# HG changeset patch
# User artbio
# Date 1589051256 0
# Node ID 6ae687b3769b282f09eca61f3ff7a015d7464956
# Parent  9305080e49aa95974526163b26ef849c32f1c1f9
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/artbio_mutect2 commit 5f88428431700b059b950043d24c46ab92e580de"

diff -r 9305080e49aa -r 6ae687b3769b artbio_mutect2.xml
--- a/artbio_mutect2.xml	Thu May 07 16:47:36 2020 +0000
+++ b/artbio_mutect2.xml	Sat May 09 19:07:36 2020 +0000
@@ -19,7 +19,7 @@
             ln -s '$reference_source.reference_sequence' reference.fa &&
             samtools faidx reference.fa &&
             gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" &&
-        #else if str($reference_source.reference_source_selector) == 'history'
+        #else if str($reference_source.reference_source_selector) == 'cached'
             ln -s '$reference_source.reference_sequence.fields.path' reference.fa &&
             samtools faidx reference.fa &&
             gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" &&
diff -r 9305080e49aa -r 6ae687b3769b macros.xml
--- a/macros.xml	Thu May 07 16:47:36 2020 +0000
+++ b/macros.xml	Sat May 09 19:07:36 2020 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@VERSION@">4.1.4.0</token>
-    <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token>
+    <token name="@WRAPPER_VERSION@">@VERSION@+artbio2</token>
 
     <xml name="requirements">
         <requirements>
@@ -352,7 +352,7 @@
     ]]></template>
 
     <xml name="gatk_normal_bam_req_params">
-        <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Tumor BAM/SAM/CRAM file" />
+        <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Normal BAM/SAM/CRAM file" />
     </xml>
 
     <template name="picard_normal_bam_index"><![CDATA[