Cosine similarity
 original VS reconstructed

json formatted dictionary of datasets and their paths

genome name in the BSgenome bioconductor package

path to the tab separated file describing the levels in function of datasets

Version of the Cosmic Signature set to be used to express mutational profiles

Path to the user-defined signature matrix

selects the N most significant signatures in samples to express mutational profiles

number of ranks to display for parameter optimization

minimu cosine similarity to rename a new signature according to cosmic v3.2

display input signature profiles if set to yes

Path to tool directory, where tool data are stored