Mercurial > repos > artbio > mircounts
diff test-data/translated_dme.gff3 @ 3:ee99c6374a3b draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mircounts commit af48e9f6df2717ffd3731a974be1ec36e4eff779"
| author | artbio |
|---|---|
| date | Fri, 18 Oct 2019 19:18:17 -0400 |
| parents | 10f0e4c00b13 |
| children | b7ac138bb781 |
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--- a/test-data/translated_dme.gff3 Tue Jul 18 06:49:21 2017 -0400 +++ b/test-data/translated_dme.gff3 Fri Oct 18 19:18:17 2019 -0400 @@ -1,15 +1,17 @@ ##gff-version 3 -##generated by mature_mir_gff_translation.py +##date 2014-6-22 # -# Chromosomal coordinates of microRNAs ** relative to the hairpin precursors ** -# microRNAs: miRBase current_version -# genome-build-id: check http://mirbase.org/ +# Chromosomal coordinates of Drosophila melanogaster microRNAs +# microRNAs: miRBase v21 +# genome-build-id: BDGP5.0 # # Hairpin precursor sequences have type "miRNA_primary_transcript". # Note, these sequences do not represent the full primary transcript, # rather a predicted stem-loop portion that includes the precursor # miRNA. Mature sequences have type "miRNA". # +# generated by mature_mir_gff_translation.py 2019-10-18 20:33:13.877649 +# dme-bantam . miRNA_primary_transcript 1 81 . + . ID=MI0000387;Alias=MI0000387;Name=dme-bantam dme-bantam-5p . miRNA 15 37 . + . ID=MIMAT0020823;Alias=MIMAT0020823;Name=dme-bantam-5p;Derives_from=MI0000387;Parent_mir_Name=dme-bantam dme-bantam-3p . miRNA 52 74 . + . ID=MIMAT0000365;Alias=MIMAT0000365;Name=dme-bantam-3p;Derives_from=MI0000387;Parent_mir_Name=dme-bantam @@ -95,10 +97,9 @@ dme-miR-13a-5p . miRNA 47 68 . - . ID=MIMAT0020795;Alias=MIMAT0020795;Name=dme-miR-13a-5p;Derives_from=MI0000133;Parent_mir_Name=dme-mir-13a dme-miR-13a-3p . miRNA 7 28 . - . ID=MIMAT0000118;Alias=MIMAT0000118;Name=dme-miR-13a-3p;Derives_from=MI0000133;Parent_mir_Name=dme-mir-13a dme-mir-13b-1 . miRNA_primary_transcript 1 68 . - . ID=MI0000134;Alias=MI0000134;Name=dme-mir-13b-1 +dme-miR-13b-1-5p . miRNA 39 63 . - . ID=MIMAT0020796;Alias=MIMAT0020796;Name=dme-miR-13b-1-5p;Derives_from=MI0000134;Parent_mir_Name=dme-mir-13b-1 dme-miR-13b-3p . miRNA 5 26 . - . ID=MIMAT0000119;Alias=MIMAT0000119;Name=dme-miR-13b-3p;Derives_from=MI0000134;Parent_mir_Name=dme-mir-13b-1 -dme-miR-13b-1-5p . miRNA 39 63 . - . ID=MIMAT0020796;Alias=MIMAT0020796;Name=dme-miR-13b-1-5p;Derives_from=MI0000134;Parent_mir_Name=dme-mir-13b-1 dme-mir-13b-2 . miRNA_primary_transcript 1 70 . + . ID=MI0000135;Alias=MI0000135;Name=dme-mir-13b-2 -dme-miR-13b-3p . miRNA 46 67 . + . ID=MIMAT0000119_1;Alias=MIMAT0000119;Name=dme-miR-13b-3p;Derives_from=MI0000135;Parent_mir_Name=dme-mir-13b-2 dme-miR-13b-2-5p . miRNA 8 31 . + . ID=MIMAT0020797;Alias=MIMAT0020797;Name=dme-miR-13b-2-5p;Derives_from=MI0000135;Parent_mir_Name=dme-mir-13b-2 dme-mir-14 . miRNA_primary_transcript 1 63 . + . ID=MI0000136;Alias=MI0000136;Name=dme-mir-14 dme-miR-14-5p . miRNA 4 25 . + . ID=MIMAT0020798;Alias=MIMAT0020798;Name=dme-miR-14-5p;Derives_from=MI0000136;Parent_mir_Name=dme-mir-14 @@ -206,11 +207,10 @@ dme-mir-280 . miRNA_primary_transcript 1 95 . + . ID=MI0000365;Alias=MI0000365;Name=dme-mir-280 dme-miR-280-5p . miRNA 10 36 . + . ID=MIMAT0000343;Alias=MIMAT0000343;Name=dme-miR-280-5p;Derives_from=MI0000365;Parent_mir_Name=dme-mir-280 dme-mir-281-1 . miRNA_primary_transcript 1 90 . - . ID=MI0000366;Alias=MI0000366;Name=dme-mir-281-1 -dme-miR-281-3p . miRNA 11 33 . - . ID=MIMAT0000345_1;Alias=MIMAT0000345;Name=dme-miR-281-3p;Derives_from=MI0000366;Parent_mir_Name=dme-mir-281-1 dme-miR-281-1-5p . miRNA 55 77 . - . ID=MIMAT0000344;Alias=MIMAT0000344;Name=dme-miR-281-1-5p;Derives_from=MI0000366;Parent_mir_Name=dme-mir-281-1 dme-mir-281-2 . miRNA_primary_transcript 1 92 . - . ID=MI0000370;Alias=MI0000370;Name=dme-mir-281-2 +dme-miR-281-2-5p . miRNA 57 78 . - . ID=MIMAT0000349;Alias=MIMAT0000349;Name=dme-miR-281-2-5p;Derives_from=MI0000370;Parent_mir_Name=dme-mir-281-2 dme-miR-281-3p . miRNA 11 33 . - . ID=MIMAT0000345;Alias=MIMAT0000345;Name=dme-miR-281-3p;Derives_from=MI0000370;Parent_mir_Name=dme-mir-281-2 -dme-miR-281-2-5p . miRNA 57 78 . - . ID=MIMAT0000349;Alias=MIMAT0000349;Name=dme-miR-281-2-5p;Derives_from=MI0000370;Parent_mir_Name=dme-mir-281-2 dme-mir-282 . miRNA_primary_transcript 1 97 . + . ID=MI0000367;Alias=MI0000367;Name=dme-mir-282 dme-miR-282-5p . miRNA 17 40 . + . ID=MIMAT0000346;Alias=MIMAT0000346;Name=dme-miR-282-5p;Derives_from=MI0000367;Parent_mir_Name=dme-mir-282 dme-miR-282-3p . miRNA 60 81 . + . ID=MIMAT0020809;Alias=MIMAT0020809;Name=dme-miR-282-3p;Derives_from=MI0000367;Parent_mir_Name=dme-mir-282 @@ -233,16 +233,14 @@ dme-mir-289 . miRNA_primary_transcript 1 99 . + . ID=MI0000385;Alias=MI0000385;Name=dme-mir-289 dme-miR-289-5p . miRNA 16 41 . + . ID=MIMAT0000364;Alias=MIMAT0000364;Name=dme-miR-289-5p;Derives_from=MI0000385;Parent_mir_Name=dme-mir-289 dme-mir-2a-1 . miRNA_primary_transcript 1 76 . - . ID=MI0000117;Alias=MI0000117;Name=dme-mir-2a-1 -dme-miR-2a-3p . miRNA 6 28 . - . ID=MIMAT0000106_1;Alias=MIMAT0000106;Name=dme-miR-2a-3p;Derives_from=MI0000117;Parent_mir_Name=dme-mir-2a-1 dme-miR-2a-1-5p . miRNA 49 70 . - . ID=MIMAT0020780;Alias=MIMAT0020780;Name=dme-miR-2a-1-5p;Derives_from=MI0000117;Parent_mir_Name=dme-mir-2a-1 dme-mir-2a-2 . miRNA_primary_transcript 1 72 . - . ID=MI0000118;Alias=MI0000118;Name=dme-mir-2a-2 +dme-miR-2a-2-5p . miRNA 45 65 . - . ID=MIMAT0020781;Alias=MIMAT0020781;Name=dme-miR-2a-2-5p;Derives_from=MI0000118;Parent_mir_Name=dme-mir-2a-2 dme-miR-2a-3p . miRNA 7 29 . - . ID=MIMAT0000106;Alias=MIMAT0000106;Name=dme-miR-2a-3p;Derives_from=MI0000118;Parent_mir_Name=dme-mir-2a-2 -dme-miR-2a-2-5p . miRNA 45 65 . - . ID=MIMAT0020781;Alias=MIMAT0020781;Name=dme-miR-2a-2-5p;Derives_from=MI0000118;Parent_mir_Name=dme-mir-2a-2 dme-mir-2b-1 . miRNA_primary_transcript 1 77 . - . ID=MI0000119;Alias=MI0000119;Name=dme-mir-2b-1 +dme-miR-2b-1-5p . miRNA 47 69 . - . ID=MIMAT0020782;Alias=MIMAT0020782;Name=dme-miR-2b-1-5p;Derives_from=MI0000119;Parent_mir_Name=dme-mir-2b-1 dme-miR-2b-3p . miRNA 8 30 . - . ID=MIMAT0000107;Alias=MIMAT0000107;Name=dme-miR-2b-3p;Derives_from=MI0000119;Parent_mir_Name=dme-mir-2b-1 -dme-miR-2b-1-5p . miRNA 47 69 . - . ID=MIMAT0020782;Alias=MIMAT0020782;Name=dme-miR-2b-1-5p;Derives_from=MI0000119;Parent_mir_Name=dme-mir-2b-1 dme-mir-2b-2 . miRNA_primary_transcript 1 83 . - . ID=MI0000120;Alias=MI0000120;Name=dme-mir-2b-2 -dme-miR-2b-3p . miRNA 8 30 . - . ID=MIMAT0000107_1;Alias=MIMAT0000107;Name=dme-miR-2b-3p;Derives_from=MI0000120;Parent_mir_Name=dme-mir-2b-2 dme-miR-2b-2-5p . miRNA 53 75 . - . ID=MIMAT0020783;Alias=MIMAT0020783;Name=dme-miR-2b-2-5p;Derives_from=MI0000120;Parent_mir_Name=dme-mir-2b-2 dme-mir-2c . miRNA_primary_transcript 1 102 . - . ID=MI0000431;Alias=MI0000431;Name=dme-mir-2c dme-miR-2c-5p . miRNA 59 83 . - . ID=MIMAT0020845;Alias=MIMAT0020845;Name=dme-miR-2c-5p;Derives_from=MI0000431;Parent_mir_Name=dme-mir-2c @@ -495,14 +493,12 @@ dme-miR-5-5p . miRNA 43 65 . - . ID=MIMAT0000110;Alias=MIMAT0000110;Name=dme-miR-5-5p;Derives_from=MI0000123;Parent_mir_Name=dme-mir-5 dme-miR-5-3p . miRNA 5 27 . - . ID=MIMAT0020786;Alias=MIMAT0020786;Name=dme-miR-5-3p;Derives_from=MI0000123;Parent_mir_Name=dme-mir-5 dme-mir-6-1 . miRNA_primary_transcript 1 82 . - . ID=MI0000124;Alias=MI0000124;Name=dme-mir-6-1 -dme-miR-6-3p . miRNA 10 31 . - . ID=MIMAT0000111_2;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000124;Parent_mir_Name=dme-mir-6-1 dme-miR-6-1-5p . miRNA 51 72 . - . ID=MIMAT0020787;Alias=MIMAT0020787;Name=dme-miR-6-1-5p;Derives_from=MI0000124;Parent_mir_Name=dme-mir-6-1 dme-mir-6-2 . miRNA_primary_transcript 1 74 . - . ID=MI0000125;Alias=MI0000125;Name=dme-mir-6-2 -dme-miR-6-3p . miRNA 6 27 . - . ID=MIMAT0000111_1;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000125;Parent_mir_Name=dme-mir-6-2 dme-miR-6-2-5p . miRNA 45 67 . - . ID=MIMAT0020788;Alias=MIMAT0020788;Name=dme-miR-6-2-5p;Derives_from=MI0000125;Parent_mir_Name=dme-mir-6-2 dme-mir-6-3 . miRNA_primary_transcript 1 80 . - . ID=MI0000126;Alias=MI0000126;Name=dme-mir-6-3 +dme-miR-6-3-5p . miRNA 50 72 . - . ID=MIMAT0020789;Alias=MIMAT0020789;Name=dme-miR-6-3-5p;Derives_from=MI0000126;Parent_mir_Name=dme-mir-6-3 dme-miR-6-3p . miRNA 7 28 . - . ID=MIMAT0000111;Alias=MIMAT0000111;Name=dme-miR-6-3p;Derives_from=MI0000126;Parent_mir_Name=dme-mir-6-3 -dme-miR-6-3-5p . miRNA 50 72 . - . ID=MIMAT0020789;Alias=MIMAT0020789;Name=dme-miR-6-3-5p;Derives_from=MI0000126;Parent_mir_Name=dme-mir-6-3 dme-mir-7 . miRNA_primary_transcript 1 88 . + . ID=MI0000127;Alias=MI0000127;Name=dme-mir-7 dme-miR-7-5p . miRNA 15 37 . + . ID=MIMAT0000112;Alias=MIMAT0000112;Name=dme-miR-7-5p;Derives_from=MI0000127;Parent_mir_Name=dme-mir-7 dme-miR-7-3p . miRNA 55 76 . + . ID=MIMAT0020790;Alias=MIMAT0020790;Name=dme-miR-7-3p;Derives_from=MI0000127;Parent_mir_Name=dme-mir-7 @@ -675,8 +671,6 @@ dme-miR-983-5p . miRNA 53 74 . - . ID=MIMAT0005499;Alias=MIMAT0005499;Name=dme-miR-983-5p;Derives_from=MI0005840;Parent_mir_Name=dme-mir-983-1 dme-miR-983-3p . miRNA 17 38 . - . ID=MIMAT0020880;Alias=MIMAT0020880;Name=dme-miR-983-3p;Derives_from=MI0005840;Parent_mir_Name=dme-mir-983-1 dme-mir-983-2 . miRNA_primary_transcript 1 99 . - . ID=MI0005841;Alias=MI0005841;Name=dme-mir-983-2 -dme-miR-983-5p . miRNA 58 79 . - . ID=MIMAT0005499_1;Alias=MIMAT0005499;Name=dme-miR-983-5p;Derives_from=MI0005841;Parent_mir_Name=dme-mir-983-2 -dme-miR-983-3p . miRNA 22 43 . - . ID=MIMAT0020880_1;Alias=MIMAT0020880;Name=dme-miR-983-3p;Derives_from=MI0005841;Parent_mir_Name=dme-mir-983-2 dme-mir-984 . miRNA_primary_transcript 1 90 . - . ID=MI0005842;Alias=MI0005842;Name=dme-mir-984 dme-miR-984-5p . miRNA 53 75 . - . ID=MIMAT0005500;Alias=MIMAT0005500;Name=dme-miR-984-5p;Derives_from=MI0005842;Parent_mir_Name=dme-mir-984 dme-miR-984-3p . miRNA 17 36 . - . ID=MIMAT0020881;Alias=MIMAT0020881;Name=dme-miR-984-3p;Derives_from=MI0005842;Parent_mir_Name=dme-mir-984