# HG changeset patch
# User artbio
# Date 1589240160 0
# Node ID 1a4662c69bee08a9278c1bd6cc8a020e0bc8193d
# Parent  78f52aba02050ec6604260d45f04ecf557650358
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy-sv commit 07c73df696d6d80e03f03232603d713882131625"

diff -r 78f52aba0205 -r 1a4662c69bee lumpy.xml
--- a/lumpy.xml	Thu May 07 23:34:27 2020 +0000
+++ b/lumpy.xml	Mon May 11 23:36:00 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="lumpy" name="lumpy-sv" version="1.2.0">
+<tool id="lumpy" name="lumpy-sv" version="1.2.1">
     <description>find structural variants</description>
     <requirements>
         <requirement type="package" version="0.2.13">lumpy-sv</requirement>
diff -r 78f52aba0205 -r 1a4662c69bee pairend_distro.py
--- a/pairend_distro.py	Thu May 07 23:34:27 2020 +0000
+++ b/pairend_distro.py	Mon May 11 23:36:00 2020 +0000
@@ -62,11 +62,11 @@
 L = []
 c = 0
 
-for l in sys.stdin:
+for length in sys.stdin:
     if c >= options.N:
         break
 
-    A = l.rstrip().split('\t')
+    A = length.rstrip().split('\t')
     flag = int(A[SAM_FLAG])
     refname = A[SAM_REFNAME]
     mate_refname = A[SAM_MATE_REFNAME]