0 PASS DP=65;GPV=1;SPV=2.7315e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:7,9:15,8 +chr6 112312923 . C T 0 PASS DP=53;GPV=1;SPV=0.0369;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,7:10,3:16,4 +chr6 114045997 . G GCACACACACACA 0 PASS DP=41;GPV=1;SPV=0.03726;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,5:4,2 +chr6 115067637 . T A 0 PASS DP=70;GPV=1;SPV=0.061918;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:22,3:14,2 +chr6 115531711 . T TATAGATAG 0 PASS DP=57;GPV=1;SPV=0.014357;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:7,4:12,6 +chr6 115643130 . C T 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,7:8,2 +chr6 117430681 . CAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,7:3,6:2,1 +chr6 118529612 . A C 0 PASS DP=40;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,2:3,1:3,1 +chr6 120692029 . C T 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2 +chr6 121462554 . C A 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3 +chr6 121606531 . T C 0 PASS DP=30;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,8:5,5:4,3 +chr6 121928140 . CA C 0 PASS DP=35;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,7:3,2 +chr6 122053984 . T C 0 PASS DP=60;GPV=1;SPV=0.00047262;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:4,2:20,13 +chr6 122633975 . C T 0 PASS DP=52;GPV=1;SPV=0.024127;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:10,3:16,5 +chr6 122858018 . C T 0 PASS DP=48;GPV=1;SPV=0.0021937;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:14,23:3,11:11,12 +chr6 123238249 . C T 0 PASS DP=61;GPV=1;SPV=0.00054254;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:12,7:12,6 +chr6 124841840 . ATT A 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1 +chr6 125517647 . CA C 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:18,6:4,3 +chr6 125703568 . G A 0 PASS DP=53;GPV=1;SPV=0.0078821;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:9,5:16,6 +chr6 126856226 . ATTTATTTTAT A 0 PASS DP=50;GPV=1;SPV=0.027339;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:8,5:14,7 +chr6 129371607 . C CT 0 PASS DP=28;GPV=1;SPV=0.04053;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,6:6,2 +chr6 132533977 . C T 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,2:11,2 +chr6 132973261 . T C 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,4:4,6 +chr6 133385393 . G C 0 PASS DP=50;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:0,1:2,1 +chr6 134625659 . C G 0 PASS DP=71;GPV=1;SPV=0.0030392;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,5:18,7 +chr6 135313506 . G C 0 PASS DP=64;GPV=1;SPV=0.0086598;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:11,2:16,5 +chr6 135750267 . C A 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1 +chr6 136786379 . C CA 0 PASS DP=35;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:9,9:3,1 +chr6 137948309 . A ACT 0 PASS DP=33;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:3,2:4,3 +chr6 138043394 . C CA 0 PASS DP=26;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:9,3:2,1 +chr6 138147228 . GA G 0 PASS DP=43;GPV=1;SPV=0.023132;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,5:11,5 +chr6 138819248 . A G 0 PASS DP=61;GPV=1;SPV=0.051532;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:19,5:15,2 +chr6 138955457 . A AAGTGTGTGTGTGT 0 PASS DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,1:8,3 +chr6 139384172 . G T 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,1:15,3 +chr6 142204643 . ATTTAATCCTTTTATATTTAAAAGGATTTAAAT A 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,4:10,1 +chr6 142244318 . C CAA 0 PASS DP=31;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:2,8:4,1 +chr6 143580508 . C CA 0 PASS DP=46;GPV=1;SPV=0.019763;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,4:3,3:3,1 +chr6 143977473 . T C 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,2:8,3 +chr6 145034839 . CTGTCA C 0 PASS DP=68;GPV=1;SPV=0.000451;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:9,7:15,3 +chr6 145934473 . T TAAATAAAATAAAATA 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,6:7,1 +chr6 146089679 . T A 0 PASS DP=61;GPV=1;SPV=0.015414;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:19,5:9,2 +chr6 146455122 . T C 0 PASS DP=44;GPV=1;SPV=0.039565;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:16,6:7,3 +chr6 146568404 . A T 0 PASS DP=39;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:3,2:3,2:0,0 +chr6 147461958 . CA C 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr6 147626818 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr6 147630491 . T C 0 PASS DP=49;GPV=1;SPV=0.004211;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,5:5,7 +chr6 147719790 . GT G 0 PASS DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2 +chr6 147719796 . G A 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,3:19,2 +chr6 148368772 . A G 0 PASS DP=34;GPV=1;SPV=0.055478;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,4:7,2 +chr6 148899092 . CT C 0 PASS DP=33;GPV=1;SPV=0.0039295;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:2,5:2,3 +chr6 149324826 . C CT 0 PASS DP=34;GPV=1;SPV=0.035315;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,5:8,3 +chr6 149790516 . C CT 0 PASS DP=31;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,4:3,6 +chr6 150085900 . CAA C 0 PASS DP=43;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,11:1,6:8,5 +chr6 150202396 . C G 0 PASS DP=68;GPV=1;SPV=0.003184;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,6:12,2 +chr6 150884141 . A AT 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3 +chr6 152256431 . AAAATAAAT A 0 PASS DP=43;GPV=1;SPV=0.2206;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:11,3:17,3 +chr6 153401835 . A T 0 PASS DP=48;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:7,5:8,4 +chr6 155627833 . A C 0 PASS DP=32;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,3:5,1 +chr6 155968845 . C A 0 PASS DP=56;GPV=1;SPV=0.0012998;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:9,5:13,6 +chr6 162713493 . C CA 0 PASS DP=32;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,6:3,4:6,2 +chr6 164455129 . T A 0 PASS DP=50;GPV=1;SPV=0.011343;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,10:6,3:8,7 +chr6 164745498 . TC T 0 PASS DP=37;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:7,3:2,4 +chr6 164787517 . C A 0 PASS DP=101;GPV=1;SPV=1.7213e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:18,8:18,11 +chr6 164939524 . A AG 0 PASS DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:12,3:12,2 +chr6 164939526 . A G 0 PASS DP=43;GPV=1;SPV=0.12337;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,3:11,2 +chr6 164939530 . A G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2 +chr6 165398498 . T A 0 PASS DP=54;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:2,2:2,2:0,0 +chr6 165656258 . T A 0 PASS DP=44;GPV=1;SPV=0.023879;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:6,2:8,4 +chr6 166893252 . C A 0 PASS DP=55;GPV=1;SPV=0.0022056;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,6:11,4 +chr6 166963191 . TG T 0 PASS DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,7:5,2 +chr6 167177840 . A G 0 PASS DP=59;GPV=1;SPV=0.019711;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:16,5:12,2 +chr6 167698965 . T C 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:19,5:14,1 +chr6 167977818 . C G 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,5:2,1 +chr6 168603242 . CTT C 0 PASS DP=31;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,8:4,4:4,4 +chr6 168618449 . G C 0 PASS DP=36;GPV=1;SPV=0.073366;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,2:9,6 +chr6 168931505 . C T 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,2:9,2 +chr6 168976849 . C T 0 PASS DP=66;GPV=1;SPV=0.038024;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,2:18,2 +chr6 169724395 . C G 0 PASS DP=39;GPV=1;SPV=0.14022;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,2:8,3 +chr6 170656349 . G C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,1:2,3 +chr7 404072 . G A 0 PASS DP=20;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,5:3,3 +chr7 494624 . AG A 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2 +chr7 735331 . C G 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,3:4,2 +chr7 745433 . C A 0 PASS DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:27,2:11,4 +chr7 955827 . A AC 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:14,3:19,1 +chr7 1003990 . T TGA 0 PASS DP=42;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:19,4:2,0 +chr7 1432727 . G A 0 PASS DP=50;GPV=1;SPV=0.0023389;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,3:5,5 +chr7 2946634 . C G 0 PASS DP=70;GPV=1;SPV=0.0010857;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,6:10,3 +chr7 3554208 . C A 0 PASS DP=72;GPV=1;SPV=0.0014163;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,4:18,7 +chr7 4680676 . C A 0 PASS DP=25;GPV=1;SPV=0.027415;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:3,9:3,1 +chr7 5184282 . C CTT 0 PASS DP=24;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,2:4,2 +chr7 5411515 . C CA 0 PASS DP=23;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,6:1,1 +chr7 5920207 . C CA 0 PASS DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,4:8,4 +chr7 5932183 . G A 0 PASS DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3 +chr7 6092010 . TC T 0 PASS DP=43;GPV=1;SPV=0.1025;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr7 6275849 . C G 0 PASS DP=58;GPV=1;SPV=0.0066305;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:16,6:10,3 +chr7 6410880 . A AT 0 PASS DP=27;GPV=1;SPV=0.19783;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,3:7,2:5,1 +chr7 6754598 . C A 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:0,0:21,4 +chr7 7429425 . CTCACATACACACACACTCTCTT C 0 PASS DP=48;GPV=1;SPV=0.016338;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,2:9,7 +chr7 9156843 . C CAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.0070449;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,9:4,1 +chr7 9762027 . AAC A 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr7 9762054 . ATATATATTTATAT A 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,3:2,1 +chr7 10795416 . C CCACACACA 0 PASS DP=46;GPV=1;SPV=0.011637;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,14:11,11:6,3 +chr7 11638318 . T A 0 PASS DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,5:14,4 +chr7 12502281 . C T 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,4:4,4 +chr7 12888535 . T TTC 0 PASS DP=42;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:3,1:18,3 +chr7 13324565 . T TCC 0 PASS DP=27;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:3,1:8,5 +chr7 13820734 . T TCTTC 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1 +chr7 14188044 . A G 0 PASS DP=74;GPV=1;SPV=0.035742;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:18,2:16,3 +chr7 14577572 . G A 0 PASS DP=75;GPV=1;SPV=0.00029763;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:16,4:15,10 +chr7 14906441 . T C 0 PASS DP=35;GPV=1;SPV=0.16366;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,3:10,2 +chr7 15432333 . T TATATATATACATAC 0 PASS DP=45;GPV=1;SPV=0.086103;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:9,3:11,1 +chr7 15586829 . G T 0 PASS DP=67;GPV=1;SPV=0.014512;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:16,3:15,4 +chr7 15997975 . G T 0 PASS DP=60;GPV=1;SPV=0.011243;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,5:16,5 +chr7 16628905 . GT G 0 PASS DP=58;GPV=1;SPV=0.039346;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:7,7:14,1 +chr7 16919988 . C T 0 PASS DP=66;GPV=1;SPV=0.00086166;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,7:14,6 +chr7 21203931 . C CCACACACA 0 PASS DP=27;GPV=1;SPV=0.20979;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,3:3,1 +chr7 21227141 . C T 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:21,2:12,2 +chr7 21789796 . TC T 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,2:13,2 +chr7 23034703 . C A 0 PASS DP=59;GPV=1;SPV=6.6609e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:12,10:8,6 +chr7 23154355 . A AAAAC 0 PASS DP=55;GPV=1;SPV=0.031691;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:8,5:13,6 +chr7 24779498 . G GGTGTGTGTGT 0 PASS DP=53;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,5:5,5 +chr7 24940809 . CT C 0 PASS DP=54;GPV=1;SPV=0.0336;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr7 26090458 . C CAA 0 PASS DP=37;GPV=1;SPV=0.016673;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,5:3,1 +chr7 26301018 . CCAA C 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr7 28000618 . C T 0 PASS DP=33;GPV=1;SPV=0.019346;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:9,6:4,2 +chr7 28000622 . C T 0 PASS DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,4:6,1 +chr7 28348385 . CTCTCTCTCTCTG C 0 PASS DP=45;GPV=1;SPV=0.053885;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:8,2:10,2 +chr7 28624676 . G GAA 0 PASS DP=33;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:10,4:5,1 +chr7 32443079 . CAAA C 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:1,2:1,5 +chr7 33020563 . T C 0 PASS DP=62;GPV=1;SPV=0.0012119;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,5:15,9 +chr7 33783473 . CTT C 0 PASS DP=29;GPV=1;SPV=0.23498;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:4,3:8,2 +chr7 34386872 . C T 0 PASS DP=59;GPV=1;SPV=9.3501e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:17,24:9,14:8,10 +chr7 35574098 . AG A 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,4:0,2 +chr7 36056071 . GCAGGA G 0 PASS DP=59;GPV=1;SPV=0.0035575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,4:9,4 +chr7 36056080 . T A 0 PASS DP=58;GPV=1;SPV=0.0022392;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,4:7,4 +chr7 36056083 . T TG 0 PASS DP=62;GPV=1;SPV=0.0053469;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4 +chr7 36056086 . T TA 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4 +chr7 36198359 . G A 0 PASS DP=29;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,1:1,3 +chr7 36778301 . C A 0 PASS DP=60;GPV=1;SPV=0.003548;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:12,3:13,6 +chr7 37691045 . C G 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,6:8,2 +chr7 38548054 . A G 0 PASS DP=59;GPV=1;SPV=0.027745;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:16,7:15,1 +chr7 40346934 . T C 0 PASS DP=45;GPV=1;SPV=1.4316e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,20:6,12:2,8 +chr7 40988895 . T G 0 PASS DP=58;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:1,2:1,1:0,1 +chr7 43032440 . A AAGAAG 0 PASS DP=25;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:5,4:3,1 +chr7 43898788 . AATTT A 0 PASS DP=42;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,6:5,4:5,2 +chr7 44085359 . C A 0 PASS DP=29;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:6,1:1,4 +chr7 45547680 . C CT 0 PASS DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:3,1:3,3 +chr7 47172855 . T G 0 PASS DP=59;GPV=1;SPV=0.013178;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:12,1:12,5 +chr7 47910826 . T TTGTGTGTGTGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:2,3:9,2 +chr7 48294442 . G GT 0 PASS DP=46;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:2,4:1,2:1,2 +chr7 51086358 . GAAAAAAAAA G 0 PASS DP=31;GPV=1;SPV=0.0011057;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,8:1,6:1,2 +chr7 51271899 . T A 0 PASS DP=77;GPV=1;SPV=0.00028557;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:19,7:13,7 +chr7 51541412 . G A 0 PASS DP=52;GPV=1;SPV=0.00053327;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,5:9,5 +chr7 51610845 . G GTT 0 PASS DP=34;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:5,8:6,1 +chr7 52199611 . C CAA 0 PASS DP=47;GPV=1;SPV=0.00023911;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,16:3,8:6,8 +chr7 52403946 . A G 0 PASS DP=43;GPV=1;SPV=0.034956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,2:9,3 +chr7 52445996 . ATTTTTT A 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,3:5,2 +chr7 53857364 . C T 0 PASS DP=70;GPV=1;SPV=0.0048332;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,6:17,4 +chr7 54302829 . C CA 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr7 55143189 . C T 0 PASS DP=57;GPV=1;SPV=0.0042512;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,5:15,5 +chr7 55323199 . T C 0 PASS DP=36;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,3:3,1:3,2 +chr7 55924515 . C A 0 PASS DP=63;GPV=1;SPV=0.0036989;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,4:17,6 +chr7 56151217 . T C 0 PASS DP=39;GPV=1;SPV=0.22147;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:13,2:8,1 +chr7 56168398 . C T 0 PASS DP=46;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,3:1,3:0,0 +chr7 56447514 . CT C 0 PASS DP=24;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,2:2,3 +chr7 56815431 . G C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,1:6,3 +chr7 56870617 . CT C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,1:4,3 +chr7 57396857 . CTT C 0 PASS DP=29;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,10:1,9:1,1 +chr7 57408800 . G GTTTTCTTTTT 0 PASS DP=24;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,9:0,6:3,3 +chr7 57499513 . G T 0 PASS DP=55;GPV=1;SPV=0.00070765;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,5:7,6 +chr7 57617502 . A G 0 PASS DP=73;GPV=1;SPV=0.09126;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:21,3:20,2 +chr7 57708767 . A G 0 PASS DP=214;GPV=1;SPV=0.042999;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:51,5:36,11 +chr7 58074648 . G T 0 PASS DP=192;GPV=1;SPV=0.0026177;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:87,17:52,13:35,4 +chr7 58074649 . C T 0 PASS DP=194;GPV=1;SPV=0.00093139;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:82,23:48,19:34,4 +chr7 58081151 . C G 0 PASS DP=212;GPV=1;SPV=0.029944;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:100,21:48,9:52,12 +chr7 58083546 . C G 0 PASS DP=109;GPV=1;SPV=0.0098911;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:29,7:23,4 +chr7 58089349 . CAA C 0 PASS DP=40;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:8,5:5,1 +chr7 58207631 . A C 0 PASS DP=152;GPV=1;SPV=0.016846;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:29,8:42,9 +chr7 59849357 . G T 0 PASS DP=43;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:1,4:21,1 +chr7 59967230 . T C 0 PASS DP=142;GPV=1;SPV=0.04075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:75,9:32,3:43,6 +chr7 60443284 . T C 0 PASS DP=75;GPV=1;SPV=0.0056445;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,8:13,1 +chr7 60938782 . AT A 0 PASS DP=103;GPV=1;SPV=0.038854;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,9:17,8:19,1 +chr7 60945409 . C T 0 PASS DP=114;GPV=1;SPV=0.030386;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:21,4:29,3 +chr7 61002037 . T C 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1 +chr7 61013469 . G A 0 PASS DP=63;GPV=1;SPV=0.040635;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:18,5:16,2 +chr7 61116195 . C A 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr7 61117113 . C G 0 PASS DP=166;GPV=1;SPV=0.034069;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,15:49,5:31,10 +chr7 61118060 . G T 0 PASS DP=46;GPV=1;SPV=0.0089809;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:3,3:15,4 +chr7 61255209 . T A 0 PASS DP=54;GPV=1;SPV=0.04;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,3:10,1 +chr7 61409812 . A G 0 PASS DP=253;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:113,23:93,19:20,4 +chr7 61410142 . TC T 0 PASS DP=184;GPV=1;SPV=0.010722;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:77,16:30,6:47,10 +chr7 61527517 . T G 0 PASS DP=69;GPV=1;SPV=0.029593;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:31,6:8,3 +chr7 61764874 . T C 0 PASS DP=33;GPV=1;SPV=0.11252;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:6,6:12,1 +chr7 61804323 . C T 0 PASS DP=67;GPV=1;SPV=0.0036085;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:17,5:10,3 +chr7 61839512 . T G 0 PASS DP=25;GPV=1;SPV=0.24348;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:6,1:7,2 +chr7 62030363 . C T 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,2:3,5 +chr7 63564349 . A G 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,3:16,1 +chr7 63629694 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chr7 63754992 . T A 0 PASS DP=268;GPV=1;SPV=0.007447;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:129,20:42,4:87,16 +chr7 63769322 . G A 0 PASS DP=51;GPV=1;SPV=0.010262;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6 +chr7 63835793 . A T 0 PASS DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1 +chr7 64004410 . T TAAA 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,4:7,2 +chr7 64097000 . T C 0 PASS DP=42;GPV=1;SPV=0.032916;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:12,2:8,5 +chr7 64491938 . T G 0 PASS DP=43;GPV=1;SPV=0.037956;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,6:11,4 +chr7 64847332 . A ATAT 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:0,5:6,5 +chr7 64963760 . A T 0 PASS DP=48;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:3,2:3,1:0,1 +chr7 65241850 . T C 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,4:0,2 +chr7 65505802 . T A 0 PASS DP=58;GPV=1;SPV=0.10954;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,4:14,1 +chr7 66509760 . C A 0 PASS DP=26;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:1,2:3,2 +chr7 66983916 . A AT 0 PASS DP=28;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,3:5,3 +chr7 67266492 . A AT 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,3:7,2 +chr7 68029021 . C T 0 PASS DP=24;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:3,3:7,2 +chr7 68479343 . T A 0 PASS DP=53;GPV=1;SPV=0.021836;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,3:13,4 +chr7 68499365 . G A 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,3:3,1 +chr7 68894513 . C A 0 PASS DP=77;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,1:24,4 +chr7 69137867 . G GA 0 PASS DP=55;GPV=1;SPV=0.0050212;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,6:6,5 +chr7 70340163 . A AACACACACACACAC 0 PASS DP=41;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,5:5,2 +chr7 71334028 . A G 0 PASS DP=62;GPV=1;SPV=0.037817;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:16,4:15,2 +chr7 71836622 . C CT 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,5:2,2 +chr7 72287435 . AT A 0 PASS DP=35;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:9,2:0,4 +chr7 73805601 . C CAAAAAA 0 PASS DP=31;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:4,3:7,1 +chr7 73835197 . TCTCCCTCTC T 0 PASS DP=32;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:3,2:6,6 +chr7 73836216 . C T 0 PASS DP=31;GPV=1;SPV=0.032901;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,1:7,5 +chr7 74547439 . C CT 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr7 75010085 . C T 0 PASS DP=36;GPV=1;SPV=0.0084069;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:4,4:7,9 +chr7 75110961 . A G 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,5:3,4 +chr7 76441133 . T C 0 PASS DP=66;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,1:18,4 +chr7 76606109 . G C 0 PASS DP=74;GPV=1;SPV=0.024562;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:18,3:17,7 +chr7 76958294 . T G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr7 77001029 . C T 0 PASS DP=52;GPV=1;SPV=0.039335;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,5:11,1 +chr7 77053418 . G A 0 PASS DP=133;GPV=1;SPV=0.0025089;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:51,20:24,11:27,9 +chr7 77357429 . C A 0 PASS DP=64;GPV=1;SPV=0.00082439;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:18,4:8,8 +chr7 77440170 . ATTT A 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5 +chr7 77998313 . C A 0 PASS DP=52;GPV=1;SPV=0.00039176;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:10,10:9,7 +chr7 78004586 . CTGTGTGTGTG C 0 PASS DP=47;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,11:6,5:6,6 +chr7 78083388 . GA G 0 PASS DP=16;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:2,3:0,0 +chr7 80020388 . G C 0 PASS DP=80;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,2:19,3 +chr7 81539388 . A ATATG 0 PASS DP=41;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:10,2:11,2 +chr7 83775895 . T C 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,1:11,3 +chr7 84534144 . A G 0 PASS DP=57;GPV=1;SPV=0.00022237;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:14,7:7,9 +chr7 85333823 . G C 0 PASS DP=32;GPV=1;SPV=0.0013654;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,4:2,5 +chr7 86331047 . C A 0 PASS DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,9:8,4 +chr7 86627560 . CT C 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,5:2,1 +chr7 88053624 . GAAAGAAAGAA G 0 PASS DP=37;GPV=1;SPV=0.0049129;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:6,2:1,5 +chr7 88113703 . AATATATAT A 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,4:3,1 +chr7 89375746 . C T 0 PASS DP=30;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,5:5,4:1,1 +chr7 89424208 . T C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,2:3,2 +chr7 90100890 . A ATT 0 PASS DP=37;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,8:5,2 +chr7 90901691 . C T 0 PASS DP=41;GPV=1;SPV=0.044901;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:4,4:14,1 +chr7 91863676 . A C 0 PASS DP=29;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:0,1:3,1 +chr7 92870188 . TA T 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1 +chr7 95500568 . CAAAA C 0 PASS DP=26;GPV=1;SPV=0.0015076;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,9:3,1 +chr7 97702887 . C CTTAAAG 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,4:0,2 +chr7 98405344 . GCTTTCTTT G 0 PASS DP=43;GPV=1;SPV=0.011224;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,8:7,5:3,3 +chr7 100181901 . C CAA 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr7 100697996 . CTT C 0 PASS DP=21;GPV=1;SPV=0.01037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,5:2,2 +chr7 101002450 . G A 0 PASS DP=291;GPV=1;SPV=0.00231;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:118,17:63,7:55,10 +chr7 101098714 . G C 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:15,2:9,5 +chr7 101320558 . C T 0 PASS DP=29;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,3:0,1:0,2 +chr7 101342021 . T TTTC 0 PASS DP=44;GPV=1;SPV=0.21569;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,3:5,1:14,2 +chr7 101355066 . TTTTTC T 0 PASS DP=32;GPV=1;SPV=0.011229;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,4:5,5 +chr7 101946544 . C CA 0 PASS DP=32;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:5,4:3,1 +chr7 102060580 . CATATAT C 0 PASS DP=41;GPV=1;SPV=0.042412;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr7 102564422 . C CAA 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:22,3:5,1 +chr7 102566067 . G C 0 PASS DP=80;GPV=1;SPV=0.036714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,7:16,3 +chr7 102576894 . G A 0 PASS DP=93;GPV=1;SPV=0.03782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,5:12,3 +chr7 102592796 . G A 0 PASS DP=159;GPV=1;SPV=0.00012025;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:56,23:27,13:29,10 +chr7 102618555 . C T 0 PASS DP=67;GPV=1;SPV=4.7617e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,10:7,3 +chr7 105501970 . ATAT A 0 PASS DP=40;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,2:2,1:0,1 +chr7 106586896 . A C 0 PASS DP=49;GPV=1;SPV=2.3666e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:6,7:3,2 +chr7 107749938 . T A 0 PASS DP=60;GPV=1;SPV=0.029646;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,1:10,8 +chr7 108692388 . A ATTT 0 PASS DP=26;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:1,3:1,3 +chr7 108725935 . A AGAGAGG 0 PASS DP=28;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,2:1,5 +chr7 110192628 . T A 0 PASS DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:2,2:4,1 +chr7 110315561 . C CCT 0 PASS DP=29;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:4,5:2,2 +chr7 110963987 . A T 0 PASS DP=55;GPV=1;SPV=0.029051;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,6:4,4:5,2 +chr7 110989531 . CA C 0 PASS DP=31;GPV=1;SPV=0.037021;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:6,2:0,3 +chr7 115821961 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:0,14:0,10:0,4 +chr7 117059807 . C CA 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr7 119335917 . GT G 0 PASS DP=33;GPV=1;SPV=0.027438;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,4:3,1 +chr7 120081165 . A G 0 PASS DP=38;GPV=1;SPV=0.0018031;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,6:3,3 +chr7 120828655 . C CT 0 PASS DP=22;GPV=1;SPV=0.0095459;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1 +chr7 123360172 . CTGTG C 0 PASS DP=40;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,5:3,2:0,3 +chr7 125248961 . G GT 0 PASS DP=30;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:5,6:2,1 +chr7 126360474 . C G 0 PASS DP=66;GPV=1;SPV=0.042184;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,2:20,3 +chr7 126595400 . T A 0 PASS DP=25;GPV=1;SPV=0.001998;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,5:0,3:1,2 +chr7 128188120 . G A 0 PASS DP=35;GPV=1;SPV=0.125;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,2:1,1:3,1 +chr7 129963936 . G GT 0 PASS DP=44;GPV=1;SPV=0.00068862;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:7,10:2,2 +chr7 130782419 . CTCTT C 0 PASS DP=32;GPV=1;SPV=0.0019985;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,3:3,5 +chr7 131983250 . A G 0 PASS DP=33;GPV=1;SPV=0.00029663;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:3,5:4,4 +chr7 132020640 . G A 0 PASS DP=38;GPV=1;SPV=0.019656;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,5:5,1 +chr7 132716676 . C CA 0 PASS DP=31;GPV=1;SPV=0.001026;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,10:3,8:1,2 +chr7 133227300 . TATA T 0 PASS DP=16;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:2,1:1,1 +chr7 134371720 . C G 0 PASS DP=47;GPV=1;SPV=0.00095953;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,7:7,2 +chr7 134544731 . G C 0 PASS DP=57;GPV=1;SPV=0.0014954;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,1:9,5 +chr7 136452552 . G A 0 PASS DP=39;GPV=1;SPV=0.013177;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:5,1:1,4 +chr7 139490533 . CA C 0 PASS DP=19;GPV=1;SPV=0.00098508;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,8:0,6:1,2 +chr7 139623517 . CAA C 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,3:2,3 +chr7 140583926 . G GA 0 PASS DP=31;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr7 141002399 . C T 0 PASS DP=25;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:3,1:1,3 +chr7 141604374 . G GTATATATATA 0 PASS DP=25;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:2,5:4,1 +chr7 142383337 . T TTCTATAA 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2 +chr7 143208151 . A AAGTAT 0 PASS DP=29;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,3:2,1 +chr7 143540747 . A G 0 PASS DP=60;GPV=1;SPV=0.010482;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:4,8:14,3 +chr7 144149689 . C A 0 PASS DP=23;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,2:0,1:2,1 +chr7 144244550 . C T 0 PASS DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:4,4:14,5 +chr7 144285525 . T C 0 PASS DP=97;GPV=1;SPV=0.01061;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:20,5:14,8 +chr7 145196271 . TTTTTCTTTTC T 0 PASS DP=35;GPV=1;SPV=0.023384;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2 +chr7 146856297 . G C 0 PASS DP=40;GPV=1;SPV=0.024462;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:7,2:3,2 +chr7 147010007 . CTT C 0 PASS DP=25;GPV=1;SPV=0.0032575;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,7:1,1 +chr7 147317800 . A ATATATGTG 0 PASS DP=45;GPV=1;SPV=0.066185;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:4,2:9,2 +chr7 147995532 . G T 0 PASS DP=51;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,7:3,4:4,3 +chr7 147997556 . CAA C 0 PASS DP=30;GPV=1;SPV=0.01192;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:4,5:1,1 +chr7 148737558 . G GTA 0 PASS DP=46;GPV=1;SPV=0.037585;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,9:6,4:11,5 +chr7 150776543 . C CAAA 0 PASS DP=50;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,15:6,13:6,2 +chr7 151027375 . TCTCCCCATGTGATGAAATATGGCCTCGTGGGAAGGGAAAGACCTGACCGTCCC T 0 PASS DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,1:6,5 +chr7 151759722 . A T 0 PASS DP=39;GPV=1;SPV=2.5053e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:6,5:2,8 +chr7 151874171 . GATGTATATGTAT G 0 PASS DP=50;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,7:9,4:11,3 +chr7 151962609 . G T 0 PASS DP=38;GPV=1;SPV=0.030888;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,3:10,2 +chr7 152307195 . GAGGAAGGAAGGAAGGAAGGA G 0 PASS DP=46;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:12,2:11,2 +chr7 152674740 . A AT 0 PASS DP=30;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:10,2:2,2 +chr7 152686129 . AAT A 0 PASS DP=55;GPV=1;SPV=0.037091;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,2:13,2 +chr7 153182612 . G A 0 PASS DP=56;GPV=1;SPV=2.5052e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,3:10,11 +chr7 153217951 . T TCACACACACACACACACA 0 PASS DP=26;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,4:3,1 +chr7 154436098 . T A 0 PASS DP=68;GPV=1;SPV=0.0050968;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2 +chr7 155158263 . A G 0 PASS DP=19;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,1:1,4 +chr7 155946844 . TTCCTTCTC T 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,2:6,2 +chr7 156265789 . G A 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1 +chr7 157261307 . A G 0 PASS DP=18;GPV=1;SPV=0.0013986;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:0,4:1,4 +chr7 157827362 . C CCACAACACAA 0 PASS DP=37;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:3,7:4,3 +chr7 158126119 . A G 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr7 158417950 . C T 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr8 768418 . A AT 0 PASS DP=34;GPV=1;SPV=0.079329;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:4,4:6,2 +chr8 1130104 . A G 0 PASS DP=51;GPV=1;SPV=0.059189;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,9:12,4:13,5 +chr8 2591252 . C CA 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,7:2,2 +chr8 3035255 . G A 0 PASS DP=60;GPV=1;SPV=0.0011925;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:13,8:13,7 +chr8 3233859 . C G 0 PASS DP=46;GPV=1;SPV=0.0018791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,4:5,4 +chr8 3926079 . CCATA C 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,1:6,3 +chr8 4023753 . ATTT A 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,3:2,4 +chr8 4974183 . A AT 0 PASS DP=58;GPV=1;SPV=0.0026204;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,8:11,7 +chr8 5395533 . T TTTAC 0 PASS DP=50;GPV=1;SPV=0.027862;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:8,1:12,4 +chr8 6223947 . A G 0 PASS DP=50;GPV=1;SPV=0.099033;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,6:9,4:11,2 +chr8 6228677 . A AACACACAC 0 PASS DP=48;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,11:6,6:2,5 +chr8 7102233 . A AAT 0 PASS DP=37;GPV=1;SPV=0.01905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,5:8,3 +chr8 7178754 . AT A 0 PASS DP=47;GPV=1;SPV=0.016427;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,8:6,2 +chr8 7208193 . T C 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2 +chr8 7577272 . C T 0 PASS DP=34;GPV=1;SPV=0.064336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:16,6:1,1 +chr8 7616393 . A G 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2 +chr8 7774382 . C T 0 PASS DP=19;GPV=1;SPV=0.00071446;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,2:0,5 +chr8 8059318 . G T 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4 +chr8 8140683 . C T 0 PASS DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,7:3,2 +chr8 8161203 . T C 0 PASS DP=96;GPV=1;SPV=0.0083882;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:20,10:17,7 +chr8 8176793 . G T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr8 8186779 . C G 0 PASS DP=100;GPV=1;SPV=0.018219;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:35,6:11,3 +chr8 8675975 . CA C 0 PASS DP=34;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:3,6:2,1 +chr8 9627563 . G C 0 PASS DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3 +chr8 9657272 . G A 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,1:5,3 +chr8 11567367 . GCTCAGTCAATT G 0 PASS DP=66;GPV=1;SPV=0.038024;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2 +chr8 12439341 . T G 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr8 12504320 . G T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr8 12560699 . TATAC T 0 PASS DP=93;GPV=1;SPV=0.047445;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:26,3:17,4 +chr8 12560716 . ATATATACG A 0 PASS DP=88;GPV=1;SPV=0.039034;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:25,2:14,5 +chr8 12739967 . G C 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,2:12,2 +chr8 12902624 . A G 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr8 14471992 . G T 0 PASS DP=71;GPV=1;SPV=0.00089348;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:12,3:19,10 +chr8 14507129 . C CAAACTGTCTTTTCAATTGATCGGGACAA 0 PASS DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2 +chr8 15430011 . G A 0 PASS DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:6,7:8,7 +chr8 16297238 . G GTAAGT 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr8 16961661 . CT C 0 PASS DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr8 17267469 . G T 0 PASS DP=52;GPV=1;SPV=0.050264;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:12,3:16,4 +chr8 18018899 . C T 0 PASS DP=46;GPV=1;SPV=0.0072464;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:3,3:5,4 +chr8 18164474 . C T 0 PASS DP=65;GPV=1;SPV=0.0062626;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:21,3:10,7 +chr8 18562931 . G GA 0 PASS DP=56;GPV=1;SPV=0.12152;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:18,6:9,5:9,1 +chr8 18968867 . A C 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,6:6,3 +chr8 20373742 . G A 0 PASS DP=41;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,2:3,2 +chr8 20469842 . T C 0 PASS DP=75;GPV=1;SPV=0.00034218;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,6:12,5 +chr8 20472586 . CT C 0 PASS DP=23;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,3:3,2 +chr8 22648907 . G A 0 PASS DP=58;GPV=1;SPV=0.011282;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,6:12,3 +chr8 22815366 . T C 0 PASS DP=73;GPV=1;SPV=0.00020424;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,4:18,9 +chr8 23346100 . A T 0 PASS DP=56;GPV=1;SPV=0.072845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:20,3:9,2 +chr8 24020415 . CTG C 0 PASS DP=38;GPV=1;SPV=0.052123;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,2:9,5 +chr8 24837126 . T A 0 PASS DP=52;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:3,2:1,1:2,1 +chr8 25410974 . C T 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:2,2:8,3 +chr8 25410983 . GCACGCA G 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,4:2,2:3,2 +chr8 26002932 . A G 0 PASS DP=32;GPV=1;SPV=0.0055469;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:3,5:7,3 +chr8 26004673 . CA C 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr8 26618481 . GT G 0 PASS DP=35;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,4:4,3 +chr8 26680343 . CTCTT C 0 PASS DP=36;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:4,1:9,3 +chr8 26968288 . C T 0 PASS DP=51;GPV=1;SPV=0.0023514;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:7,4:13,6 +chr8 27525370 . C T 0 PASS DP=57;GPV=1;SPV=0.0010271;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,5:9,5 +chr8 27865789 . T A 0 PASS DP=20;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,2:2,1:0,1 +chr8 28773463 . CA C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,2:7,6 +chr8 30904446 . CA C 0 PASS DP=32;GPV=1;SPV=0.0077494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,6:2,2 +chr8 31452437 . T C 0 PASS DP=69;GPV=1;SPV=0.00015011;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:15,7:11,7 +chr8 31903148 . C CTTTTT 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr8 32293718 . C CT 0 PASS DP=26;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2 +chr8 32861894 . C CA 0 PASS DP=32;GPV=1;SPV=0.0055972;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:2,8:5,1 +chr8 34653359 . T TACACAC 0 PASS DP=33;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,6:6,5 +chr8 34981471 . T C 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr8 35423852 . C CT 0 PASS DP=44;GPV=1;SPV=0.030898;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:11,5:10,2 +chr8 35531347 . T C 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,2:4,6 +chr8 36989569 . T C 0 PASS DP=49;GPV=1;SPV=0.062277;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,1:11,4 +chr8 37293591 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1 +chr8 37719760 . AAAAATCATTTTTTATAAAATGATTTAT A 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:5,4:12,1 +chr8 38155939 . C CT 0 PASS DP=27;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:4,5:1,1 +chr8 38530230 . C CA 0 PASS DP=31;GPV=1;SPV=0.20221;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:7,6:1,1 +chr8 38641551 . A T 0 PASS DP=62;GPV=1;SPV=0.00051874;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:17,4:8,10 +chr8 38883251 . CA C 0 PASS DP=28;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2 +chr8 38889122 . ATTTTTTTTT A 0 PASS DP=17;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,2:0,1:0,1 +chr8 38933790 . A AAAAAAAAAAAAAAAAAAAG 0 PASS DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1 +chr8 39862529 . CAAAAAAAAAAAAAAAA C 0 PASS DP=25;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,4:6,1 +chr8 40628239 . G C 0 PASS DP=58;GPV=1;SPV=0.00056666;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,4:12,7 +chr8 40885450 . C A 0 PASS DP=59;GPV=1;SPV=0.001656;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3 +chr8 41899637 . TA T 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2 +chr8 43080779 . C A 0 PASS DP=64;GPV=1;SPV=0.00011238;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:19,5:3,8 +chr8 43299102 . CT C 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,1:14,3 +chr8 43561054 . G A 0 PASS DP=57;GPV=1;SPV=0.01309;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,2:13,4 +chr8 45928279 . T A 0 PASS DP=251;GPV=1;SPV=0.026298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:123,17:96,13:27,4 +chr8 46948727 . T A 0 PASS DP=75;GPV=1;SPV=0.015934;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,8:12,6 +chr8 49391539 . A T 0 PASS DP=72;GPV=1;SPV=0.001872;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:15,7:18,5 +chr8 49706495 . GT G 0 PASS DP=42;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:4,3:5,3 +chr8 49918516 . CAGATAATTTCTTTAGAA C 0 PASS DP=78;GPV=1;SPV=0.027273;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:20,2:14,3 +chr8 50455983 . T A 0 PASS DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,2:10,5 +chr8 50807212 . G T 0 PASS DP=53;GPV=1;SPV=0.0066036;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,6:11,2 +chr8 51171654 . G C 0 PASS DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,6:10,2 +chr8 51887745 . C CT 0 PASS DP=19;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,5:1,2 +chr8 53610444 . A ACT 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,2:8,4 +chr8 55021486 . G C 0 PASS DP=70;GPV=1;SPV=0.00016802;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:16,9:12,7 +chr8 55213856 . CTTTT C 0 PASS DP=18;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2 +chr8 55213864 . T C 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr8 55730292 . T G 0 PASS DP=69;GPV=1;SPV=0.00032942;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:15,6:10,5 +chr8 56106846 . C G 0 PASS DP=41;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:11,8:5,5 +chr8 56533074 . T TCACA 0 PASS DP=38;GPV=1;SPV=0.0047113;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:2,7:3,2 +chr8 56848939 . A C 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:5,2:13,4 +chr8 57210828 . G C 0 PASS DP=339;GPV=1;SPV=0.030644;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:181,24:126,12:55,12 +chr8 57356054 . C T 0 PASS DP=67;GPV=1;SPV=6.2405e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:9,5:14,9 +chr8 57527689 . C T 0 PASS DP=18;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,2:1,1:2,1 +chr8 58261941 . G T 0 PASS DP=72;GPV=1;SPV=0.026944;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:21,1:10,4 +chr8 59456165 . G T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,1:10,3 +chr8 59473524 . C CAAA 0 PASS DP=36;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,10:4,10:0,0 +chr8 59756155 . A T 0 PASS DP=59;GPV=1;SPV=0.0019356;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:9,4:12,4 +chr8 60874150 . G A 0 PASS DP=64;GPV=1;SPV=0.00056109;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,8:12,3 +chr8 61333479 . C T 0 PASS DP=65;GPV=1;SPV=8.1152e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:9,7:15,10 +chr8 62305584 . A C 0 PASS DP=66;GPV=1;SPV=0.0019076;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:9,4:17,5 +chr8 63498774 . A T 0 PASS DP=57;GPV=1;SPV=0.014722;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:17,3:12,7 +chr8 63579606 . G T 0 PASS DP=26;GPV=1;SPV=0.12913;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:3,4:6,1 +chr8 63584605 . G A 0 PASS DP=80;GPV=1;SPV=0.0021565;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:18,5:19,6 +chr8 63783492 . G C 0 PASS DP=64;GPV=1;SPV=0.0014004;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,5:10,4 +chr8 64504827 . G T 0 PASS DP=56;GPV=1;SPV=5.1887e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,8:10,3 +chr8 65623892 . A G 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:7,8:4,4 +chr8 66304830 . G GTC 0 PASS DP=25;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:9,3:2,1 +chr8 66357348 . G A 0 PASS DP=49;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,4:13,2:13,2 +chr8 67475816 . TC T 0 PASS DP=40;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:3,1:12,7 +chr8 68366059 . C CA 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,1:13,3 +chr8 68789726 . A G 0 PASS DP=64;GPV=1;SPV=0.0017011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:17,3:11,9 +chr8 70242309 . A G 0 PASS DP=68;GPV=1;SPV=0.00034156;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:12,3:16,12 +chr8 71712673 . T TTTTTTATATATATATATATATATA 0 PASS DP=58;GPV=1;SPV=0.034172;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,10:12,2:13,8 +chr8 71908412 . T G 0 PASS DP=85;GPV=1;SPV=5.4865e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:12,10:15,5 +chr8 71914084 . CTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,6:2,1 +chr8 72851888 . A G 0 PASS DP=38;GPV=1;SPV=0.0064207;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:11,8:4,3 +chr8 73465197 . C T 0 PASS DP=54;GPV=1;SPV=0.0084627;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,7:10,8 +chr8 73831632 . T G 0 PASS DP=52;GPV=1;SPV=0.0059655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,4:9,1 +chr8 74883479 . G A 0 PASS DP=62;GPV=1;SPV=0.016974;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,5:13,2 +chr8 75424064 . G A 0 PASS DP=61;GPV=1;SPV=0.00022212;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,4:10,6 +chr8 75714037 . G A 0 PASS DP=58;GPV=1;SPV=0.0012364;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:12,7:10,3 +chr8 75945290 . T G 0 PASS DP=67;GPV=1;SPV=0.0019062;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:14,3:14,7 +chr8 76691423 . A G 0 PASS DP=55;GPV=1;SPV=0.0012499;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,4:11,8 +chr8 78001645 . G T 0 PASS DP=50;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:10,3:4,2 +chr8 79787710 . C T 0 PASS DP=27;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,3:1,2:2,1 +chr8 79860397 . C CT 0 PASS DP=54;GPV=1;SPV=0.0057809;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,5:11,9 +chr8 82761960 . T TACACAC 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1 +chr8 83059537 . CGTGT C 0 PASS DP=34;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:12,6:2,1 +chr8 83710933 . T G 0 PASS DP=65;GPV=1;SPV=0.00095522;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:9,6:17,5 +chr8 84064952 . GAATTCTGA G 0 PASS DP=61;GPV=1;SPV=0.0040715;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,5:11,4 +chr8 84563053 . C T 0 PASS DP=50;GPV=1;SPV=0.0018707;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,4:7,5 +chr8 84951535 . G A 0 PASS DP=34;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,4:9,4 +chr8 86082779 . T TTAAAAAAAAAA 0 PASS DP=36;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,3:10,1 +chr8 87307263 . T G 0 PASS DP=66;GPV=1;SPV=0.069705;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,5:19,2:15,3 +chr8 87323710 . G A 0 PASS DP=43;GPV=1;SPV=0.027099;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,4:10,4 +chr8 87685190 . G T 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,1:15,3 +chr8 87764539 . C CCACACACACACACACA 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,3:5,1 +chr8 88226876 . GTATT G 0 PASS DP=51;GPV=1;SPV=0.02975;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,7:12,7 +chr8 88495491 . T A 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr8 89215700 . AAT A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr8 90307988 . T TAA 0 PASS DP=43;GPV=1;SPV=0.011343;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,10:5,5:9,5 +chr8 92359845 . G T 0 PASS DP=72;GPV=1;SPV=0.053561;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:21,2:15,3 +chr8 93887123 . A AG 0 PASS DP=28;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,2:5,5 +chr8 94244272 . G A 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr8 94417480 . TA T 0 PASS DP=53;GPV=1;SPV=0.00751;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:11,7:7,7 +chr8 95080164 . T G 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,1:9,4 +chr8 98209445 . CA C 0 PASS DP=39;GPV=1;SPV=0.070365;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:13,6:7,1 +chr8 99639985 . GTAA G 0 PASS DP=42;GPV=1;SPV=0.091248;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,5:11,2:4,3 +chr8 100173752 . T A 0 PASS DP=64;GPV=1;SPV=0.0086598;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:8,4:19,3 +chr8 102265001 . G A 0 PASS DP=71;GPV=1;SPV=0.0031867;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,4:15,6 +chr8 102422896 . A AATAAT 0 PASS DP=69;GPV=1;SPV=0.0003919;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,11:14,5:11,6 +chr8 102422898 . A T 0 PASS DP=69;GPV=1;SPV=0.00014199;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:12,5:12,7 +chr8 102988780 . A C 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr8 103757014 . A T 0 PASS DP=55;GPV=1;SPV=0.17677;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:4,2:10,3 +chr8 104803651 . C CT 0 PASS DP=18;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0 +chr8 105877643 . C T 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2 +chr8 105877656 . ATATT A 0 PASS DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:4,1:3,2 +chr8 106283108 . G C 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:5,4:10,8 +chr8 106704393 . CTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,2:0,1:2,1 +chr8 106852135 . T A 0 PASS DP=34;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:3,1:1,1 +chr8 107012898 . A G 0 PASS DP=57;GPV=1;SPV=0.0003039;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:8,6:10,4 +chr8 107241914 . G A 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,3:12,1 +chr8 107342782 . TACACACACACACAC T 0 PASS DP=42;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,9:5,7:1,2 +chr8 107370725 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,1:6,1 +chr8 107681071 . TA T 0 PASS DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1 +chr8 109235877 . C CT 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,3:4,4 +chr8 109725620 . C T 0 PASS DP=52;GPV=1;SPV=0.0012739;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,8:4,1 +chr8 109940110 . T C 0 PASS DP=49;GPV=1;SPV=0.0053357;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,4:11,2 +chr8 110728374 . T C 0 PASS DP=47;GPV=1;SPV=0.25496;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,4:11,2:16,2 +chr8 111871255 . A T 0 PASS DP=68;GPV=1;SPV=0.0027922;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,7:15,4 +chr8 113444374 . G C 0 PASS DP=19;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,6:0,2:0,4 +chr8 113761203 . A T 0 PASS DP=68;GPV=1;SPV=0.0025244;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,6:13,3 +chr8 114210471 . CTTTT C 0 PASS DP=33;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,12:5,9:4,3 +chr8 116457834 . C T 0 PASS DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:17,6:8,9 +chr8 117230448 . C A 0 PASS DP=52;GPV=1;SPV=0.00054703;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,8:9,5 +chr8 117261582 . T A 0 PASS DP=43;GPV=1;SPV=0.092375;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:7,1:10,2 +chr8 118002381 . C CAA 0 PASS DP=34;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:8,7:2,1 +chr8 118039557 . CAA C 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,5:2,4 +chr8 118234710 . C CA 0 PASS DP=52;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:2,8:12,1 +chr8 118366878 . AAAT A 0 PASS DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,4:5,5 +chr8 119161003 . C T 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,4:6,1 +chr8 119706719 . TTCTA T 0 PASS DP=36;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,1:8,4 +chr8 119706737 . C T 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:5,4:11,1 +chr8 119858172 . C CAA 0 PASS DP=24;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2 +chr8 121353652 . CTT C 0 PASS DP=27;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,3:3,1 +chr8 122102608 . A AT 0 PASS DP=57;GPV=1;SPV=0.0081097;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:12,8:8,5 +chr8 122307907 . T TCACA 0 PASS DP=48;GPV=1;SPV=0.019732;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,4:8,5 +chr8 122314225 . G A 0 PASS DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:13,4:11,3 +chr8 124239204 . A AAAAAAAAGAAAG 0 PASS DP=27;GPV=1;SPV=0.1226;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:4,3:7,3 +chr8 125477576 . A G 0 PASS DP=65;GPV=1;SPV=0.010154;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,2:7,8 +chr8 126053788 . A G 0 PASS DP=65;GPV=1;SPV=0.00025694;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,11:14,5 +chr8 126682726 . G A 0 PASS DP=55;GPV=1;SPV=0.018909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3 +chr8 128717468 . G C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2 +chr8 130467443 . CAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,6:4,1 +chr8 130707431 . A T 0 PASS DP=75;GPV=1;SPV=1.8253e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7 +chr8 130934253 . A G 0 PASS DP=66;GPV=1;SPV=4.5866e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,8:8,4 +chr8 131139943 . T A 0 PASS DP=65;GPV=1;SPV=0.0035972;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:12,5:14,3 +chr8 132403016 . C CAAAAA 0 PASS DP=32;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,4:6,3:2,1 +chr8 133214050 . AGT A 0 PASS DP=57;GPV=1;SPV=0.20321;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,3:11,1:7,2 +chr8 133445676 . C T 0 PASS DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:15,5:15,6 +chr8 134874840 . C CA 0 PASS DP=36;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,12:2,9:5,3 +chr8 135262344 . G T 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:2,0:18,4 +chr8 135536234 . GTT G 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,5:3,1 +chr8 136313794 . T A 0 PASS DP=53;GPV=1;SPV=0.034248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3 +chr8 136350316 . A AGATGTAATG 0 PASS DP=49;GPV=1;SPV=0.0066039;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:7,5:7,7 +chr8 136723179 . G GCACACACACA 0 PASS DP=23;GPV=1;SPV=0.025058;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,5:0,1 +chr8 137214206 . GTATATATA G 0 PASS DP=17;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,4:0,1:0,3 +chr8 138248823 . C CAAAAA 0 PASS DP=33;GPV=1;SPV=0.015968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,7:4,1 +chr8 138613540 . C T 0 PASS DP=74;GPV=1;SPV=2.4756e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,5:14,11 +chr8 138829403 . G GTTTTT 0 PASS DP=19;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,3:2,1 +chr8 143065758 . CTT C 0 PASS DP=40;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:5,3:16,1 +chr8 143405337 . C G 0 PASS DP=72;GPV=1;SPV=0.016594;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,6:7,1:9,5 +chr8 143430504 . C CCCGGCGGGGGCGGGGGGGCG 0 PASS DP=40;GPV=1;SPV=0.0056397;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:6,5:10,6 +chr8 144913678 . A AACACAC 0 PASS DP=39;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,5:5,1 +chr9 545752 . A T 0 PASS DP=25;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:1,4:6,1 +chr9 1573639 . G C 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr9 3707361 . C T 0 PASS DP=56;GPV=1;SPV=0.0097742;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,6:14,2 +chr9 6790682 . A AAG 0 PASS DP=27;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:2,3:3,3 +chr9 6866971 . TTGTGTG T 0 PASS DP=34;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,5:4,3:4,2 +chr9 7029298 . T G 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:10,4:9,1 +chr9 8353818 . ATATATGTATATATGT A 0 PASS DP=43;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:4,4:13,4 +chr9 8870687 . A AACACACAC 0 PASS DP=44;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:7,7:1,3 +chr9 9671005 . G A 0 PASS DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,3:13,7 +chr9 9878253 . A G 0 PASS DP=67;GPV=1;SPV=0.0003601;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:16,9:11,5 +chr9 10031987 . T A 0 PASS DP=59;GPV=1;SPV=6.3758e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:14,23:9,13:5,10 +chr9 11379751 . C T 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,1:15,3 +chr9 11778177 . C CAAAAAAA 0 PASS DP=37;GPV=1;SPV=0.057585;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:11,5:7,2 +chr9 12922049 . A C 0 PASS DP=66;GPV=1;SPV=0.00054998;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:12,4:14,8 +chr9 13345168 . G A 0 PASS DP=50;GPV=1;SPV=0.00019093;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,8:6,2 +chr9 13668785 . A T 0 PASS DP=59;GPV=1;SPV=0.0047434;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:10,6:14,2 +chr9 14083479 . T TA 0 PASS DP=27;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,7:0,4:1,3 +chr9 14091075 . C A 0 PASS DP=61;GPV=1;SPV=0.14145;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2 +chr9 15406668 . G A 0 PASS DP=41;GPV=1;SPV=0.0051722;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,5:5,2 +chr9 15774246 . TAAA T 0 PASS DP=29;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:4,2:6,2 +chr9 15830968 . A AT 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:4,5:7,8 +chr9 16779114 . T TA 0 PASS DP=42;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:14,1:7,3 +chr9 16935628 . G T 0 PASS DP=63;GPV=1;SPV=0.00022074;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:13,7:10,6 +chr9 18735753 . T C 0 PASS DP=33;GPV=1;SPV=0.0083519;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,6:5,3 +chr9 19891171 . T A 0 PASS DP=62;GPV=1;SPV=0.0019011;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:15,3:9,6 +chr9 20599459 . A T 0 PASS DP=59;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,4:9,1:9,3 +chr9 23070620 . C CAA 0 PASS DP=39;GPV=1;SPV=0.057736;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:18,6:2,1 +chr9 25595525 . CTT C 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,5:5,3 +chr9 26249433 . C A 0 PASS DP=64;GPV=1;SPV=0.00080797;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:19,4:6,7 +chr9 26369801 . C CA 0 PASS DP=27;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,8:5,7:0,1 +chr9 26621231 . G C 0 PASS DP=67;GPV=1;SPV=0.00052875;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:17,3:7,7 +chr9 26645167 . TAC T 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,3:7,1 +chr9 27403516 . ATTT A 0 PASS DP=29;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:3,4:4,6 +chr9 27444154 . A AGAAG 0 PASS DP=41;GPV=1;SPV=0.0012598;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:8,8:3,5 +chr9 27691811 . C T 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,1:12,3 +chr9 27825162 . G T 0 PASS DP=64;GPV=1;SPV=0.0011908;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:12,5:15,7 +chr9 29898309 . C A 0 PASS DP=65;GPV=1;SPV=0.00067124;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:11,7:14,4 +chr9 30518419 . T C 0 PASS DP=55;GPV=1;SPV=0.0044113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,2:10,7 +chr9 31290559 . C A 0 PASS DP=57;GPV=1;SPV=0.0014939;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:14,4:8,6 +chr9 32577585 . G GT 0 PASS DP=45;GPV=1;SPV=0.025825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,9:11,7:5,2 +chr9 32769927 . C CAGAGAG 0 PASS DP=38;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,12:3,9:5,3 +chr9 33317433 . A T 0 PASS DP=45;GPV=1;SPV=0.01269;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,4:11,1 +chr9 34301987 . ATT A 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,1:5,3 +chr9 34636320 . A T 0 PASS DP=46;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:0,1:4,1 +chr9 36187024 . CTT C 0 PASS DP=31;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:2,4:7,1 +chr9 37258757 . T TA 0 PASS DP=32;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:15,4:1,1 +chr9 37377794 . A G 0 PASS DP=44;GPV=1;SPV=0.17677;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:7,1:7,4 +chr9 37384136 . TTTCCTTCC T 0 PASS DP=35;GPV=1;SPV=0.0047325;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,5:7,2 +chr9 37649466 . C A 0 PASS DP=69;GPV=1;SPV=3.8209e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:10,12:8,7 +chr9 37741450 . G GAC 0 PASS DP=37;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,4:2,2 +chr9 38983868 . C T 0 PASS DP=115;GPV=1;SPV=0.042309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:18,7:34,2 +chr9 38993833 . C T 0 PASS DP=151;GPV=1;SPV=0.045773;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:76,13:23,3:53,10 +chr9 39002559 . T G 0 PASS DP=128;GPV=1;SPV=0.031751;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:30,8:31,9 +chr9 39584576 . C CAA 0 PASS DP=31;GPV=1;SPV=0.026636;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:2,4:4,2 +chr9 39586459 . G T 0 PASS DP=138;GPV=1;SPV=0.0060513;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:55,5:16,4 +chr9 39625941 . C T 0 PASS DP=46;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:16,2:6,1 +chr9 39776863 . G A 0 PASS DP=25;GPV=1;SPV=0.18814;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr9 39818290 . T C 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr9 40716658 . T A 0 PASS DP=68;GPV=1;SPV=0.081606;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:23,2:14,3 +chr9 40971176 . A C 0 PASS DP=233;GPV=1;SPV=0.029454;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:104,18:47,8:57,10 +chr9 41000264 . T G 0 PASS DP=175;GPV=1;SPV=0.036965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:84,17:39,6:45,11 +chr9 41082797 . C T 0 PASS DP=122;GPV=1;SPV=0.0069784;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:24,6:39,3 +chr9 41158015 . G A 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,2:4,5 +chr9 41184026 . C T 0 PASS DP=56;GPV=1;SPV=0.023196;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:13,6:14,1 +chr9 41234892 . C A 0 PASS DP=172;GPV=1;SPV=0.00011711;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:85,16:17,11:68,5 +chr9 41241909 . T C 0 PASS DP=97;GPV=1;SPV=0.031176;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:24,2:29,10 +chr9 41266616 . C T 0 PASS DP=114;GPV=1;SPV=0.03955;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:32,9:15,3 +chr9 41294007 . G A 0 PASS DP=158;GPV=1;SPV=0.024194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:29,5:46,11 +chr9 41474195 . A C 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,2:10,5 +chr9 41697097 . C CA 0 PASS DP=59;GPV=1;SPV=0.11505;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:20,1:11,3 +chr9 41803726 . G A 0 PASS DP=69;GPV=1;SPV=0.036397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr9 42158933 . CAGACTGGACT C 0 PASS DP=70;GPV=1;SPV=7.8055e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,9:12,5 +chr9 42164810 . G T 0 PASS DP=60;GPV=1;SPV=0.15576;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:16,1:21,4 +chr9 43181108 . T A 0 PASS DP=60;GPV=1;SPV=0.13544;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,2:17,2 +chr9 43301126 . A T 0 PASS DP=122;GPV=1;SPV=0.014473;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:61,7:29,5:32,2 +chr9 43301142 . ATATT A 0 PASS DP=116;GPV=1;SPV=0.013323;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:29,6:28,1 +chr9 43301203 . TTG T 0 PASS DP=134;GPV=1;SPV=0.0090494;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:34,6:34,2 +chr9 44027408 . C T 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,3:14,1 +chr9 44030494 . G C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr9 44545523 . A C 0 PASS DP=33;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr9 45308796 . C T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr9 60568577 . C G 0 PASS DP=101;GPV=1;SPV=0.040799;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:36,4:16,5 +chr9 60575712 . CA C 0 PASS DP=198;GPV=1;SPV=0.033306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,15:43,9:44,6 +chr9 60575716 . G C 0 PASS DP=194;GPV=1;SPV=0.047582;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:92,15:40,9:52,6 +chr9 61174867 . G A 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr9 61562987 . A G 0 PASS DP=62;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:15,7:12,1 +chr9 61846153 . G A 0 PASS DP=28;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr9 61915381 . T C 0 PASS DP=108;GPV=1;SPV=0.046035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:25,8:24,1 +chr9 62307653 . A T 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr9 62748136 . G A 0 PASS DP=51;GPV=1;SPV=0.047306;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:10,7:14,4 +chr9 63039174 . T G 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:1,3:4,4 +chr9 63759448 . C T 0 PASS DP=224;GPV=1;SPV=0.02963;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:103,15:39,6:64,9 +chr9 63825097 . T C 0 PASS DP=412;GPV=1;SPV=0.035766;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:216,26:65,5:151,21 +chr9 63885664 . C G 0 PASS DP=170;GPV=1;SPV=0.014958;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:86,10:48,5:38,5 +chr9 64082964 . TTATATATA T 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:7,2:0,2 +chr9 64109795 . C CAATT 0 PASS DP=89;GPV=1;SPV=0.0015933;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,16:16,8:18,8 +chr9 64446417 . A G 0 PASS DP=99;GPV=1;SPV=0.015578;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:29,3:20,4 +chr9 64469826 . C CTTTT 0 PASS DP=22;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:2,2:5,2 +chr9 64722888 . T A 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr9 65061096 . C T 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:2,1:13,4 +chr9 65377823 . G A 0 PASS DP=42;GPV=1;SPV=0.012829;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:15,5:2,2 +chr9 65514830 . T C 0 PASS DP=73;GPV=1;SPV=0.03355;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:24,6:17,2 +chr9 65551509 . A T 0 PASS DP=66;GPV=1;SPV=0.023216;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:10,7:18,6 +chr9 65554563 . C T 0 PASS DP=47;GPV=1;SPV=0.025087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:14,1:9,7 +chr9 65650975 . C T 0 PASS DP=148;GPV=1;SPV=0.038338;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:66,18:30,16:36,2 +chr9 65770295 . G A 0 PASS DP=57;GPV=1;SPV=0.15715;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:9,1:26,4 +chr9 66160564 . C T 0 PASS DP=62;GPV=1;SPV=0.011804;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:14,7:13,5 +chr9 66261718 . C T 0 PASS DP=57;GPV=1;SPV=0.016158;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:19,6:7,1 +chr9 66369884 . A G 0 PASS DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,7:10,1 +chr9 67085333 . AATTT A 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,2:6,4 +chr9 67630851 . A G 0 PASS DP=50;GPV=1;SPV=0.20137;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2 +chr9 67787558 . A T 0 PASS DP=60;GPV=1;SPV=0.038355;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:1,1:24,10 +chr9 67798387 . C A 0 PASS DP=194;GPV=1;SPV=0.020786;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:86,23:33,10:53,13 +chr9 67832491 . A C 0 PASS DP=50;GPV=1;SPV=0.011315;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,2:10,7 +chr9 67881117 . T A 0 PASS DP=140;GPV=1;SPV=0.0052956;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:40,8:31,1 +chr9 68287357 . G A 0 PASS DP=49;GPV=1;SPV=0.006964;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,5:8,4 +chr9 69696380 . A T 0 PASS DP=54;GPV=1;SPV=0.018392;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:12,5:11,1 +chr9 72132286 . A C 0 PASS DP=60;GPV=1;SPV=0.0026089;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:11,4:13,5 +chr9 74125462 . G C 0 PASS DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:9,4:9,6 +chr9 74319090 . G A 0 PASS DP=53;GPV=1;SPV=0.0032501;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,3:9,3 +chr9 74361818 . A T 0 PASS DP=68;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:18,5:5,9 +chr9 77048262 . C T 0 PASS DP=62;GPV=1;SPV=8.3349e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:6,7:8,8 +chr9 79695351 . T A 0 PASS DP=63;GPV=1;SPV=0.028109;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,5:13,3 +chr9 80580189 . C G 0 PASS DP=68;GPV=1;SPV=0.00011357;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,7:11,6 +chr9 81013339 . G C 0 PASS DP=70;GPV=1;SPV=0.00064075;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,8:14,2 +chr9 83008891 . C CTCATATATATAT 0 PASS DP=18;GPV=1;SPV=0.14706;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:5,2:2,1 +chr9 83479785 . G A 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr9 85700487 . C T 0 PASS DP=68;GPV=1;SPV=0.031142;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,1:15,4 +chr9 86510989 . T A 0 PASS DP=50;GPV=1;SPV=0.00071247;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:8,8:10,4 +chr9 87239049 . G T 0 PASS DP=71;GPV=1;SPV=0.0028443;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:10,3:18,5 +chr9 87518485 . T C 0 PASS DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,11:14,6 +chr9 88112566 . T C 0 PASS DP=41;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:8,1:15,3 +chr9 89979293 . G GT 0 PASS DP=38;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:13,6:4,2 +chr9 90429584 . C A 0 PASS DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,2:10,2 +chr9 90526339 . A G 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,2:8,2 +chr9 93023795 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,4:3,3 +chr9 93074431 . CAAAA C 0 PASS DP=22;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1 +chr9 96727745 . A AT 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr9 99841231 . G GA 0 PASS DP=40;GPV=1;SPV=0.008316;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1 +chr9 101181127 . A ATG 0 PASS DP=33;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:6,3:4,1 +chr9 102099034 . T G 0 PASS DP=63;GPV=1;SPV=0.00046907;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:13,7:11,5 +chr9 102208043 . C G 0 PASS DP=60;GPV=1;SPV=0.00035208;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:14,8:9,6 +chr9 103543037 . A T 0 PASS DP=66;GPV=1;SPV=0.0033765;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:9,3:15,4 +chr9 104528724 . C G 0 PASS DP=54;GPV=1;SPV=0.00088456;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,5:7,6 +chr9 104944790 . A G 0 PASS DP=33;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:1,2:0,0 +chr9 105162046 . G A 0 PASS DP=29;GPV=1;SPV=0.017149;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,10:3,6:3,4 +chr9 105654873 . CTG C 0 PASS DP=41;GPV=1;SPV=0.0024274;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,12:6,9:2,3 +chr9 108743292 . ATATG A 0 PASS DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1 +chr9 110433364 . CAA C 0 PASS DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,7:3,4:1,3 +chr9 111499821 . CA C 0 PASS DP=22;GPV=1;SPV=0.006192;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,5:2,1 +chr9 112515042 . G C 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0 +chr9 113061748 . C T 0 PASS DP=206;GPV=1;SPV=0.033714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:99,25:32,14:67,11 +chr9 113257478 . AT A 0 PASS DP=31;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:5,4:2,3 +chr9 114660862 . C CT 0 PASS DP=27;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,3:6,4 +chr9 115271886 . C CA 0 PASS DP=37;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:2,12:0,7:2,5 +chr9 116998569 . CCATA C 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,1:17,3 +chr9 117043907 . C CAAAA 0 PASS DP=36;GPV=1;SPV=0.0043505;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:4,5:5,2 +chr9 117067055 . G C 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3 +chr9 117585579 . T C 0 PASS DP=54;GPV=1;SPV=0.0039611;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:9,11:11,9 +chr9 117975199 . T A 0 PASS DP=54;GPV=1;SPV=0.0066857;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,5:11,2 +chr9 119366504 . G A 0 PASS DP=41;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,10:2,5:2,5 +chr9 119800001 . C T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr9 120020055 . T A 0 PASS DP=75;GPV=1;SPV=0.07519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,1:19,3 +chr9 121544139 . CATAT C 0 PASS DP=33;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,5:0,2:0,3 +chr9 121858266 . G C 0 PASS DP=63;GPV=1;SPV=0.013337;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,3:9,3 +chr9 122727039 . CT C 0 PASS DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,7:2,2 +chr9 126511387 . CA C 0 PASS DP=29;GPV=1;SPV=0.04741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,7:5,1 +chr9 127021497 . C CA 0 PASS DP=40;GPV=1;SPV=1.904e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:3,13:4,3 +chr9 127471472 . T TA 0 PASS DP=34;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:2,4:5,1 +chr9 127713496 . CTT C 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:5,2:4,2 +chr9 128083513 . C CTTTT 0 PASS DP=28;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:3,3:7,3 +chr9 130409638 . G T 0 PASS DP=74;GPV=1;SPV=0.0025617;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,4:13,4 +chr9 132105907 . G A 0 PASS DP=64;GPV=1;SPV=0.0099286;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:14,5:17,4 +chr9 132188636 . T C 0 PASS DP=96;GPV=1;SPV=3.9192e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:18,8:18,6 +chr9 132832063 . GA G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr9 134098711 . T A 0 PASS DP=79;GPV=1;SPV=1.8301e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:13,9:14,6 +chr9 134948374 . T G 0 PASS DP=63;GPV=1;SPV=0.0011495;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:12,7:15,6 +chr9 136131338 . C CGGG 0 PASS DP=20;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:2,4:0,0 +chr9 136150424 . G A 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,1:15,3 +chr9 136725211 . C CT 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,6:6,3 +chr9 136889990 . TGA T 0 PASS DP=37;GPV=1;SPV=5.7121e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,16:3,7:5,9 +chr9 138129089 . A G 0 PASS DP=57;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,4:10,3:10,1 +chr9 138144598 . A G 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,1:2,3 +chr9 138214206 . T C 0 PASS DP=70;GPV=1;SPV=0.018754;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:17,1:17,6 +chr9 138237340 . AG A 0 PASS DP=24;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:8,4:1,1 +chrX 2904903 . CT C 0 PASS DP=25;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:4,8:1,1 +chrX 3534618 . C A 0 PASS DP=61;GPV=1;SPV=2.1749e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,5:9,5 +chrX 3653799 . A T 0 PASS DP=28;GPV=1;SPV=0.074074;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chrX 3740839 . A AAAAAG 0 PASS DP=20;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:4,3:0,1 +chrX 6584770 . C T 0 PASS DP=40;GPV=1;SPV=0.040303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,1:6,4 +chrX 8498537 . T C 0 PASS DP=23;GPV=1;SPV=0.031621;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,2:0,1 +chrX 8594688 . A G 0 PASS DP=21;GPV=1;SPV=0.0017181;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:1,7:1,3 +chrX 8594703 . TATATATACAC T 0 PASS DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,6:1,3 +chrX 9404939 . C G 0 PASS DP=116;GPV=1;SPV=0.044225;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:16,6:21,3 +chrX 9405966 . G A 0 PASS DP=340;GPV=1;SPV=0.0049026;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:76,7:65,12 +chrX 9410334 . T C 0 PASS DP=128;GPV=1;SPV=0.035719;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:21,1:42,7 +chrX 9411980 . C A 0 PASS DP=281;GPV=1;SPV=0.0018742;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:107,16:49,8:58,8 +chrX 9973248 . C G 0 PASS DP=71;GPV=1;SPV=3.4015e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,4:11,10 +chrX 10648510 . G A 0 PASS DP=50;GPV=1;SPV=0.0017074;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4 +chrX 11411183 . T A 0 PASS DP=17;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,3:0,0:2,3 +chrX 11412688 . C A 0 PASS DP=53;GPV=1;SPV=2.2035e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:5,5:4,6 +chrX 11679886 . TTTTCTTTC T 0 PASS DP=43;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,3:5,4 +chrX 13600283 . T C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chrX 15059829 . G A 0 PASS DP=40;GPV=1;SPV=0.00017781;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,5:5,4 +chrX 15398102 . T TG 0 PASS DP=35;GPV=1;SPV=0.00018275;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,9:1,8:2,1 +chrX 15746022 . CT C 0 PASS DP=20;GPV=1;SPV=0.0091688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:2,6:1,2 +chrX 16231503 . C T 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,2:3,1 +chrX 16355097 . T C 0 PASS DP=39;GPV=1;SPV=0.040959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,3:1,2:0,1 +chrX 21945634 . T TCC 0 PASS DP=19;GPV=1;SPV=0.011438;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:0,0:3,4 +chrX 22375511 . T TGAGAGAGA 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,3:4,4 +chrX 22899014 . ATG A 0 PASS DP=42;GPV=1;SPV=0.020407;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,3:5,3 +chrX 23377575 . GGTGT G 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,3:4,4 +chrX 23500147 . T TTTTTATTTTATTTTA 0 PASS DP=33;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:1,5:8,3 +chrX 24617371 . G GT 0 PASS DP=24;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,9:1,7:3,2 +chrX 24660678 . C CA 0 PASS DP=35;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:2,4:5,3 +chrX 25828071 . A T 0 PASS DP=45;GPV=1;SPV=0.016117;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,4:4,1:3,3 +chrX 25998490 . G GCACACACACACACACACACA 0 PASS DP=37;GPV=1;SPV=0.0011899;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,8:3,7:2,1 +chrX 26326024 . ATGTTTGTT A 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,5:7,4 +chrX 27975047 . TAC T 0 PASS DP=51;GPV=1;SPV=0.00041615;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,16:4,10:8,6 +chrX 28969902 . AAC A 0 PASS DP=49;GPV=1;SPV=0.011818;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3 +chrX 28981090 . CAAAAAAAAAAAAAAAAA C 0 PASS DP=21;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,3:1,1 +chrX 30638324 . T A 0 PASS DP=46;GPV=1;SPV=0.0021778;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,8:1,2:4,6 +chrX 32975346 . C CT 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chrX 34423647 . C A 0 PASS DP=44;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,3:2,2:1,1 +chrX 36949507 . C G 0 PASS DP=45;GPV=1;SPV=0.00061448;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,2:6,4 +chrX 38917230 . A T 0 PASS DP=60;GPV=1;SPV=1.9105e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,8:7,10 +chrX 40914902 . A G 0 PASS DP=47;GPV=1;SPV=0.00070944;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,7:2,2:1,5 +chrX 41272377 . G A 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,1:11,3 +chrX 41290837 . CAA C 0 PASS DP=18;GPV=1;SPV=0.022967;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2 +chrX 42871500 . C CGTGT 0 PASS DP=29;GPV=1;SPV=0.042556;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2 +chrX 42891118 . T C 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,4:9,5 +chrX 42894141 . A C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,5:5,3 +chrX 42972776 . T TAGAAAAACAAGATCCGAGAAG 0 PASS DP=52;GPV=1;SPV=0.046756;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,9:11,4:12,5 +chrX 44594077 . C T 0 PASS DP=44;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,3:1,2:2,1 +chrX 44803555 . G C 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:6,10:8,3 +chrX 44963440 . A AGT 0 PASS DP=47;GPV=1;SPV=0.15083;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:7,3:17,1 +chrX 47579180 . G A 0 PASS DP=65;GPV=1;SPV=8.8092e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:13,6:8,6 +chrX 48529848 . C A 0 PASS DP=57;GPV=1;SPV=6.1566e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:12,7:7,10 +chrX 49346058 . T A 0 PASS DP=486;GPV=1;SPV=0.03642;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:234,43:118,26:116,17 +chrX 49619948 . G A 0 PASS DP=55;GPV=1;SPV=0.043835;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2 +chrX 49619950 . A G 0 PASS DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2 +chrX 51421220 . C A 0 PASS DP=64;GPV=1;SPV=0.00025408;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,3:11,9 +chrX 52419147 . C G 0 PASS DP=79;GPV=1;SPV=0.00075376;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:16,7:20,7 +chrX 53023677 . AT A 0 PASS DP=41;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,4:8,5 +chrX 54226092 . AC A 0 PASS DP=32;GPV=1;SPV=0.00077284;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:4,11:2,2 +chrX 54270399 . CT C 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,5:6,1 +chrX 54685643 . T TTC 0 PASS DP=39;GPV=1;SPV=0.040404;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:4,2:9,2 +chrX 54923568 . G C 0 PASS DP=79;GPV=1;SPV=2.6553e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:11,9:19,9 +chrX 55564766 . T C 0 PASS DP=57;GPV=1;SPV=0.0071969;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,6:14,7 +chrX 56915260 . CAAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,5:4,1 +chrX 57744654 . G T 0 PASS DP=78;GPV=1;SPV=1.048e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,3:7,10 +chrX 60240358 . T C 0 PASS DP=69;GPV=1;SPV=0.0091975;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:26,6:6,2 +chrX 61341951 . G A 0 PASS DP=80;GPV=1;SPV=0.046535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:2,1:41,5 +chrX 62741422 . T A 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:13,3:9,4 +chrX 64611760 . A G 0 PASS DP=70;GPV=1;SPV=0.00017112;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,6:12,7 +chrX 64699661 . G T 0 PASS DP=57;GPV=1;SPV=0.0011798;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:15,6:8,6 +chrX 64793574 . G C 0 PASS DP=73;GPV=1;SPV=0.002842;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:18,5:17,7 +chrX 65450670 . C CAT 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,2:3,4 +chrX 65810417 . C T 0 PASS DP=68;GPV=1;SPV=0.0055487;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:11,3:20,6 +chrX 66218774 . C T 0 PASS DP=70;GPV=1;SPV=0.00016675;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:8,6:11,15 +chrX 66303397 . A C 0 PASS DP=57;GPV=1;SPV=0.054139;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:10,2:22,6 +chrX 66472390 . C G 0 PASS DP=81;GPV=1;SPV=0.0021701;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,5:20,5 +chrX 67150890 . A G 0 PASS DP=36;GPV=1;SPV=0.0083333;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,3:0,2:0,1 +chrX 67150912 . A G 0 PASS DP=34;GPV=1;SPV=0.49123;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:9,1:4,3 +chrX 67419912 . G C 0 PASS DP=73;GPV=1;SPV=0.00064966;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:12,3:17,8 +chrX 67992259 . CAAAAAAAA C 0 PASS DP=34;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:5,7:2,1 +chrX 73061472 . T A 0 PASS DP=78;GPV=1;SPV=0.000163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,5:14,9 +chrX 73361697 . C CT 0 PASS DP=24;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,5:0,2 +chrX 74744950 . T TC 0 PASS DP=34;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:5,2:7,2 +chrX 76790727 . C CAAAAAA 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:9,4:0,0 +chrX 78979489 . T G 0 PASS DP=58;GPV=1;SPV=0.027364;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,3:14,3 +chrX 79578104 . G A 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,4:8,1 +chrX 79748440 . G A 0 PASS DP=56;GPV=1;SPV=0.00010913;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:9,7:9,6 +chrX 80039055 . C G 0 PASS DP=62;GPV=1;SPV=0.00027813;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:7,3:16,10 +chrX 81140559 . CA C 0 PASS DP=29;GPV=1;SPV=0.11424;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,5:5,1 +chrX 81773446 . A T 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,7:6,2 +chrX 82101828 . G A 0 PASS DP=58;GPV=1;SPV=0.002634;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,3:12,6 +chrX 83560970 . C T 0 PASS DP=47;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,7:2,3:7,4 +chrX 85615846 . A C 0 PASS DP=55;GPV=1;SPV=0.014806;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,2:13,7 +chrX 86368530 . G A 0 PASS DP=63;GPV=1;SPV=0.0008518;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,4:8,5 +chrX 86753077 . T C 0 PASS DP=56;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,5:10,2:8,3 +chrX 87738329 . AT A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,4:4,1 +chrX 87741877 . T A 0 PASS DP=72;GPV=1;SPV=0.0040858;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,5:17,3 +chrX 88399377 . A T 0 PASS DP=68;GPV=1;SPV=0.00040909;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4 +chrX 88501121 . CA C 0 PASS DP=26;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:3,6:4,1 +chrX 88632183 . A G 0 PASS DP=54;GPV=1;SPV=0.000837;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:13,3:6,7 +chrX 88674609 . A T 0 PASS DP=51;GPV=1;SPV=0.00016223;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:5,7:10,4 +chrX 89407083 . G C 0 PASS DP=49;GPV=1;SPV=0.005596;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,3:9,4 +chrX 89426842 . A ATAT 0 PASS DP=36;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,4:5,3:6,1 +chrX 89426855 . AT A 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,4:7,1 +chrX 89504923 . C G 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3 +chrX 89755313 . C T 0 PASS DP=43;GPV=1;SPV=0.00012155;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:0,4:8,7 +chrX 89783722 . G A 0 PASS DP=35;GPV=1;SPV=6.0385e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:2,5:5,7 +chrX 89965420 . A T 0 PASS DP=30;GPV=1;SPV=0.020544;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,3:4,6 +chrX 89965421 . T C 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5 +chrX 90351880 . G T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:5,3:16,4 +chrX 90950728 . G A 0 PASS DP=80;GPV=1;SPV=0.013018;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:19,5:21,3 +chrX 93311798 . TA T 0 PASS DP=22;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:3,2:1,2 +chrX 93452164 . G GTA 0 PASS DP=33;GPV=1;SPV=0.024751;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,3:5,4 +chrX 94925670 . GAA G 0 PASS DP=27;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:6,4:1,1 +chrX 96018623 . C CA 0 PASS DP=60;GPV=1;SPV=0.0019356;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:12,6:9,2 +chrX 96980998 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:11,4:4,1 +chrX 97145325 . G A 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,2:9,2 +chrX 97161051 . G GT 0 PASS DP=36;GPV=1;SPV=0.0033;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:3,5:5,4 +chrX 99836512 . G A 0 PASS DP=55;GPV=1;SPV=0.0015923;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:16,3:7,10 +chrX 100321805 . TC T 0 PASS DP=38;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,8:4,2:4,6 +chrX 101405236 . C CA 0 PASS DP=37;GPV=1;SPV=0.025362;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:10,5:5,2 +chrX 102420569 . T C 0 PASS DP=67;GPV=1;SPV=0.013211;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6 +chrX 102824103 . C CTT 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,3:8,1 +chrX 107038536 . G GAA 0 PASS DP=30;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:7,3:5,1 +chrX 108444223 . CT C 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4 +chrX 108775705 . ACAT A 0 PASS DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,4:10,2 +chrX 109041056 . T TATA 0 PASS DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1 +chrX 109057693 . T G 0 PASS DP=41;GPV=1;SPV=0.018356;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,3:5,4 +chrX 110689536 . C A 0 PASS DP=39;GPV=1;SPV=0.24893;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:18,2:6,2 +chrX 110689544 . C A 0 PASS DP=40;GPV=1;SPV=0.083717;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,3:7,4 +chrX 111820197 . C T 0 PASS DP=66;GPV=1;SPV=0.036325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,2:14,3 +chrX 113914381 . TGGGGCCTCCA T 0 PASS DP=71;GPV=1;SPV=0.0020037;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:16,9:18,5 +chrX 115698647 . G A 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,5:6,1 +chrX 115885482 . C T 0 PASS DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chrX 116116510 . A G 0 PASS DP=35;GPV=1;SPV=0.024328;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,2:4,4 +chrX 116284047 . A G 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,4:1,1:2,3 +chrX 117233726 . G A 0 PASS DP=57;GPV=1;SPV=0.04058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,3:10,2 +chrX 117472419 . CAA C 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3 +chrX 118626065 . C CT 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chrX 119823558 . C T 0 PASS DP=22;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:4,1:0,1 +chrX 120582061 . GAA G 0 PASS DP=27;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,4:2,1 +chrX 120694831 . TTCTCTTTC T 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,2:10,2 +chrX 122374580 . C G 0 PASS DP=48;GPV=1;SPV=0.0028662;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,3:10,5 +chrX 122743892 . CTT C 0 PASS DP=25;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:5,3:2,1 +chrX 123306392 . A T 0 PASS DP=56;GPV=1;SPV=0.00091169;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,3:9,6 +chrX 124028985 . TTA T 0 PASS DP=47;GPV=1;SPV=0.029938;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,11:9,7:8,4 +chrX 124028993 . A T 0 PASS DP=39;GPV=1;SPV=0.028152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:4,6:11,5 +chrX 124179087 . T TACACACACACACACACACACACACACACACAC 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,3:10,2 +chrX 125697474 . C T 0 PASS DP=67;GPV=1;SPV=0.0063951;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:23,4:8,5 +chrX 126030636 . C A 0 PASS DP=58;GPV=1;SPV=0.0038133;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,2:16,11 +chrX 126477462 . C A 0 PASS DP=59;GPV=1;SPV=7.6729e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:11,5:6,6 +chrX 126605126 . C G 0 PASS DP=47;GPV=1;SPV=0.0049682;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:5,5:13,3 +chrX 127192185 . C CA 0 PASS DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:10,2:5,2 +chrX 127533529 . T TAAAA 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2 +chrX 128447366 . T A 0 PASS DP=52;GPV=1;SPV=2.2678e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:8,9:6,5 +chrX 129058522 . T C 0 PASS DP=61;GPV=1;SPV=0.00068429;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,9:13,2 +chrX 129368973 . G C 0 PASS DP=28;GPV=1;SPV=0.0047009;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,2:4,3 +chrX 129606990 . A AGAAG 0 PASS DP=48;GPV=1;SPV=0.074336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,5:12,3:10,2 +chrX 131500587 . G GAAAAGA 0 PASS DP=27;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,3:4,2:3,1 +chrX 131861544 . G A 0 PASS DP=70;GPV=1;SPV=0.00039513;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:15,3:11,8 +chrX 134571038 . T TA 0 PASS DP=54;GPV=1;SPV=0.0029872;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:11,4:9,4 +chrX 135523978 . T A 0 PASS DP=71;GPV=1;SPV=0.0019773;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,3:14,4 +chrX 136904766 . T TA 0 PASS DP=40;GPV=1;SPV=0.017286;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,4:7,9 +chrX 138341932 . T A 0 PASS DP=24;GPV=1;SPV=0.011374;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,10:1,3:4,7 +chrX 139082520 . G A 0 PASS DP=61;GPV=1;SPV=0.0035775;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,5:13,2 +chrX 141695017 . A G 0 PASS DP=66;GPV=1;SPV=0.025802;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,3:11,5 +chrX 141790862 . A G 0 PASS DP=57;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,1:14,5 +chrX 142118797 . A AAAAG 0 PASS DP=37;GPV=1;SPV=0.033189;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4 +chrX 142298163 . C A 0 PASS DP=76;GPV=1;SPV=3.3767e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:18,7:8,7 +chrX 143689782 . A ATTACCAGTTAGATAACCAAACT 0 PASS DP=58;GPV=1;SPV=0.0034744;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,6:15,8 +chrX 143689783 . C G 0 PASS DP=59;GPV=1;SPV=0.024998;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:13,6:15,8 +chrX 144486319 . G A 0 PASS DP=57;GPV=1;SPV=0.019629;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:12,3:18,7 +chrX 144516420 . G A 0 PASS DP=71;GPV=1;SPV=0.0011981;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:15,7:16,5 +chrX 144668547 . TATGC T 0 PASS DP=37;GPV=1;SPV=0.020668;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,3:8,1 +chrX 145443745 . C A 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,3:9,3 +chrX 145550923 . C A 0 PASS DP=50;GPV=1;SPV=0.0057104;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,5:10,4 +chrX 145601392 . C T 0 PASS DP=41;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:14,5:4,1 +chrX 147036928 . C CT 0 PASS DP=31;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:6,6:3,1 +chrX 148704244 . TTA T 0 PASS DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,4:8,1 +chrX 149424245 . GCCCAGTAGCCCTACTGGGTGGCTAGA G 0 PASS DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,2:6,6 +chrX 150327631 . AAAG A 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chrX 151806088 . A ATGTG 0 PASS DP=45;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,8:4,5:5,3 +chrX 154088031 . C T 0 PASS DP=50;GPV=1;SPV=0.003465;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,4:8,3 +chrX 154941879 . A G 0 PASS DP=45;GPV=1;SPV=0.0091605;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,2:9,4 +chrX 155470241 . T TATAA 0 PASS DP=96;GPV=1;SPV=0.025403;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:23,11:16,4 +chrY 11184593 . C A 0 PASS DP=35;GPV=1;SPV=0.20294;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chrY 11185093 . T G 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,3:8,2 +chrY 11188522 . A T 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,3:10,2 +chrY 11221710 . C T 0 PASS DP=68;GPV=1;SPV=0.074416;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:14,3:25,3 +chrY 11239989 . G A 0 PASS DP=167;GPV=1;SPV=0.043031;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:71,17:54,13:17,4 +chrY 11247437 . T C 0 PASS DP=122;GPV=1;SPV=0.024624;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:30,4:22,3 +chrY 11267878 . G T 0 PASS DP=83;GPV=1;SPV=0.0041457;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:13,5:25,4 +chrY 11280293 . A T 0 PASS DP=400;GPV=1;SPV=0.015554;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:179,39:80,23:99,16 +chrY 56834173 . C T 0 PASS DP=160;GPV=1;SPV=0.043963;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:71,12:29,4:42,8 +chrY 56851994 . G A 0 PASS DP=275;GPV=1;SPV=0.043257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:130,27:71,10:59,17 +chrY 56853118 . A C 0 PASS DP=271;GPV=1;SPV=0.013381;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:118,28:61,12:57,16 +chrY 56864412 . C A 0 PASS DP=533;GPV=1;SPV=0.017044;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:293:258,35:134,19:124,16 +chrY 56870747 . A G 0 PASS DP=258;GPV=1;SPV=0.03366;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:133,18:72,11:61,7 +chrY 56875350 . A C 0 PASS DP=581;GPV=1;SPV=0.025519;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:292:257,35:131,16:126,19 +chrY 56875498 . C T 0 PASS DP=426;GPV=1;SPV=0.0029475;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:201,31:107,12:94,19 +chrY 56875990 . G C 0 PASS DP=420;GPV=1;SPV=0.01275;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:191,28:88,15:103,13 +chrY 56886877 . C T 0 PASS DP=138;GPV=1;SPV=0.014715;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:26,6:36,5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sig_contrib_table.tsv Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,5 @@ +sample s1 s2 s3 s4 s5 s6 s7 s8 s9 s10 s11 s12 s13 s14 s15 s16 s17 s18 s19 s20 s21 s22 s23 s24 s25 s26 s27 s28 s29 s30 +ovary-I.vcf 0.110142906240717 0.0107179228940658 0.250337884546217 0 0.123574305205091 0.00064433123164414 0 0.132427942951795 0.0645286099734586 0 0.0449394465051191 0.0482562813691387 0.0021792135773442 0 0.0208527968750023 0.113202769843279 0 0 0 0 0 0 0 0 0.0534957402074307 0 0 0.0246998485796975 0 0 +ovary-H.vcf 0.105077406305297 0.0161426031811577 0.213744671485429 0 0.267847442499011 0 0 0.0744758833337775 0.0589788373729043 0 0.0260566297995198 0.00332317088253305 0.0101947253359771 0 0 0.165596602885273 0 0 0 0 0 0 0 0 0.0157724425494898 0 0.0064649564106814 0.0363246279589487 0 0 +lung-G.vcf 0.211033078587086 0.0166966912787851 0.172186940126079 0 0.286633042356631 0 0 0.00842344130070046 0.11400762247453 0 0.0288922172140213 0.0327352792025852 0 0 0 0.034128625357202 0 0 0.0288565039877324 0 0 0 0 0 0.0631355806535697 0 0.000844012191577089 0.00242696526950036 0 0 +lung-F.vcf 0.275881644071761 0.00660164806875313 0.17426347088712 0 0.102714094410494 0 0 0.0917555941611345 0.0202950075653247 0 0.0296908924905143 0.0090315352239272 0 0 0 0.188940992761965 0 0 0 0 0 0 0 0 0.0273695319074987 0 0.00555599996394483 0.0404508145574958 0 0.0274487739300663
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sigmatrix.tab Fri Jun 04 22:35:17 2021 +0000 @@ -0,0 +1,97 @@ +substitution context NewSig_1 NewSig_2 NewSig_3 NewSig_4 +C>A A.A 2.012349e-02 2.099063e-02 1.788529e-02 2.529973e-02 +C>A A.C 1.232623e-02 5.099845e-05 2.019020e-02 8.344265e-03 +C>A A.G 2.056317e-03 5.061512e-03 5.110667e-03 5.598599e-04 +C>A A.T 4.276274e-03 7.030586e-03 1.433976e-02 9.044799e-03 +C>A C.A 9.858499e-03 6.774294e-03 1.254817e-02 1.109854e-02 +C>A C.C 7.182083e-03 5.137412e-03 1.754580e-02 7.871756e-03 +C>A C.G 3.071657e-03 7.744685e-04 3.478215e-03 3.033573e-03 +C>A C.T 9.805120e-04 1.022892e-02 8.612445e-03 1.089991e-02 +C>A G.A 1.295094e-02 5.191677e-03 2.838657e-03 1.229298e-02 +C>A G.C 4.262714e-03 5.183579e-03 8.941540e-03 5.390685e-03 +C>A G.G 3.769228e-03 1.557726e-03 1.699600e-03 3.945304e-03 +C>A G.T 6.573060e-03 1.031818e-04 1.059791e-02 7.185424e-03 +C>A T.A 3.862713e-03 1.624881e-02 5.519485e-03 1.246359e-02 +C>A T.C 8.824563e-03 6.792814e-03 4.042968e-03 1.212436e-02 +C>A T.G 1.024188e-03 9.815808e-04 2.029646e-03 1.087012e-03 +C>A T.T 1.181704e-02 9.618044e-03 1.665114e-02 1.307952e-02 +C>G A.A 1.983228e-02 1.270519e-02 1.655687e-02 1.398506e-02 +C>G A.C 4.742892e-11 1.043116e-02 9.102239e-03 2.314023e-20 +C>G A.G 2.906055e-03 1.687383e-03 5.265593e-03 2.218107e-03 +C>G A.T 6.407465e-03 8.581278e-03 1.079483e-02 9.668306e-03 +C>G C.A 3.411641e-03 6.888991e-03 7.212837e-03 7.949635e-03 +C>G C.C 1.962245e-04 9.715947e-03 1.158418e-12 7.156965e-03 +C>G C.G 3.300401e-20 1.855024e-03 4.346525e-03 6.200559e-03 +C>G C.T 9.865314e-03 1.922285e-03 6.273441e-03 6.226190e-03 +C>G G.A 1.351834e-19 2.119713e-03 1.072168e-02 8.229779e-03 +C>G G.C 2.379848e-03 4.610717e-03 8.965747e-04 6.505033e-03 +C>G G.G 6.979718e-04 1.181697e-03 4.111756e-03 2.523959e-03 +C>G G.T 2.220903e-03 5.934769e-03 8.611327e-03 6.739344e-03 +C>G T.A 3.709345e-03 8.786940e-03 7.620791e-03 8.983741e-03 +C>G T.C 3.827093e-03 8.865683e-03 6.057793e-03 6.240498e-03 +C>G T.G 1.899263e-04 4.938065e-03 3.040335e-03 1.626378e-03 +C>G T.T 3.860261e-03 2.446381e-02 2.353559e-02 1.511199e-02 +C>T A.A 3.499419e-02 3.714546e-02 4.085734e-02 3.151538e-02 +C>T A.C 1.719840e-02 1.389005e-02 5.154001e-03 1.603745e-02 +C>T A.G 7.482535e-02 1.348050e-02 3.052063e-02 1.592390e-02 +C>T A.T 1.607143e-02 1.438585e-02 1.967215e-02 1.741898e-02 +C>T C.A 1.606874e-02 1.435234e-02 1.105389e-02 1.125796e-02 +C>T C.C 1.700219e-02 9.214402e-03 1.282668e-02 1.377429e-02 +C>T C.G 4.356691e-02 1.624586e-02 1.169686e-02 1.963077e-02 +C>T C.T 2.301602e-02 3.266347e-02 1.574218e-02 2.039183e-02 +C>T G.A 1.970589e-02 7.742080e-03 1.178227e-02 1.297792e-02 +C>T G.C 1.466426e-02 1.914382e-02 6.909098e-03 1.355502e-02 +C>T G.G 3.701827e-02 2.542796e-02 1.262381e-02 3.190790e-02 +C>T G.T 1.382222e-02 2.392818e-02 6.174897e-03 1.508942e-02 +C>T T.A 1.143013e-02 1.914536e-02 1.002998e-02 7.458921e-03 +C>T T.C 1.879514e-02 2.009898e-02 1.421423e-02 1.556176e-02 +C>T T.G 3.061491e-02 4.743450e-03 1.167740e-02 7.144683e-03 +C>T T.T 3.133938e-02 2.219653e-02 3.807693e-02 3.192865e-02 +T>A A.A 1.841481e-02 8.914346e-03 1.741295e-02 1.361688e-02 +T>A A.C 3.425691e-03 8.698638e-03 3.992626e-03 5.443164e-03 +T>A A.G 9.072656e-03 1.149533e-02 1.354019e-03 8.223373e-03 +T>A A.T 9.659453e-03 1.830189e-02 1.174139e-02 1.710128e-02 +T>A C.A 2.727069e-03 7.915424e-03 5.772823e-03 4.530720e-03 +T>A C.C 1.215316e-02 3.470147e-03 7.886743e-03 1.369393e-02 +T>A C.G 3.791221e-03 6.605963e-03 3.294232e-03 8.818173e-03 +T>A C.T 6.289729e-03 1.435186e-02 3.597548e-03 1.211551e-02 +T>A G.A 6.615841e-04 4.146662e-03 4.933783e-03 4.863214e-03 +T>A G.C 1.515807e-03 4.210462e-03 3.382936e-03 9.183128e-04 +T>A G.G 1.070023e-02 1.089710e-02 5.492536e-03 8.802992e-03 +T>A G.T 8.128051e-03 4.233917e-03 9.103699e-03 1.259684e-02 +T>A T.A 1.476324e-02 6.549494e-03 1.579044e-02 7.620545e-03 +T>A T.C 6.738527e-03 8.767946e-04 7.353978e-03 5.436410e-03 +T>A T.G 2.186518e-03 5.445354e-03 2.568144e-03 7.932364e-03 +T>A T.T 1.942541e-02 1.590353e-02 2.306069e-02 3.009347e-02 +T>C A.A 3.011297e-02 3.375076e-02 4.906885e-02 3.383597e-02 +T>C A.C 9.041893e-03 8.933211e-03 8.243474e-03 6.303632e-03 +T>C A.G 2.247578e-02 9.001629e-03 1.950973e-02 8.972544e-03 +T>C A.T 1.210116e-02 1.578255e-02 1.360358e-02 9.528566e-03 +T>C C.A 6.835997e-03 6.652934e-03 1.036887e-02 7.994706e-03 +T>C C.C 9.462334e-03 6.392714e-03 8.437885e-03 1.653238e-02 +T>C C.G 7.156018e-03 1.612832e-02 1.225799e-02 9.579249e-03 +T>C C.T 1.040136e-02 2.530647e-02 1.208573e-02 1.371705e-02 +T>C G.A 8.743261e-03 1.074754e-02 5.087249e-03 1.090594e-02 +T>C G.C 6.111817e-03 6.456267e-03 3.668932e-20 6.346677e-03 +T>C G.G 1.768834e-02 1.377477e-02 1.512171e-02 1.240640e-02 +T>C G.T 3.605052e-03 1.397132e-02 1.282818e-02 1.036663e-02 +T>C T.A 5.577357e-03 1.122841e-02 7.516272e-03 9.852123e-03 +T>C T.C 2.142753e-02 1.003311e-02 1.311934e-02 1.883301e-02 +T>C T.G 3.231084e-03 7.639140e-03 1.374439e-02 6.010940e-03 +T>C T.T 1.771125e-02 5.247659e-02 2.430165e-02 3.016747e-02 +T>G A.A 1.331124e-02 1.426333e-02 7.805243e-05 7.473665e-03 +T>G A.C 3.887921e-03 1.684454e-03 1.435130e-04 6.445063e-04 +T>G A.G 2.394241e-03 5.040173e-03 6.853239e-03 6.994037e-03 +T>G A.T 6.066623e-03 7.374853e-03 2.079215e-10 5.136694e-03 +T>G C.A 5.000218e-10 8.218020e-03 3.668932e-20 2.314023e-20 +T>G C.C 3.300401e-20 1.904378e-03 4.043369e-03 4.672135e-03 +T>G C.G 4.310666e-03 2.256883e-03 8.181657e-03 1.928646e-03 +T>G C.T 2.128603e-03 9.425709e-04 8.787753e-03 6.815812e-04 +T>G G.A 2.012235e-03 4.628783e-04 4.459546e-03 1.814827e-03 +T>G G.C 3.997247e-03 1.335924e-03 1.270853e-03 3.568581e-03 +T>G G.G 7.790802e-03 1.175435e-02 8.700500e-03 8.985015e-03 +T>G G.T 6.538479e-03 1.329525e-02 4.903674e-03 1.074729e-02 +T>G T.A 2.781217e-03 4.774228e-03 2.965653e-03 7.301491e-03 +T>G T.C 5.182071e-03 5.200467e-03 5.617300e-03 2.629881e-03 +T>G T.G 5.245736e-03 1.345072e-02 1.698469e-02 9.832179e-03 +T>G T.T 2.041928e-02 1.752970e-02 3.978473e-02 1.976735e-02