diff vcfvcfintersect.xml @ 1:fabee003a629 draft default tip

Uploaded

--- a/vcfvcfintersect.xml	Tue May 27 16:12:31 2014 -0400
+++ b/vcfvcfintersect.xml	Wed Jun 11 16:42:03 2014 -0400
@@ -83,7 +83,7 @@
       <param name="loci" value="False" />
       <patam name="adv_options" value="False" />
       <param name="window_size" value="30" />
-      <param name="ref_file" value="vcflib-human-reference-chr20-XY.fa" />
+      <param name="ref_file" value="vcflib-test-genome-phix.fa" />
       <output name="out_file1" file="vcfvcfintersect-test1.vcf"/>
     </test>
     <test>
@@ -95,7 +95,7 @@
       <param name="loci" value="False" />
       <patam name="adv_options" value="False" />
       <param name="window_size" value="30" />
-      <param name="ref_file" value="vcflib-human-reference-chr20-XY.fa" />
+      <param name="ref_file" value="vcflib-test-genome-phix.fa" />
       <output name="out_file1" file="vcfvcfintersect-test2.vcf"/>
     </test>
     </tests>
@@ -103,7 +103,7 @@
 
 Computes intersections and unions for two VCF datasets. Unifies equivalent alleles within window-size bp. 
 
-Options::
+The options are::
 
     -v, --invert              invert the selection, printing only records which would
     -i, --intersect-vcf FILE  use this VCF for set intersection generation